Query psy5396
Match_columns 291
No_of_seqs 175 out of 420
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 01:31:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f0d_A PARP-16, poly [ADP-ribo 100.0 3.1E-78 1.1E-82 552.4 21.2 265 10-283 4-273 (277)
2 1efy_A Poly (ADP-ribose) polym 99.9 1.5E-24 5.2E-29 205.2 16.3 248 7-280 49-345 (350)
3 3kjd_A Poly [ADP-ribose] polym 99.9 1.1E-24 3.9E-29 206.6 15.1 199 7-232 68-283 (368)
4 4dqy_C Poly [ADP-ribose] polym 99.9 7E-24 2.4E-28 208.7 19.6 250 7-281 194-491 (506)
5 3c4h_A Poly(ADP-ribose) polyme 99.9 9.3E-24 3.2E-28 200.3 13.8 204 7-232 55-273 (357)
6 2x5y_A Zinc finger CCCH-type a 99.9 7.5E-23 2.6E-27 175.7 9.3 163 102-281 3-172 (173)
7 2pqf_A Poly [ADP-ribose] polym 99.8 1.5E-18 5.2E-23 151.9 13.3 167 102-283 10-195 (198)
8 3blj_A Poly(ADP-ribose) polyme 99.8 1.2E-18 4.3E-23 155.0 8.6 165 102-280 35-220 (221)
9 3smj_A Poly [ADP-ribose] polym 99.7 1.1E-17 3.6E-22 146.1 11.0 166 102-281 7-193 (193)
10 3u9h_A Tankyrase-2; protein-li 99.7 1.8E-16 6.2E-21 142.6 13.1 175 101-283 28-237 (240)
11 3hkv_A PARP-10, poly [ADP-ribo 99.7 9.5E-17 3.2E-21 142.4 10.6 167 103-283 10-201 (217)
12 1wfx_A Probable RNA 2'-phospho 92.3 0.095 3.2E-06 44.8 3.6 38 159-202 92-129 (186)
13 3ess_A Cholix toxin; ADP-ribos 74.5 1.7 5.9E-05 36.5 2.6 50 158-208 52-105 (230)
14 1ikp_A Exotoxin A; transferase 63.3 4.6 0.00016 39.6 3.3 49 158-208 435-485 (613)
15 3q9o_A Exotoxin A, cholix toxi 57.9 5 0.00017 38.9 2.5 50 158-208 463-516 (642)
16 1zbp_A Hypothetical protein VP 45.4 18 0.00063 32.4 4.1 34 3-36 10-43 (273)
No 1
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-78 Score=552.43 Aligned_cols=265 Identities=38% Similarity=0.725 Sum_probs=223.1
Q ss_pred HHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCCCCCCHHHHHHHhccCCChHHHHHhhhcCCCCCCCc
Q psy5396 10 ITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLC 89 (291)
Q Consensus 10 ~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~~~kd~d~L~~~l~~lP~l~~m~~~l~~~~~~~~~~ 89 (291)
++.|+++|++||+||||+||||+|||+|||++++|+|||+.|++++.||||+|+.++++||++.+|.+.+. ..++
T Consensus 4 ~~~l~e~l~rDp~aaDl~~SLFvAAa~SyR~ds~LrPFPp~f~~~d~K~id~L~~~v~~lP~l~~l~~~~~-----~~~~ 78 (277)
T 4f0d_A 4 WAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSG-----DNHK 78 (277)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHSTTHHHHSCSCCGGGBSSSCBCHHHHHHHHHTCCCHHHHHTTCC-----SSCH
T ss_pred HHHHHHHHhhCchhHHHHHHHHHHHHhcccCceeeecCCcccCCCccccHHHHHHHHhcCCChHHHHhccc-----cCCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999987432 2389
Q ss_pred chhHHHHHHHHhCCCeEEeCCcchHHHHHHhhcCCC-CCCCceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCch
Q psy5396 90 DLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEP-NVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLE 168 (291)
Q Consensus 90 ~~~~LL~Wil~s~~~~l~~l~~~e~~~l~~~~~~~~-~~~~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~ 168 (291)
.+++||+|||.++.+.|+.++++||++|+++++.++ |...|++||+|.+.+++ +++|+++++.++ ++||||||+++
T Consensus 79 ~~~~LL~WIL~~~~~~l~~l~k~ef~~l~~~~g~~~~p~~~P~~If~V~~~~~~--~~~f~~~~~~~~-~~~~~HGS~l~ 155 (277)
T 4f0d_A 79 RAWDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPA--NAKFYETKGERD-LIYAFHGSRLE 155 (277)
T ss_dssp HHHHHHHHHTCCSSEEEEECCSHHHHHHHHHTCSCSSCCCCCSEEEEEEECTTH--HHHHHHHHTTSC-EEEEEEECCGG
T ss_pred HHHHHHHHHHhcCCcceEecCHHHHHHHHHHhCCCCCCCCCCceeEEEecCcch--hhHHHHhhccCC-cEEEEcCCcHH
Confidence 999999999999889999999999999999999865 67899999999987776 899999999999 99999999999
Q ss_pred hHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceec---ccchh-h
Q psy5396 169 NFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ---EDTEE-N 244 (291)
Q Consensus 169 N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~---~~~~~-~ 244 (291)
||||||++||++++++|++||+|||||+++++|++||+.+.+|++|.+|..++|||||||||+|+ +++| +|+.+ .
T Consensus 156 n~~sIL~~GL~~~~~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p~-~k~q~~~~~~~~~~ 234 (277)
T 4f0d_A 156 NFHSIIHNGLHCHLNKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPD-VKCQTKKKDSKEID 234 (277)
T ss_dssp GHHHHHHHCSCCC--CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCCC---------------
T ss_pred HHHHHHhcccccCcccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCCc-ceeeeecccccccc
Confidence 99999999999999999999999999999999999999999999999997789999999999999 7766 34443 6
Q ss_pred HhhhhhccCCCCCcCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396 245 RRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK 283 (291)
Q Consensus 245 ~~~~~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~~ 283 (291)
+.|+|+++|++|++|++||||+|++||||||||||++++
T Consensus 235 ~~~~~~~~s~~~~~p~~y~vV~n~~~v~~rYllvy~~~~ 273 (277)
T 4f0d_A 235 RRRARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQKP 273 (277)
T ss_dssp ----------------CCEEECCGGGEEEEEEEEEEC--
T ss_pred ccccccccccCCCCCCCEEEEEccceEEEEEEEEEccCc
Confidence 789999999999999999999999999999999999876
No 2
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=99.92 E-value=1.5e-24 Score=205.19 Aligned_cols=248 Identities=16% Similarity=0.174 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHH---Hhhh
Q psy5396 7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVL---HSQR 80 (291)
Q Consensus 7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~---~~l~ 80 (291)
...|.+|+++|+...... .+..+ |.|+++++ |+.|.. +-..+.+.|.+.++.|-.|.+|. +-+.
