RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5397
         (112 letters)



>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural
          genomics, NPPSFA, national project on protein
          structural and functional analyses; NMR {Homo sapiens}
          Length = 91

 Score = 26.9 bits (59), Expect = 0.77
 Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 1/26 (3%)

Query: 73 RLQVN-PQNQKDFVGISPERGFADFI 97
          R+ +N  + QK  V +SP     +  
Sbjct: 12 RVVINFKKTQKTIVRVSPHASLQELA 37


>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
          methyltransferase, structural genomics, NPPSFA; HET:
          SFG; 2.55A {Pyrococcus horikoshii}
          Length = 450

 Score = 26.9 bits (60), Expect = 1.7
 Identities = 5/23 (21%), Positives = 8/23 (34%)

Query: 21 KKLKIIDAYLFYILLTGAFQFLY 43
              I+D +L   L       L+
Sbjct: 77 VTPLILDPWLRAALRVAVDIALF 99


>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
          methyltransferase-fold, RNA-binding domain; 1.65A
          {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
          Length = 429

 Score = 26.7 bits (60), Expect = 1.8
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 21 KKLKIIDAYLFYILLTGAFQFLY 43
          + +      + Y+++ G +Q LY
Sbjct: 68 RPMTGKQRTVHYLIMVGLYQLLY 90


>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
           biosynthesis, heme, iron, synthesis, lyase,
           metal-binding, oxylipin biosynthesis; HET: HEM T25;
           1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
           3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
          Length = 495

 Score = 25.3 bits (55), Expect = 5.3
 Identities = 9/46 (19%), Positives = 20/46 (43%)

Query: 15  YVNNTPKKLKIIDAYLFYILLTGAFQFLYCCLVGTFPFNSFLSGFI 60
           ++   P+ + ++D   F +L           L GT+  ++ L+G  
Sbjct: 79  FIAENPQVVALLDGKSFPVLFDVDKVEKKDLLTGTYMPSTELTGGY 124


>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
           {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
           1j08_A
          Length = 226

 Score = 25.1 bits (54), Expect = 6.5
 Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 67  VLGV-CLRLQVNPQNQKDFVGISPERGFADFIFAHV 101
           V+ V  + +QVN +++ +F G  PE+ F + + + +
Sbjct: 190 VMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSAL 225


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.334    0.149    0.470 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,786,351
Number of extensions: 92481
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 11
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.4 bits)