RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5396
(291 letters)
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15,
structural genomics structural genomics consortium, SGC;
HET: 3AB; 2.70A {Homo sapiens}
Length = 277
Score = 192 bits (488), Expect = 2e-60
Identities = 100/278 (35%), Positives = 162/278 (58%), Gaps = 12/278 (4%)
Query: 11 TELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQHKDISAVLECINQMP 70
++ + L D++ S+F SA QSY+ S L PFP + + KD A+L +++P
Sbjct: 5 AAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLP 64
Query: 71 LLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC-EPNVAK 129
L +L S ++H L+ W+L + ++ + +++ + L V
Sbjct: 65 NLKELLQSSGDNHKRA-----WDLVSWILSSKVLTIHSAGKAEFEKIQKLTGAPHTPVPA 119
Query: 130 PDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFG 189
PDF+F+++Y + + + + G + +++AFHGSRLENFHSI++ GL H NK SLFG
Sbjct: 120 PDFLFEIEYFDPA--NAKFYETK-GERDLIYAFHGSRLENFHSIIHNGLHCHLNKTSLFG 176
Query: 190 QGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPD---QVKCQEDTEENRR 246
+G YL+S L + LIYSP+ GW S +G LS V++C ++D PD Q K ++ E +RR
Sbjct: 177 EGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHPDVKCQTKKKDSKEIDRR 236
Query: 247 RALAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRHKV 284
RA + S GG++P KY+VV N+ L++VKY+LVY++
Sbjct: 237 RARIKHSEGGDIPPKYFVVTNNQLLRVKYLLVYSQKPP 274
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 49.3 bits (117), Expect = 5e-07
Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 36/262 (13%)
Query: 49 PMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSL 106
P + N + +L+ + + + S+L + L +
Sbjct: 88 PPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDS 147
Query: 107 EEVPRDQYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHG 164
EE + V + D + + ES K +HG
Sbjct: 148 EE-----AKIIKQYVKNTHAATHNAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHG 202
Query: 165 SRLENFHSILNFGLQQHFNKNS----LFGQGIYLSSQLGICLIYSPYSAGWGGSC----- 215
SR NF IL+ GL+ + +FG+GIY + + Y S
Sbjct: 203 SRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIGLILLGE 262
Query: 216 --VGSELSIVSLCSIVDDP---DQVKCQEDTEENRRRALAQDS----LGGEVPHKY---- 262
+G+ + + I P VK T + D LG +
Sbjct: 263 VALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGISTGINDTC 322
Query: 263 -----YVVENSALVKVKYVLVY 279
Y+V + A V +KY+L
Sbjct: 323 LLYNEYIVYDVAQVNLKYLLKL 344
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 43.3 bits (101), Expect = 5e-05
Identities = 48/275 (17%), Positives = 86/275 (31%), Gaps = 36/275 (13%)
Query: 48 PPMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPS 105
P + N + + +L+ + + + S+L + + L +
Sbjct: 232 KPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRD 291
Query: 106 LEEVPRDQYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFH 163
EE + + V + D + + E K +H
Sbjct: 292 SEE-----AEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWH 346
Query: 164 GSRLENFHSILNFGLQQHFNKNS----LFGQGIYLSSQLGICLIYSPYSAGWGGSC---- 215
GSR NF IL+ GL+ + +FG+GIY + + Y S G
Sbjct: 347 GSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLG 406
Query: 216 ---VGSELSIVSLCSIVDDP---DQVKCQEDTEENRRRALAQDS----LGGEVPHKY--- 262
+G+ + I P VK T + ++ D LG +
Sbjct: 407 EVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSANISLDGVDVPLGTGISSGVNDT 466
Query: 263 ------YVVENSALVKVKYVLVYTRHKVTASHQVH 291
Y+V + A V +KY+L + T+ H
Sbjct: 467 SLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLWLEH 501
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic
fragment, structural GEN structural genomics consortium,
SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A*
3ce0_A* 3fhb_A*
Length = 357
Score = 42.4 bits (99), Expect = 9e-05
