Query psy5397
Match_columns 112
No_of_seqs 111 out of 183
Neff 4.1
Searched_HMMs 13730
Date Sat Aug 17 01:32:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5397.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5397hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 28.8 21 0.0015 24.0 3.1 29 53-81 8-41 (292)
2 d2onfa1 d.227.1.1 (A:1-139) Hy 18.3 49 0.0036 20.3 3.2 30 48-77 39-68 (139)
3 d1ukka_ d.227.1.1 (A:) Hypothe 18.2 55 0.004 20.2 3.4 30 48-77 42-71 (141)
4 d1u6za3 c.55.1.8 (A:136-312) E 18.2 24 0.0018 22.5 1.6 32 76-109 117-148 (177)
5 d3dxoa1 d.17.4.19 (A:1-117) Un 14.9 58 0.0042 19.1 2.7 28 1-28 1-29 (117)
6 d1nekd_ f.21.2.2 (D:) Succinat 14.8 64 0.0047 19.8 3.0 15 8-22 74-88 (113)
7 d3d32a1 d.15.1.3 (A:1-118) GAB 14.4 38 0.0028 21.7 1.8 19 62-80 58-76 (118)
8 d3ec9a1 d.17.4.10 (A:10-139) U 13.7 62 0.0045 18.6 2.6 18 1-18 1-18 (130)
9 d2pn2a1 d.227.1.1 (A:1-132) Un 13.5 94 0.0069 18.6 3.6 31 48-78 39-69 (132)
10 d1eo6a_ d.15.1.3 (A:) Golgi-as 13.2 43 0.0031 21.4 1.8 23 61-84 55-77 (116)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=28.80 E-value=21 Score=24.05 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHH-----hhhhhhccCCCC
Q psy5397 53 NSFLSGFISCVSSFVLG-----VCLRLQVNPQNQ 81 (112)
Q Consensus 53 NaFLsgf~s~VG~fVL~-----vsLR~Q~~~~nk 81 (112)
..||+|.+|++-+-+++ +-.|+|+.+.++
T Consensus 8 ~~~laG~~a~~i~~~~~~Pld~iK~r~Q~~~~~~ 41 (292)
T d1okca_ 8 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK 41 (292)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCCC
Confidence 45777776666555443 789999976654
No 2
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=18.29 E-value=49 Score=20.27 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.6
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhcc
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVN 77 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~ 77 (112)
|.-|..-++|+..+|.+..+..++=|.++.
T Consensus 39 g~~P~elllaala~C~~~~~~~~a~~~~i~ 68 (139)
T d2onfa1 39 QLYPETLFPSVLASCLLTTFLEFKDRMGIN 68 (139)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567999999999999999998877777654
No 3
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=18.23 E-value=55 Score=20.20 Aligned_cols=30 Identities=20% Similarity=0.173 Sum_probs=25.2
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhcc
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVN 77 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~ 77 (112)
|.=|...++++..+|.+..+..+.=|+.+.
T Consensus 42 gp~P~elllaala~C~~~~~~~~a~~~g~~ 71 (141)
T d1ukka_ 42 GTNPEELIAAAHAGCFSMALAASLEREGFP 71 (141)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 566999999999999999888877666654
No 4
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}
Probab=18.16 E-value=24 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=20.6
Q ss_pred ccCCCCCccCCCCCchHHHHHHHHHHHHHHhhhc
Q psy5397 76 VNPQNQKDFVGISPERGFADFIFAHVILHLVVMN 109 (112)
Q Consensus 76 ~~~~nk~~F~~iS~eRAfaDfv~~slvLh~~v~n 109 (112)
.+++.....++++|+| +|-+.+.+++.--+++
T Consensus 117 ~~~~~~~~~~gl~~~R--ad~i~~g~~il~~il~ 148 (177)
T d1u6za3 117 HRNFASLSLPGLSEER--KTVFVPGLAILCGVFD 148 (177)
T ss_dssp CSBGGGCCCTTCCTTG--GGTHHHHHHHHHHHHH
T ss_pred CChHHHHHhcccChhh--hhhHHHHHHHHHHHHH
Confidence 3444445678999999 5777776665544443
No 5
>d3dxoa1 d.17.4.19 (A:1-117) Uncharacterized protein Atu0744 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=14.86 E-value=58 Score=19.06 Aligned_cols=28 Identities=4% Similarity=0.137 Sum_probs=21.5
Q ss_pred CccHHHHHHHHHHHHhhCCCch-HHHHHH
Q psy5397 1 MAGFQAVLGKIHHEYVNNTPKK-LKIIDA 28 (112)
Q Consensus 1 ~~~~~~i~~~~~~~Y~~~Tp~r-lKliD~ 28 (112)
|+...+++++..+.+.+..|.| +..++.
