BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5399
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 162 bits (411), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 15 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 74
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 75 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 134
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLTCSL
Sbjct: 135 RLKRFSMVVQDGIVKALNVEPDGTGLTCSL 164
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 162 bits (411), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 16 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 75
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 76 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 135
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLTCSL
Sbjct: 136 RLKRFSMVVQDGIVKALNVEPDGTGLTCSL 165
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 162 bits (410), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 77/150 (51%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 4 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 63
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 64 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 123
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLTCSL
Sbjct: 124 RLKRFSMVVQDGIVKALNVEPDGTGLTCSL 153
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 16 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 75
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + ++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 76 AKGVQVVASLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 135
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLTCSL
Sbjct: 136 RLKRFSMVVQDGIVKALNVEPDGTGLTCSL 165
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 159 bits (403), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPG S THLPG++ + + LK
Sbjct: 15 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGSSKTHLPGFVEQAEALK 74
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 75 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 134
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLTCSL
Sbjct: 135 RLKRFSMVVQDGIVKALNVEPDGTGLTCSL 164
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 3/150 (2%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 15 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 74
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV---EHEIPVLGGW 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + + + G
Sbjct: 75 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 134
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
R KR+SMVV DG + LN+EPDGTGLT SL
Sbjct: 135 RLKRFSMVVQDGIVKALNVEPDGTGLTXSL 164
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
M + GD LP + TP K+ +A+ GKK ++F VPGAFTPG S THLPGY+ +
Sbjct: 1 MPIKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAA 60
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP-VLGG 119
+ KG+ I C+AVND+FVM+AW + + A+ K++ LADP FTK + +E ++ VLG
Sbjct: 61 AIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGN 120
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTGLTCSL 150
RSKRYS+V++DG +T++N+EPDG GLTCSL
Sbjct: 121 VRSKRYSLVIEDGVVTKVNVEPDGKGLTCSL 151
>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
pdb|2XHF|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
Length = 171
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +PD L++E+ P I D +G+K I+F V GAF PG S H+P YL+ K
Sbjct: 15 KVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPG-SNNHIPEYLSLYDKFK 73
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP-VLGGWRS 122
+G H I CIAVND FVM AW + + E KIR LAD + EFT+ LG E + +LG RS
Sbjct: 74 EEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRS 133
Query: 123 KRYSMVVDDGKITQLNIEPDGTGLTCSL 150
+RY+M++DD KI ++ EPD TGL C L
Sbjct: 134 RRYAMLIDDNKIRSVSTEPDITGLACLL 161
>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
pdb|4F82|B Chain B, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
Length = 176
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 10/150 (6%)
Query: 4 QVGDTLPDALLHENTPQTK---------IQIADAIKGKKVIIFGVPGAFTPGCSVTHLPG 54
QVGD LPDA L E + + D + GK+V+IFG+PGAFTP CS H+PG
Sbjct: 11 QVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPG 70
Query: 55 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI 114
Y+ + L+A GI EI+C++VNDAFVM AW R + GK+R +AD + FT LG+ ++
Sbjct: 71 YVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDL 130
Query: 115 PVLG-GWRSKRYSMVVDDGKITQLNIEPDG 143
G G RS RY+MV+D G + L +E G
Sbjct: 131 SARGMGIRSLRYAMVIDGGVVKTLAVEAPG 160
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 97/155 (62%), Gaps = 4/155 (2%)
