Query psy5399
Match_columns 156
No_of_seqs 106 out of 1201
Neff 9.0
Searched_HMMs 46136
Date Sat Aug 17 01:34:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 2.6E-37 5.7E-42 215.4 13.8 133 1-139 2-137 (157)
2 cd03013 PRX5_like Peroxiredoxi 100.0 1.2E-33 2.7E-38 199.4 16.2 149 5-156 1-155 (155)
3 PRK10382 alkyl hydroperoxide r 100.0 9.4E-32 2E-36 194.7 14.0 145 2-155 1-152 (187)
4 PRK13190 putative peroxiredoxi 100.0 1.7E-31 3.7E-36 195.9 15.1 145 2-155 1-150 (202)
5 PRK13599 putative peroxiredoxi 100.0 1.7E-31 3.8E-36 197.2 14.9 144 3-155 2-152 (215)
6 PTZ00137 2-Cys peroxiredoxin; 100.0 1.9E-31 4.1E-36 201.1 14.8 146 1-155 66-221 (261)
7 PRK13191 putative peroxiredoxi 100.0 2.6E-31 5.7E-36 196.4 14.8 145 2-155 6-157 (215)
8 TIGR03137 AhpC peroxiredoxin. 100.0 2.8E-31 6E-36 192.7 14.2 142 4-155 3-152 (187)
9 PRK13189 peroxiredoxin; Provis 100.0 4.3E-31 9.3E-36 196.1 14.7 145 2-155 8-159 (222)
10 cd03018 PRX_AhpE_like Peroxire 100.0 1.2E-30 2.7E-35 182.2 14.0 143 3-155 1-147 (149)
11 PRK15000 peroxidase; Provision 100.0 1.5E-30 3.3E-35 190.4 14.3 146 3-155 2-158 (200)
12 COG0450 AhpC Peroxiredoxin [Po 100.0 2E-30 4.3E-35 184.7 14.2 147 1-155 1-157 (194)
13 cd03016 PRX_1cys Peroxiredoxin 100.0 2.1E-30 4.6E-35 190.2 14.3 142 5-155 1-150 (203)
14 cd03015 PRX_Typ2cys Peroxiredo 100.0 7.4E-30 1.6E-34 183.0 14.2 141 5-155 1-153 (173)
15 PF08534 Redoxin: Redoxin; In 100.0 3.4E-30 7.3E-35 179.6 11.7 144 4-155 1-146 (146)
16 cd03014 PRX_Atyp2cys Peroxired 100.0 6.4E-29 1.4E-33 172.7 14.7 139 4-155 1-141 (143)
17 PF00578 AhpC-TSA: AhpC/TSA fa 100.0 1.5E-29 3.3E-34 171.3 11.2 123 5-137 1-124 (124)
18 PRK00522 tpx lipid hydroperoxi 100.0 8.9E-29 1.9E-33 176.6 15.1 132 2-142 17-151 (167)
19 PRK09437 bcp thioredoxin-depen 100.0 7.6E-29 1.6E-33 174.5 14.0 135 3-143 4-141 (154)
20 PTZ00253 tryparedoxin peroxida 100.0 5.4E-29 1.2E-33 182.3 13.7 144 3-155 6-160 (199)
21 cd02971 PRX_family Peroxiredox 100.0 1.6E-28 3.4E-33 169.7 14.8 137 8-154 1-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 100.0 2.3E-28 5E-33 169.0 14.2 133 7-147 1-134 (140)
23 cd02970 PRX_like2 Peroxiredoxi 100.0 8.2E-28 1.8E-32 167.5 12.4 128 8-140 1-148 (149)
24 COG0678 AHP1 Peroxiredoxin [Po 99.9 2.3E-25 5.1E-30 151.9 15.8 156 1-156 1-163 (165)
25 PTZ00256 glutathione peroxidas 99.9 8.6E-26 1.9E-30 163.4 11.0 145 5-155 16-181 (183)
26 PTZ00056 glutathione peroxidas 99.9 1.2E-25 2.6E-30 164.6 10.9 142 4-155 14-178 (199)
27 PLN02412 probable glutathione 99.9 4E-25 8.7E-30 157.7 11.3 145 4-155 4-164 (167)
28 cd00340 GSH_Peroxidase Glutath 99.9 4.1E-25 8.9E-30 155.3 9.5 126 9-142 2-143 (152)
29 TIGR02540 gpx7 putative glutat 99.9 6.9E-25 1.5E-29 154.3 10.4 133 11-153 4-151 (153)
30 KOG0541|consensus 99.9 6.6E-24 1.4E-28 145.6 14.5 155 2-156 8-169 (171)
31 PLN02399 phospholipid hydroper 99.9 1E-24 2.2E-29 162.7 11.0 145 4-155 74-234 (236)
32 cd03012 TlpA_like_DipZ_like Tl 99.9 9.4E-25 2E-29 148.9 9.9 107 19-141 12-125 (126)
33 cd02969 PRX_like1 Peroxiredoxi 99.9 2.1E-24 4.6E-29 154.3 12.1 121 6-142 1-130 (171)
34 PRK15412 thiol:disulfide inter 99.9 8.1E-25 1.8E-29 158.5 9.1 132 3-154 39-175 (185)
35 PRK03147 thiol-disulfide oxido 99.9 1.5E-23 3.2E-28 149.8 11.8 124 3-143 35-160 (173)
36 KOG0855|consensus 99.9 2E-23 4.3E-28 144.9 11.7 128 2-137 62-189 (211)
37 TIGR02661 MauD methylamine deh 99.9 2.1E-23 4.7E-28 151.6 11.7 115 3-137 46-162 (189)
38 TIGR00385 dsbE periplasmic pro 99.9 1.8E-23 3.8E-28 150.0 9.9 121 3-143 34-159 (173)
39 cd02968 SCO SCO (an acronym fo 99.9 6.6E-23 1.4E-27 141.9 12.2 124 8-138 1-140 (142)
40 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.6E-22 3.5E-27 137.8 10.4 116 7-142 1-121 (127)
41 KOG0852|consensus 99.9 4.8E-22 1.1E-26 138.9 12.2 148 1-155 2-157 (196)
42 cd02967 mauD Methylamine utili 99.9 4.1E-22 9E-27 133.1 10.8 110 10-138 1-112 (114)
43 COG2077 Tpx Peroxiredoxin [Pos 99.9 6.2E-22 1.3E-26 135.4 10.7 132 3-142 18-151 (158)
44 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 5.7E-20 1.2E-24 124.3 12.4 109 10-141 1-112 (123)
45 cd03008 TryX_like_RdCVF Trypar 99.8 6.1E-21 1.3E-25 132.8 7.7 104 19-138 14-129 (146)
46 PRK14018 trifunctional thiored 99.8 1.5E-20 3.3E-25 153.4 10.8 123 3-143 32-161 (521)
47 cd02966 TlpA_like_family TlpA- 99.8 5.5E-20 1.2E-24 121.4 10.8 112 11-139 1-115 (116)
48 KOG0854|consensus 99.8 5.4E-20 1.2E-24 128.9 11.0 148 3-154 6-163 (224)
49 PLN02919 haloacid dehalogenase 99.8 9.5E-20 2.1E-24 160.1 10.2 125 3-143 391-524 (1057)
50 TIGR01626 ytfJ_HI0045 conserve 99.8 1.1E-18 2.4E-23 125.5 12.3 122 3-143 23-168 (184)
51 cd02964 TryX_like_family Trypa 99.8 8.9E-19 1.9E-23 120.3 9.4 102 21-139 8-117 (132)
52 PRK10606 btuE putative glutath 99.8 1.4E-18 3.1E-23 125.3 10.9 86 7-100 3-97 (183)
53 cd03009 TryX_like_TryX_NRX Try 99.8 3.2E-19 6.8E-24 122.2 6.9 108 17-139 5-117 (131)
54 PRK13728 conjugal transfer pro 99.8 3E-18 6.5E-23 122.8 7.7 106 5-143 51-159 (181)
55 PF13905 Thioredoxin_8: Thiore 99.6 1.1E-15 2.5E-20 98.8 6.2 89 31-134 1-95 (95)
56 TIGR02738 TrbB type-F conjugat 99.5 1.7E-14 3.8E-19 101.4 6.5 93 19-143 43-141 (153)
57 PF02630 SCO1-SenC: SCO1/SenC; 99.5 3.2E-13 7E-18 96.9 9.5 128 6-140 29-173 (174)
58 PF05988 DUF899: Bacterial pro 99.3 1.1E-10 2.4E-15 84.9 13.1 120 12-140 49-174 (211)
59 KOG2501|consensus 99.3 8.3E-11 1.8E-15 82.0 11.0 111 12-138 15-132 (157)
60 cd02950 TxlA TRX-like protein 99.2 1E-11 2.3E-16 86.3 5.0 92 17-143 5-98 (142)
61 TIGR02740 TraF-like TraF-like 99.2 1E-11 2.3E-16 94.9 5.1 95 19-142 155-251 (271)
62 PF00837 T4_deiodinase: Iodoth 99.2 4E-11 8.6E-16 88.8 7.3 133 3-155 73-233 (237)
63 cd02985 TRX_CDSP32 TRX family, 99.2 9.3E-11 2E-15 77.1 7.4 80 29-143 13-92 (103)
64 COG1999 Uncharacterized protei 99.2 2.6E-10 5.6E-15 84.0 9.9 139 8-152 45-201 (207)
65 COG0386 BtuE Glutathione perox 99.1 9.3E-10 2E-14 76.1 9.6 138 9-155 5-160 (162)
66 cd02999 PDI_a_ERp44_like PDIa 99.1 3.8E-10 8.2E-15 73.9 7.1 74 29-140 16-89 (100)
67 cd02963 TRX_DnaJ TRX domain, D 99.1 3.5E-10 7.5E-15 75.4 7.0 77 30-142 23-99 (111)
68 PRK09381 trxA thioredoxin; Pro 99.0 1.2E-09 2.6E-14 72.2 5.5 77 30-143 20-96 (109)
69 cd02951 SoxW SoxW family; SoxW 99.0 3.9E-10 8.4E-15 76.4 2.7 90 30-143 12-107 (125)
70 cd02948 TRX_NDPK TRX domain, T 98.9 6E-09 1.3E-13 68.3 6.8 75 30-141 16-90 (102)
71 cd02956 ybbN ybbN protein fami 98.9 2.8E-09 6.1E-14 68.7 5.0 75 30-141 11-85 (96)
72 KOG1651|consensus 98.9 3.5E-08 7.6E-13 69.1 9.8 140 8-155 13-169 (171)
73 cd02954 DIM1 Dim1 family; Dim1 98.8 1.4E-08 3E-13 67.8 6.7 76 31-143 14-89 (114)
74 PF13911 AhpC-TSA_2: AhpC/TSA 98.8 7.2E-08 1.6E-12 64.4 9.8 84 55-141 2-114 (115)
75 PF00255 GSHPx: Glutathione pe 98.8 2.5E-08 5.4E-13 66.0 6.5 80 11-98 3-91 (108)
76 cd02994 PDI_a_TMX PDIa family, 98.8 1.7E-08 3.7E-13 65.7 5.4 71 27-134 13-83 (101)
77 PF13098 Thioredoxin_2: Thiore 98.8 5.6E-10 1.2E-14 74.0 -1.8 94 30-140 4-101 (112)
78 COG4312 Uncharacterized protei 98.7 1.1E-07 2.5E-12 69.3 9.6 92 18-113 59-156 (247)
79 cd03005 PDI_a_ERp46 PDIa famil 98.7 4.4E-08 9.5E-13 63.5 6.3 75 31-141 16-92 (102)
80 cd03000 PDI_a_TMX3 PDIa family 98.7 4.2E-08 9.1E-13 64.3 5.9 36 30-67 14-49 (104)
81 PTZ00051 thioredoxin; Provisio 98.7 8.1E-08 1.8E-12 62.0 7.1 74 31-142 18-91 (98)
82 cd02949 TRX_NTR TRX domain, no 98.7 9E-08 2E-12 62.0 7.2 74 31-141 13-86 (97)
83 TIGR01295 PedC_BrcD bacterioci 98.7 1.4E-07 3E-12 63.9 8.3 90 31-155 23-120 (122)
84 cd02962 TMX2 TMX2 family; comp 98.7 6.6E-08 1.4E-12 67.9 6.7 80 31-140 47-126 (152)
85 KOG0910|consensus 98.7 6.9E-08 1.5E-12 66.9 6.3 89 30-155 60-148 (150)
86 PHA02278 thioredoxin-like prot 98.7 1.3E-07 2.8E-12 62.2 7.4 80 30-142 13-92 (103)
87 cd02997 PDI_a_PDIR PDIa family 98.7 1.2E-07 2.6E-12 61.6 7.1 77 30-140 16-93 (104)
88 KOG2792|consensus 98.7 7.4E-08 1.6E-12 71.9 6.6 123 10-138 120-258 (280)
89 KOG0907|consensus 98.7 1.9E-07 4.2E-12 61.7 7.9 75 31-143 21-95 (106)
90 PRK10996 thioredoxin 2; Provis 98.6 5.3E-08 1.1E-12 67.4 5.0 76 30-142 51-126 (139)
91 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 7E-08 1.5E-12 62.8 5.0 43 30-76 17-59 (101)
92 cd03002 PDI_a_MPD1_like PDI fa 98.6 1.1E-07 2.5E-12 62.4 5.6 68 30-132 17-84 (109)
93 cd02984 TRX_PICOT TRX domain, 98.6 2.1E-07 4.6E-12 59.8 6.6 74 31-141 14-87 (97)
94 cd02952 TRP14_like Human TRX-r 98.6 1.5E-07 3.2E-12 63.5 5.9 62 30-111 20-88 (119)
95 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 4.1E-07 9E-12 59.4 6.3 73 31-140 19-92 (104)
96 TIGR01068 thioredoxin thioredo 98.5 3.2E-07 7E-12 59.0 5.8 74 31-141 14-87 (101)
97 TIGR01126 pdi_dom protein disu 98.5 2.5E-07 5.5E-12 59.7 4.9 76 30-140 12-87 (102)
98 cd02986 DLP Dim1 family, Dim1- 98.5 6E-07 1.3E-11 59.8 6.6 43 30-76 13-55 (114)
99 cd02996 PDI_a_ERp44 PDIa famil 98.5 6.9E-07 1.5E-11 58.8 6.6 73 31-135 18-91 (108)
100 cd02989 Phd_like_TxnDC9 Phosdu 98.4 9.3E-07 2E-11 59.0 7.0 74 30-141 21-94 (113)
101 cd02947 TRX_family TRX family; 98.4 2.3E-06 5E-11 53.5 8.2 74 31-142 10-83 (93)
102 cd02953 DsbDgamma DsbD gamma f 98.4 5.9E-07 1.3E-11 58.7 5.4 78 30-140 10-92 (104)
103 cd03065 PDI_b_Calsequestrin_N 98.4 1.6E-06 3.4E-11 58.6 7.4 77 30-142 25-106 (120)
104 cd02957 Phd_like Phosducin (Ph 98.4 1.5E-06 3.3E-11 57.8 6.6 72 31-141 24-95 (113)
105 cd02993 PDI_a_APS_reductase PD 98.4 5.3E-07 1.1E-11 59.6 4.2 44 30-76 20-63 (109)
106 cd02965 HyaE HyaE family; HyaE 98.4 1.5E-06 3.2E-11 57.8 6.2 76 30-142 26-103 (111)
107 cd02959 ERp19 Endoplasmic reti 98.4 4.6E-07 9.9E-12 60.9 3.7 44 29-76 17-60 (117)
108 cd03006 PDI_a_EFP1_N PDIa fami 98.3 1.9E-06 4.1E-11 57.6 6.3 43 30-76 28-70 (113)
109 TIGR02739 TraF type-F conjugat 98.3 1.5E-06 3.2E-11 65.9 6.4 92 23-143 143-236 (256)
110 COG3118 Thioredoxin domain-con 98.3 5.7E-07 1.2E-11 68.7 4.1 78 30-144 42-119 (304)
111 PRK13703 conjugal pilus assemb 98.3 2.1E-06 4.5E-11 64.8 6.5 91 24-143 137-229 (248)
112 PF13728 TraF: F plasmid trans 98.3 3E-06 6.5E-11 62.8 7.2 89 24-141 114-204 (215)
113 PF00085 Thioredoxin: Thioredo 98.2 1.6E-06 3.5E-11 55.9 4.0 74 31-141 17-90 (103)
114 PLN00410 U5 snRNP protein, DIM 98.2 3.5E-06 7.5E-11 58.4 5.5 32 30-63 22-53 (142)
115 PTZ00443 Thioredoxin domain-co 98.2 2.5E-06 5.5E-11 63.5 5.1 71 31-138 52-122 (224)