T Consensus 49 ~~vL~~i~~~l~~~~~~~-----~l~~l--s~~fyt~I---Ph~fg~~~p~~i~~~~~l~~k~~lle~L~die~A~~l~~ 118 (350)
T 1efy_A 49 YSILNEVQQAVSDGGSES-----QILDL--SNRFYTLI---PHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLR 118 (350)
T ss_dssp HHHHHHHHHHHHTTCCHH-----HHHHH--HHHHHHHS---CBCCCSSCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchH-----HHHHH--HHhHHhhc---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888889988765332 22223 33666664 333321 11236666665555555555552 2222
Q ss_pred cCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC------CCceeeEEEecCCCCchhhhhhhhc
Q psy5396 81 NSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV------AKPDFIFQVQYSPQSSIESNWSKLS 152 (291)
Q Consensus 81 ~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~------~~p~~iF~V~~~~~~~~e~~F~~~~ 152 (291)
... .....+.|...+....|.|.+|+++ ||..|.+++..+... .....||+|+...+ .++|+..+
T Consensus 119 ~~~----~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~~~~t~~~~h~~~~~~I~~I~rV~~~~~---~~~f~~~k 191 (350)
T 1efy_A 119 GGN----EDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGE---SQRYKPFK 191 (350)
T ss_dssp SCC----CCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHHHHHHHTCCGGGCSEEEEEEEEEEEEETTH---HHHHGGGG
T ss_pred hcc----cCCCCChhHHHHHHhCCEEEEcCCCChHHHHHHHHHhcccCCCCCCCcccccceEEecCHHH---HHHHHHhh
Confidence 221 1111355666677767999999765 799999998776532 23567899997654 68898766
Q ss_pred cCCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEee
Q psy5396 153 LGRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSI 228 (291)
Q Consensus 153 ~~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEv 228 (291)
+..+ .+++||||+.+||++|+++||+.++ .+|++||+|||||+++++|.+||..+.. ...++|.||||
T Consensus 192 ~~~n-~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG~GiYfa~~~skS~~Y~~~~~~-------~~~~~m~Lc~V 263 (350)
T 1efy_A 192 QLHN-RQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQA-------DPIGLILLGEV 263 (350)
T ss_dssp GSSC-EEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTSSSEEEBSSHHHHHGGGCCCSS-------SCEEEEEEEEE
T ss_pred ccCC-eeEEEeCCchHHHHHHHHcCCCcccccCCCccCceecccccccchhhhhccccCCCC-------CCeEEEEEEEE
Confidence 6667 9999999999999999999999765 3578999999999999999999976532 23699999999
Q ss_pred ecCCCcceecc-cc-----hh-hHhhhhh----------------------cc--CCCCCcCCeEEEEecCCeeEEEEEE
Q psy5396 229 VDDPDQVKCQE-DT-----EE-NRRRALA----------------------QD--SLGGEVPHKYYVVENSALVKVKYVL 277 (291)
Q Consensus 229 v~~p~~~~~~~-~~-----~~-~~~~~~~----------------------~~--~~~~~~p~~y~VV~n~~~v~~rYLl 277 (291)
+.... ..... +. +. +...+.+ .. ..++.+....|||.|.++|++|||+
T Consensus 264 ~lG~~-~~~~~~~~~~~~p~g~~Sv~g~g~~~Pd~~~~~~~dgv~vP~G~~~~~~~~~~~l~~~EyVVYd~~Qi~p~YLI 342 (350)
T 1efy_A 264 ALGNM-YELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLL 342 (350)
T ss_dssp ECCSE-EEESSCCCCCSCCTTCCEEEECCSEEECGGGCEEETTEEECCSCEEECSCCSSSCSBCEEEESCGGGEEEEEEE
T ss_pred ecCCc-eeccCcchhhhcCCCCcceeeccccCCCccccccCCCeeeecCcccCCCCCCCCCCCCEEEEEchhheeEEEEE
Confidence 86432 11110 00 00 0000000 00 0122333467999999999999999
Q ss_pred EEe
Q psy5396 278 VYT 280 (291)
Q Consensus 278 vy~ 280 (291)
.|.
T Consensus 343 ~~~ 345 (350)
T 1efy_A 343 KLK 345 (350)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 3
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=99.92 E-value=1.1e-24 Score=206.59 Aligned_cols=199 Identities=14% Similarity=0.165 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396 7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVLH--SQRN 81 (291)
Q Consensus 7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~~--~l~~ 81 (291)
...|.+|.++|+......+ +..+ |.|+++++ |+.|.+ +-..+.+.|.+.++.|..|.+|.- .+..