Query: 5 VGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKD 61
VGD LPD A E ++ + + GKKVI+FGVPGAFTP CS+ H+PG++ K +
Sbjct: 6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGE 65
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GW 120
LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T LG+E ++ G G
Sbjct: 66 LKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGT 125
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDELK 155
RS+R++++VDD K+ NIE G S D LK
Sbjct: 126 RSRRFALLVDDLKVKAANIEGGGEFTVSSAEDILK 160
>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|B Chain B, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|C Chain C, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
Length = 184
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 5 VGDTLPDALLHENTPQTKIQIADAI--KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62
VGD LP+A E T +++ + KGK+V++F VPGAFTP CS+ HLPGYL +
Sbjct: 28 VGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAI 87
Query: 63 KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPV-LGGWR 121
A+G+ +I +AVND V AW + GKI FL+D N FTK +G E ++ G R
Sbjct: 88 LARGVDDIAVVAVNDLHVXGAWATHSGGXGKIHFLSDWNAAFTKAIGXEIDLSAGTLGIR 147
Query: 122 SKRYSMVVDDGKITQLNIE 140
SKRYS +V+DG + LNIE
Sbjct: 148 SKRYSXLVEDGVVKALNIE 166
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 25 IADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW 84
+ D K KKV+IFG+PGA+T CS H+P Y KAKG+ + C+A+ND + + AW
Sbjct: 37 VNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAW 96
Query: 85 CRKNNAEGKIRFLADPNLEFTKKLGVEHEIPV-LGGWRSKRYSMVVDDGKITQLNIEPDG 143
K A+ I F D + F K L + ++ L G RS+R+S V DGK+ LN+E
Sbjct: 97 AEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESP 156
Query: 144 TGLTCS 149
+ + S
Sbjct: 157 SDVKVS 162
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 23 IQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82
+ ++ K VI+F +PGAFTP CS +HLP Y K G+ +I ++VND FV
Sbjct: 25 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVXN 84
Query: 83 AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEP 141
AW +E I F+ D N EFT+ G LG G RS RYS +V +G + + IEP
Sbjct: 85 AWKEDEKSE-NISFIPDGNGEFTEGXGXLVGKEDLGFGKRSWRYSXLVKNGVVEKXFIEP 143
Query: 142 DGTG 145
+ G
Sbjct: 144 NEPG 147
>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSR|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
Length = 184
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKN 88
+ KKVII G P AF+P C+V+H+PGY+ +L K K + ++ + V++ F +AW +
Sbjct: 53 ENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSL 112
Query: 89 NAEGK--IRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTG 145
+ I+F +DP FTK +G E + G + S R++MVV++G +T E + GT
Sbjct: 113 GVKDTTHIKFASDPGCAFTKSIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTD 171
Query: 146 LTCSLVDEL 154
+T S V+ +
Sbjct: 172 VTVSSVESV 180
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKN 88
+ KKVII G P AF+P C+V+H+PGY+ +L K K + ++ + V++ F +AW +
Sbjct: 68 ENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSL 127
Query: 89 NAEG--KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTG 145
+ I+F +DP FTK +G E + G + S R++MVV++G +T E + GT
Sbjct: 128 GVKDTTHIKFASDPGCAFTKSIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTD 186
Query: 146 LTCSLVDEL 154
+T S V+ +
Sbjct: 187 VTVSSVESV 195
>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 176
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKN 88
+ KKVII G P AF+P +V+H+PGY+ +L K K + ++ + V++ F +AW +
Sbjct: 45 ENKKVIITGAPAAFSPTSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSL 104
Query: 89 NAEGK--IRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTG 145
+ I+F +DP FTK +G E + G + S R++MVV++G +T E + GT
Sbjct: 105 GVKDTTHIKFASDPGCAFTKSIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTD 163
Query: 146 LTCSLVDEL 154
+T S V+ +
Sbjct: 164 VTVSSVESV 172
>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
pdb|1XIY|B Chain B, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
Length = 182
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 5/125 (4%)
Query: 21 TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKD--LKAKGIHEIFCIAVNDA 78
T I + KK+++ +PGAFTP S +PGY +E D +K +I+CI ND
Sbjct: 33 TSIDTHELFNNKKILLISLPGAFTPTXSTKMIPGY-EEEYDYFIKENNFDDIYCITNNDI 91
Query: 79 FVMEAWCRKNNAEGKIRFLADPNLEFTKKLG-VEHEIPVLGGWRSKRYSMVVDDGKITQL 137
+V+++W + + + KI++++D N FT + + + G R R+ +V++ + ++
Sbjct: 92 YVLKSWFKSMDIK-KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVENNILVKM 150
Query: 138 NIEPD 142
E D
Sbjct: 151 FQEKD 155