116 cd02987 Phd_like_Phd Phosducin 98.2 2.9E-06 6.3E-11 61.0 5.2 85 32-155 84-171 (175)
117 cd02955 SSP411 TRX domain, SSP 98.2 7.3E-06 1.6E-10 55.7 6.3 20 29-49 13-32 (124)
118 cd02975 PfPDO_like_N Pyrococcu 98.1 8.1E-06 1.8E-10 54.4 5.8 40 32-76 23-62 (113)
119 cd02992 PDI_a_QSOX PDIa family 98.1 1.1E-05 2.3E-10 53.9 5.3 32 31-64 19-50 (114)
120 cd02988 Phd_like_VIAF Phosduci 98.0 1.4E-05 3.1E-10 58.2 5.9 84 31-155 102-188 (192)
121 cd02998 PDI_a_ERp38 PDIa famil 98.0 1.1E-05 2.4E-10 52.2 4.4 73 31-138 18-92 (105)
122 PRK00293 dipZ thiol:disulfide 98.0 4.4E-06 9.5E-11 70.2 2.6 73 30-136 473-549 (571)
123 TIGR01130 ER_PDI_fam protein d 97.9 2.1E-05 4.6E-10 63.8 6.3 35 30-66 17-51 (462)
124 KOG4498|consensus 97.9 5.5E-05 1.2E-09 54.2 7.5 123 17-143 36-181 (197)
125 cd02961 PDI_a_family Protein D 97.9 2.9E-05 6.4E-10 49.3 5.5 42 30-74 14-56 (101)
126 TIGR02187 GlrX_arch Glutaredox 97.9 4.4E-05 9.5E-10 56.5 6.9 77 29-140 17-96 (215)
127 PTZ00102 disulphide isomerase; 97.9 3.2E-05 7E-10 63.3 6.5 37 30-68 48-84 (477)
128 TIGR00424 APS_reduc 5'-adenyly 97.8 1.9E-05 4.2E-10 64.5 4.3 44 30-76 370-413 (463)
129 PTZ00102 disulphide isomerase; 97.8 2.3E-05 5E-10 64.1 4.7 46 18-65 362-407 (477)
130 cd03001 PDI_a_P5 PDIa family, 97.8 3.2E-05 7E-10 50.0 4.5 69 31-136 18-86 (103)
131 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 4.1E-05 8.8E-10 49.4 4.7 32 31-64 18-49 (104)
132 PTZ00062 glutaredoxin; Provisi 97.7 9.2E-05 2E-09 54.5 5.3 38 34-75 19-56 (204)
133 PLN02309 5'-adenylylsulfate re 97.7 6E-05 1.3E-09 61.7 4.7 44 30-76 364-407 (457)
134 COG0526 TrxA Thiol-disulfide i 97.7 0.00021 4.6E-09 45.8 6.5 50 22-76 24-73 (127)
135 PF05176 ATP-synt_10: ATP10 pr 97.5 9.4E-05 2E-09 56.1 3.5 121 7-142 99-237 (252)
136 PF04592 SelP_N: Selenoprotein 97.4 0.0011 2.3E-08 49.4 8.1 113 8-141 9-129 (238)
137 PF13899 Thioredoxin_7: Thiore 97.4 0.00043 9.2E-09 43.3 5.1 66 29-100 15-82 (82)
138 cd02958 UAS UAS family; UAS is 97.3 0.00039 8.4E-09 46.2 3.9 20 29-49 15-34 (114)
139 TIGR00411 redox_disulf_1 small 97.3 0.00053 1.1E-08 42.3 4.1 38 36-76 3-40 (82)
140 cd01659 TRX_superfamily Thiore 97.2 0.0013 2.8E-08 37.2 5.3 44 36-84 2-45 (69)
141 cd02982 PDI_b'_family Protein 97.1 0.00086 1.9E-08 43.2 4.3 31 31-63 12-42 (103)
142 TIGR00412 redox_disulf_2 small 97.1 0.00091 2E-08 41.3 4.2 36 36-77 3-38 (76)
143 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.0033 7.3E-08 42.1 7.0 31 32-66 19-49 (116)
144 KOG0190|consensus 97.0 0.0012 2.6E-08 54.4 5.1 66 26-95 36-101 (493)
145 PF09695 YtfJ_HI0045: Bacteria 97.0 0.0076 1.6E-07 42.4 8.2 122 3-142 1-145 (160)
146 cd02973 TRX_GRX_like Thioredox 97.0 0.0011 2.3E-08 39.6 3.4 35 38-76 5-39 (67)
147 cd03026 AhpF_NTD_C TRX-GRX-lik 96.9 0.0018 4E-08 41.3 4.3 31 31-62 11-41 (89)
148 cd02960 AGR Anterior Gradient 96.8 0.00066 1.4E-08 46.4 1.8 20 29-49 21-40 (130)
149 TIGR02196 GlrX_YruB Glutaredox 96.7 0.0096 2.1E-07 35.4 6.2 53 37-99 3-56 (74)
150 TIGR01130 ER_PDI_fam protein d 96.5 0.0027 5.9E-08 51.5 3.4 43 30-75 363-407 (462)
151 PF14595 Thioredoxin_9: Thiore 96.3 0.00032 6.9E-09 47.9 -2.3 39 33-76 43-81 (129)
152 KOG0190|consensus 96.2 0.0047 1E-07 50.9 3.4 43 30-76 383-425 (493)
153 TIGR02187 GlrX_arch Glutaredox 96.2 0.012 2.5E-07 43.5 5.2 28 31-59 132-159 (215)
154 PHA02125 thioredoxin-like prot 96.0 0.011 2.4E-07 36.2 3.7 20 35-56 2-21 (75)
155 TIGR02200 GlrX_actino Glutared 96.0 0.021 4.6E-07 34.5 4.9 30 39-77 5-34 (77)
156 smart00594 UAS UAS domain. 95.9 0.013 2.9E-07 39.3 4.1 20 29-49 25-44 (122)
157 KOG0908|consensus 95.9 0.0094 2E-07 45.0 3.5 41 30-75 20-60 (288)
158 KOG0191|consensus 95.9 0.018 3.9E-07 46.3 5.4 61 30-98 46-106 (383)
159 TIGR02190 GlrX-dom Glutaredoxi 95.8 0.027 5.8E-07 34.8 4.7 58 32-101 8-65 (79)
160 cd02976 NrdH NrdH-redoxin (Nrd 95.5 0.04 8.7E-07 32.6 4.7 54 38-101 4-58 (73)
161 TIGR00365 monothiol glutaredox 95.5 0.054 1.2E-06 35.0 5.5 64 28-101 8-75 (97)
162 KOG3425|consensus 95.5 0.021 4.5E-07 38.3 3.6 50 25-77 19-75 (128)
163 PHA03050 glutaredoxin; Provisi 95.4 0.081 1.7E-06 34.9 6.1 20 27-48 8-27 (108)
164 PF07976 Phe_hydrox_dim: Pheno 95.3 0.016 3.4E-07 41.4 2.6 106 3-111 30-165 (169)
165 PRK11200 grxA glutaredoxin 1; 95.2 0.03 6.4E-07 35.0 3.4 35 38-76 5-39 (85)
166 PRK10329 glutaredoxin-like pro 95.1 0.068 1.5E-06 33.3 4.8 54 38-101 5-58 (81)
167 TIGR02180 GRX_euk Glutaredoxin 95.0 0.028 6.1E-07 34.6 2.9 54 39-98 4-59 (84)
168 cd02066 GRX_family Glutaredoxi 95.0 0.066 1.4E-06 31.4 4.5 53 39-101 5-58 (72)
169 PRK11657 dsbG disulfide isomer 94.8 0.049 1.1E-06 41.3 4.3 27 31-59 117-143 (251)
170 PRK10877 protein disulfide iso 94.8 0.053 1.1E-06 40.7 4.4 37 30-73 106-142 (232)
171 TIGR02194 GlrX_NrdH Glutaredox 94.7 0.069 1.5E-06 32.2 4.0 53 38-100 3-55 (72)
172 cd03418 GRX_GRXb_1_3_like Glut 94.7 0.13 2.8E-06 31.0 5.3 55 38-101 4-59 (75)
173 KOG1731|consensus 94.6 0.012 2.7E-07 49.0 0.8 61 33-97 59-120 (606)
174 PF06110 DUF953: Eukaryotic pr 94.3 0.022 4.9E-07 38.3 1.2 47 30-79 18-70 (119)
175 TIGR02181 GRX_bact Glutaredoxi 94.2 0.14 3E-06 31.3 4.7 54 38-101 3-57 (79)
176 TIGR02183 GRXA Glutaredoxin, G 94.2 0.062 1.3E-06 33.8 3.1 55 38-98 4-62 (86)
177 COG4232 Thiol:disulfide interc 94.2 0.092 2E-06 44.1 4.8 68 30-101 473-544 (569)
178 COG0695 GrxC Glutaredoxin and 94.1 0.08 1.7E-06 32.9 3.5 53 40-102 7-62 (80)
179 cd02979 PHOX_C FAD-dependent P 94.1 0.4 8.7E-06 34.1 7.4 120 6-139 1-153 (167)
180 TIGR02189 GlrX-like_plant Glut 93.9 0.088 1.9E-06 34.1 3.5 37 29-76 5-41 (99)
181 cd03027 GRX_DEP Glutaredoxin ( 93.8 0.29 6.3E-06 29.4 5.5 56 34-101 3-59 (73)
182 cd03020 DsbA_DsbC_DsbG DsbA fa 93.8 0.09 1.9E-06 38.2 3.7 25 31-57 77-101 (197)
183 PRK10638 glutaredoxin 3; Provi 93.6 0.22 4.7E-06 30.9 4.8 54 38-101 6-60 (83)
184 cd03029 GRX_hybridPRX5 Glutare 93.5 0.21 4.5E-06 29.9 4.5 49 40-98 7-55 (72)
185 cd03419 GRX_GRXh_1_2_like Glut 93.0 0.058 1.2E-06 33.0 1.4 56 38-101 4-61 (82)
186 PF13778 DUF4174: Domain of un 92.8 0.062 1.3E-06 36.1 1.4 105 25-152 3-109 (118)
187 PRK11509 hydrogenase-1 operon 92.7 0.32 6.8E-06 33.4 4.8 38 96-143 75-112 (132)
188 KOG0191|consensus 92.5 0.21 4.5E-06 40.1 4.4 53 33-91 164-217 (383)
189 PF03190 Thioredox_DsbH: Prote 92.5 0.19 4E-06 35.7 3.6 26 22-49 29-54 (163)
190 PF00462 Glutaredoxin: Glutare 92.4 0.12 2.6E-06 29.8 2.3 51 38-98 3-54 (60)
191 cd03028 GRX_PICOT_like Glutare 92.4 0.58 1.3E-05 29.5 5.6 62 28-99 4-69 (90)
192 PRK10824 glutaredoxin-4; Provi 92.4 0.5 1.1E-05 31.6 5.4 58 27-95 10-72 (115)
193 KOG0912|consensus 92.2 0.2 4.3E-06 39.1 3.6 60 32-95 14-74 (375)
194 cd03023 DsbA_Com1_like DsbA fa 91.7 0.1 2.2E-06 35.6 1.5 31 31-63 5-35 (154)
195 PF11009 DUF2847: Protein of u 91.2 0.31 6.7E-06 32.1 3.3 78 31-140 19-96 (105)
196 COG2143 Thioredoxin-related pr 91.0 0.97 2.1E-05 32.0 5.7 87 30-137 41-131 (182)
197 cd03032 ArsC_Spx Arsenate Redu 90.4 0.48 1E-05 31.4 3.8 64 38-112 4-71 (115)
198 PRK01655 spxA transcriptional 90.1 0.41 8.9E-06 32.6 3.3 65 37-112 3-71 (131)
199 cd02991 UAS_ETEA UAS family, E 89.8 0.64 1.4E-05 31.0 4.0 19 29-48 15-37 (116)
200 cd02977 ArsC_family Arsenate R 89.6 0.49 1.1E-05 30.7 3.2 63 38-111 3-69 (105)
201 TIGR01617 arsC_related transcr 89.1 0.72 1.6E-05 30.6 3.9 62 38-110 3-68 (117)
202 cd03036 ArsC_like Arsenate Red 88.8 0.54 1.2E-05 31.0 3.1 63 38-111 3-69 (111)
203 cd03019 DsbA_DsbA DsbA family, 88.2 0.65 1.4E-05 32.6 3.4 31 30-62 14-44 (178)
204 PRK12559 transcriptional regul 86.6 1.2 2.6E-05 30.4 3.8 64 38-112 4-71 (131)
205 KOG0914|consensus 86.4 1.6 3.4E-05 32.7 4.4 34 33-68 146-179 (265)
206 PRK06184 hypothetical protein; 86.1 6.7 0.00015 32.6 8.7 92 3-138 386-479 (502)
207 PF13462 Thioredoxin_4: Thiore 86.0 0.31 6.8E-06 33.6 0.7 50 21-74 3-53 (162)
208 PRK13344 spxA transcriptional 85.8 1.6 3.4E-05 29.9 4.0 64 38-112 4-71 (132)
209 COG2179 Predicted hydrolase of 85.7 3.6 7.9E-05 29.4 5.9 61 30-91 26-86 (175)
210 PRK08294 phenol 2-monooxygenas 85.6 2.2 4.7E-05 36.8 5.7 121 3-138 463-615 (634)
211 TIGR03765 ICE_PFL_4695 integra 85.1 5.9 0.00013 26.0 6.2 56 52-111 37-92 (105)
212 PTZ00062 glutaredoxin; Provisi 85.0 4.3 9.4E-05 29.9 6.3 66 25-97 106-172 (204)
213 KOG1752|consensus 84.1 4.2 9.1E-05 26.7 5.3 19 29-49 11-29 (104)
214 PF11072 DUF2859: Protein of u 82.7 9.1 0.0002 26.6 6.7 56 52-111 75-130 (142)
215 TIGR00412 redox_disulf_2 small 81.5 9.3 0.0002 23.0 6.2 44 79-136 18-61 (76)
216 PF02114 Phosducin: Phosducin; 81.3 2.9 6.3E-05 32.1 4.3 40 31-75 146-185 (265)
217 cd03060 GST_N_Omega_like GST_N 80.7 3.5 7.7E-05 24.3 3.8 52 39-101 4-56 (71)
218 KOG4277|consensus 80.3 2.2 4.7E-05 33.5 3.3 33 34-68 46-78 (468)
219 COG1180 PflA Pyruvate-formate 77.1 9.5 0.00021 29.1 6.0 31 21-52 25-57 (260)
220 PRK08132 FAD-dependent oxidore 76.9 16 0.00034 30.8 7.7 103 3-139 427-530 (547)
221 PRK12759 bifunctional gluaredo 76.9 5.3 0.00011 32.6 4.8 32 39-79 7-38 (410)
222 PRK10954 periplasmic protein d 75.8 1.7 3.6E-05 31.8 1.5 43 19-63 24-70 (207)
223 TIGR03759 conj_TIGR03759 integ 73.8 3.4 7.3E-05 30.3 2.6 68 33-110 110-184 (200)
224 TIGR03143 AhpF_homolog putativ 73.7 2.2 4.8E-05 36.1 1.9 28 31-59 475-502 (555)
225 cd03035 ArsC_Yffb Arsenate Red 71.7 9.5 0.00021 24.8 4.2 61 38-111 3-67 (105)
226 cd02972 DsbA_family DsbA famil 71.3 2.7 5.9E-05 25.6 1.5 29 38-68 3-31 (98)
227 TIGR00995 3a0901s06TIC22 chlor 71.3 28 0.0006 26.9 7.1 88 7-111 80-170 (270)
228 KOG0911|consensus 70.6 5.3 0.00011 29.9 3.0 43 30-77 16-58 (227)
229 PF05768 DUF836: Glutaredoxin- 70.2 1.6 3.5E-05 26.9 0.3 56 36-101 2-57 (81)
230 PRK05778 2-oxoglutarate ferred 70.1 8 0.00017 30.3 4.1 34 39-74 16-51 (301)
231 cd03041 GST_N_2GST_N GST_N fam 67.9 23 0.00051 21.1 5.6 52 39-100 5-57 (77)
232 PF06491 Disulph_isomer: Disul 66.7 33 0.00071 23.5 5.9 38 94-138 71-111 (136)
233 PRK06183 mhpA 3-(3-hydroxyphen 66.1 38 0.00083 28.4 7.7 103 4-137 412-515 (538)
234 PF06053 DUF929: Domain of unk 65.6 7.4 0.00016 29.6 3.0 30 31-62 58-87 (249)
235 PF08821 CGGC: CGGC domain; I 64.5 21 0.00047 23.4 4.7 47 21-75 26-73 (107)
236 PHA02762 hypothetical protein; 63.5 13 0.00028 21.2 3.0 18 126-143 31-49 (62)
237 COG0552 FtsY Signal recognitio 63.3 56 0.0012 26.1 7.5 93 30-136 136-235 (340)