T Consensus 68 ~~vL~~i~~~l~~~~~~~~-----l~~l--sn~fYtlI---Ph~fg~~~pp~I~~~~~l~~k~~lle~L~dieiA~~l~~ 137 (368)
T 3kjd_A 68 YQSLKKIEDCIRAGQHGRA-----LMEA--CNEFYTRI---PHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVK 137 (368)
T ss_dssp HHHHHHHHHHHHTTCCSHH-----HHHH--HHHHHHHS---CBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccchHH-----HHHH--HhhhhhhC---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888887554332 2222 44777764 444422 112466666555555555555522 1222
Q ss_pred CCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCC------CceeeEEEecCCCCchhhhhhhhcc
Q psy5396 82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVA------KPDFIFQVQYSPQSSIESNWSKLSL 153 (291)
Q Consensus 82 ~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~------~p~~iF~V~~~~~~~~e~~F~~~~~ 153 (291)
... ....+.|.+.+.+..|.|..|+++ ||..|.+++..+..++ ....||+|++..+ .++|+ ++
T Consensus 138 ~~~----~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~y~~~T~~~~h~~~~~~I~~IfrI~r~~e---~~~F~--k~ 208 (368)
T 3kjd_A 138 TEL----QSPEHPLDQHYRNLHCALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGE---KEAFR--ED 208 (368)
T ss_dssp --------CCSCHHHHHHHHHTEEEEECCTTSHHHHHHHHHHHHTCCTTCTTCEEEEEEEEEEEETTH---HHHSC--TT
T ss_pred hcc----CCCCChhhHHHHhcCcEEEEcCCCChHHHHHHHHHHhcCCcccCcCceeEEEEEEecchHH---HHHHh--hc
Confidence 211 112366777777777899999775 7999999987766533 3355899999764 57888 23
Q ss_pred CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396 154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV 229 (291)
Q Consensus 154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv 229 (291)
..+ .+++||||+.+||++||++||+.++ .+|++||+|||||+++++|.+||.++.. ...++|.||||+
T Consensus 209 ~~N-~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~~fGkGIYFA~~~skS~~Y~~~~~~-------~~~~~mlLc~V~ 280 (368)
T 3kjd_A 209 LHN-RMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSANYCFASRL-------KNTGLLLLSEVA 280 (368)
T ss_dssp CSC-EEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGSTTCSSEEEBSSHHHHHHTTCCCSS-------SCEEEEEEEEEE
T ss_pred CCC-ceEEEeCCCHHHHHHHHHcCCCcccccccccCceeeeEEEccccccccccccCCCCC-------CCeEEEEEEEEe
Confidence 345 9999999999999999999999865 3578999999999999999999965321 136899999998
Q ss_pred cCC
Q psy5396 230 DDP 232 (291)
Q Consensus 230 ~~p 232 (291)
...
T Consensus 281 lG~ 283 (368)
T 3kjd_A 281 LGQ 283 (368)
T ss_dssp CCS
T ss_pred cCC
Confidence 754
No 4
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=99.92 E-value=7e-24 Score=208.73 Aligned_cols=250 Identities=17% Similarity=0.178 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccC---CCCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396 7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIK---NQHKDISAVLECINQMPLLSSVLH--SQRN 81 (291)
Q Consensus 7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~---~~~kd~d~L~~~l~~lP~l~~m~~--~l~~ 81 (291)
...|.+|.++|+....... +..+ |.|+++++ |+.|.+ +-..+.+.|...++.|-.|.+|.- .+..
T Consensus 194 ~~vL~~i~~~l~~~~~~~~-----l~~l--sn~fYtlI---Ph~fg~~~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~ 263 (506)
T 4dqy_C 194 YSILSEVQQAVSQGSSDSQ-----ILDL--SNRFYTLI---PHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAYSLLR 263 (506)
T ss_dssp HHHHHHHHHHHHTTCCHHH-----HHHH--HHHHHHHS---CBCCTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccccHHH-----HHHH--HhhhhEeC---CccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457788888876533322 2223 34666654 444422 112355655444444444444421 1222
Q ss_pred CCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC------CCceeeEEEecCCCCchhhhhhhhcc
Q psy5396 82 SHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV------AKPDFIFQVQYSPQSSIESNWSKLSL 153 (291)
Q Consensus 82 ~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~------~~p~~iF~V~~~~~~~~e~~F~~~~~ 153 (291)
... .....+.|...+....|.|.+|+++ ||..|.+++..+..+ ....-||+|+...+ .++|+..++
T Consensus 264 ~~~---~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~h~~~~~~I~~I~rI~~~~e---~~~f~~~k~ 337 (506)
T 4dqy_C 264 GGS---DDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGE---CQRYKPFKQ 337 (506)
T ss_dssp CSC---CCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSSCTTCCCCEEEEEEEEETTT---TTTTHHHHS
T ss_pred hhc---cCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcccccCCceeEeEEEEccHHH---HhhHHHhhc
Confidence 211 1123456778888877999999875 799999998776542 35567999999876 478887665
Q ss_pred CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396 154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV 229 (291)
Q Consensus 154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv 229 (291)
..+ .+++||||+..||++||++||+.++ .+|++||+|||||+++++|.+||.++.. ...++|.||||+
T Consensus 338 ~~N-~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS~~Y~~~~~~-------~~~~~mll~~V~ 409 (506)
T 4dqy_C 338 LHN-RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQG-------DPIGLILLGEVA 409 (506)
T ss_dssp SSC-EEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHHHTTSCCCSS-------SCEEEEEEEEEE
T ss_pred CCC-ceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhccccccCCCCC-------CCeEEEEEEEEe
Confidence 566 9999999999999999999999764 3678999999999999999999976532 126899999998
Q ss_pred cCCCcceecc-c----ch--hhHhhhhhc------------------------cCCCCCcCCeEEEEecCCeeEEEEEEE
Q psy5396 230 DDPDQVKCQE-D----TE--ENRRRALAQ------------------------DSLGGEVPHKYYVVENSALVKVKYVLV 278 (291)
Q Consensus 230 ~~p~~~~~~~-~----~~--~~~~~~~~~------------------------~~~~~~~p~~y~VV~n~~~v~~rYLlv 278 (291)
...- +.... + .+ .+...+.++ ...++.+-...|||+|.++|++|||+.