>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|B Chain B, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|C Chain C, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|D Chain D, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|E Chain E, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|F Chain F, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|G Chain G, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|H Chain H, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|I Chain I, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|J Chain J, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
Length = 187
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88
+KGK I+ P F+ C T L + +LK G+ E++ ++ + FV +AW +
Sbjct: 29 LKGKWSIVVFYPADFSFVCP-TELEDVQKEYAELKKLGV-EVYSVSTDTHFVHKAWHENS 86
Query: 89 NAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
A G I + + DP+ +++ V +E L + R + ++D DG I + I DG G
Sbjct: 87 PAVGSIEYIMIGDPSQTISRQFDVLNEETGL----ADRGTFIIDPDGVIQAIEINADGIG 142
Query: 146 LTCS-LVDELK 155
S L++++K
Sbjct: 143 RDASTLINKVK 153
>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Sulfolobus Tokodaii
pdb|4G2E|A Chain A, Crystal Structure Of A Dimeric Prxq From Sulfolobus
Tokodaii
Length = 157
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCS--VTHLPGYLAKEKD 61
++G+ PD L +T K++++ A+KGK V++ P AFT C+ + +AK
Sbjct: 5 EIGELAPDFEL-PDTELKKVKLS-ALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ 62
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGW- 120
+ A + I+V+ F +A+ N I L+D N E KK V E P L G+
Sbjct: 63 VNA----VVLGISVDPPFSNKAFKEHNKLNFTI--LSDYNREVVKKYNVAWEFPALPGYV 116
Query: 121 RSKRYSMVVD-DGKITQLNIEPDGT 144
+KR V+D +GK+ + D T
Sbjct: 117 LAKRAVFVIDKEGKVRYKWVSDDPT 141
>pdb|3HJP|A Chain A, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|B Chain B, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|C Chain C, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
pdb|3HJP|D Chain D, The Crystal Structure Of Bcp4 From Sulfolobus Solfataricus
Length = 164
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGY---LAK 58
++G+ P+ L + T K++I KGK V++ P AFT S + + +AK
Sbjct: 1 MVEIGEKAPEIELVD-TDLKKVKIPSDFKGKVVVLAFYPAAFT-SVSTKEMSTFRDSMAK 58
Query: 59 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPV 116
++ A + I+V+ F +A+ +N KI F ++D N E K GV E+P+
Sbjct: 59 FNEVNAV----VIGISVDPPFSNKAFKEQN----KINFTIVSDFNREAVKAYGVAGELPI 110
Query: 117 LGGW-RSKRYSMVVDDGKITQ 136
L G+ +KR V+D I +
Sbjct: 111 LKGYVLAKRSVFVIDKNGIVR 131
>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|B Chain B, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|C Chain C, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|D Chain D, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|E Chain E, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|F Chain F, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|G Chain G, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|H Chain H, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|I Chain I, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
pdb|3A5W|J Chain J, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1
(Reduced Form)
Length = 249
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64
+G+ P+ + + K+ +GK ++F P FTP C+ T + + +D +
Sbjct: 7 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQR 65
Query: 65 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR----FLADPNLEFTKKLGVEH 112
G+ ++ ++V+ F W +R +ADP ++LG+ H
Sbjct: 66 LGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH 116
>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|B Chain B, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|C Chain C, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|D Chain D, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|E Chain E, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|F Chain F, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|G Chain G, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|H Chain H, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|I Chain I, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
pdb|2E2G|J Chain J, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin
Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form)
Length = 250
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64
+G+ P+ + + K+ +GK ++F P FTP C+ T + + +D +
Sbjct: 8 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQR 66
Query: 65 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR----FLADPNLEFTKKLGVEH 112
G+ ++ ++V+ F W +R +ADP ++LG+ H
Sbjct: 67 LGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH 117