238 cd03025 DsbA_FrnE_like DsbA fa 63.2 8.7 0.00019 27.2 2.9 26 36-62 3-28 (193)
239 PF13192 Thioredoxin_3: Thiore 62.9 9.3 0.0002 23.0 2.6 20 41-61 7-26 (76)
240 PRK15317 alkyl hydroperoxide r 61.6 13 0.00028 31.1 4.1 55 31-92 115-169 (517)
241 TIGR02177 PorB_KorB 2-oxoacid: 61.0 15 0.00033 28.5 4.1 24 42-67 2-25 (287)
242 COG1393 ArsC Arsenate reductas 60.9 11 0.00024 25.1 2.9 50 59-111 18-71 (117)
243 PRK05370 argininosuccinate syn 60.1 8.8 0.00019 31.7 2.7 71 24-108 4-81 (447)
244 cd01427 HAD_like Haloacid deha 59.8 28 0.00062 22.2 4.9 39 52-91 26-64 (139)
245 PRK04596 minC septum formation 59.1 53 0.0011 25.1 6.5 59 26-91 45-103 (248)
246 COG1331 Highly conserved prote 59.0 28 0.00061 30.3 5.6 22 29-51 41-62 (667)
247 PRK11869 2-oxoacid ferredoxin 57.8 12 0.00026 29.0 3.0 26 39-66 6-31 (280)
248 PF01106 NifU: NifU-like domai 57.7 19 0.00042 21.5 3.3 36 18-57 14-49 (68)
249 TIGR01662 HAD-SF-IIIA HAD-supe 56.3 55 0.0012 21.5 6.0 39 52-91 27-73 (132)
250 PF00875 DNA_photolyase: DNA p 55.9 26 0.00056 24.3 4.3 45 53-101 53-97 (165)
251 cd03059 GST_N_SspA GST_N famil 55.5 11 0.00024 21.9 2.0 53 39-101 4-56 (73)
252 PF04278 Tic22: Tic22-like fam 55.2 9.5 0.00021 29.4 2.1 88 8-108 74-167 (274)
253 PF10740 DUF2529: Protein of u 54.7 27 0.00058 25.1 4.1 33 33-74 83-115 (172)
254 cd05017 SIS_PGI_PMI_1 The memb 54.1 38 0.00083 22.1 4.7 36 53-91 57-92 (119)
255 TIGR01672 AphA HAD superfamily 53.7 29 0.00062 26.2 4.4 58 41-99 103-166 (237)
256 COG3529 Predicted nucleic-acid 53.7 15 0.00033 21.6 2.2 27 38-71 7-33 (66)
257 COG3769 Predicted hydrolase (H 52.9 35 0.00076 25.8 4.6 44 57-102 30-73 (274)
258 PF00702 Hydrolase: haloacid d 50.7 31 0.00067 24.4 4.1 57 52-110 129-193 (215)
259 KOG0913|consensus 50.6 2.5 5.4E-05 31.8 -1.6 39 27-68 36-74 (248)
260 COG1651 DsbG Protein-disulfide 50.0 14 0.00031 27.4 2.3 44 17-63 71-114 (244)
261 TIGR01485 SPP_plant-cyano sucr 49.5 40 0.00088 25.1 4.7 40 51-91 22-61 (249)
262 TIGR03830 CxxCG_CxxCG_HTH puta 49.1 53 0.0011 21.6 4.8 66 29-112 20-92 (127)
263 cd00570 GST_N_family Glutathio 48.5 11 0.00024 21.0 1.3 53 41-103 6-59 (71)
264 PF01323 DSBA: DSBA-like thior 48.0 7.3 0.00016 27.5 0.4 29 37-68 3-31 (193)
265 TIGR03140 AhpF alkyl hydropero 47.7 19 0.00042 30.1 2.9 55 31-92 116-170 (515)
266 PF13419 HAD_2: Haloacid dehal 47.4 36 0.00078 22.9 3.9 39 52-91 79-117 (176)
267 PRK08244 hypothetical protein; 46.7 28 0.0006 28.8 3.7 34 4-38 392-426 (493)
268 PRK11866 2-oxoacid ferredoxin 46.5 40 0.00086 26.1 4.3 24 40-65 6-29 (279)
269 PHA03398 viral phosphatase sup 45.8 70 0.0015 25.2 5.5 51 53-104 151-201 (303)
270 cd03034 ArsC_ArsC Arsenate Red 45.5 29 0.00062 22.7 3.0 60 41-111 6-69 (112)
271 PRK13222 phosphoglycolate phos 44.5 94 0.002 22.3 5.9 45 52-97 95-139 (226)
272 PF12710 HAD: haloacid dehalog 43.7 48 0.001 23.1 4.2 35 56-91 95-129 (192)
273 TIGR02491 NrdG anaerobic ribon 43.7 76 0.0017 21.9 5.1 53 23-77 8-73 (154)
274 COG4545 Glutaredoxin-related p 42.8 81 0.0018 19.5 6.3 40 41-89 9-49 (85)
275 COG1419 FlhF Flagellar GTP-bin 42.5 1.2E+02 0.0026 24.9 6.6 80 35-133 205-292 (407)
276 cd03051 GST_N_GTT2_like GST_N 42.2 23 0.00051 20.4 2.0 11 39-49 4-14 (74)
277 PF07905 PucR: Purine cataboli 41.4 1E+02 0.0022 20.3 7.4 62 25-92 36-102 (123)
278 TIGR01488 HAD-SF-IB Haloacid D 41.4 72 0.0016 21.9 4.7 38 53-91 76-113 (177)
279 PRK10026 arsenate reductase; P 41.1 42 0.00091 23.2 3.3 61 41-112 9-73 (141)
280 COG0278 Glutaredoxin-related p 41.0 1E+02 0.0022 20.2 6.0 62 28-96 11-74 (105)
281 PRK01018 50S ribosomal protein 40.9 96 0.0021 19.8 7.1 49 60-111 26-78 (99)
282 TIGR00014 arsC arsenate reduct 40.1 44 0.00095 21.9 3.2 63 38-111 3-70 (114)
283 PHA03075 glutaredoxin-like pro 39.8 12 0.00025 25.1 0.4 36 32-75 2-37 (123)
284 PF00448 SRP54: SRP54-type pro 39.7 70 0.0015 23.2 4.5 43 53-98 16-63 (196)
285 PRK09628 oorB 2-oxoglutarate-a 39.2 53 0.0012 25.4 4.0 26 38-65 13-38 (277)
286 cd03055 GST_N_Omega GST_N fami 39.1 47 0.001 20.4 3.1 13 34-48 19-31 (89)
287 COG0525 ValS Valyl-tRNA synthe 39.1 26 0.00056 31.6 2.5 42 94-137 252-303 (877)
288 TIGR01428 HAD_type_II 2-haloal 39.0 89 0.0019 22.1 5.0 43 52-95 94-136 (198)
289 COG3322 Predicted periplasmic 38.8 38 0.00081 26.5 3.1 28 126-153 107-135 (295)
290 PRK11867 2-oxoglutarate ferred 38.5 35 0.00076 26.5 2.9 23 42-66 18-40 (286)
291 TIGR01459 HAD-SF-IIA-hyp4 HAD- 38.4 1.6E+02 0.0034 21.8 6.4 49 52-101 26-77 (242)
292 COG0560 SerB Phosphoserine pho 38.4 75 0.0016 23.4 4.6 39 52-91 79-117 (212)
293 PF03193 DUF258: Protein of un 38.3 77 0.0017 22.4 4.4 43 56-101 2-44 (161)
294 TIGR01449 PGP_bact 2-phosphogl 38.3 1.1E+02 0.0023 21.8 5.4 43 52-95 87-129 (213)
295 smart00262 GEL Gelsolin homolo 38.1 36 0.00077 20.9 2.5 26 125-150 27-52 (90)
296 TIGR01490 HAD-SF-IB-hyp1 HAD-s 38.0 1E+02 0.0022 21.8 5.2 38 53-91 90-127 (202)
297 TIGR00338 serB phosphoserine p 37.6 83 0.0018 22.6 4.7 39 52-91 87-125 (219)
298 PF02541 Ppx-GppA: Ppx/GppA ph 37.1 77 0.0017 24.2 4.6 57 53-111 42-105 (285)
299 PF10673 DUF2487: Protein of u 36.6 97 0.0021 21.5 4.6 43 29-76 48-94 (142)
300 PF03544 TonB_C: Gram-negative 36.4 33 0.00073 20.2 2.1 16 126-141 21-37 (79)
301 PF11576 DUF3236: Protein of u 36.4 61 0.0013 22.6 3.4 29 117-145 102-131 (154)
302 PF01191 RNA_pol_Rpb5_C: RNA p 36.2 1E+02 0.0022 18.8 5.3 34 77-111 16-50 (74)
303 PRK13288 pyrophosphatase PpaX; 35.8 1.6E+02 0.0035 21.0 6.1 45 52-97 84-128 (214)
304 COG0546 Gph Predicted phosphat 35.5 1.3E+02 0.0028 21.9 5.5 46 51-97 90-135 (220)
305 PF07555 NAGidase: beta-N-acet 34.7 83 0.0018 24.7 4.5 60 42-101 45-115 (306)
306 PLN02954 phosphoserine phospha 34.7 98 0.0021 22.3 4.7 39 52-91 86-124 (224)
307 PF04800 ETC_C1_NDUFA4: ETC co 34.7 55 0.0012 21.3 2.9 29 71-101 51-79 (101)
308 TIGR01684 viral_ppase viral ph 34.6 1.6E+02 0.0034 23.2 5.9 46 53-99 149-194 (301)
309 TIGR02765 crypto_DASH cryptoch 34.4 2E+02 0.0043 23.4 6.8 38 53-91 61-98 (429)
310 cd03061 GST_N_CLIC GST_N famil 34.2 43 0.00093 21.2 2.4 38 64-104 34-72 (91)
311 cd03033 ArsC_15kD Arsenate Red 33.9 1.1E+02 0.0024 20.1 4.4 44 38-90 4-51 (113)
312 TIGR01491 HAD-SF-IB-PSPlk HAD- 33.7 1.2E+02 0.0025 21.3 4.9 38 53-91 83-120 (201)
313 PRK13225 phosphoglycolate phos 33.6 1.7E+02 0.0038 22.3 6.0 45 52-97 144-188 (273)
314 KOG3277|consensus 33.5 41 0.00089 23.7 2.3 14 44-57 82-95 (165)
315 PF13344 Hydrolase_6: Haloacid 33.1 1.3E+02 0.0028 19.1 5.0 40 51-91 15-57 (101)
316 TIGR01533 lipo_e_P4 5'-nucleot 33.0 1.6E+02 0.0035 22.6 5.7 80 9-91 74-161 (266)
317 PF02484 Rhabdo_NV: Rhabdoviru 32.8 13 0.00028 23.7 -0.2 21 123-143 24-44 (111)
318 cd03031 GRX_GRX_like Glutaredo 32.8 1.7E+02 0.0036 20.3 5.3 38 43-89 15-53 (147)
319 PRK13601 putative L7Ae-like ri 32.7 1.3E+02 0.0027 18.7 6.7 49 60-112 18-70 (82)
320 PF11360 DUF3110: Protein of u 32.6 1.3E+02 0.0028 18.9 6.6 68 17-100 10-77 (86)
321 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.4 53 0.0011 21.3 2.7 30 53-83 60-89 (126)
322 PF03960 ArsC: ArsC family; I 32.3 1E+02 0.0022 19.9 4.0 50 57-109 11-64 (110)
323 TIGR03351 PhnX-like phosphonat 32.2 1.4E+02 0.0029 21.5 5.1 39 52-91 89-127 (220)
324 PF14062 DUF4253: Domain of un 31.5 69 0.0015 21.1 3.1 34 52-89 33-77 (111)
325 PRK01122 potassium-transportin 31.5 1.1E+02 0.0023 27.0 5.0 33 57-90 452-484 (679)
326 PRK09570 rpoH DNA-directed RNA 31.5 1.3E+02 0.0029 18.6 4.9 34 77-111 19-53 (79)
327 cd03045 GST_N_Delta_Epsilon GS 31.5 20 0.00044 20.9 0.5 52 41-101 6-59 (74)
328 TIGR01698 PUNP purine nucleoti 31.3 2.2E+02 0.0047 21.5 6.1 63 8-75 27-91 (237)
329 TIGR01675 plant-AP plant acid 30.8 1.4E+02 0.0031 22.4 5.0 41 51-92 121-164 (229)
330 PRK12702 mannosyl-3-phosphogly 30.8 1.8E+02 0.004 22.9 5.7 44 55-101 23-66 (302)
331 COG2761 FrnE Predicted dithiol 30.7 58 0.0013 24.5 2.9 32 31-63 3-34 (225)
332 KOG0713|consensus 30.6 20 0.00043 28.5 0.4 32 75-109 50-82 (336)
333 TIGR01689 EcbF-BcbF capsule bi 30.5 1.5E+02 0.0032 20.0 4.6 38 53-91 27-79 (126)
334 TIGR01668 YqeG_hyp_ppase HAD s 30.4 1.9E+02 0.0041 20.1 7.1 39 52-91 45-84 (170)
335 TIGR03590 PseG pseudaminic aci 30.4 2.5E+02 0.0053 21.4 6.9 31 60-91 47-82 (279)
336 KOG1615|consensus 30.2 1.9E+02 0.0041 21.5 5.3 38 53-91 91-128 (227)
337 cd05014 SIS_Kpsf KpsF-like pro 30.0 46 0.001 21.7 2.1 30 53-83 61-90 (128)
338 PRK13226 phosphoglycolate phos 30.0 1.7E+02 0.0038 21.3 5.4 45 52-97 97-141 (229)
339 PRK10826 2-deoxyglucose-6-phos 30.0 1.3E+02 0.0028 21.7 4.7 40 52-92 94-133 (222)
340 TIGR01454 AHBA_synth_RP 3-amin 29.6 2E+02 0.0043 20.4 5.5 44 52-96 77-120 (205)
341 PRK14010 potassium-transportin 29.3 1.3E+02 0.0027 26.6 5.0 36 54-90 445-480 (673)
342 PF02575 YbaB_DNA_bd: YbaB/Ebf 29.2 51 0.0011 20.5 2.1 20 126-145 33-53 (93)
343 COG0484 DnaJ DnaJ-class molecu 29.2 23 0.00049 28.7 0.5 33 77-112 40-73 (371)
344 TIGR02742 TrbC_Ftype type-F co 28.9 1.9E+02 0.0041 19.7 7.4 57 53-112 12-71 (130)
345 TIGR02461 osmo_MPG_phos mannos 28.7 2.2E+02 0.0048 20.9 5.7 43 53-98 18-60 (225)
346 TIGR00676 fadh2 5,10-methylene 28.4 1.6E+02 0.0034 22.5 5.0 41 31-78 58-98 (272)
347 PRK01158 phosphoglycolate phos 28.3 1.9E+02 0.0042 20.8 5.4 44 53-99 23-66 (230)
348 TIGR02253 CTE7 HAD superfamily 28.0 1.5E+02 0.0032 21.2 4.7 43 52-95 96-138 (221)
349 PHA00649 hypothetical protein 27.9 36 0.00079 20.6 1.1 36 53-89 9-44 (83)
350 PRK04011 peptide chain release 27.7 1E+02 0.0022 25.3 4.0 25 54-79 368-392 (411)
351 COG0561 Cof Predicted hydrolas 27.5 1.8E+02 0.0038 21.7 5.1 52 53-107 23-74 (264)
352 COG0415 PhrB Deoxyribodipyrimi 27.5 1.5E+02 0.0032 24.9 4.9 38 53-91 55-92 (461)
353 TIGR01647 ATPase-IIIA_H plasma 27.3 1.4E+02 0.003 26.5 5.1 38 53-91 445-482 (755)
354 TIGR00099 Cof-subfamily Cof su 27.3 2.2E+02 0.0048 21.0 5.7 43 53-98 19-61 (256)
355 COG0151 PurD Phosphoribosylami 27.3 1.3E+02 0.0028 24.9 4.5 57 53-110 74-139 (428)
356 PRK10200 putative racemase; Pr 27.2 1.8E+02 0.0038 21.7 5.0 46 52-101 61-106 (230)
357 PRK11009 aphA acid phosphatase 27.0 1.4E+02 0.0031 22.4 4.5 37 54-91 118-158 (237)
358 PF00989 PAS: PAS fold; Inter 27.0 76 0.0016 19.4 2.7 13 126-138 14-27 (113)
359 TIGR01482 SPP-subfamily Sucros 26.8 2.2E+02 0.0048 20.3 5.5 38 53-91 18-55 (225)