T Consensus 410 lG~~-~~~~~~~~~~~~p~G~dSv~g~g~~~P~p~~~~~~dGv~vP~G~~~~~~~~~~~l~ynEyiVYd~~Qir~rYLv~ 488 (506)
T 4dqy_C 410 LGNM-YELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDTSLLYNEYIVYDIAQVNLKYLLK 488 (506)
T ss_dssp CCSE-EEESSCCCCSSCCTTCCEEEECCSEEECGGGCEESSSCEECCCCEEECSCCCCSCSBCEEEESSGGGEEEEEEEE
T ss_pred cCCc-eecccchhhhccCCCCceEEeCCcCcCCcccccccCCeEEECCCcccCCCCCCcccccceEEEchHHeeEEEEEE
Confidence 7532 22110 0 00 000000000 001234455679999999999999987
Q ss_pred Eec
Q psy5396 279 YTR 281 (291)
Q Consensus 279 y~~ 281 (291)
+.=
T Consensus 489 v~~ 491 (506)
T 4dqy_C 489 LKF 491 (506)
T ss_dssp EEC
T ss_pred EEE
Confidence 653
No 5
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=99.90 E-value=9.3e-24 Score=200.30 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCC---CCCCHHHHHHHhccCCChHHHHH--hhhc
Q psy5396 7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKN---QHKDISAVLECINQMPLLSSVLH--SQRN 81 (291)
Q Consensus 7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~---~~kd~d~L~~~l~~lP~l~~m~~--~l~~ 81 (291)
...|.+|+++|+........+ ..+ |.|+++++ |+.|... -..+.+.|.+.++.|-.|.+|.- .+..
T Consensus 55 ~~vL~~i~~~l~~~~~~~~~~----~~l--s~~fyt~I---Ph~fg~~~p~~i~~~~~l~~k~~lle~l~di~~a~~l~~ 125 (357)
T 3c4h_A 55 FEALEALEEALKGPTDGGQSL----EEL--SSHFYTVI---PHNFGHSQPPPINSPELLQAKKDMLLVLADIELAQALQA 125 (357)
T ss_dssp HHHHHHHHHHHTSCCCSCCCH----HHH--HHHHHHHS---CBCSTTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccchHHH----HHH--HHHHHhhc---CcccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445788888887655433211 112 33666653 4333211 12366666665555555555532 1222
Q ss_pred CCCCCCCcch-----hHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC---CCceeeEEEecCCCCchhhhhhhh
Q psy5396 82 SHPSPKLCDL-----IYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV---AKPDFIFQVQYSPQSSIESNWSKL 151 (291)
Q Consensus 82 ~~~~~~~~~~-----~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~---~~p~~iF~V~~~~~~~~e~~F~~~ 151 (291)
.. .... .+.|...+....|.|.+++++ ||..|.+++..+.+. .....||+|+...+ .++|+..
T Consensus 126 ~~----~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~~~f~~t~~~~~~~~I~~I~rV~n~~~---~~rF~~~ 198 (357)
T 3c4h_A 126 VS----EQEKTVEEVPHPLDRDYQLLKCQLQLLDSGAPEYKVIQTYLEQTGSNHRCPTLQHIWKVNQEGE---EDRFQAH 198 (357)
T ss_dssp CC----HHHHHCSEECCHHHHHHHHHCCEEEECCTTSTTHHHHHHHHHHHSCSSSCCCEEEEEEEECTTS---HHHHHTT
T ss_pred hh----ccccccCCCCChhHHHHHHhCCEEEECCCCChHHHHHHHHHHhcCCCCCCccEEEEEEecCHHH---HHHHHHH
Confidence 11 1111 355666677756899999764 799998887665333 46778999997654 6899987
Q ss_pred ccCCCceEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396 152 SLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD 231 (291)
Q Consensus 152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~ 231 (291)
++..+ .+++||||+.+||.+|+++||+.++++|.+||+|||||+++++|.+||....+.. ...++|.||||+..
T Consensus 199 k~~~n-~~~LfHGt~~~~~~~I~~~Gf~~~~~~g~~fG~GiYfa~~~skS~~Y~~~~~~~~-----~~~~~mllc~V~lG 272 (357)
T 3c4h_A 199 SKLGN-RKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGIYFASENSKSAGYVIGMKCGA-----HHVGYMFLGEVALG 272 (357)
T ss_dssp TTCCC-EEEEEEEECHHHHHHHHHHCSCCCTTCCCTTCSSEEEBSSHHHHHTTCCCEEETT-----EEEEEEEEEEEECC
T ss_pred hccCC-eEEEEeCCChhhHHHHHHcCCcccCCCCCceECCEecCCcchhhhhhcccCCCCC-----CCeEEEEEEEEecC
Confidence 66667 9999999999999999999999888889999999999999999999997221111 23689999999865
Q ss_pred C
Q psy5396 232 P 232 (291)
Q Consensus 232 p 232 (291)
.
T Consensus 273 ~ 273 (357)
T 3c4h_A 273 R 273 (357)
T ss_dssp S
T ss_pred C
Confidence 4
No 6
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=175.73 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=119.7
Q ss_pred CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--CCCceEEEEcCCCchhHHHHHHhc
Q psy5396 102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--GRKKILHAFHGSRLENFHSILNFG 177 (291)
Q Consensus 102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--~~~~~~~afHGS~~~N~~sIL~~G 177 (291)
..|.|.+|+++ ||..|.+++..+.+.....-||+|+.... .++|+..++ ..+ .+++||||+.+||++|+++|
T Consensus 3 ~~~~l~~L~~~s~ey~~v~~~f~~t~~~~~I~~I~rv~n~~~---~~~f~~~k~~~~~n-~~~l~HGt~~~~~~~I~~~G 78 (173)
T 2x5y_A 3 KKYKLSEIHHLHPEYVRVSEHFKASMKNFKIEKIKKIENSEL---LDKFTWKKSQMKEE-GKLLFYATSRAYVESICSNN 78 (173)
T ss_dssp CCCEEEECCTTSHHHHHHHHHHHTTCTTEEEEEEEEEECHHH---HHHHHHHHHHHTCC-CEEEEEEEEGGGHHHHHHHC
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhHCCCCEEeEEEEECCHHH---HHHHHHHHHHHhhC-cEEEEecCCcccHHHHHHhC
Confidence 45778888764 79999999887666666777899887542 578887654 346 99999999999999999999
Q ss_pred ccc--CCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceecccchhhHhhhhhccCCC
Q psy5396 178 LQQ--HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLG 255 (291)
Q Consensus 178 L~~--~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