>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|B Chain B, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|C Chain C, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|D Chain D, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|E Chain E, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|F Chain F, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|G Chain G, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|H Chain H, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|I Chain I, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
pdb|3A2V|J Chain J, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed
With Hydrogen Peroxide
Length = 249
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64
+G+ P+ + + K+ +GK ++F P FTP C+ T + + +D +
Sbjct: 7 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQR 65
Query: 65 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR----FLADPNLEFTKKLGVEH 112
G+ ++ ++V+ F W +R +ADP ++LG+ H
Sbjct: 66 LGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH 116
>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|B Chain B, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|C Chain C, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|D Chain D, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|E Chain E, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|F Chain F, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|G Chain G, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|H Chain H, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|I Chain I, Thioredoxin Peroxidase From Aeropyrum Pernix K1
pdb|1X0R|J Chain J, Thioredoxin Peroxidase From Aeropyrum Pernix K1
Length = 249
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64
+G+ P+ + + K+ +GK ++F P FTP C+ T + + +D +
Sbjct: 7 IGERFPEXEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQR 65
Query: 65 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR----FLADPNLEFTKKLGVEH 112
G+ ++ ++V+ F W +R +ADP ++LG+ H
Sbjct: 66 LGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLH 116
>pdb|2CX3|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX3|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-1 Crystal)
pdb|2CX4|A Chain A, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|B Chain B, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|C Chain C, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|D Chain D, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|E Chain E, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|F Chain F, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|G Chain G, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|2CX4|H Chain H, Crystal Structure Of A Bacterioferritin Comigratory
Protein Peroxiredoxin From The Aeropyrum Pernix K1
(Form-2 Crystal)
pdb|4GQF|A Chain A, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
pdb|4GQF|B Chain B, Aeropyrum Pernix Peroxiredoxin Q Enzyme In The Locally
Unfolded Conformation
Length = 164
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIK-GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62
++G+ PD L N + + + +K G+ ++ P AF+P C+ L + K L
Sbjct: 6 ELGEKAPDFTL-PNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCT-KELCTFRDKXAQL 63
Query: 63 KAKGIHEIFCIAVNDAFVMEAWC-RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
+ K E+ I+V+ WC +K E ++ F L+D N E K V HE
Sbjct: 64 E-KANAEVLAISVD-----SPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE 111
>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|F Chain F, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|G Chain G, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|H Chain H, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|I Chain I, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|J Chain J, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 89
+G+ + F P FT C T L ++L+ G+ +++ ++ + FV +AW +
Sbjct: 29 EGRWSVFFFYPADFTFVCP-TELGDVADHYEELQKLGV-DVYSVSTDTHFVHKAWHSSSE 86
Query: 90 AEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGL 146
KI++ + DP T+ E L + R + VVD G I + + +G G
Sbjct: 87 TIAKIKYAMIGDPTGALTRNFDNMREDEGL----ADRATFVVDPQGIIQAIEVTAEGIGR 142
Query: 147 TCS 149
S
Sbjct: 143 DAS 145
>pdb|4GQC|A Chain A, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|B Chain B, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|C Chain C, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
pdb|4GQC|D Chain D, Crystal Structure Of Aeropyrum Pernix Peroxiredoxin Q
Enzyme In Fully- Folded And Locally-unfolded
Conformations
Length = 164
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIK-GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62
++G+ PD L N + + + +K G+ ++ P AF+P C+ L + K L
Sbjct: 6 ELGEKAPDFTL-PNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCT-KELCTFRDKMAQL 63
Query: 63 KAKGIHEIFCIAVNDAFVMEAWC-RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
