RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5397
         (112 letters)



>d1zsqa2 c.45.1.3 (A:199-585) Myotubularin-related protein 2,
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 387

 Score = 24.1 bits (52), Expect = 5.1
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 34  LLTGAFQFLYCCLVGTFPFNS 54
            L      LY CL GTF  NS
Sbjct: 306 FLITILDHLYSCLFGTFLCNS 326


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 23.9 bits (51), Expect = 5.5
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 79  QNQKDFVGISPERGFADFIFAHVILHLVVMNF 110
           +     +GIS       F     ILHL  + F
Sbjct: 247 RQACTLLGISDSYQMGIFRILAGILHLGNVEF 278


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.149    0.470 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,764
Number of extensions: 17790
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 9
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.4 bits)