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGI 192
I++V E + + +HG+ + +IL GL+ + G+GI
Sbjct: 183 IWKVNQE----GEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPHSGGRVGKGI 238
Query: 193 YLSSQLGICLIYSPYSAGWG 212
Y +S+ Y
Sbjct: 239 YFASENSKSAGYVIGMKCGA 258
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 42.1 bits (98), Expect = 1e-04
Identities = 40/278 (14%), Positives = 84/278 (30%), Gaps = 51/278 (18%)
Query: 39 RVSSCLHPFPPMFIKNQH--KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLH 96
R+ P I+ Q + +LE + + + ++ ++ S P D Y
Sbjct: 97 RIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIKLVKTELQSPEHP--LDQHYRNL 154
Query: 97 WLLVEQSPSLEEVPRD--QYDSVLNLV--SCEPNVAKPDFIFQVQYSPQSSIESNWSKLS 152
+L + + ++ + + + P + + + E
Sbjct: 155 HC------ALRPLDHESYEFKVISQYLQSTHAPTHSDYTMTLLDLFEVEKDGE--KEAFR 206
Query: 153 LGRKKILHAFHGSRLENFHSILNFGLQ----QHFNKNSLFGQGIYLSSQLGICLIYSPYS 208
+ +HGSR+ N+ IL+ GL+ + +FG+GIY + Y S
Sbjct: 207 EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGYMFGKGIYFADMSSKSANYCFAS 266
Query: 209 AGWGGSC-------VGSELSIVSLCSIVDDP----DQVKCQEDTEENRRRALAQDSLGGE 257
+G ++ + K + + + G
Sbjct: 267 RLKNTGLLLLSEVALGQCNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTLN--GST 324
Query: 258 VPHKY------------------YVVENSALVKVKYVL 277
VP Y+V N V+++Y+L
Sbjct: 325 VPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLL 362
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex,
catalytic fragment, structural GEN structural genomics
consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo
sapiens}
Length = 198
Score = 39.6 bits (92), Expect = 4e-04
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 160 HAFHGSRLENFHSILNFGLQQ--HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVG 217
FHG+ +I + +G+G Y + YS
Sbjct: 75 QLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTH---TM 131
Query: 218 SELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVP-HKYYVVENSALVKVKYV 276
++ + + V+ + DS V +V+ V +YV
Sbjct: 132 FLARVLVGEFVRGNASFVRPPAKEGWSNAFY---DSCVNSVSDPSIFVIFEKHQVYPEYV 188
Query: 277 LVYTR 281
+ YT
Sbjct: 189 IQYTT 193
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense,
immune system, transferase; 1.05A {Homo sapiens}
Length = 173
Score = 38.1 bits (88), Expect = 0.001
Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 22/182 (12%)
Query: 106 LEEVPRDQ--YDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFH 163
L E+ Y V K + I +++ ++ K S +++ F+
Sbjct: 7 LSEIHHLHPEYVRVSEHFKASMKNFKIEKIKKIE--NSELLDKFTWKKSQMKEEGKLLFY 64
Query: 164 GSRLENFHSILNFGLQQ--HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELS 221
+ SI + H + +G+GIY + PY A V
Sbjct: 65 ATSRAYVESICSNNFDSFLHETHENKYGKGIYFAKDAIYSHKNCPYDAKNVVMFVAQ--- 121
Query: 222 IVSLC-SIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPH-KYYVVENSALVKVKYVLVY 279
V + I + DS + +V+ V +YV+ Y
Sbjct: 122 -VLVGKFIEGNITYTSPPPQF----------DSCVDTRSNPSVFVIFQKDQVYPQYVIEY 170
Query: 280 TR 281
T
Sbjct: 171 TE 172
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold,
transferase, NAD+, ADP-ribosylat transferase-transferase
inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB:
3goy_A* 3smi_A* 3se2_A*
Length = 193
Score = 36.9 bits (85), Expect = 0.003
Identities = 21/190 (11%), Positives = 59/190 (31%), Gaps = 11/190 (5%)
Query: 101 EQSPSLEEVPRD--QYDSVLNLVSCEPNVAKPDFIFQVQ----YSPQSSIESNWSKLSLG 154
+Q+ + E+ +Y++V + + + + + I ++Q ++ + + +
Sbjct: 6 QQNFCVVELLPSDPEYNTVASKFNQTCSHFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQ 65
Query: 155 RKKILHAFHGSRLENFHSILNFGLQQHFNKNS--LFGQGIYLSSQLGICLIYSPYSAGWG 212
FHG+ + + G + + + +G+G Y + + YS