|+. +..++.+||+|||||+++++|.+||.... + .++|.||||+...- ......-...+ .+.+|.-
T Consensus 79 f~~~~~~~~g~~~G~GiYfa~~~s~s~~Y~~~~~-------~--~~~m~lc~V~~G~~-~~~~~~~~~pp---~~ydSv~ 145 (173)
T 2x5y_A 79 FDSFLHETHENKYGKGIYFAKDAIYSHKNCPYDA-------K--NVVMFVAQVLVGKF-IEGNITYTSPP---PQFDSCV 145 (173)
T ss_dssp CCHHHHCCSCSSSCSSEEEESSHHHHHHHCCSCG-------G--GEEEEEEEECCCSE-EECCTTCSSCC---TTCCEEE
T ss_pred CCCcccCCCcCCccCeEECCCChhhHhhcCCCCC-------C--CeEEEEEEEecCcc-ccCCcccCCCC---CCCCceE
Confidence 953 33568899999999999999999997544 1 48999999997651 22110000000 1233333
Q ss_pred CCcC-CeEEEEecCCeeEEEEEEEEec
Q psy5396 256 GEVP-HKYYVVENSALVKVKYVLVYTR 281 (291)
Q Consensus 256 ~~~p-~~y~VV~n~~~v~~rYLlvy~~ 281 (291)
+..+ .++|||.|++++.++||+.|.+
T Consensus 146 ~~~~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 146 DTRSNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp SCSSSCCEEEECCGGGEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEeCCeEeEEEEEEEeC
Confidence 3332 3579999999999999999975
No 7
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=151.89 Aligned_cols=167 Identities=17% Similarity=0.121 Sum_probs=115.6
Q ss_pred CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc----C-----CCceEEEEcCCCchhH
Q psy5396 102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL----G-----RKKILHAFHGSRLENF 170 (291)
Q Consensus 102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~----~-----~~~~~~afHGS~~~N~ 170 (291)
..+.|.+|+++ ||..|.+++..+.+.....-|++|+.... .++|+..++ + .+ .+++||||+.+||
T Consensus 10 ~~~~l~~L~~~s~Ey~~v~~~f~~t~~~~~I~~I~rv~n~~l---~~~f~~~k~~~~~~~~~~~~n-e~~LfHGt~~~~~ 85 (198)
T 2pqf_A 10 PGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLAL---WEVYQWQKGQMQKQNGGKAVD-ERQLFHGTSAIFV 85 (198)
T ss_dssp CSCEEEECCTTSHHHHHHHHHHHTTCTTSEEEEEEEEECHHH---HHHHHHHHHHHHHTTTTCCCC-EEEEEEECCGGGH
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCCEEEEEEEeCCHHH---HHHHHHHHHHHHHhcCCCCcc-eEEEEecCCHHHH
Confidence 56788888775 79999999887666566667788776432 567765432 1 24 9999999999999
Q ss_pred HHHHHhccccC--CCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----ccchh
Q psy5396 171 HSILNFGLQQH--FNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----EDTEE 243 (291)
Q Consensus 171 ~sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~~~~~ 243 (291)
.+|+++||+.. ..++.+||+|||||+++++|.+||.... | .++|.||+|+...- .+.. ++...
T Consensus 86 ~~I~~~Gf~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~-------~--~~~m~lcrV~~G~~-~~~~~~~~~pp~~~ 155 (198)
T 2pqf_A 86 DAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDT-------Q--THTMFLARVLVGEF-VRGNASFVRPPAKE 155 (198)
T ss_dssp HHHHHHCCCTTTTCCCSSCSCSSEEEESSHHHHHTTCCCSS-------S--EEEEEEEEEECCSE-EECCTTCSSCCBCS
T ss_pred HHHHHhCCCCcccCCCCCcccCeEECcCCcchhhhcccCCC-------C--ceEEEEEEEecCCc-ccCCccccCCCCCC
Confidence 99999999743 3357899999999999999999997543 2 58999999986432 1110 00000
Q ss_pred hHhhhhhccCCCCCc-CCeEEEEecCCeeEEEEEEEEecCC
Q psy5396 244 NRRRALAQDSLGGEV-PHKYYVVENSALVKVKYVLVYTRHK 283 (291)
Q Consensus 244 ~~~~~~~~~~~~~~~-p~~y~VV~n~~~v~~rYLlvy~~~~ 283 (291)
.......+|.-+.. -.+.|||.|++++.++||+.|....
T Consensus 156 -~~~~~~yDSvv~~~~~~~e~VVy~~~qiyP~YlI~y~~~~ 195 (198)
T 2pqf_A 156 -GWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYTTSS 195 (198)
T ss_dssp -CC--CBCSEEESCSSSCCEEEESCGGGEEEEEEEEEESCC
T ss_pred -CCCCCCcccCcCCCCCCCEEEEECCCcEeeEEEEEEEcCC
Confidence 00000111111111 1256999999999999999997643
No 8
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=99.75 E-value=1.2e-18 Score=154.96 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCchhHH
Q psy5396 102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLENFH 171 (291)
Q Consensus 102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~N~~ 171 (291)
..+.|..|+++ ||..|.+++..+.+.....-||+|+.... .++|+..++ ..+ .+++||||+.+||.
T Consensus 35 ~~~~l~~L~~~s~ey~~V~~~f~~t~~~~~I~~I~rV~n~~l---~~~f~~~k~~~~~k~~~~~n-e~lLfHGt~~~~~~ 110 (221)
T 3blj_A 35 QLFCMVQLEPGQSEYNTIKDKFTRTCSSYAIEKIERIQNAFL---WQSYQVKKRQMDIKNDHKNN-ERLLFHGTDADSVP 110 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHTTSEEEEEEEEEEHHH---HHHHHHHHHHHHHHSSSCCC-EEEEEEEECGGGHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHhhCCCCEEEEEEEEcChhH---HHHHHHHHHHHHHhcCCCCc-eEEEeccCChHHHH
Confidence 45778888764 78888888765444455667788876432 567765432 234 99999999999999
Q ss_pred HHHHhccccC--CCCCcccCceeEEecccccccc--ccCCCCCCCCCCCCccccEEEEEeeecCCC-----cceecccch
Q psy5396 172 SILNFGLQQH--FNKNSLFGQGIYLSSQLGICLI--YSPYSAGWGGSCVGSELSIVSLCSIVDDPD-----QVKCQEDTE 242 (291)
Q Consensus 172 sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~--ys~~~~~w~~S~~g~~l~~valcEvv~~p~-----~~~~~~~~~ 242 (291)
+|+++||+.. ..++.+||+|||||++.++|.+ ||..+.. ..++|.||+|+...- ..+. .++.