360 TIGR01497 kdpB K+-transporting 26.8 1.5E+02 0.0033 26.1 5.1 33 57-90 453-485 (675)
361 PRK01973 septum formation inhi 26.8 2.6E+02 0.0057 21.6 5.9 57 26-91 43-99 (271)
362 PLN02770 haloacid dehalogenase 26.7 2.1E+02 0.0045 21.2 5.4 43 52-95 110-152 (248)
363 cd03037 GST_N_GRX2 GST_N famil 26.7 1.3E+02 0.0029 17.1 4.6 8 41-48 6-13 (71)
364 COG3054 Predicted transcriptio 26.7 1.4E+02 0.0031 21.2 4.0 37 95-140 128-165 (184)
365 COG1490 Dtd D-Tyr-tRNAtyr deac 26.7 82 0.0018 21.8 2.8 32 70-103 30-61 (145)
366 COG3563 KpsC Capsule polysacch 26.6 1.3E+02 0.0028 25.6 4.4 76 38-130 338-413 (671)
367 PF12017 Tnp_P_element: Transp 26.5 1.2E+02 0.0026 22.9 4.0 39 52-91 195-233 (236)
368 COG1636 Uncharacterized protei 26.5 2.7E+02 0.0058 20.6 6.7 47 33-91 5-62 (204)
369 cd00860 ThrRS_anticodon ThrRS 26.4 1.5E+02 0.0033 17.7 5.8 47 52-101 14-61 (91)
370 PF03470 zf-XS: XS zinc finger 26.1 32 0.00069 18.7 0.6 6 44-49 1-6 (43)
371 cd03040 GST_N_mPGES2 GST_N fam 26.0 1.4E+02 0.0031 17.3 4.9 48 41-100 7-54 (77)
372 PF06888 Put_Phosphatase: Puta 26.0 2.1E+02 0.0046 21.5 5.2 22 88-111 88-113 (234)
373 cd03052 GST_N_GDAP1 GST_N fami 26.0 85 0.0019 18.5 2.6 38 63-101 20-59 (73)
374 TIGR01489 DKMTPPase-SF 2,3-dik 25.9 2.1E+02 0.0045 19.6 5.1 38 53-91 75-112 (188)
375 PF02055 Glyco_hydro_30: O-Gly 25.5 93 0.002 26.2 3.5 34 54-88 209-260 (496)
376 PRK10853 putative reductase; P 25.4 1.3E+02 0.0028 19.9 3.6 47 60-111 18-68 (118)
377 PRK13738 conjugal transfer pil 25.1 2.9E+02 0.0063 20.5 9.3 37 94-141 165-203 (209)
378 TIGR01680 Veg_Stor_Prot vegeta 25.1 1.7E+02 0.0038 22.7 4.7 40 51-91 146-188 (275)
379 TIGR01511 ATPase-IB1_Cu copper 24.9 1.8E+02 0.0039 24.8 5.2 39 52-91 407-445 (562)
380 COG4676 Uncharacterized protei 24.8 59 0.0013 24.4 2.0 52 94-154 93-146 (268)
381 PF00626 Gelsolin: Gelsolin re 24.8 81 0.0018 18.4 2.4 18 126-143 20-37 (76)
382 PF12689 Acid_PPase: Acid Phos 24.6 2.5E+02 0.0054 20.0 5.1 38 53-91 48-86 (169)
383 cd02008 TPP_IOR_alpha Thiamine 24.5 52 0.0011 23.2 1.7 24 40-65 3-26 (178)
384 PF10055 DUF2292: Uncharacteri 24.5 1.2E+02 0.0025 16.1 2.6 15 126-140 19-33 (38)
385 PF02593 dTMP_synthase: Thymid 24.5 3E+02 0.0066 20.5 7.7 74 53-139 62-149 (217)
386 TIGR01370 cysRS possible cyste 24.4 2.5E+02 0.0053 22.3 5.5 49 52-104 250-309 (315)
387 TIGR02463 MPGP_rel mannosyl-3- 24.4 2.7E+02 0.0059 19.9 5.8 47 53-101 19-65 (221)
388 TIGR00591 phr2 photolyase PhrI 24.1 2.1E+02 0.0045 23.6 5.3 38 53-91 78-115 (454)
389 PRK14988 GMP/IMP nucleotidase; 24.0 2E+02 0.0043 21.1 4.7 39 52-91 95-133 (224)
390 TIGR02826 RNR_activ_nrdG3 anae 23.9 82 0.0018 21.8 2.5 73 22-98 6-95 (147)
391 TIGR01512 ATPase-IB2_Cd heavy 23.8 1.9E+02 0.0042 24.4 5.2 39 52-91 364-403 (536)
392 TIGR01544 HAD-SF-IE haloacid d 23.8 3E+02 0.0065 21.4 5.8 38 52-90 123-160 (277)
393 PRK15126 thiamin pyrimidine py 23.7 2.7E+02 0.0058 20.8 5.6 44 53-99 22-65 (272)
394 PRK08674 bifunctional phosphog 23.5 2.6E+02 0.0056 22.0 5.6 36 53-91 92-127 (337)
395 TIGR03556 photolyase_8HDF deox 23.4 2.1E+02 0.0046 23.8 5.3 39 52-91 54-92 (471)
396 PTZ00106 60S ribosomal protein 23.4 2.2E+02 0.0048 18.6 6.6 48 61-111 36-87 (108)
397 TIGR03831 YgiT_finger YgiT-typ 23.3 56 0.0012 17.1 1.3 20 29-48 20-39 (46)
398 COG0694 Thioredoxin-like prote 23.3 2.1E+02 0.0046 18.3 4.7 44 17-64 27-73 (93)
399 PRK13223 phosphoglycolate phos 23.2 2.7E+02 0.0059 21.0 5.5 43 52-95 103-145 (272)
400 PF08448 PAS_4: PAS fold; Int 23.0 1E+02 0.0022 18.7 2.7 13 126-138 8-21 (110)
401 PLN03243 haloacid dehalogenase 22.9 2.2E+02 0.0049 21.5 4.9 43 52-95 111-153 (260)
402 COG0248 GppA Exopolyphosphatas 22.5 3.6E+02 0.0079 22.8 6.4 56 55-112 61-123 (492)
403 PF08235 LNS2: LNS2 (Lipin/Ned 22.4 2.9E+02 0.0062 19.5 5.7 72 18-102 6-85 (157)
404 PRK15122 magnesium-transportin 22.1 1.9E+02 0.0042 26.4 5.0 38 53-91 553-590 (903)
405 KOG1503|consensus 22.1 2.1E+02 0.0046 22.0 4.5 56 43-101 143-200 (354)
406 TIGR01524 ATPase-IIIB_Mg magne 22.1 1.9E+02 0.0041 26.3 4.9 38 53-91 518-555 (867)
407 PRK10517 magnesium-transportin 22.1 1.9E+02 0.0041 26.4 5.0 38 53-91 553-590 (902)
408 PRK11121 nrdG anaerobic ribonu 22.0 2.6E+02 0.0056 19.3 4.8 21 29-49 14-35 (154)
409 cd02983 P5_C P5 family, C-term 21.9 1.1E+02 0.0024 20.5 2.8 8 104-111 71-78 (130)
410 PF08282 Hydrolase_3: haloacid 21.7 2.9E+02 0.0063 19.6 5.3 44 53-99 18-61 (254)
411 PRK10530 pyridoxal phosphate ( 21.7 2.7E+02 0.0059 20.6 5.2 44 53-99 23-66 (272)
412 COG1709 Predicted transcriptio 21.7 1.3E+02 0.0029 22.6 3.3 33 71-112 22-54 (241)
413 TIGR01422 phosphonatase phosph 21.5 1.7E+02 0.0038 21.6 4.1 39 52-91 101-139 (253)
414 PF10453 NUFIP1: Nuclear fragi 21.5 71 0.0015 18.4 1.5 23 73-97 15-37 (56)
415 TIGR00035 asp_race aspartate r 21.5 2.7E+02 0.0058 20.5 5.0 42 52-98 61-103 (229)
416 PF07788 DUF1626: Protein of u 21.5 2E+02 0.0044 17.4 4.8 60 30-90 10-69 (70)
417 TIGR01352 tonB_Cterm TonB fami 21.5 1.1E+02 0.0023 17.6 2.5 16 126-141 15-31 (74)
418 PRK11033 zntA zinc/cadmium/mer 21.4 2.1E+02 0.0046 25.4 5.1 38 53-91 571-608 (741)
419 TIGR01681 HAD-SF-IIIC HAD-supe 21.3 2.5E+02 0.0055 18.5 4.7 37 52-89 31-68 (128)
420 KOG0780|consensus 21.2 4.9E+02 0.011 21.7 7.6 57 29-91 97-158 (483)
421 KOG4614|consensus 20.9 1E+02 0.0022 23.5 2.6 19 124-142 249-268 (287)
422 PF02670 DXP_reductoisom: 1-de 20.8 1.1E+02 0.0024 20.8 2.6 30 70-101 27-57 (129)
423 PF06953 ArsD: Arsenical resis 20.7 1.1E+02 0.0024 20.6 2.6 57 37-95 6-74 (123)
424 TIGR00108 eRF peptide chain re 20.7 1.8E+02 0.004 23.8 4.3 23 56-79 366-388 (409)
425 TIGR01670 YrbI-phosphatas 3-de 20.6 2.3E+02 0.0049 19.4 4.3 33 58-91 36-68 (154)
426 TIGR02652 conserved hypothetic 20.6 36 0.00077 23.6 0.1 18 38-56 6-23 (163)
427 COG1503 eRF1 Peptide chain rel 20.6 2E+02 0.0043 23.8 4.3 22 77-100 366-387 (411)
428 KOG3218|consensus 20.6 3.5E+02 0.0076 20.0 5.2 54 94-148 146-202 (208)
429 cd03056 GST_N_4 GST_N family, 20.6 47 0.001 19.0 0.7 9 93-101 51-59 (73)
430 TIGR03499 FlhF flagellar biosy 20.6 4E+02 0.0086 20.4 6.1 67 33-108 194-267 (282)
431 cd05710 SIS_1 A subgroup of th 20.4 1.1E+02 0.0023 20.1 2.4 28 53-81 61-88 (120)
432 KOG1515|consensus 20.3 2.3E+02 0.0051 22.6 4.7 41 31-76 89-130 (336)
433 TIGR01486 HAD-SF-IIB-MPGP mann 20.3 3.5E+02 0.0076 20.0 5.5 37 54-91 20-56 (256)
434 TIGR01484 HAD-SF-IIB HAD-super 20.2 3.2E+02 0.007 19.2 5.2 34 53-87 20-53 (204)
435 TIGR01487 SPP-like sucrose-pho 20.2 3.1E+02 0.0067 19.6 5.1 38 53-91 21-58 (215)
436 TIGR01261 hisB_Nterm histidino 20.2 2.8E+02 0.0061 19.2 4.7 40 53-95 32-86 (161)
437 cd01452 VWA_26S_proteasome_sub 20.1 3.5E+02 0.0075 19.6 6.5 36 53-89 123-162 (187)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=215.44 Aligned_cols=133 Identities=26% Similarity=0.437 Sum_probs=122.8
Q ss_pred CCccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHH
Q psy5399 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFV 80 (156)
Q Consensus 1 m~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~ 80 (156)
|++++|+++|+|+|+ +.+|++++|++ ++|++|||+|||.++||.|.. |++.|++.+++|++.|+. |++||.|+++.
T Consensus 2 ~~l~~G~~aPdF~Lp-~~~g~~v~Lsd-~~Gk~VVLyFYPk~~TpgCT~-Ea~~Frd~~~ef~~~~a~-V~GIS~Ds~~~ 77 (157)
T COG1225 2 MMLKVGDKAPDFELP-DQDGETVSLSD-LRGKPVVLYFYPKDFTPGCTT-EACDFRDLLEEFEKLGAV-VLGISPDSPKS 77 (157)
T ss_pred CcCCCCCcCCCeEee-cCCCCEEehHH-hcCCcEEEEECCCCCCCcchH-HHHHHHHHHHHHHhCCCE-EEEEeCCCHHH
Confidence 689999999999999 79999999999 799999999999999999996 589999999999999999 99999999999
Q ss_pred HHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCc--ceeeeEEEEEe-CCcEEEEEE
Q psy5399 81 MEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGG--WRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 81 ~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~--~~~~~~~~iid-~G~I~~~~~ 139 (156)
+++|+++++++ |+++||+++.++++||+.......|. ....|+||||| +|+|++++.
T Consensus 78 ~~~F~~k~~L~--f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 78 HKKFAEKHGLT--FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred HHHHHHHhCCC--ceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 99999999999 99999999999999999986643332 34577899999 999999994
No 2
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=100.00 E-value=1.2e-33 Score=199.36 Aligned_cols=149 Identities=49% Similarity=0.876 Sum_probs=132.1
Q ss_pred CCCcCCcceecccCC---CceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 5 VGDTLPDALLHENTP---QTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~---g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
+|+++|+|+++ +.+ |+.++|+++++|+++||+|||+.|||.|..+|++.|++.+++|++.|+.+|++||.|+++.+
T Consensus 1 vG~~aPdF~l~-~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~ 79 (155)
T cd03013 1 VGDKLPNVTLF-EYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVM 79 (155)
T ss_pred CCCcCCCeEee-eeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHH
Confidence 69999999999 575 99999999658999999999999999999533899999999999999933999999999999
Q ss_pred HHHHHHcCC--CcceEEEecCCchhHHhhCCeeeccCCC-cceeeeEEEEEeCCcEEEEEEccCCCceeecchhhhhC
Q psy5399 82 EAWCRKNNA--EGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDELKL 156 (156)
Q Consensus 82 ~~~~~~~~~--~~~f~~~~D~~~~~~~~~gv~~~~~~~~-~~~~~~~~~iid~G~I~~~~~~~~~~~~~~~~~~~~l~ 156 (156)
++|++++++ + ||+++|+++.++++||+..+....| .....|++||||+|+|+|+++.+++.+.+++.++.+|.
T Consensus 80 ~~~~~~~~~~~~--f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId~g~I~~~~~~~~~~~~~~~~~~~~~~ 155 (155)
T cd03013 80 KAWGKALGAKDK--IRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGDVEVSSAENVLK 155 (155)
T ss_pred HHHHHhhCCCCc--EEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEECCCEEEEEEEecCCCCccccCHHHhcC
Confidence 999999998 6 9999999999999999986543122 12358899999999999999999999999999999874
No 3
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.98 E-value=9.4e-32 Score=194.73 Aligned_cols=145 Identities=19% Similarity=0.327 Sum_probs=125.5
Q ss_pred CccCCCcCCcceeccc--CCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 2 CAQVGDTLPDALLHEN--TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~--~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
|+.+|+++|+|+.+.- -+..+++|++ ++||++||+|||++|||.|.. +++.|.+++++|.+.|++ |++||.|++.
