Query psy5397
Match_columns 112
No_of_seqs 111 out of 183
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 01:32:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mp7_B Preprotein translocase 56.1 12 0.00042 23.5 3.4 43 1-43 1-51 (61)
2 3lho_A Putative hydrolase; str 36.8 24 0.0008 28.0 3.0 27 2-28 4-30 (267)
3 4e17_B Catenin alpha-1; four h 22.4 43 0.0015 19.7 1.6 17 3-19 23-39 (40)
4 1lql_A OSMC, osmotical inducib 20.5 81 0.0028 22.1 3.1 31 48-78 63-93 (166)
5 1ukk_A Osmotically inducible p 19.5 1E+02 0.0035 20.8 3.4 32 48-79 43-74 (142)
6 1qwi_A OSMC, osmotically induc 19.4 1.1E+02 0.0036 20.6 3.5 32 48-79 45-76 (143)
7 2pn2_A Uncharacterized protein 19.1 1.1E+02 0.0038 21.1 3.6 31 48-78 58-88 (155)
8 2e8e_A Hypothetical protein AQ 19.0 79 0.0027 20.8 2.7 31 48-78 31-61 (132)
9 3eer_A Organic hydroperoxide r 19.0 1.1E+02 0.0039 20.8 3.6 31 48-78 50-80 (148)
10 1ml8_A Hypothetical protein (C 18.5 87 0.003 20.7 2.8 30 48-77 33-62 (134)
No 1
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=56.10 E-value=12 Score=23.45 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHHhh-----CCCchH---HHHHHHHHHHHHHHHHHHHH
Q psy5397 1 MAGFQAVLGKIHHEYVN-----NTPKKL---KIIDAYLFYILLTGAFQFLY 43 (112)
Q Consensus 1 ~~~~~~i~~~~~~~Y~~-----~Tp~rl---KliD~fl~fl~~~giiQf~Y 43 (112)
|+++.+.+++++++|+. +.|.|= |+.=+-.+=.++.|.+.|+-
T Consensus 1 m~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 1 MAELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp -------CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999965 467553 34444455556667776653
No 2
>3lho_A Putative hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: PG4; 1.80A {Shewanella frigidimarina}
Probab=36.78 E-value=24 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=22.4
Q ss_pred ccHHHHHHHHHHHHhhCCCchHHHHHH
Q psy5397 2 AGFQAVLGKIHHEYVNNTPKKLKIIDA 28 (112)
Q Consensus 2 ~~~~~i~~~~~~~Y~~~Tp~rlKliD~ 28 (112)
..++.+++.+|++|.+.+|.--|+.|.
T Consensus 4 ~~~~~l~~~Lw~~Y~~~~P~a~~i~~l 30 (267)
T 3lho_A 4 TDVNALFAALWQDYIKMTPSAAKIHQL 30 (267)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 458899999999999999977776654
No 3
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.39 E-value=43 Score=19.68 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhhCC
Q psy5397 3 GFQAVLGKIHHEYVNNT 19 (112)
Q Consensus 3 ~~~~i~~~~~~~Y~~~T 19 (112)
+++..++++..+|.+++
T Consensus 23 avrqALQdLlseY~~~~ 39 (40)
T 4e17_B 23 AVRQALQDLLSEYMGNA 39 (40)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 57889999999998863
No 4
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=20.54 E-value=81 Score=22.08 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=27.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNP 78 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~ 78 (112)
|.=|...|++|..+|.+..+..++=|..+..
T Consensus 63 g~nP~ELllaalaaC~~~~~~~~a~~~gi~~ 93 (166)
T 1lql_A 63 GFGPLAALLSGLAACELATANLMAPAKMITI 93 (166)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 6789999999999999999999888877653
No 5
>1ukk_A Osmotically inducible protein C; peroxidase, cysteinesulfinic acid, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.60A {Thermus thermophilus} SCOP: d.227.1.1
Probab=19.52 E-value=1e+02 Score=20.78 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=28.0
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccCC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNPQ 79 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~~ 79 (112)
|+-|...+++|..+|.+.-+..++=|..+.++
T Consensus 43 g~nP~eLl~aalaaC~~~~~~~~a~~~g~~~~ 74 (142)
T 1ukk_A 43 GTNPEELIAAAHAGAFSMALAASLEREGFPPK 74 (142)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 67899999999999999999999888877643
No 6
>1qwi_A OSMC, osmotically inducible protein; hydroperoxide resistance, hydroperoxide reductase; 1.80A {Escherichia coli} SCOP: d.227.1.1
Probab=19.45 E-value=1.1e+02 Score=20.63 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=27.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccCC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNPQ 79 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~~ 79 (112)
|+-|...+++|..+|.+..+..++=|..+..+
T Consensus 45 g~nP~eLllaala~C~~~~~~~~a~~~g~~~~ 76 (143)
T 1qwi_A 45 GTNPEELIGAAHAACFSMALSLMLGEAGFTPT 76 (143)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 57899999999999999999998888877643
No 7
>2pn2_A Uncharacterized protein; putative osmotic stress induced and detoxification response structural genomics; 1.95A {Psychrobacter arcticus} SCOP: d.227.1.1
Probab=19.14 E-value=1.1e+02 Score=21.10 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=26.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNP 78 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~ 78 (112)
|.=|...+++|..+|.+..+..++=|..+..
T Consensus 58 g~nP~eLllaAlaaC~~~~~~~~a~~~gi~~ 88 (155)
T 2pn2_A 58 AFSPTDLLATSLASCMLTIIGIKARDMEIDI 88 (155)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 5679999999999999999998888777654
No 8
>2e8e_A Hypothetical protein AQ_1549; osmatically induced protein; 1.70A {Aquifex aeolicus} PDB: 2e8c_A 2e8f_A 2egt_A
Probab=19.04 E-value=79 Score=20.82 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=27.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNP 78 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~ 78 (112)
|.=|...+++|..+|.+.-+..++=|..+.+
T Consensus 31 g~nP~eLllaala~C~~~~~~~~a~~~~~~~ 61 (132)
T 2e8e_A 31 GLNPMELLLVSIGSCSGVDVYHILKKKRQEV 61 (132)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHhhHHHHHHHHHHHCCCCc
Confidence 6789999999999999999999888877653
No 9
>3eer_A Organic hydroperoxide resistance protein, putativ; csgid, ORHC, struc genomics; 1.45A {Vibrio cholerae o1 biovar el tor} SCOP: d.227.1.0 PDB: 3i07_A* 3lus_A*
Probab=18.98 E-value=1.1e+02 Score=20.82 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=27.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNP 78 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~ 78 (112)
|.-|...|++|..+|.+..+..++=|..+..
T Consensus 50 g~nP~eLllaalaaC~~~~~~~~a~~~gi~~ 80 (148)
T 3eer_A 50 ATNPEQLFAVGYAACFSNAILHVAREAKVAL 80 (148)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 5779999999999999999999888877754
No 10
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=18.49 E-value=87 Score=20.68 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=26.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhcc
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVN 77 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~ 77 (112)
|.-|...+++|..+|.+..+..++=|..+.
T Consensus 33 g~nP~eLllaala~C~~~~~~~~a~~~~~~ 62 (134)
T 1ml8_A 33 APSPMEMVLMAAGGCSAIDVVSILQKGRQD 62 (134)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHhccHHHHHHHHHHHcCCC
Confidence 567999999999999999999888777664
Done!