T Consensus 111 ~I~~~Gf~~~~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~~~--------g~~~mllcrV~~G~~~~g~~~~~~-pp~~ 181 (221)
T 3blj_A 111 YVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDTYSKPDSN--------GRKHMYVVRVLTGVFTKGRAGLVT-PPPK 181 (221)
T ss_dssp HHHHHCCCTTTC-----CCCSSEEEESSHHHHHSTTTSCCCTT--------SCEEEEEEEEECCSEEECCTTCSS-CCBS
T ss_pred HHHHhCCCCcccCCCCCccCCeEECCcchhhhcCcccccCCCC--------CcEEEEEEEEEeCCccCCChhccC-CCcc
Confidence 9999999853 2347799999999999999998 7755421 258999999987531 1110 0000
Q ss_pred hhHhhhhhccCCCC--CcCCeEEEEecCCeeEEEEEEEEe
Q psy5396 243 ENRRRALAQDSLGG--EVPHKYYVVENSALVKVKYVLVYT 280 (291)
Q Consensus 243 ~~~~~~~~~~~~~~--~~p~~y~VV~n~~~v~~rYLlvy~ 280 (291)
.........+|.-+ ..| +.|||.|.+++.++||+.|.
T Consensus 182 ~~~~~~~~yDSvv~~~~~~-~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 182 NPHNPTDLFDSVTNNTRSP-KLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp STTSTTSBCSEEESCSSSC-SEEEECSTTSEEEEEEEEEE
T ss_pred cCCCCCCCCCccccCCCCC-CEEEEEcCCeEeeeEEEEEE
Confidence 00000011122211 123 45899999999999999996
No 9
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=99.73 E-value=1.1e-17 Score=146.10 Aligned_cols=166 Identities=13% Similarity=0.162 Sum_probs=111.2
Q ss_pred CCCeEEeCCcc--hHHHHHHhhcCCCCCCCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCchhHH
Q psy5396 102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLENFH 171 (291)
Q Consensus 102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~N~~ 171 (291)
..+.|.+|+++ ||+.|.++...+.+.....-|++|+.... .++|+..++ ..+ .+++|||++.+||.
T Consensus 7 ~~~~l~~L~~~s~Ey~~V~~~f~~t~~~~~I~~I~rI~n~~l---~~~f~~~k~~~~~k~~~~~n-e~~L~HGt~~~~~~ 82 (193)
T 3smj_A 7 QNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDL---WNSYQAKKKTMDAKNGQTMN-EKQLFHGTDAGSVP 82 (193)
T ss_dssp CCEEEEECCTTSTTHHHHHHHHHHHHTTSEEEEEEEEECHHH---HHHHHHHHHHHHHHSTTCCC-EEEEEEEECGGGHH
T ss_pred CCEEEEECCCCChHHHHHHHHHHhhCCCCeEEEEEEECCHHH---HHHHHHHHHHHHHhcCCCCC-eEEEEeCCCHHHHH
Confidence 34667777664 78888888765444556777888876432 577775432 134 99999999999999
Q ss_pred HHHHhccccC--CCCCcccCceeEEecccccccc--ccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----ccch
Q psy5396 172 SILNFGLQQH--FNKNSLFGQGIYLSSQLGICLI--YSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----EDTE 242 (291)
Q Consensus 172 sIL~~GL~~~--~~~~~~~G~GiYls~~~~~S~~--ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~~~~ 242 (291)
+|+++||+.. ...+.+||+|||||++.++|.+ ||.... ...++|.||+|+...- .+.. .++.
T Consensus 83 ~I~~~Gf~~~~~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~~--------~g~~~mllcrV~~G~~-~~g~~~~~~pP~~ 153 (193)
T 3smj_A 83 HVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDTYSRPDA--------NGRKHVYYVRVLTGIY-THGNHSLIVPPSK 153 (193)
T ss_dssp HHHHHTTCCCCTTGGGSSSCCCEEEESSHHHHTSTTTSCCCT--------TSCEEEEEEEEECCSE-EECCSSCCSCCBS
T ss_pred HHHHcCCCCccCCCCccccCCeEEecCCcchhcCccccCCCC--------CCcEEEEEEEEEeccc-ccCCCccCCCCCc
Confidence 9999999743 2347899999999999999999 543321 1258899999987531 1111 0110
Q ss_pred hhHhhhhhccCCCCC--cCCeEEEEecCCeeEEEEEEEEec
Q psy5396 243 ENRRRALAQDSLGGE--VPHKYYVVENSALVKVKYVLVYTR 281 (291)
Q Consensus 243 ~~~~~~~~~~~~~~~--~p~~y~VV~n~~~v~~rYLlvy~~ 281 (291)
.........+|.-++ .| ..|||.+++++.+.||+.|.+
T Consensus 154 ~~~~~~~~yDSvv~~~~~p-~~~VVf~~~qiyP~YlI~y~~ 193 (193)
T 3smj_A 154 NPQNPTDLYDTVTDNVHHP-SLFVAFYDYQAYPEYLITFRK 193 (193)
T ss_dssp CTTSTTCBCSEEESCSSSC-SEEEECSTTCEEEEEEEEEEC
T ss_pred cCCCCCCCccceeCCCCCC-CEEEEEeCCceeeEEEEEEeC
Confidence 000001112222222 23 469999999999999999964
No 10
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=99.69 E-value=1.8e-16 Score=142.62 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=111.6
Q ss_pred hCCCeEEeCCcc--hHHHHHHhhcCCCCC-------------CCceeeEEEecCCCCchhhhhhhhcc--------CCCc
Q psy5396 101 EQSPSLEEVPRD--QYDSVLNLVSCEPNV-------------AKPDFIFQVQYSPQSSIESNWSKLSL--------GRKK 157 (291)
Q Consensus 101 s~~~~l~~l~~~--e~~~l~~~~~~~~~~-------------~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~ 157 (291)
+..+.|..|+++ ||+.|.++...+... ....-|++|+.... .++|+..++ ..+
T Consensus 28 ~~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l---~~~y~~~k~~m~~~~~~~~n- 103 (240)
T 3u9h_A 28 GSGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKL---WERYTHRRKEVSEENHNHAN- 103 (240)
T ss_dssp --CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHH---HHHHHHHHHHHHHTTTTCCC-
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhH---HHHHHHHHHHHHHhcCCCCc-
Confidence 356888888775 799999888665321 23345677776432 567765432 234
Q ss_pred eEEEEcCCCchhHHHHHHhccccCC-CCCcccCceeEEeccccccccccCCC---CCCC-C--CCCCccccEEEEEeeec
Q psy5396 158 ILHAFHGSRLENFHSILNFGLQQHF-NKNSLFGQGIYLSSQLGICLIYSPYS---AGWG-G--SCVGSELSIVSLCSIVD 230 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~GL~~~~-~~~~~~G~GiYls~~~~~S~~ys~~~---~~w~-~--S~~g~~l~~valcEvv~ 230 (291)
.+++|||++ ++.+|+++||+... .++.+||+|||||++.++|..||... .+.+ + ..+....++|.||||+.