T Consensus 1 ~~~~~~~~p~f~~~~~~~g~~~~v~L~d-~~Gk~vvL~F~P~~~~p~C~~-el~~l~~~~~~f~~~g~~-vigIS~D~~~ 77 (187)
T PRK10382 1 MSLINTKIKPFKNQAFKNGEFIEVTEKD-TEGRWSVFFFYPADFTFVCPT-ELGDVADHYEELQKLGVD-VYSVSTDTHF 77 (187)
T ss_pred CCccCCcCCCcEEEEEeCCcceEEEHHH-hCCCeEEEEEECCCCCCcCHH-HHHHHHHHHHHHHhCCCE-EEEEeCCCHH
Confidence 5789999999999842 3456788899 799999999999999999996 699999999999999999 9999999999
Q ss_pred HHHHHHHHc----CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhh
Q psy5399 80 VMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 80 ~~~~~~~~~----~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
.+++|++.. +++ ||+++|++..++++||+..+. .| ...|++|||| +|+|+++++.+.+.+|+++++-+.
T Consensus 78 ~~~a~~~~~~~~~~l~--fpllsD~~~~ia~~ygv~~~~--~g--~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~ 151 (187)
T PRK10382 78 THKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMRED--EG--LADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRK 151 (187)
T ss_pred HHHHHHHhhccccCCc--eeEEEcCchHHHHHcCCCccc--CC--ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence 999999874 566 999999999999999996432 12 2468899999 999999999988888887776655
Q ss_pred h
Q psy5399 155 K 155 (156)
Q Consensus 155 l 155 (156)
|
T Consensus 152 l 152 (187)
T PRK10382 152 I 152 (187)
T ss_pred H
Confidence 4
No 4
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.98 E-value=1.7e-31 Score=195.85 Aligned_cols=145 Identities=22% Similarity=0.412 Sum_probs=124.7
Q ss_pred CccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
|+++|+++|+|++. +..| .++|++ ++||++||+|||++|||+|.. +++.|.+++++|+++|+. |++||.|+.+.+
T Consensus 1 ~~~vG~~aP~F~~~-~~~g-~v~l~d-~~gk~vvL~~~p~~~cp~C~~-El~~l~~~~~~f~~~~~~-vi~vS~D~~~~~ 75 (202)
T PRK13190 1 PVKLGQKAPDFTVN-TTKG-PIDLSK-YKGKWVLLFSHPADFTPVCTT-EFIAFSRRYEDFKKLGVE-LVGLSVDSIYSH 75 (202)
T ss_pred CCCCCCCCCCcEEe-cCCC-cEeHHH-hCCCEEEEEEEcCCCCCCCHH-HHHHHHHHHHHHHHCCCE-EEEEeCCCHHHH
Confidence 57899999999999 6777 799999 699999999999999999995 699999999999999999 999999999888
Q ss_pred HHHHH----HcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 82 EAWCR----KNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 82 ~~~~~----~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
++|++ +.+...+||+++|+++.++++||+..... | .+.|++|||| +|+|+++.+++...+|+.+++.++|
T Consensus 76 ~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~--g--~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l 150 (202)
T PRK13190 76 IAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENS--G--ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRIT 150 (202)
T ss_pred HHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccC--C--cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 77765 35532239999999999999999965321 2 2478899999 9999999999999999988876655
No 5
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.98 E-value=1.7e-31 Score=197.23 Aligned_cols=144 Identities=22% Similarity=0.366 Sum_probs=124.8
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
..+|+++|+|++. +.+|+...+++ ++|+++||+|||++|||+|.. +++.|++++++|+++|+. |++||.|+.+.++
T Consensus 2 ~~~Gd~aPdF~l~-t~~G~~~~~~~-~~Gk~vVL~~~pa~~tpvCt~-El~~l~~~~~~f~~~gv~-vigIS~D~~~~~~ 77 (215)
T PRK13599 2 KLLGEKFPSMEVV-TTQGVKRLPED-YAGKWFVLFSHPADFTPVCTT-EFVEFARKANDFKELNTE-LIGLSVDQVFSHI 77 (215)
T ss_pred CCCCCCCCCCEeE-CCCCcEecHHH-HCCCeEEEEEeCCCCCCcCHH-HHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHH
Confidence 5799999999999 79999888888 799999999999999999995 699999999999999999 9999999999888
Q ss_pred HHHH------HcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 83 AWCR------KNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 83 ~~~~------~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
+|++ ..+++ ||+++|+++.++++||+..... + ..+.|++|||| +|+|+++++++..++|+.+++.++|
T Consensus 78 ~w~~~i~~~~~~~i~--fPil~D~~~~va~~yg~~~~~~--~-~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l 152 (215)
T PRK13599 78 KWVEWIKDNTNIAIP--FPVIADDLGKVSNQLGMIHPGK--G-TNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRAL 152 (215)
T ss_pred HHHHhHHHhcCCCCc--eeEEECCCchHHHHcCCCccCC--C-CceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHH
Confidence 8876 23566 9999999999999999965321 2 23578899999 9999999999988899877766554
No 6
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.98 E-value=1.9e-31 Score=201.10 Aligned_cols=146 Identities=21% Similarity=0.339 Sum_probs=125.7
Q ss_pred CCccCCCcCCcceecccCCC--ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH
Q psy5399 1 MCAQVGDTLPDALLHENTPQ--TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA 78 (156)
Q Consensus 1 m~l~~G~~~P~f~l~~~~~g--~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~ 78 (156)
+++.+|+++|+|++.+..+| +.++|+++++|+++||+|||++|||+|.. |++.|++++++|+++|++ |++||.|++
T Consensus 66 ~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~-El~~l~~~~~ef~~~gv~-VigIS~Ds~ 143 (261)
T PTZ00137 66 TSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPS-ELLGFSERLKEFEERGVK-VLGVSVDSP 143 (261)
T ss_pred ccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHH-HHHHHHHHHHHHHHCCCE-EEEEECCCH
Confidence 35689999999999721344 57999995589999999999999999996 699999999999999999 999999999
Q ss_pred HHHHHHHHH-------cCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecc
Q psy5399 79 FVMEAWCRK-------NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSL 150 (156)
Q Consensus 79 ~~~~~~~~~-------~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~ 150 (156)
+.+++|++. .+++ ||+++|+++.++++||+.... | .+.|++|||| +|+|+++++++.+.+|++++
T Consensus 144 ~~h~aw~~~~~~~~g~~~l~--fPlLsD~~~~iakayGv~~~~---g--~a~R~tFIID~dG~I~~~~~~~~~~gr~v~e 216 (261)
T PTZ00137 144 FSHKAWKELDVRQGGVSPLK--FPLFSDISREVSKSFGLLRDE---G--FSHRASVLVDKAGVVKHVAVYDLGLGRSVDE 216 (261)
T ss_pred HHHHHHHhhhhhhccccCcc--eEEEEcCChHHHHHcCCCCcC---C--ceecEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 889998874 4566 999999999999999996421 3 3578899999 99999999999999998877
Q ss_pred hhhhh
Q psy5399 151 VDELK 155 (156)
Q Consensus 151 ~~~~l 155 (156)
+-++|
T Consensus 217 iLr~l 221 (261)
T PTZ00137 217 TLRLF 221 (261)
T ss_pred HHHHH
Confidence 76654
No 7
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.97 E-value=2.6e-31 Score=196.35 Aligned_cols=145 Identities=22% Similarity=0.401 Sum_probs=123.7
Q ss_pred CccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
++.+|+++|+|++. +.+|+ +++++.++||++||+|||++|||.|.. +++.|++++++|+++|++ |++||.|+...+
T Consensus 6 ~~~iG~~aPdF~l~-~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~t-El~~l~~~~~ef~~~g~~-VigvS~Ds~~~h 81 (215)
T PRK13191 6 IPLIGEKFPEMEVI-TTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTT-EFYSFAKKYEEFKKLNTE-LIGLSVDSNISH 81 (215)
T ss_pred cccCCCcCCCCEee-cCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHH-HHHHHHHHHHHHHHCCCE-EEEEECCCHHHH
Confidence 46799999999999 68886 566554799999999999999999996 599999999999999999 999999999988
Q ss_pred HHHHH------HcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhh
Q psy5399 82 EAWCR------KNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 82 ~~~~~------~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
++|++ ..+++ ||+++|+++.++++||+..+.. ...+.|++|||| +|+|+++++++.+++|+++++-++
T Consensus 82 ~aw~~~~~~~~~~~i~--fPllsD~~~~ia~~ygv~~~~~---~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~ 156 (215)
T PRK13191 82 IEWVMWIEKNLKVEVP--FPIIADPMGNVAKRLGMIHAES---STATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRA 156 (215)
T ss_pred HHHHhhHHHhcCCCCc--eEEEECCchHHHHHcCCccccc---CCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence 88765 13455 9999999999999999975321 123578899999 999999999999999988777665
Q ss_pred h
Q psy5399 155 K 155 (156)
Q Consensus 155 l 155 (156)
|
T Consensus 157 l 157 (215)
T PRK13191 157 I 157 (215)
T ss_pred H
Confidence 5
No 8
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.97 E-value=2.8e-31 Score=192.69 Aligned_cols=142 Identities=25% Similarity=0.402 Sum_probs=121.7
Q ss_pred cCCCcCCcceeccc-CCCc--eeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHH
Q psy5399 4 QVGDTLPDALLHEN-TPQT--KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFV 80 (156)
Q Consensus 4 ~~G~~~P~f~l~~~-~~g~--~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~ 80 (156)
.+|+++|+|+++ + .+|+ .+++++ ++||++||+|||++|||+|.. +++.|++++++|.+.|++ |++||.|+++.
T Consensus 3 ~~G~~aP~f~l~-~~~~g~~~~~sl~d-~~Gk~vvl~F~p~~~cp~C~~-el~~l~~~~~~~~~~gv~-vi~VS~D~~~~ 78 (187)
T TIGR03137 3 LINTEIKPFKAT-AYHNGEFVEVTDED-VKGKWSVFFFYPADFTFVCPT-ELEDLADKYAELKKLGVE-VYSVSTDTHFV 78 (187)
T ss_pred ccCCcCCCcEee-eccCCceeEecHHH-HCCCEEEEEEECCCcCCcCHH-HHHHHHHHHHHHHhcCCc-EEEEeCCCHHH
Confidence 689999999999 5 5776 789999 799999999999999999996 699999999999999999 99999999999
Q ss_pred HHHHHHHc----CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 81 MEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 81 ~~~~~~~~----~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
+++|++.. +++ ||+++|+++.++++||+..... | ...|++|||| +|+|+++++.+.+.+|..+++.+.|
T Consensus 79 ~~~~~~~~~~~~~l~--fpllsD~~~~~a~~~gv~~~~~--g--~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l 152 (187)
T TIGR03137 79 HKAWHDTSEAIGKIT--YPMLGDPTGVLTRNFGVLIEEA--G--LADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKI 152 (187)
T ss_pred HHHHHhhhhhccCcc--eeEEECCccHHHHHhCCcccCC--C--ceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHH
Confidence 99998765 566 9999999999999999975321 2 2367799999 9999999998887777666554443
No 9
>PRK13189 peroxiredoxin; Provisional
Probab=99.97 E-value=4.3e-31 Score=196.14 Aligned_cols=145 Identities=23% Similarity=0.418 Sum_probs=124.5
Q ss_pred CccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
|+.+|+++|+|++. +.+|+ +++++.++||++||+|||++|||.|.. +++.|++++++|+++|++ |++||.|+...+
T Consensus 8 ~~~vG~~aPdF~~~-~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~t-El~~l~~~~~ef~~~~v~-VigvS~D~~~~h 83 (222)
T PRK13189 8 MPLIGDKFPEFEVK-TTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTT-EFVAFQKRYDEFRELNTE-LIGLSIDQVFSH 83 (222)
T ss_pred cccCCCcCCCcEeE-cCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHH-HHHHHHHHHHHHHHcCCE-EEEEECCCHHHH
Confidence 46799999999999 68874 788885699999999999999999995 699999999999999999 999999999998
Q ss_pred HHHHHHc------CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhh
Q psy5399 82 EAWCRKN------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 82 ~~~~~~~------~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
++|++.. +++ ||+++|+++.++++||+..... ...+.|++|||| +|+|+++++++.+.+|+.+++.++
T Consensus 84 ~aw~~~~~~~~g~~i~--fPllsD~~~~ia~~ygv~~~~~---~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~ 158 (222)
T PRK13189 84 IKWVEWIKEKLGVEIE--FPIIADDRGEIAKKLGMISPGK---GTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRL 158 (222)
T ss_pred HHHHHhHHHhcCcCcc--eeEEEcCccHHHHHhCCCcccc---CCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence 8888752 355 9999999999999999864221 112578899999 999999999999999998777665
Q ss_pred h
Q psy5399 155 K 155 (156)
Q Consensus 155 l 155 (156)
|
T Consensus 159 l 159 (222)
T PRK13189 159 V 159 (222)
T ss_pred H
Confidence 4
No 10
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.97 E-value=1.2e-30 Score=182.23 Aligned_cols=143 Identities=29% Similarity=0.427 Sum_probs=127.1
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCC-CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKG-KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
|++|+++|+|++. +.+|+.+++++ ++| ++++|+||+++|||.|.. +++.|+++++++++.++. +++||.|+++.+
T Consensus 1 ~~~G~~~p~~~l~-~~~g~~v~l~~-~~g~k~~vl~f~~~~~c~~C~~-~~~~l~~~~~~~~~~~v~-vi~vs~d~~~~~ 76 (149)
T cd03018 1 LEVGDKAPDFELP-DQNGQEVRLSE-FRGRKPVVLVFFPLAFTPVCTK-ELCALRDSLELFEAAGAE-VLGISVDSPFSL 76 (149)
T ss_pred CCCCCcCCCcEec-CCCCCEEeHHH-HcCCCeEEEEEeCCCCCccHHH-HHHHHHHHHHHHHhCCCE-EEEecCCCHHHH
Confidence 5789999999999 79999999999 688 899999999999999995 699999999999999999 999999999999
Q ss_pred HHHHHHcCCCcceEEEecCC--chhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 82 EAWCRKNNAEGKIRFLADPN--LEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~~--~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
++|+++++++ ||+++|.+ +.+++.||+..... + . ..|++|||| +|+|++.+.+++.+.++..+.+++|
T Consensus 77 ~~~~~~~~~~--~~~~~D~~~~~~~~~~~g~~~~~~--~-~-~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 77 RAWAEENGLT--FPLLSDFWPHGEVAKAYGVFDEDL--G-V-AERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred HHHHHhcCCC--ceEecCCCchhHHHHHhCCccccC--C-C-ccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 9999999998 99999988 99999999975321 1 1 245689999 9999999999998888888877665
No 11
>PRK15000 peroxidase; Provisional
Probab=99.97 E-value=1.5e-30 Score=190.43 Aligned_cols=146 Identities=21% Similarity=0.332 Sum_probs=122.7
Q ss_pred ccCCCcCCcceecccCC--Cc---eeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC
Q psy5399 3 AQVGDTLPDALLHENTP--QT---KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND 77 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~--g~---~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~ 77 (156)
..+|+++|+|++. +.. |+ .++++++++||++||+|||++|||.|.. +++.|++++++|+++|++ |++||.|+
T Consensus 2 ~~vg~~aPdF~~~-~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~-El~~l~~~~~~f~~~g~~-vigvS~D~ 78 (200)
T PRK15000 2 VLVTRQAPDFTAA-AVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPS-ELIAFDKRYEEFQKRGVE-VVGVSFDS 78 (200)
T ss_pred CcCCCcCCCCEee-cccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHH-HHHHHHHHHHHHHHCCCE-EEEEECCC
Confidence 4589999999999 553 34 4677774489999999999999999996 699999999999999999 99999999
Q ss_pred HHHHHHHHHH----cCC-CcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecch
Q psy5399 78 AFVMEAWCRK----NNA-EGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLV 151 (156)
Q Consensus 78 ~~~~~~~~~~----~~~-~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~ 151 (156)
++.+++|.+. .+. +.+||+++|+++.+++.||+..... | ...|++|||| +|+|+++++++.+.+|+++++