T Consensus 1 mt~~~~~~~~y~~awn~~d~~~~~~~l~~ 29 (117)
T d3dxoa1 1 MTQHLTIAQTYLAAWNEEDNERRRHLVGQ 29 (117)
T ss_dssp CHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhccCchhhHHHHHH
Confidence 7778888888888888877765 555555
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=14.83 E-value=64 Score=19.75 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCCch
Q psy5397 8 LGKIHHEYVNNTPKK 22 (112)
Q Consensus 8 ~~~~~~~Y~~~Tp~r 22 (112)
++++.|+|.++.+.|
T Consensus 74 l~~IieDYi~~~~~r 88 (113)
T d1nekd_ 74 MWQVLTDYVKPLALR 88 (113)
T ss_dssp HHHHHHHHCCSHHHH
T ss_pred HhhhHHHhcCChhHH
Confidence 577889998843333
No 7
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.41 E-value=38 Score=21.73 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=16.8
Q ss_pred HHHHHHHHhhhhhhccCCC
Q psy5397 62 CVSSFVLGVCLRLQVNPQN 80 (112)
Q Consensus 62 ~VG~fVL~vsLR~Q~~~~n 80 (112)
+||||+-.+-=|++++|+.
T Consensus 58 tv~qf~~~iRkrl~l~~~~ 76 (118)
T d3d32a1 58 TVGQFYFLIRKRIHLRAED 76 (118)
T ss_dssp BHHHHHHHHHHHHTCCTTS
T ss_pred cHHHHHHHHHHHhCCCccc
Confidence 7899999999999998763
No 8
>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051 {Burkholderia thailandensis [TaxId: 57975]}
Probab=13.69 E-value=62 Score=18.58 Aligned_cols=18 Identities=6% Similarity=-0.103 Sum_probs=15.5
Q ss_pred CccHHHHHHHHHHHHhhC
Q psy5397 1 MAGFQAVLGKIHHEYVNN 18 (112)
Q Consensus 1 ~~~~~~i~~~~~~~Y~~~ 18 (112)
|.+..++++++|+.|.+.
T Consensus 1 m~t~~~iv~~~~~A~~~~ 18 (130)
T d3ec9a1 1 MRTPYQIVADHYAASDRH 18 (130)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCc
Confidence 778889999999999774
No 9
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=13.46 E-value=94 Score=18.65 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=25.9
Q ss_pred cCCchhhHHHHHHHHHHHHHHHhhhhhhccC
Q psy5397 48 GTFPFNSFLSGFISCVSSFVLGVCLRLQVNP 78 (112)
Q Consensus 48 gtfPFNaFLsgf~s~VG~fVL~vsLR~Q~~~ 78 (112)
|.=|..-++++..+|.+..+..++=+..++.
T Consensus 39 g~~P~eLllaala~C~~~~~~~~a~~~gi~~ 69 (132)
T d2pn2a1 39 AFSPTDLLATSLASCMLTIIGIKARDMEIDI 69 (132)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4579999999999999999888877776653
No 10
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.20 E-value=43 Score=21.42 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhccCCCCCcc
Q psy5397 61 SCVSSFVLGVCLRLQVNPQNQKDF 84 (112)
Q Consensus 61 s~VG~fVL~vsLR~Q~~~~nk~~F 84 (112)
.++|||+-++==|++++|+ ++.|
T Consensus 55 ltv~qf~~vIRkrl~l~~~-~alf 77 (116)
T d1eo6a_ 55 ITVAQFMWIIRKRIQLPSE-KAIF 77 (116)
T ss_dssp SBHHHHHHHHHHHHTCCTT-SCCE
T ss_pred CcHHHHHHHHHHHcCCCcc-ceEE
Confidence 4789999999999999875 3444
Done!