Sbjct: 66 TMNEKQLFHGTDAGSVPHVNRNGFNRSYAGKNAVAYGKGTYFAVNANYSANDT-YSRPDA 124
Query: 213 GSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVP-HKYYVVENSALV 271
V + L D++ V +V
Sbjct: 125 NGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLY-DTVTDNVHHPSLFVAFYDYQA 183
Query: 272 KVKYVLVYTR 281
+Y++ + +
Sbjct: 184 YPEYLITFRK 193
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.005
Identities = 58/363 (15%), Positives = 104/363 (28%), Gaps = 133/363 (36%)
Query: 9 KITELKQILAWNKL------------GCDIKWSIFVSACQSYRVSSCLHPFPPMF---IK 53
+L+Q L +L G K + + C SY+V C F +F +K
Sbjct: 136 PYLKLRQALL--ELRPAKNVLIDGVLGSG-KTWVALDVCLSYKV-QCKMDF-KIFWLNLK 190
Query: 54 NQHKDISAVLECINQMPLLSSVLHSQRNSHPS--PKLCD-----LIYLLHW------LLV 100
N + VLE + ++ + R+ H S L LL LLV
Sbjct: 191 NCNSP-ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 101 EQSPSLEEV------------------PRDQ--YDSVLNLVSCEPNVAKPDFIFQ----- 135
L V R + D + + ++
Sbjct: 250 -----LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 136 ------------------VQYSPQ--SSI-ES---------NWSKLSLGRKKILHAFHGS 165
+ +P+ S I ES NW ++ K+ S
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC--DKLTTIIESS 362
Query: 166 RLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSL 225
L ++ F++ S+F ++ + L + LI W + +V+
Sbjct: 363 -LNVLEPAE---YRKMFDRLSVFPPSAHIPTIL-LSLI-------WFDVIKSDVMVVVNK 410
Query: 226 C---SIVD-DPD-------------QVKCQEDTEENRR--------RALAQDSLGGEVPH 260
S+V+ P +VK + + +R + D L
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 261 KYY 263
+Y+
Sbjct: 471 QYF 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.027
Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 84/236 (35%)
Query: 37 SYRVSSCLHPFPPMFIKNQHKDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLI--YL 94
V + FI +Q ++ + +P + + P+ +L+ +L
Sbjct: 19 VLLVPTASF-----FIASQLQE-----QFNKILPEPTEGFAAD--DEPTTPA-ELVGKFL 65
Query: 95 LHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQY-------SPQSSIESN 147
+ V S +E Q+D VLNL E F+ Y + + +
Sbjct: 66 GY---V--SSLVEPSKVGQFDQVLNLCLTE---------FENCYLEGNDIHALAAKLLQE 111
Query: 148 WSKLSLGRKKILHAF--------------HGSRL------ENFHSILNFGLQQHFNKNSL 187
+ K+++ + S L N + FG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG---------- 161
Query: 188 FGQGI---YLSSQLGICL--IYSPYSAGWGGSCVGS--ELSIVSLCSIVDDPDQVK 236
GQG Y L +Y Y VG + S +L ++ +
Sbjct: 162 -GQGNTDDYFEE-----LRDLYQTYH-----VLVGDLIKFSAETLSELIRTTLDAE 206
Score = 27.3 bits (60), Expect = 7.0
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 22/39 (56%)
Query: 253 SLGGEVPHKYYVVENSALV----------KVKYVLVYTR 281
SLG E +AL V+ +V+ R
Sbjct: 1763 SLG----------EYAALASLADVMSIESLVE--VVFYR 1789
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE
consortium, glycosyltransferase, NAD, nucleus; 2.20A
{Homo sapiens} PDB: 3gey_A*
Length = 221
Score = 34.3 bits (78), Expect = 0.028
Identities = 24/195 (12%), Positives = 58/195 (29%), Gaps = 12/195 (6%)
Query: 96 HWLLV-EQSPSLEEVPRDQ--YDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNWSKLS 152
HW + Q + ++ Q Y+++ + + + + I ++Q + +
Sbjct: 28 HWTDMNHQLFCMVQLEPGQSEYNTIKDKFTRTCSSYAIEKIERIQNAFLWQSYQVKKRQM 87
Query: 153 LGRKK----ILHAFHGSRLENFHSILNFGLQQHFNKNS--LFGQGIYLSSQLGICLIYSP 206
+ FHG+ ++ + G + + +G+G Y + +
Sbjct: 88 DIKNDHKNNERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFAVDASYSAKDT- 146
Query: 207 YSAGWGGSCVGSELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVP-HKYYVV 265
YS + V + DS+ K +VV
Sbjct: 147 YSKPDSNGRKHMYVVRVLTGVFT-KGRAGLVTPPPKNPHNPTDLFDSVTNNTRSPKLFVV 205
Query: 266 ENSALVKVKYVLVYT 280
+Y++ +T
Sbjct: 206 FFDNQAYPEYLITFT 220
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase,
structural genomics, structural genomics consortium,
SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A
{Homo sapiens}
Length = 217
Score = 30.0 bits (67), Expect = 0.65
Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 162 FHGSRLENFHSILNFGLQQHFNKNSL--FGQGIYLSSQLGICLIYSPYSAGWGGSCVGSE 219
+HG+ I G + F + +G+G+Y + + + + G
Sbjct: 79 YHGTTAPAVPDICAHGFNRSFCGRNATVYGKGVYFAKRASLSVQDRYSPPNADGHKAVFV 138
Query: 220 LSIVSLCSIVDDPDQVKCQEDTEENRRRALAQDS-LGGEVPHKYYVVENSALVKVKYVLV 278
+++ L DS + +V+ + +++
Sbjct: 139 ARVLTGDYGQGRRGLR--APPLRGPGHVLLRYDSAMDCICQPSIFVIFHDTQALPTHLIT 196
Query: 279 YTR 281
Sbjct: 197 CEH 199
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 28.7 bits (65), Expect = 2.0
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
Query: 57 KDISAVLECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQ-SPSLEEVPRDQYD 115
+ V+ IN+ + R L +++ LLH + + Q SP+ +
Sbjct: 259 ANGERVMALINEA--------AARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIE 310
Query: 116 SVL 118
+
Sbjct: 311 LRM 313
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold,
transfer ribosylation; HET: SO4; 1.75A {Homo sapiens}
PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A*
3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A*
3uh2_A* 3uh4_A* 4dvi_A*
Length = 240
Score = 27.8 bits (61), Expect = 3.8
Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 16/134 (11%)
Query: 162 FHGSRLENFHSILNFGLQQ-HFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSEL 220
FHGS N +I++ G + H +FG GIY + Y G G V +
Sbjct: 108 FHGSPFVN--AIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDR 165
Query: 221 SI------VSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKY-----YVVENSA 269
S + C + ++ + S+ G YV+
Sbjct: 166 SCYICHRQLLFCRVTLGKSFLQFSAMKMAHSPPG--HHSVTGRPSVNGLALAEYVIYRGE 223
Query: 270 LVKVKYVLVYTRHK 283
+Y++ Y +
Sbjct: 224 QAYPEYLITYQIMR 237
>1mhm_B Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent
pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP:
d.156.1.1
Length = 72
Score = 26.2 bits (58), Expect = 3.8
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 102 QSPSLEEVPRDQYDSVLNLVSCE 124
L + + Q D +L C
Sbjct: 33 NGKGLRSLSKAQLDEILGPAECT 55
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein
1; structural genomics, signal transduction,
phosphorylation, PTB domain, NPPSFA; 1.90A {Mus
musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Length = 140
Score = 27.3 bits (60), Expect = 4.2
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 110 PRDQYDSVLNLVSCEPNVAKPD-FIFQVQYSP----QSSIESNWSKLSLGRKK 157
PR + S+L LV EP A+PD FQ + I+ GR +
Sbjct: 87 PRGRSRSLLLLVCQEPERAQPDVHFFQGLLLGAELIREDIQGALQNYRSGRGE 139
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 6.4
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 12/31 (38%)
Query: 179 QQHFNKNSLFGQGIYLSSQLGICLIYSPYSA 209
+Q K L + L + Y+ SA
Sbjct: 19 KQALKK---------LQASLKL---YADDSA 37
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 27.3 bits (60), Expect = 7.7
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 3 PSDIDVKITE--LKQILAWNKLGCDIKWSIFVSA 34
SDI++KI + LKQI++ NK+ D++ +F++
Sbjct: 519 LSDINLKIDDIALKQIMSKNKV-IDVRGPVFLNV 551
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 26.9 bits (60), Expect = 9.0
Identities = 4/30 (13%), Positives = 8/30 (26%)
Query: 155 RKKILHAFHGSRLENFHSILNFGLQQHFNK 184
+ G L + + LQ+
Sbjct: 109 NDTFIKTLQGHALNSLTESMMENLQRIMRP 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.414
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,247,469
Number of extensions: 228965
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 21
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.4 bits)