T Consensus 79 ~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~--g--~~~r~tfiID~~G~I~~~~~~~~~~gr~~~ei 154 (200)
T PRK15000 79 EFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDE--G--VALRGSFLIDANGIVRHQVVNDLPLGRNIDEM 154 (200)
T ss_pred HHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCC--C--cEEeEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 9988888654 443 1139999999999999999975331 2 2578899999 999999999999999998887
Q ss_pred hhhh
Q psy5399 152 DELK 155 (156)
Q Consensus 152 ~~~l 155 (156)
.++|
T Consensus 155 lr~l 158 (200)
T PRK15000 155 LRMV 158 (200)
T ss_pred HHHH
Confidence 7665
No 12
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2e-30 Score=184.74 Aligned_cols=147 Identities=23% Similarity=0.433 Sum_probs=130.8
Q ss_pred CCccCCCcCCcceecccC-CCc---eeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 1 MCAQVGDTLPDALLHENT-PQT---KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 1 m~l~~G~~~P~f~l~~~~-~g~---~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
||+.+|+++|+|+.. .. .|+ ++++++ +.|||+||+|||+++++.|.. |+..+++++++|+++|++ |+++|.|
T Consensus 1 ~~~lIg~~aP~F~~~-a~~~~~~~~~i~l~d-~~gkw~VLff~P~DFTfVCpT-Ei~af~~~y~eF~~~g~e-VigvS~D 76 (194)
T COG0450 1 MMSLIGKKAPDFTAN-AVLGGEIFEEITLSD-YYGKWVVLFFYPADFTFVCPT-EIIAFAKRYEEFQKRGVE-VIGVSTD 76 (194)
T ss_pred CccccCCcCCCcEEE-EEecCceeeEEechh-hcCcEEEEEeccCCCCccCcc-hHHHHHhhhHHHHHcCCE-EEEEecC
Confidence 789999999999999 46 664 999999 567999999999999999995 699999999999999999 9999999
Q ss_pred CHHHHHHHHHH----cCCC-cceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecc
Q psy5399 77 DAFVMEAWCRK----NNAE-GKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSL 150 (156)
Q Consensus 77 ~~~~~~~~~~~----~~~~-~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~ 150 (156)
+...+.+|... .++. .+||+++|++++++++||+..+.+ | .+.|++|||| +|+|+++.+++.++||++++
T Consensus 77 s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~--g--~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dE 152 (194)
T COG0450 77 SVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE--G--LALRGTFIIDPDGVIRHILVNPLTIGRNVDE 152 (194)
T ss_pred cHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC--C--cceeEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence 99999999987 4543 249999999999999999987432 3 2688899999 99999999999999999887
Q ss_pred hhhhh
Q psy5399 151 VDELK 155 (156)
Q Consensus 151 ~~~~l 155 (156)
+-+++
T Consensus 153 ilR~i 157 (194)
T COG0450 153 ILRVI 157 (194)
T ss_pred HHHHH
Confidence 76654
No 13
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.97 E-value=2.1e-30 Score=190.24 Aligned_cols=142 Identities=25% Similarity=0.390 Sum_probs=122.8
Q ss_pred CCCcCCcceecccCCCceeehhhHhCC-CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHH
Q psy5399 5 VGDTLPDALLHENTPQTKIQIADAIKG-KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~g~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 83 (156)
+|+++|+|++. +.+| .+++++ ++| +++||+|||++|||.|.. +++.|++++++|+++|++ |++||.|+.+.+++
T Consensus 1 vG~~aP~F~~~-~~~g-~~~l~d-~~g~k~vvlf~~pa~~cp~C~~-el~~l~~~~~~f~~~gv~-vigvS~D~~~~~~~ 75 (203)
T cd03016 1 LGDTAPNFEAD-TTHG-PIKFHD-YLGDSWGILFSHPADFTPVCTT-ELGAFAKLAPEFKKRNVK-LIGLSVDSVESHIK 75 (203)
T ss_pred CcCCCCCeEEe-cCCC-cEeHHH-HcCCCEEEEEEecCCCCCcCHH-HHHHHHHHHHHHHHcCCE-EEEEECCCHHHHHH
Confidence 59999999999 6777 589999 577 789999999999999996 599999999999999999 99999999998888
Q ss_pred HHHH------cCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 84 WCRK------NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 84 ~~~~------~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
|.+. .+++ ||+++|+++.++++||+..... +.+.+.|++|||| +|+|+++++++...+|+.+++.++|
T Consensus 76 ~~~~i~~~~~~~~~--fpil~D~~~~ia~~yg~~~~~~--~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l 150 (203)
T cd03016 76 WIEDIEEYTGVEIP--FPIIADPDREVAKLLGMIDPDA--GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVV 150 (203)
T ss_pred HHhhHHHhcCCCCc--eeEEECchHHHHHHcCCccccC--CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence 8776 5677 9999999999999999975321 2334578899999 9999999999988899877766554
No 14
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.97 E-value=7.4e-30 Score=183.01 Aligned_cols=141 Identities=23% Similarity=0.392 Sum_probs=119.8
Q ss_pred CCCcCCcceecccCCC----ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHH
Q psy5399 5 VGDTLPDALLHENTPQ----TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFV 80 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~g----~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~ 80 (156)
+|+++|+|+++ +.+| +.++|++ ++||++||+||+++|||.|.. +++.|++++++|.+.|+. |++||.|+.+.
T Consensus 1 vG~~aP~f~~~-~~~g~~~~~~~~l~~-~~Gk~vvl~F~~~~~c~~C~~-~l~~l~~~~~~~~~~~v~-vv~Is~d~~~~ 76 (173)
T cd03015 1 VGKKAPDFKAT-AVVPNGEFKEISLSD-YKGKWVVLFFYPLDFTFVCPT-EIIAFSDRYEEFKKLNAE-VLGVSTDSHFS 76 (173)
T ss_pred CCCcCCCCEee-cccCCCCceEEehHH-hCCCEEEEEEECCCCCCcCHH-HHHHHHHHHHHHHHCCCE-EEEEecCCHHH
Confidence 69999999999 6776 7999999 799999999999999999996 599999999999999999 99999999888
Q ss_pred HHHHHHHc-------CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchh
Q psy5399 81 MEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVD 152 (156)
Q Consensus 81 ~~~~~~~~-------~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~ 152 (156)
+++|.+.. +++ |++++|+++.++++||+..... + ...|++|||| +|+|++.+++..+.++..+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~~--~--~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il 150 (173)
T cd03015 77 HLAWRNTPRKEGGLGKIN--FPLLADPKKKISRDYGVLDEEE--G--VALRGTFIIDPEGIIRHITVNDLPVGRSVDETL 150 (173)
T ss_pred HHHHHHhhhhhCCccCcc--eeEEECCchhHHHHhCCccccC--C--ceeeEEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence 88888774 466 9999999999999999975431 1 2357799999 9999999998877766654444
Q ss_pred hhh
Q psy5399 153 ELK 155 (156)
Q Consensus 153 ~~l 155 (156)
+.|
T Consensus 151 ~~l 153 (173)
T cd03015 151 RVL 153 (173)
T ss_pred HHH
Confidence 433
No 15
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.97 E-value=3.4e-30 Score=179.63 Aligned_cols=144 Identities=25% Similarity=0.399 Sum_probs=120.1
Q ss_pred cCCCcCCcceecc-cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 4 QVGDTLPDALLHE-NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 4 ~~G~~~P~f~l~~-~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
++|+++|+|++++ +.+|+++++++ ++||++||+||.+.|||+|.. ++|.+.+++++|++.++. +++|+.++...++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~-~~p~l~~l~~~~~~~~v~-~v~v~~~~~~~~~ 77 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSD-FKGKPVVVNFWASAWCPPCRK-ELPYLNELQEKYKDKGVD-VVGVSSDDDPPVR 77 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGG-GTTSEEEEEEESTTTSHHHHH-HHHHHHHHHHHHHTTTCE-EEEEEESSSHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHH-hCCCeEEEEEEccCCCCcchh-hhhhHHhhhhhhccCceE-EEEecccCCHHHH
Confidence 6899999999961 49999999999 899999999995559999996 589999999999999999 9999988766699
Q ss_pred HHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 83 AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 83 ~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
+|+++++.+ |+++.|+++.++++||+........+ ...|.+|||| +|+|++.+.+... . ..++++.+|
T Consensus 78 ~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~-~-~~~~~~~~l 146 (146)
T PF08534_consen 78 EFLKKYGIN--FPVLSDPDGALAKALGVTIMEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDP-D-EESDLEAVL 146 (146)
T ss_dssp HHHHHTTTT--SEEEEETTSHHHHHTTCEEECCTTTT-SSSSEEEEEETTSBEEEEEESSBT-T-SHHSHHHHH
T ss_pred HHHHhhCCC--ceEEechHHHHHHHhCCccccccccC-CeecEEEEEECCCEEEEEEeCCCC-C-CCCChhhcC
Confidence 999999998 99999999999999998643211111 2456689998 9999999998877 3 677888776
No 16
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.96 E-value=6.4e-29 Score=172.68 Aligned_cols=139 Identities=24% Similarity=0.399 Sum_probs=117.6
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHH
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 83 (156)
++|+++|+|++. +.+|++++|++ ++||++||+||++.|||+|.. +++.|++++++++ ++. |++||.|+++.+++
T Consensus 1 ~~G~~aP~f~l~-~~~g~~~~l~~-~~gk~vvl~f~~~~~c~~C~~-e~~~l~~~~~~~~--~~~-vi~Is~d~~~~~~~ 74 (143)
T cd03014 1 KVGDKAPDFTLV-TSDLSEVSLAD-FAGKVKVISVFPSIDTPVCAT-QTKRFNKEAAKLD--NTV-VLTISADLPFAQKR 74 (143)
T ss_pred CCCCCCCCcEEE-CCCCcEEeHHH-hCCCeEEEEEEcCCCCCcCHH-HHHHHHHHHHhcC--CCE-EEEEECCCHHHHHH
Confidence 479999999999 79999999999 799999999998877999996 5999999999984 888 99999999999999
Q ss_pred HHHHcCCCcceEEEecCC-chhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhhh
Q psy5399 84 WCRKNNAEGKIRFLADPN-LEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 84 ~~~~~~~~~~f~~~~D~~-~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
|.++++... |++++|.+ +.++++||+..+.. | ...|++|||| +|+|++.+++.+...+ .+++++|
T Consensus 75 ~~~~~~~~~-~~~l~D~~~~~~~~~~gv~~~~~--~--~~~~~~~iid~~G~I~~~~~~~~~~~~--~~~~~~~ 141 (143)
T cd03014 75 WCGAEGVDN-VTTLSDFRDHSFGKAYGVLIKDL--G--LLARAVFVIDENGKVIYVELVPEITDE--PDYEAAL 141 (143)
T ss_pred HHHhcCCCC-ceEeecCcccHHHHHhCCeeccC--C--ccceEEEEEcCCCeEEEEEECCCcccC--CCHHHHh
Confidence 999998622 99999996 99999999976431 2 2357799999 9999999997654332 3555554
No 17
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.96 E-value=1.5e-29 Score=171.35 Aligned_cols=123 Identities=30% Similarity=0.501 Sum_probs=112.5
Q ss_pred CCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHH
Q psy5399 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW 84 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 84 (156)
+|+++|+|++. +.+|+.++|++ ++||+++|+||+++|||.|.. +++.|++++++|++.++. +++||.|+++.+++|
T Consensus 1 vG~~~P~f~l~-~~~g~~~~l~~-l~gk~~vl~f~~~~~c~~c~~-~l~~l~~~~~~~~~~~~~-vi~is~d~~~~~~~~ 76 (124)
T PF00578_consen 1 VGDKAPDFTLT-DSDGKTVSLSD-LKGKPVVLFFWPTAWCPFCQA-ELPELNELYKKYKDKGVQ-VIGISTDDPEEIKQF 76 (124)
T ss_dssp TTSBGGCEEEE-TTTSEEEEGGG-GTTSEEEEEEESTTTSHHHHH-HHHHHHHHHHHHHTTTEE-EEEEESSSHHHHHHH
T ss_pred CcCCCCCcEeE-CCCCCEEEHHH-HCCCcEEEEEeCccCcccccc-chhHHHHHhhhhccceEE-eeecccccccchhhh
Confidence 69999999999 79999999999 599999999998889999995 699999999999999999 999999999999999
Q ss_pred HHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEE
Q psy5399 85 CRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQL 137 (156)
Q Consensus 85 ~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~ 137 (156)
.++++++ ||+++|++..+++.||+.... .....|++|||| +|+|+|+
T Consensus 77 ~~~~~~~--~~~~~D~~~~~~~~~~~~~~~----~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYGLP--FPVLSDPDGELAKAFGIEDEK----DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHTCS--SEEEEETTSHHHHHTTCEETT----TSEESEEEEEEETTSBEEEE
T ss_pred hhhhccc--cccccCcchHHHHHcCCcccc----CCceEeEEEEECCCCEEEeC
Confidence 9999999 999999999999999997532 123577799999 9999985
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.96 E-value=8.9e-29 Score=176.57 Aligned_cols=132 Identities=24% Similarity=0.403 Sum_probs=112.9
Q ss_pred CccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
++++|+++|+|++. +.+|+.+++++ ++||++||+||++.|||+|.. ++|.|+++++++. ++. |++||.|+++.+
T Consensus 17 ~~~~G~~~P~f~l~-~~~g~~v~l~~-~~Gk~vvl~f~~s~~cp~C~~-e~~~l~~~~~~~~--~~~-vv~vs~D~~~~~ 90 (167)
T PRK00522 17 LPQVGDKAPDFTLV-ANDLSDVSLAD-FAGKRKVLNIFPSIDTGVCAT-SVRKFNQEAAELD--NTV-VLCISADLPFAQ 90 (167)
T ss_pred CCCCCCCCCCeEEE-cCCCcEEehHH-hCCCEEEEEEEcCCCCCccHH-HHHHHHHHHHHcC--CcE-EEEEeCCCHHHH
Confidence 36799999999999 79999999999 799999999997666999996 5999999999983 888 999999999999
Q ss_pred HHHHHHcCCCcceEEEecC-CchhHHhhCCeeeccC-CCcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 82 EAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPV-LGGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~-~~~~~~~~gv~~~~~~-~~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
++|+++++++. |++++|. ++.+++.||+...... .| ...|++|||| +|+|++.++.++
T Consensus 91 ~~f~~~~~~~~-~~~lsD~~~~~~~~~~gv~~~~~~~~g--~~~r~tfvId~~G~I~~~~~~~~ 151 (167)
T PRK00522 91 KRFCGAEGLEN-VITLSDFRDHSFGKAYGVAIAEGPLKG--LLARAVFVLDENNKVVYSELVPE 151 (167)
T ss_pred HHHHHhCCCCC-ceEeecCCccHHHHHhCCeecccccCC--ceeeEEEEECCCCeEEEEEECCC
Confidence 99999999863 7999994 5699999999754311 23 2467899999 999999998554
No 19
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.96 E-value=7.6e-29 Score=174.45 Aligned_cols=135 Identities=24% Similarity=0.445 Sum_probs=117.5
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
+++|+++|+|++. +.+|+.+++++ ++||++||+||++.|||+|.. +++.|.++++++.+.+++ +++||.|++++++
T Consensus 4 ~~~g~~~p~f~l~-~~~G~~~~l~~-~~gk~~ll~f~~~~~~p~C~~-~~~~l~~~~~~~~~~~v~-vi~Is~d~~~~~~ 79 (154)
T PRK09437 4 LKAGDIAPKFSLP-DQDGEQVSLTD-FQGQRVLVYFYPKAMTPGCTV-QACGLRDNMDELKKAGVV-VLGISTDKPEKLS 79 (154)
T ss_pred CCCCCcCCCcEee-CCCCCEEeHHH-hCCCCEEEEEECCCCCCchHH-HHHHHHHHHHHHHHCCCE-EEEEcCCCHHHHH
Confidence 7899999999999 79999999999 799999999998889999996 589999999999999999 9999999999999
Q ss_pred HHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCc--ceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 83 AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGG--WRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 83 ~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~--~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
+|+++++++ ||+++|+++.++++||+.......+. ....|++|||| +|+|++++.+..+
T Consensus 80 ~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~ 141 (154)
T PRK09437 80 RFAEKELLN--FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKT 141 (154)
T ss_pred HHHHHhCCC--CeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCc
Confidence 999999998 99999999999999999754321111 11235689999 9999999876544
No 20
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.96 E-value=5.4e-29 Score=182.28 Aligned_cols=144 Identities=22% Similarity=0.325 Sum_probs=122.4
Q ss_pred ccCCCcCCcceecc---cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 3 AQVGDTLPDALLHE---NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 3 l~~G~~~P~f~l~~---~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
+.+|+++|+|++.+ +.+|++++|++ ++||+++|+||+++||++|.. +++.|.+++++|+++|++ |++||.|+..
