BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5397
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
 pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase
 pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase
 pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
           Imp, Gdp And Mg
 pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
           Imp, Gdp And Mg
 pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With
           6-Phosphoryl-Imp, Gdp And Hadacidin
 pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
           Synthetase Ligated With Gtp
 pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
 pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
 pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Amp
 pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
           Complex With Gtp, 2'-Deoxy-Imp
          Length = 457

 Score = 28.5 bits (62), Expect = 0.88,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 13  HEYVNNTPKKLKIIDAYLFYILLTGAFQFLYCCLVGTFPFNSFLSGFISCVSSFVLGVCL 72
           +E ++  PKK          +L+ GA   L     GT+PF       ++  +  V GVC 
Sbjct: 240 YEALHGPPKK----------VLVEGANAALLDIDFGTYPF-------VTSSNCTVGGVCT 282

Query: 73  RLQVNPQNQKDFVGI 87
            L + PQN  D  G+
Sbjct: 283 GLGIPPQNIGDVYGV 297


>pdb|2V40|A Chain A, Human Adenylosuccinate Synthetase Isozyme 2 In Complex
           With Gdp
          Length = 459

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 13  HEYVNNTPKKLKIIDAYLFYILLTGAFQFLYCCLVGTFPFNSFLSGFISCVSSFVLGVCL 72
           +E ++  PKK          IL+ GA   L     GT+PF       ++  +  V GVC 
Sbjct: 242 YEALHGPPKK----------ILVEGANAALLDIDFGTYPF-------VTSSNCTVGGVCT 284

Query: 73  RLQVNPQNQKDFVGI 87
            L + PQN  +  G+
Sbjct: 285 GLGMPPQNVGEVYGV 299


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.334    0.149    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,453,643
Number of Sequences: 62578
Number of extensions: 127935
Number of successful extensions: 265
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 2
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 45 (21.9 bits)