T Consensus 104 e~~LfHGt~--~~~~I~~~Gf~~~~~~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~l 181 (240)
T 3u9h_A 104 ERMLFHGSP--FVNAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTL 181 (240)
T ss_dssp EEEEEECCT--THHHHHHHCCCGGGCBTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEEC
T ss_pred eEEEEechH--hHHHHHHcCCCcccccCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEec
Confidence 999999998 57799999998653 45789999999999999999999642 1111 1 11112369999999987
Q ss_pred CCCcceecccch-h--hHhhhh--hccCCCCCcCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396 231 DPDQVKCQEDTE-E--NRRRAL--AQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHK 283 (291)
Q Consensus 231 ~p~~~~~~~~~~-~--~~~~~~--~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~~ 283 (291)
... .+...+.. . .+.... +..+.+ .+-.+.|||.|++++.++||+.|.-..
T Consensus 182 G~~-~~~~~~~~~~~pP~gyDSvvg~~~~~-~l~~~E~VVy~~~qi~P~YlI~y~~~~ 237 (240)
T 3u9h_A 182 GKS-FLQFSAMKMAHSPPGHHSVTGRPSVN-GLALAEYVIYRGEQAYPEYLITYQIMR 237 (240)
T ss_dssp CSE-EEEEECC--CCCCTTCSEEEEEESSC-TTCCCEEEESCGGGEEEEEEEEEEECC
T ss_pred Cce-EeecCcccccCCCCCCCceecCCCCC-CCCCCEEEEEcccceeEEEEEEEEccC
Confidence 653 22111100 0 000000 111111 122346999999999999999997543
No 11
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=99.68 E-value=9.5e-17 Score=142.41 Aligned_cols=167 Identities=13% Similarity=0.179 Sum_probs=111.6
Q ss_pred CCeEEeCCcc--hHHHHHHhhcCCCCC----CCceeeEEEecCCCCchhhhhhhhcc--------CCCceEEEEcCCCch
Q psy5396 103 SPSLEEVPRD--QYDSVLNLVSCEPNV----AKPDFIFQVQYSPQSSIESNWSKLSL--------GRKKILHAFHGSRLE 168 (291)
Q Consensus 103 ~~~l~~l~~~--e~~~l~~~~~~~~~~----~~p~~iF~V~~~~~~~~e~~F~~~~~--------~~~~~~~afHGS~~~ 168 (291)
.|.|..|+++ ||+.|.++...+... ....-|++|+... ..++|+..++ ..+ .+++|||++.+
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~~~~~I~~I~RIqn~~---l~~~f~~~k~~m~~k~~~~~n-e~~LfHGt~~~ 85 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAARSSIRVVRVERVSHPL---LQQQYELYRERLLQRCERRPV-EQVLYHGTTAP 85 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGGGTEEEEEEEEECCHH---HHHHHHHHHHHHHHHCCSSCS-EEEEEEEECGG
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcCCCceEEEEEEECChh---HHHHHHHHHHHHHHhcCCCCc-eEEEEeCCCHH
Confidence 4777778765 799998887664332 3445567766532 2577775432 234 99999999999
Q ss_pred hHHHHHHhcccc--CCCCCcccCceeEEeccccccc--cccCCCCCCCCCCCCccccEEEEEeeecCCCcceec-----c
Q psy5396 169 NFHSILNFGLQQ--HFNKNSLFGQGIYLSSQLGICL--IYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQ-----E 239 (291)
Q Consensus 169 N~~sIL~~GL~~--~~~~~~~~G~GiYls~~~~~S~--~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~~-----~ 239 (291)
|+.+|+++||+. +..++.+||+|||||++.++|. .||.... ...++|.||+|+...- .+.. .
T Consensus 86 ~~~~I~~~GF~~~~~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~~--------~g~~~m~lcrVl~G~~-~~g~~~~~~P 156 (217)
T 3hkv_A 86 AVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNA--------DGHKAVFVARVLTGDY-GQGRRGLRAP 156 (217)
T ss_dssp GHHHHHHHCSCTTTSCCCCCTTCSSEEEESSHHHHTSTTTSCCCT--------TSEEEEEEEEEECCSE-EECCTTCSSS
T ss_pred HHHHHHhcCCcccccCcchhccccceeccCCcccccccccccccC--------CCceEEEEEEEEcccc-ccCCCccCCC
Confidence 999999999963 3345789999999999999997 5875432 1258999999987542 2111 0
Q ss_pred cchhhHhhhhhccCCCCC--cCCeEEEEecCCeeEEEEEEEEecCC
Q psy5396 240 DTEENRRRALAQDSLGGE--VPHKYYVVENSALVKVKYVLVYTRHK 283 (291)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~--~p~~y~VV~n~~~v~~rYLlvy~~~~ 283 (291)
++..........+|.-++ .| +.|||.+.+++.+.||+.|....
T Consensus 157 P~~~~~~~~~~yDSvvd~~~np-~~~VVf~~~qiyPeYLI~y~~~~ 201 (217)
T 3hkv_A 157 PLRGPGHVLLRYDSAMDCICQP-SIFVIFHDTQALPTHLITCEHVP 201 (217)
T ss_dssp CBCCTTCSSSBCSEEESCSSSC-CEEEECCTTSEEEEEEEEEEECC
T ss_pred CCCccCCCCCceeEEECCCCCC-CEEEEEcCCcCceeEEEEEecCC
Confidence 000000000112222222 23 56999999999999999998765
No 12
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=92.30 E-value=0.095 Score=44.83 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.4
Q ss_pred EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccc
Q psy5396 159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICL 202 (291)
Q Consensus 159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~ 202 (291)
-++|||+...||-+|+.+||..| -...|.||.+..++.