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d-~~Gk~~lL~F~p~~~~~~C~~-e~~~l~~~~~~f~~~g~~-vv~IS~d~~~ 82 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSS-YKGKWVVLFFYPLDFTFVCPT-EIIQFSDSVKRFNELNCE-VLACSMDSEY 82 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHH-HCCCEEEEEEEcCCCCCcCHH-HHHHHHHHHHHHHHcCCE-EEEEeCCCHH
Confidence 57999999999762 35678999999 799999999999999999996 589999999999999999 9999999998
Q ss_pred HHHHHHHHc-------CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecch
Q psy5399 80 VMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLV 151 (156)
Q Consensus 80 ~~~~~~~~~-------~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~ 151 (156)
...+|.... +++ ||+++|+++.+++.||+..... | ...|++|||| +|+|+++++++.+.+|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~--fpll~D~~~~ia~~ygv~~~~~--g--~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~ 156 (199)
T PTZ00253 83 AHLQWTLQERKKGGLGTMA--IPMLADKTKSIARSYGVLEEEQ--G--VAYRGLFIIDPKGMLRQITVNDMPVGRNVEEV 156 (199)
T ss_pred HHHHHHhChHhhCCccccc--cceEECcHhHHHHHcCCcccCC--C--ceEEEEEEECCCCEEEEEEecCCCCCCCHHHH
Confidence 888875422 245 9999999999999999965321 2 2467899999 999999999988899987776
Q ss_pred hhhh
Q psy5399 152 DELK 155 (156)
Q Consensus 152 ~~~l 155 (156)
.++|
T Consensus 157 l~~l 160 (199)
T PTZ00253 157 LRLL 160 (199)
T ss_pred HHHH
Confidence 6554
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.96 E-value=1.6e-28 Score=169.71 Aligned_cols=137 Identities=32% Similarity=0.557 Sum_probs=118.4
Q ss_pred cCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHH
Q psy5399 8 TLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 87 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~ 87 (156)
++|+|++. +.+|+++++++ ++|++++|+||++.|||+|.. +++.|++++++|++.++. +++||.|+++.+++|+++
T Consensus 1 ~~p~f~l~-~~~g~~~~l~~-~~gk~~ll~f~~~~~c~~C~~-~~~~l~~~~~~~~~~~~~-~i~is~d~~~~~~~~~~~ 76 (140)
T cd02971 1 KAPDFTLP-ATDGGEVSLSD-FKGKWVVLFFYPKDFTPVCTT-ELCAFRDLAEEFAKGGAE-VLGVSVDSPFSHKAWAEK 76 (140)
T ss_pred CCCCceec-cCCCcEEehHH-hCCCeEEEEEeCCCCCCcCHH-HHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHhc
Confidence 47999999 79999999999 699999999999999999996 589999999999888998 999999999999999999
Q ss_pred c-CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhh
Q psy5399 88 N-NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 88 ~-~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
+ +.+ |++++|+++.+++.||+...... +.....|++|||| +|+|++++.++++ ..+..+.+
T Consensus 77 ~~~~~--~~~l~D~~~~~~~~~g~~~~~~~-~~~~~~p~~~lid~~g~i~~~~~~~~~---~~~~~~~~ 139 (140)
T cd02971 77 EGGLN--FPLLSDPDGEFAKAYGVLIEKSA-GGGLAARATFIIDPDGKIRYVEVEPLP---TGRNAEEL 139 (140)
T ss_pred ccCCC--ceEEECCChHHHHHcCCcccccc-ccCceeEEEEEECCCCcEEEEEecCCC---CCcChHhh
Confidence 9 887 99999999999999999864321 1123467899999 9999999999887 33444443
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.96 E-value=2.3e-28 Score=168.98 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=115.6
Q ss_pred CcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHH
Q psy5399 7 DTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 86 (156)
Q Consensus 7 ~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~ 86 (156)
+++|+|++. +.+|+.+++++ ++||+++|+||+++|||+|.. +++.|.++++++.+.++. +++||.|+++++++|++
T Consensus 1 ~~~p~f~l~-~~~g~~~~l~~-~~gk~~ll~f~~~~~cp~C~~-~~~~l~~~~~~~~~~~~~-vv~is~d~~~~~~~~~~ 76 (140)
T cd03017 1 DKAPDFTLP-DQDGETVSLSD-LRGKPVVLYFYPKDDTPGCTK-EACDFRDLYEEFKALGAV-VIGVSPDSVESHAKFAE 76 (140)
T ss_pred CCCCCcccc-CCCCCEEeHHH-hCCCcEEEEEeCCCCCCchHH-HHHHHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHH
Confidence 579999999 79999999999 689999999999999999996 599999999999999998 99999999999999999
Q ss_pred HcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCcee
Q psy5399 87 KNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLT 147 (156)
Q Consensus 87 ~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~ 147 (156)
+++++ ||+++|+++.++++||+..... .+.....|++|||| +|+|++.+.+.. .+++
T Consensus 77 ~~~~~--~~~l~D~~~~~~~~~gv~~~~~-~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~ 134 (140)
T cd03017 77 KYGLP--FPLLSDPDGKLAKAYGVWGEKK-KKYMGIERSTFLIDPDGKIVKVWRKVK-PKGH 134 (140)
T ss_pred HhCCC--ceEEECCccHHHHHhCCccccc-cccCCcceeEEEECCCCEEEEEEecCC-ccch
Confidence 99998 9999999999999999976421 11112346799999 999999998766 3444
No 23
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.95 E-value=8.2e-28 Score=167.50 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=111.5
Q ss_pred cCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHH
Q psy5399 8 TLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 87 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~ 87 (156)
.+|+|+++ +.+|+.++++++.+++++||+|||++|||.|+. +++.|+++++++.+.|+. +++|+.++.+...+|.++
T Consensus 1 ~~p~f~l~-~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~-~~~~l~~~~~~~~~~~v~-vv~V~~~~~~~~~~~~~~ 77 (149)
T cd02970 1 TAPDFELP-DAGGETVTLSALLGEGPVVVVFYRGFGCPFCRE-YLRALSKLLPELDALGVE-LVAVGPESPEKLEAFDKG 77 (149)
T ss_pred CCCCcccc-CCCCCEEchHHHhcCCCEEEEEECCCCChhHHH-HHHHHHHHHHHHHhcCeE-EEEEeCCCHHHHHHHHHh
Confidence 48999999 799999999995456889999999999999995 699999999999999999 999999999988899999
Q ss_pred cCCCcceEEEecCCchhHHhhCCeeecc-------------------CCCcceeeeEEEEEe-CCcEEEEEEc
Q psy5399 88 NNAEGKIRFLADPNLEFTKKLGVEHEIP-------------------VLGGWRSKRYSMVVD-DGKITQLNIE 140 (156)
Q Consensus 88 ~~~~~~f~~~~D~~~~~~~~~gv~~~~~-------------------~~~~~~~~~~~~iid-~G~I~~~~~~ 140 (156)
++++ ||+++|+++.++++||+..... ..+.....|++|||| +|+|++.+++
T Consensus 78 ~~~~--~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 78 KFLP--FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cCCC--CeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 9998 9999999999999999964321 011223578899999 9999999875
No 24
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.3e-25 Score=151.88 Aligned_cols=156 Identities=47% Similarity=0.827 Sum_probs=142.5
Q ss_pred CCccCCCcCCcceeccc-----CC-CceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEe
Q psy5399 1 MCAQVGDTLPDALLHEN-----TP-QTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIA 74 (156)
Q Consensus 1 m~l~~G~~~P~f~l~~~-----~~-g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is 74 (156)
|+.++|+++|..++..- .+ -..++-.++|+||.|||+-.||+++|.|...|+|.+.+++++|+++|+++|++||
T Consensus 1 m~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVS 80 (165)
T COG0678 1 MTIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVS 80 (165)
T ss_pred CccccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEE
Confidence 78999999999999731 12 2567888899999999999999999999998999999999999999999999999
Q ss_pred cCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCC-cceeeeEEEEEeCCcEEEEEEccCCCceeecchhh
Q psy5399 75 VNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDE 153 (156)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~-~~~~~~~~~iid~G~I~~~~~~~~~~~~~~~~~~~ 153 (156)
.+++..+.+|++..+...+..++.|.+++|.+++|...+....| +.++.|+.+|++||+|.+.++++.+..-++|+++.
T Consensus 81 VND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV~nGvV~~~~iE~p~~~~~vS~a~~ 160 (165)
T COG0678 81 VNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSSADT 160 (165)
T ss_pred eCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEEeCCeEEEEEecCCCCceeecCHHH
Confidence 99999999999999987569999999999999999999887665 68999999999999999999999988899999999
Q ss_pred hhC
Q psy5399 154 LKL 156 (156)
Q Consensus 154 ~l~ 156 (156)
||.
T Consensus 161 mL~ 163 (165)
T COG0678 161 MLA 163 (165)
T ss_pred HHh
Confidence 984
No 25
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.93 E-value=8.6e-26 Score=163.38 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=106.9
Q ss_pred CCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--------
Q psy5399 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-------- 76 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-------- 76 (156)
.++.+|+|+++ +.+|++++|++ ++||++||+++|++|||+|.. ++|.|++++++|+++|+. |++||.+
T Consensus 16 ~~~~~p~f~l~-d~~G~~vsLs~-~~Gk~vvlv~n~atwCp~C~~-e~p~l~~l~~~~~~~gv~-vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 16 PTKSFFEFEAI-DIDGQLVQLSK-FKGKKAIIVVNVACKCGLTSD-HYTQLVELYKQYKSQGLE-ILAFPCNQFMEQEPW 91 (183)
T ss_pred CCCcccceEeE-cCCCCEEeHHH-hCCCcEEEEEEECCCCCchHH-HHHHHHHHHHHHhhCCcE-EEEEecccccccCCC
Confidence 56789999999 79999999999 799987665556999999995 699999999999999999 9999864
Q ss_pred CHHHHHHHHH-HcCCCcceEEEec--CCchh-HHhhCCeeecc--------CCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 77 DAFVMEAWCR-KNNAEGKIRFLAD--PNLEF-TKKLGVEHEIP--------VLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~f~~~~D--~~~~~-~~~~gv~~~~~--------~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
+.++.++|.. +++++ ||+++| .++.. ++.|+...... .....|+.+++|||| +|+|++.+.+...
T Consensus 92 ~~~~~~~f~~~~~~~~--fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~ 169 (183)
T PTZ00256 92 DEPEIKEYVQKKFNVD--FPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVN 169 (183)
T ss_pred CHHHHHHHHHHhcCCC--CCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCC
Confidence 3577778864 78999 999965 44433 33442211110 011234455689999 9999999987655
Q ss_pred Cceeecchhhhh
Q psy5399 144 TGLTCSLVDELK 155 (156)
Q Consensus 144 ~~~~~~~~~~~l 155 (156)
.....+.++++|
T Consensus 170 ~~~l~~~I~~ll 181 (183)
T PTZ00256 170 PNEMIQDIEKLL 181 (183)
T ss_pred HHHHHHHHHHHh
Confidence 444445555554
No 26
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.93 E-value=1.2e-25 Score=164.55 Aligned_cols=142 Identities=12% Similarity=0.108 Sum_probs=107.7
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--------
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV-------- 75 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~-------- 75 (156)
..|..+|+|++. +.+|+.++|++ ++||++||+|| ++|||+|.. ++|.|++++++|+++|+. |++|+.
T Consensus 14 ~~~~~~pdf~l~-d~~G~~vsL~~-~kGkvvlv~fw-AswC~~C~~-e~p~L~~l~~~~~~~g~~-vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 14 ELRKSIYDYTVK-TLEGTTVPMSS-LKNKVLMITNS-ASKCGLTKK-HVDQMNRLHSVFNPLGLE-ILAFPTSQFLNQEF 88 (199)
T ss_pred hcCCCCCceEEE-CCCCCEEeHHH-hCCCEEEEEEE-CCCCCChHH-HHHHHHHHHHHHhcCceE-EEEecchhccCCCC
Confidence 478899999999 79999999999 79998888776 999999995 699999999999999999 999985
Q ss_pred CCHHHHHHHHHHcCCCcceEEEecCC------chhHH--------hhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEc
Q psy5399 76 NDAFVMEAWCRKNNAEGKIRFLADPN------LEFTK--------KLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 140 (156)
Q Consensus 76 d~~~~~~~~~~~~~~~~~f~~~~D~~------~~~~~--------~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~ 140 (156)
++++++++|+++++++ ||+++|.+ ..+.+ .|+..... ...+..+++|||| +|+|++.+.+
T Consensus 89 d~~e~~~~f~~~~~~~--fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~---~~i~~~~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 89 PNTKDIRKFNDKNKIK--YNFFEPIEVNGENTHELFKFLKANCDSMHDENGTL---KAIGWNFGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred CCHHHHHHHHHHcCCC--ceeeeeeeccCCccCHHHHHHHHhCcccccccccC---CccCCCCEEEEECCCCcEEEEeCC
Confidence 5788999999999999 99998631 22222 23221100 1112234599999 9999998877
Q ss_pred cCCCceeecchhhhh
Q psy5399 141 PDGTGLTCSLVDELK 155 (156)
Q Consensus 141 ~~~~~~~~~~~~~~l 155 (156)
........+.++.+|
T Consensus 164 ~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 164 RTEPLELEKKIAELL 178 (199)
T ss_pred CCCHHHHHHHHHHHH
Confidence 554444444455444
No 27
>PLN02412 probable glutathione peroxidase
Probab=99.93 E-value=4e-25 Score=157.72 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=109.6
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-------
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN------- 76 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d------- 76 (156)
..-+.+|+|+++ +.+|+.++|++ ++||++||+|| ++|||.|.. ++|.|++++++|+++|+. |++||.+
T Consensus 4 ~~~~~~pdf~l~-d~~G~~v~l~~-~~gk~vlv~f~-a~~C~~c~~-e~~~l~~l~~~~~~~g~~-vvgv~~~~~~~~~~ 78 (167)
T PLN02412 4 ESPKSIYDFTVK-DIGGNDVSLNQ-YKGKVLLIVNV-ASKCGLTDS-NYKELNVLYEKYKEQGFE-ILAFPCNQFLGQEP 78 (167)
T ss_pred ccCCCCCceEEE-CCCCCEEeHHH-hCCCEEEEEEe-CCCCCChHH-HHHHHHHHHHHHhhCCcE-EEEecccccccCCC
Confidence 445789999999 79999999999 79998888888 999999995 589999999999999999 9999863
Q ss_pred -CHHHHH-HHHHHcCCCcceEEEec--CC-chhHHhhCCeeecc-CC-C-cceeeeEEEEEe-CCcEEEEEEccCCCcee
Q psy5399 77 -DAFVME-AWCRKNNAEGKIRFLAD--PN-LEFTKKLGVEHEIP-VL-G-GWRSKRYSMVVD-DGKITQLNIEPDGTGLT 147 (156)
Q Consensus 77 -~~~~~~-~~~~~~~~~~~f~~~~D--~~-~~~~~~~gv~~~~~-~~-~-~~~~~~~~~iid-~G~I~~~~~~~~~~~~~ 147 (156)
+.+++. .|+++++++ ||+++| .+ ...+..|++..... .. + .....|++|||| +|+|++.+.+.......