+ K E+ I+V+ WC +K E ++ F L+D N E K V HE
Sbjct: 64 E-KANAEVLAISVD-----SPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHE 111
>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|E Chain E, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|F Chain F, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|G Chain G, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|H Chain H, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|I Chain I, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
pdb|3SBC|J Chain J, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s
Mutant Protein
Length = 216
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 27 DAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 86
D KGK V++ +P AFT S T + + K + +G +F + + + + AW
Sbjct: 48 DKYKGKYVVLAFIPLAFT-FVSPTEIIAFSEAAKKFEEQGAQVLFA-STDSEYSLLAWTN 105
Query: 87 KNNAEG-----KIRFLADPNLEFTKKLGV 110
EG I LAD N ++ GV
Sbjct: 106 IPRKEGGLGPINIPLLADTNHSLSRDYGV 134
>pdb|1XEZ|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Pro-Toxin With Octylglucoside Bound
Length = 721
Score = 32.7 bits (73), Expect = 0.091, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 68 HEIFCIAVNDAFVME------AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 121
H F I+VN A E +W KN +G F D N+ ++ +E R
Sbjct: 146 HVAFYISVNRAISDEECTFNNSWLWKNE-KGSRPFCKDANISLIYRVNLE---------R 195
Query: 122 SKRYSMV---VDDGKITQLNIEPDGTGLTCSLVDEL 154
S +Y +V D KI +++++ D TG L D+L
Sbjct: 196 SLQYGIVGSATPDAKIVRISLDDDSTGAGIHLNDQL 231
>pdb|3O44|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|B Chain B, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|C Chain C, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|D Chain D, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|E Chain E, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|F Chain F, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|G Chain G, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|H Chain H, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|I Chain I, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|J Chain J, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|K Chain K, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|L Chain L, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|M Chain M, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|N Chain N, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
Length = 593
Score = 32.7 bits (73), Expect = 0.091, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 68 HEIFCIAVNDAFVME------AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 121
H F I+VN A E +W KN +G F D N+ ++ +E R
Sbjct: 18 HVAFYISVNRAISDEECTFNNSWLWKNE-KGSRPFCKDANISLIYRVNLE---------R 67
Query: 122 SKRYSMV---VDDGKITQLNIEPDGTGLTCSLVDEL 154
S +Y +V D KI +++++ D TG L D+L
Sbjct: 68 SLQYGIVGSATPDAKIVRISLDDDSTGAGIHLNDQL 103
>pdb|1XXG|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin G
Length = 233
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 24 QIADAIKGKKVIIFGVPGAFT 44
++A+ KGKKV IFGVP +T
Sbjct: 70 ELANNYKGKKVDIFGVPYFYT 90
>pdb|3OWE|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|F Chain F, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|H Chain H, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|J Chain J, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|L Chain L, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|N Chain N, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
pdb|3OWE|P Chain P, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A High Affinity Mutant Mouse T-Cell
Receptor Chain
Length = 234
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 24 QIADAIKGKKVIIFGVPGAFT 44
++A+ KGKKV IFGVP +T
Sbjct: 71 ELANNYKGKKVDIFGVPYFYT 91
>pdb|3MC0|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A Mouse T-Cell Receptor Beta Chain
pdb|3MC0|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin G (Seg)
In Complex With A Mouse T-Cell Receptor Beta Chain
Length = 239
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 24 QIADAIKGKKVIIFGVPGAFT 44
++A+ KGKKV IFGVP +T
Sbjct: 70 ELANNYKGKKVDIFGVPYFYT 90
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 30 KGKKVIIFGVPGA-FTPG--CSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 86
+G +VII G GA PG S+THLP K G+ +F I V A
Sbjct: 67 RGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVA 126
Query: 87 KNNAE 91
NNA+
Sbjct: 127 INNAK 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,113,993
Number of Sequences: 62578
Number of extensions: 207517
Number of successful extensions: 443
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 40
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)