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~m------~R~hVHLs~~~~~a~ 129 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMRG------RRLKVHLTSSLEDAV 129 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCCC------SSSSEEEESCHHHHH
T ss_pred CEEEEeCCHHHHHHHHHhCCCCC------CCCEEEEecCCCCCe
Confidence 38899999999999999999854 235789999877663
No 13
>3ess_A Cholix toxin; ADP-ribosyl transferase, domain III (C-terminal catalytic domain), alpha-beta complex, transferase, transferase,toxin; HET: 18N; 1.19A {Vibrio cholerae} PDB: 2q6m_A* 3ki3_A* 3ki1_A* 3ki0_A* 3ki2_A* 3ki4_A* 3ki5_A* 3ki6_A* 3ki7_A* 3ny6_A*
Probab=74.51 E-value=1.7 Score=36.51 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=36.7
Q ss_pred eEEEEcCCCchhHHHHHHh--ccccCCCC--CcccCceeEEeccccccccccCCC
Q psy5396 158 ILHAFHGSRLENFHSILNF--GLQQHFNK--NSLFGQGIYLSSQLGICLIYSPYS 208 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~--GL~~~~~~--~~~~G~GiYls~~~~~S~~ys~~~ 208 (291)
++.+|||+..+-=.||... |.--..++ ...+ .|+|.|.|.+++.+|..-.
T Consensus 52 VFVGYHGT~~vAAQsIV~~i~~v~Rg~~te~e~~W-~GlYvatda~vAyGYAr~q 105 (230)
T 3ess_A 52 VFVGYHGTNHVAAQTIVNRIAPVPRGNNTENEEKW-GGLYVATHAEVAHGYARIK 105 (230)
T ss_dssp EEEEEEEECHHHHHHHHHCCCCC---------CTT-CSEEEBSSHHHHHTTSSCC
T ss_pred EEEeeccchHHHHHHHHhccCCCccCCccchHHHh-CceEecCChHHhcchheec
Confidence 8999999999999999975 43211222 2355 4899999999999999753
No 14
>1ikp_A Exotoxin A; transferase; 1.45A {Pseudomonas aeruginosa} SCOP: b.29.1.7 d.166.1.1 f.1.5.1 PDB: 1ikq_A 1xk9_A* 1dma_A* 1aer_A* 1zm9_B* 1zm3_B* 1zm2_B* 1zm4_B* 2zit_B* 3b82_B* 3b78_B* 3b8h_B*
Probab=63.31 E-value=4.6 Score=39.62 Aligned_cols=49 Identities=20% Similarity=0.472 Sum_probs=40.9
Q ss_pred eEEEEcCCCchhHHHHHHhccccCCCC--CcccCceeEEeccccccccccCCC
Q psy5396 158 ILHAFHGSRLENFHSILNFGLQQHFNK--NSLFGQGIYLSSQLGICLIYSPYS 208 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~GL~~~~~~--~~~~G~GiYls~~~~~S~~ys~~~ 208 (291)
++.+|||+..+-=.||...|.+- .++ .+.+ .|+|.|.+.+++.+|..-.
T Consensus 435 vfvgyhgt~~~aaq~iv~~~vr~-~~~~~~~~w-~g~y~~~~~~~a~gya~~~ 485 (613)
T 1ikp_A 435 VFVGYHGTFLEAAQSIVFGGVRA-RSQDLDAIW-RGFYIAGDPALAYGYAQDQ 485 (613)
T ss_dssp EEEEEEEECHHHHHHHHHTCCCC-CCCSSCGGG-CSEEEBSSHHHHHTTSBCS
T ss_pred EEEeeccchHHHhHHHhcCCccC-CCcchHHHh-CceEeccChHHhcchhhcc
Confidence 89999999999999999999863 333 2355 4999999999999999754
No 15
>3q9o_A Exotoxin A, cholix toxin; receptor binding domain, beta barrel, translocation, six ALP bundle, alpha-beta complex, ADP-ribosylating factor; HET: NAD; 1.79A {Vibrio cholerae} PDB: 2q5t_A*
Probab=57.90 E-value=5 Score=38.94 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=38.6
Q ss_pred eEEEEcCCCchhHHHHHHh--ccccCCCC--CcccCceeEEeccccccccccCCC
Q psy5396 158 ILHAFHGSRLENFHSILNF--GLQQHFNK--NSLFGQGIYLSSQLGICLIYSPYS 208 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~--GL~~~~~~--~~~~G~GiYls~~~~~S~~ys~~~ 208 (291)
++.+|||+..+-=.||... |.--..++ ...+ .|+|.|.+.+++.+|..-.
T Consensus 463 vfvgyhgt~~~aaqsiv~~~~~~~r~~~~~~~~~w-~g~yva~~~~~a~gya~~~ 516 (642)
T 3q9o_A 463 VFVGYHGTNHVAAQTIVNRIAPVPRGNNTENEEKW-GGLYVATHAEVAHGYARIK 516 (642)
T ss_dssp EEEEEEEECHHHHHHHHHCCCCCCCTTCCHHHHTT-CSEEEBSSHHHHHTTSSCC
T ss_pred EEEeeccchHHHHHHHHhccCCCcCCCccchHHHh-CceEeccChHHhcchhhcc
Confidence 8999999999999999985 53222233 1355 3899999999999999753
No 16
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=45.43 E-value=18 Score=32.39 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=29.8
Q ss_pred CchHHHHHHHHHHHHHhCccchhHHHHHHHHHhh
Q psy5396 3 PSDIDVKITELKQILAWNKLGCDIKWSIFVSACQ 36 (291)
Q Consensus 3 ~~~~~~~~~~l~~~L~~d~~~~Dll~slf~aAa~ 36 (291)
..+++.++..+++.|+.+|..+|+++.||===|.
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv 43 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI 43 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh
Confidence 4678999999999999999999999999865554
Done!