RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5396
         (291 letters)



>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase,
           C-terminal domain {Chicken (Gallus gallus) [TaxId:
           9031]}
          Length = 215

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 27/148 (18%)

Query: 159 LHAFHGSRLENFHSILNFGLQ----QHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGS 214
              +HGSR  NF  IL+ GL+    +      +FG+GIY +  +     Y   S      
Sbjct: 62  QLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQADPIG 121

Query: 215 CVG-----------------------SELSIVSLCSIVDDPDQVKCQEDTEENRRRALAQ 251
            +                         + S+  L     DP      +  E      ++ 
Sbjct: 122 LILLGEVALGNMYELKNASHITKLPKGKHSVKGLGKTAPDPTATTTLDGVEVPLGNGIST 181

Query: 252 DSLGGEVPHKYYVVENSALVKVKYVLVY 279
                 + +  Y+V + A V +KY+L  
Sbjct: 182 GINDTCLLYNEYIVYDVAQVNLKYLLKL 209


>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 217

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 12/98 (12%)

Query: 133 IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQ----QHFNKNSLF 188
           +F+V+       E    +  L  + +L  +HGSRL N+  IL+ GL+    +      +F
Sbjct: 40  VFEVE----KEGEKEAFREDLPNRMLL--WHGSRLSNWVGILSHGLRVAPPEAPITGYMF 93

Query: 189 GQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLC 226
           G+GIY +        Y   S       +   LS V+L 
Sbjct: 94  GKGIYFADMSSKSANYCFASRLKNTGLLL--LSEVALG 129


>d2axtb1 f.55.1.1 (B:2-489) Photosystem II core light harvesting
           protein PsbB {Thermosynechococcus elongatus [TaxId:
           146786]}
          Length = 488

 Score = 26.7 bits (59), Expect = 4.3
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 150 KLSLGRKKILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSA 209
           + +L   K+    H         +L FG         LFG G+++S   G+     P + 
Sbjct: 129 EPALDLPKMFG-IHLF----LAGLLCFGFGAFHLTG-LFGPGMWVSDPYGLTGSVQPVAP 182

Query: 210 GWGG 213
            WG 
Sbjct: 183 EWGP 186


>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
           {Potato (Solanum tuberosum) [TaxId: 4113]}
          Length = 323

 Score = 26.4 bits (58), Expect = 4.4
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 102 QSPSLEEVPRDQYDSVLNLVSCE 124
               L  + + Q D +L    C 
Sbjct: 19  NGKGLRSLSKAQLDEILGPAECT 41


>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus
           influenzae [TaxId: 727]}
          Length = 241

 Score = 26.2 bits (57), Expect = 4.4
 Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 4/123 (3%)

Query: 64  ECINQMPLLSSVLHSQRNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSC 123
           E     P+L+S  HS    H +     L YLL   L           R+  +        
Sbjct: 15  ELAENEPMLASFFHSTILKHQNLGGA-LSYLLANKLANPIMP-AISLREIIEEAYQSNPS 72

Query: 124 EPNVAKPDF--IFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNFGLQQH 181
             + A  D   +     + +               +     H    +N  S+  +   Q 
Sbjct: 73  IIDCAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQI 132

Query: 182 FNK 184
              
Sbjct: 133 SVA 135


>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium cellulolyticum [TaxId: 1521]}
          Length = 629

 Score = 26.3 bits (58), Expect = 5.5
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 16/59 (27%)

Query: 90  DLIYLLHWLLVEQSPSLEEVPRDQYDSVLNLVSCEPNVAKPDFIFQVQYSPQSSIESNW 148
            ++Y +HW+L               D+     +     +KP +I   Q   Q   ES W
Sbjct: 147 SMLYGMHWIL-------------DVDNWYGFGARADGTSKPSYINTFQRGEQ---ESTW 189


>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
           {Pseudonocardia thermophila [TaxId: 1848]}
          Length = 203

 Score = 25.5 bits (56), Expect = 6.5
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 243 ENRRRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYT 280
            +   A  +  +GG        VEN+   +V +V+V T
Sbjct: 73  ADGTEACKELGIGGLQGEDMMWVENTD--EVHHVVVCT 108


>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 325

 Score = 25.7 bits (56), Expect = 7.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 103 SPSLEEVPRDQYDSVLNLVSCE 124
           S  L  +PR ++D +L  V C 
Sbjct: 25  SGDLRTIPRSEWDILLKDVQCS 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,771
Number of extensions: 46913
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 10
Length of query: 291
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 206
Effective length of database: 1,240,546
Effective search space: 255552476
Effective search space used: 255552476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)