T Consensus 79 ~~~~~~~~~~~~~~~~~--fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l 156 (167)
T PLN02412 79 GSNEEIQQTVCTRFKAE--FPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKI 156 (167)
T ss_pred CCHHHHHHHHHHccCCC--CceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHH
Confidence 455554 457899999 999974 55 36777776432210 00 1 123356799999 99999999877654444
Q ss_pred ecchhhhh
Q psy5399 148 CSLVDELK 155 (156)
Q Consensus 148 ~~~~~~~l 155 (156)
.+.++.+|
T Consensus 157 ~~~i~~~l 164 (167)
T PLN02412 157 EKDIQNLL 164 (167)
T ss_pred HHHHHHHH
Confidence 44444443
No 28
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.92 E-value=4.1e-25 Score=155.33 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=99.2
Q ss_pred CCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--------CCHHH
Q psy5399 9 LPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFV 80 (156)
Q Consensus 9 ~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--------d~~~~ 80 (156)
+|+|++. +.+|++++|++ ++||+++|+|| ++||| |.. ++|.|++++++|++.|+. |++||. ++++.
T Consensus 2 ~~~f~l~-d~~G~~v~l~~-~~Gk~vvl~fw-atwC~-C~~-e~p~l~~l~~~~~~~~~~-vv~v~~~~~~~~~~~~~~~ 75 (152)
T cd00340 2 IYDFSVK-DIDGEPVSLSK-YKGKVLLIVNV-ASKCG-FTP-QYEGLEALYEKYKDRGLV-VLGFPCNQFGGQEPGSNEE 75 (152)
T ss_pred cceeEEE-CCCCCEEeHHH-hCCCEEEEEEE-cCCCC-chH-HHHHHHHHHHHhcCCCEE-EEEeccCccccCCCCCHHH
Confidence 7999999 79999999999 79999888887 99999 995 699999999999988998 999986 34788
Q ss_pred HHHHHHH-cCCCcceEEEecC--Cch-hHHhhCCeeeccCC---CcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 81 MEAWCRK-NNAEGKIRFLADP--NLE-FTKKLGVEHEIPVL---GGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 81 ~~~~~~~-~~~~~~f~~~~D~--~~~-~~~~~gv~~~~~~~---~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
+++|+++ ++++ ||++.|. ++. .+..|++.....+. +.....|++|||| +|+|++.+.+..
T Consensus 76 ~~~f~~~~~~~~--fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 76 IKEFCETNYGVT--FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred HHHHHHHhcCCC--ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC
Confidence 9999997 8998 9999874 333 45666642211000 0011133599999 999999998864
No 29
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.92 E-value=6.9e-25 Score=154.30 Aligned_cols=133 Identities=8% Similarity=0.143 Sum_probs=101.6
Q ss_pred cceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--------CCHHHHH
Q psy5399 11 DALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVME 82 (156)
Q Consensus 11 ~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--------d~~~~~~ 82 (156)
+|++. +.+|++++|++ ++||++||+|| ++|||+|.. ++|.|++++++|.+.|+. |++|+. ++++.++
T Consensus 4 ~f~l~-~~~G~~~~l~~-~~Gk~vvv~~~-as~C~~c~~-~~~~l~~l~~~~~~~~~~-v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 4 SFEVK-DARGRTVSLEK-YRGKVSLVVNV-ASECGFTDQ-NYRALQELHRELGPSHFN-VLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred cceeE-CCCCCEecHHH-hCCCEEEEEEe-CCCCCchhh-hHHHHHHHHHHHhhCCeE-EEEEeccccccCCCCCHHHHH
Confidence 68999 79999999999 79998888876 999999995 699999999999999999 999984 6688999
Q ss_pred HHHHH-cCCCcceEEEecC-----CchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhh
Q psy5399 83 AWCRK-NNAEGKIRFLADP-----NLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDE 153 (156)
Q Consensus 83 ~~~~~-~~~~~~f~~~~D~-----~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~ 153 (156)
+|+++ ++++ ||+++|. +...+..|++.... +.+.+.+++|||| +|+|++.+.++.......++++.
T Consensus 79 ~f~~~~~~~~--fp~~~d~~~~~~~~~~~~~~~~~~~~---~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 79 SFARRNYGVT--FPMFSKIKILGSEAEPAFRFLVDSSK---KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred HHHHHhcCCC--CCccceEecCCCCCCcHHHHHHhcCC---CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 99986 8999 9999872 33333344432110 1222244599999 99999999876554333333333
No 30
>KOG0541|consensus
Probab=99.92 E-value=6.6e-24 Score=145.57 Aligned_cols=155 Identities=48% Similarity=0.895 Sum_probs=137.8
Q ss_pred CccCCCcCCc--ceecccCC----CceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 2 CAQVGDTLPD--ALLHENTP----QTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 2 ~l~~G~~~P~--f~l~~~~~----g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
|+.+||.+|+ .++..+.. +.+++++++++||++||+-.|++++|.|...|+|.+...+++++.+|+++|+++|.
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 4789999999 55331111 22899999999999999999999999998899999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeecc-CCCcceeeeEEEEEeCCcEEEEEEccCCCceeecchhhh
Q psy5399 76 NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP-VLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 76 d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~-~~~~~~~~~~~~iid~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
|++..+++|.+.++.+....+++|+++.+.+.+|+..+.. ..+..++.|+.++++||+|.++.+++++.+-+++.++.|
T Consensus 88 nDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vvengkV~~~nvE~~g~~~t~ssa~~i 167 (171)
T KOG0541|consen 88 NDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVVENGKVTVVNVEEGGTDFTVSSAEDI 167 (171)
T ss_pred CcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEEEEeCCeEEEEEeccCCCceEEecHHHH
Confidence 9999999999999886669999999999999999998753 345688999999999999999999999999999999998
Q ss_pred hC
Q psy5399 155 KL 156 (156)
Q Consensus 155 l~ 156 (156)
|.
T Consensus 168 l~ 169 (171)
T KOG0541|consen 168 LK 169 (171)
T ss_pred hh
Confidence 74
No 31
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.92 E-value=1e-24 Score=162.66 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=109.5
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--------
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV-------- 75 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~-------- 75 (156)
..|+.+|+|++. +.+|+.++|++ ++||++||+|| ++|||+|.. ++|.|++++++|+++|+. |++|+.
T Consensus 74 ~~g~~aPdF~l~-d~~G~~vsLsd-~kGK~vvl~Fw-AswCp~c~~-e~p~L~~L~~~~~~~Gv~-VIgV~~d~~~~~e~ 148 (236)
T PLN02399 74 ATEKSVHDFTVK-DIDGKDVALSK-FKGKVLLIVNV-ASKCGLTSS-NYSELSHLYEKYKTQGFE-ILAFPCNQFGGQEP 148 (236)
T ss_pred hcCCCCCceEEE-CCCCCEEeHHH-hCCCeEEEEEE-cCCCcchHH-HHHHHHHHHHHHhcCCcE-EEEEecccccccCC
Confidence 478999999999 79999999999 79999999988 999999995 599999999999999999 999996
Q ss_pred CCHHHHHHHH-HHcCCCcceEEEec--CCc-hhHHhhCCeeec-cC-CC-cceeeeEEEEEe-CCcEEEEEEccCCCcee
Q psy5399 76 NDAFVMEAWC-RKNNAEGKIRFLAD--PNL-EFTKKLGVEHEI-PV-LG-GWRSKRYSMVVD-DGKITQLNIEPDGTGLT 147 (156)
Q Consensus 76 d~~~~~~~~~-~~~~~~~~f~~~~D--~~~-~~~~~~gv~~~~-~~-~~-~~~~~~~~~iid-~G~I~~~~~~~~~~~~~ 147 (156)
++.+++++|+ ++++++ ||++.| .++ ..+..|++.... .. .| .....|.+|||| +|+|++.+.+...-...
T Consensus 149 ~s~~ei~~f~~~~~g~~--fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~l 226 (236)
T PLN02399 149 GSNPEIKQFACTRFKAE--FPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQI 226 (236)
T ss_pred CCHHHHHHHHHHhcCCC--CccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHH
Confidence 3567888997 688999 999864 334 455555432100 00 01 112346699999 99999999876543333
Q ss_pred ecchhhhh
Q psy5399 148 CSLVDELK 155 (156)
Q Consensus 148 ~~~~~~~l 155 (156)
.+.++.+|
T Consensus 227 e~~I~~lL 234 (236)
T PLN02399 227 EKDIQKLL 234 (236)
T ss_pred HHHHHHHh
Confidence 34444443
No 32
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.92 E-value=9.4e-25 Score=148.90 Aligned_cols=107 Identities=14% Similarity=0.190 Sum_probs=95.3
Q ss_pred CCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec------CCHHHHHHHHHHcCCCc
Q psy5399 19 PQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV------NDAFVMEAWCRKNNAEG 92 (156)
Q Consensus 19 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~------d~~~~~~~~~~~~~~~~ 92 (156)
.|+++++++ ++||++||+|| ++|||+|.. ++|.|++++++|++.++. +++|+. ++++++++|+++++++
T Consensus 12 ~~~~v~l~~-~~gk~vvl~F~-a~~C~~C~~-~~p~l~~l~~~~~~~~~~-vi~i~~~~~~~~~~~~~~~~~~~~~~~~- 86 (126)
T cd03012 12 TDKPLSLAQ-LRGKVVLLDFW-TYCCINCLH-TLPYLTDLEQKYKDDGLV-VIGVHSPEFAFERDLANVKSAVLRYGIT- 86 (126)
T ss_pred CCCccCHHH-hCCCEEEEEEE-CCCCccHHH-HHHHHHHHHHHcCcCCeE-EEEeccCccccccCHHHHHHHHHHcCCC-
Confidence 357899999 69999999887 999999995 599999999999988898 999976 4688999999999999
Q ss_pred ceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEcc
Q psy5399 93 KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEP 141 (156)
Q Consensus 93 ~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~ 141 (156)
||+++|+++.+++.||+.. .|++|||| +|+|++++.++
T Consensus 87 -~p~~~D~~~~~~~~~~v~~----------~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 87 -YPVANDNDYATWRAYGNQY----------WPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred -CCEEECCchHHHHHhCCCc----------CCeEEEECCCCcEEEEEecC
Confidence 9999999999999999842 45699999 99999999875
No 33
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.92 E-value=2.1e-24 Score=154.33 Aligned_cols=121 Identities=23% Similarity=0.283 Sum_probs=106.4
Q ss_pred CCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--------C
Q psy5399 6 GDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN--------D 77 (156)
Q Consensus 6 G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d--------~ 77 (156)
|+++|+|++. +.+|++++++++.+|+++||+|| ++|||.|.. +++.|++++++|++.++. +++||.| +
T Consensus 1 g~~~p~f~l~-~~~g~~v~l~~~~~~k~~ll~f~-~t~Cp~c~~-~~~~l~~l~~~~~~~~v~-~v~is~d~~~~~~~d~ 76 (171)
T cd02969 1 GSPAPDFSLP-DTDGKTYSLADFADGKALVVMFI-CNHCPYVKA-IEDRLNRLAKEYGAKGVA-VVAINSNDIEAYPEDS 76 (171)
T ss_pred CCcCCCcccc-CCCCCEEeHHHHhCCCEEEEEEE-CCCCccHHH-HHHHHHHHHHHHhhCCeE-EEEEecCccccccccC
Confidence 7899999999 79999999999338888888887 899999995 589999999999988999 9999985 4
Q ss_pred HHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 78 AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 78 ~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
++++++|+++++++ |+++.|+++.+++.||+.. .|++|||| +|+|++....++
T Consensus 77 ~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~----------~P~~~lid~~G~v~~~~~~~~ 130 (171)
T cd02969 77 PENMKAKAKEHGYP--FPYLLDETQEVAKAYGAAC----------TPDFFLFDPDGKLVYRGRIDD 130 (171)
T ss_pred HHHHHHHHHHCCCC--ceEEECCchHHHHHcCCCc----------CCcEEEECCCCeEEEeecccC
Confidence 78999999999999 9999999999999999942 45589999 999999865443
No 34
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.92 E-value=8.1e-25 Score=158.52 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=106.2
Q ss_pred ccCCCcCCcceecccCC--CceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec-CCHH
Q psy5399 3 AQVGDTLPDALLHENTP--QTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV-NDAF 79 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~--g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~-d~~~ 79 (156)
..+|+++|+|++. +.+ |+.+++.++.+||+++|+|| ++|||+|+. ++|.+++++ ++++. |++|+. ++++
T Consensus 39 ~~~g~~~p~f~l~-~~~g~g~~~~~~~~~~gk~vvv~Fw-atwC~~C~~-e~p~l~~l~----~~~~~-vi~v~~~~~~~ 110 (185)
T PRK15412 39 ALIGKPVPKFRLE-SLENPGQFYQADVLTQGKPVLLNVW-ATWCPTCRA-EHQYLNQLS----AQGIR-VVGMNYKDDRQ 110 (185)
T ss_pred hhcCCCCCCcCCc-cCCCCCccccHHHhcCCCEEEEEEE-CCCCHHHHH-HHHHHHHHH----HcCCE-EEEEECCCCHH
Confidence 3578999999999 677 47778777447999999988 999999995 589998775 35888 999996 4678
Q ss_pred HHHHHHHHcCCCcceE-EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchhhh
Q psy5399 80 VMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 80 ~~~~~~~~~~~~~~f~-~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~~~ 154 (156)
+.++|.++++.+ |+ ++.|+++.+++.||+.. .|++|||| +|+|++.+.++.+...-.+.++.+
T Consensus 111 ~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~~----------~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 111 KAISWLKELGNP--YALSLFDGDGMLGLDLGVYG----------APETFLIDGNGIIRYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred HHHHHHHHcCCC--CceEEEcCCccHHHhcCCCc----------CCeEEEECCCceEEEEEecCCCHHHHHHHHHHH
Confidence 899999999998 88 58899999999999842 45599999 999999999876544434444443
No 35
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.91 E-value=1.5e-23 Score=149.75 Aligned_cols=124 Identities=22% Similarity=0.371 Sum_probs=110.5
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVM 81 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~ 81 (156)
+.+|+++|+|++. +.+|+.+++++ ++|++++|+|| ++|||.|+. +++.+.++++++.+.++. +++|+.| +.+..
T Consensus 35 ~~~g~~~p~~~~~-~~~g~~~~l~~-~~~k~~~l~f~-a~~C~~C~~-~~~~l~~~~~~~~~~~~~-vi~i~~d~~~~~~ 109 (173)
T PRK03147 35 VQVGKEAPNFVLT-DLEGKKIELKD-LKGKGVFLNFW-GTWCKPCEK-EMPYMNELYPKYKEKGVE-IIAVNVDETELAV 109 (173)
T ss_pred cCCCCCCCCcEee-cCCCCEEeHHH-cCCCEEEEEEE-CCcCHHHHH-HHHHHHHHHHHhhcCCeE-EEEEEcCCCHHHH
Confidence 6789999999999 79999999999 79999999988 999999995 589999999999988888 9999986 56788
Q ss_pred HHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 82 EAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
++|.++++++ |+++.|.++.+.+.||+.. .|++|++| +|+|++.+.+...
T Consensus 110 ~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~----------~P~~~lid~~g~i~~~~~g~~~ 160 (173)
T PRK03147 110 KNFVNRYGLT--FPVAIDKGRQVIDAYGVGP----------LPTTFLIDKDGKVVKVITGEMT 160 (173)
T ss_pred HHHHHHhCCC--ceEEECCcchHHHHcCCCC----------cCeEEEECCCCcEEEEEeCCCC
Confidence 9999999998 9999999999999999842 45589998 9999998877554
No 36
>KOG0855|consensus
Probab=99.91 E-value=2e-23 Score=144.88 Aligned_cols=128 Identities=28% Similarity=0.491 Sum_probs=111.2
Q ss_pred CccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 2 CAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 2 ~l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
.++.||.+|+|+|. +.||++++|.++..+++||++|||++.+|.|..+ .+.|.+.|++++..+.+ |+++|.|+...+
T Consensus 62 ~v~~Gd~iPD~tL~-dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQ-aCgFRDnY~k~kka~ae-V~GlS~D~s~sq 138 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLK-DEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQ-ACGFRDNYEKFKKAGAE-VIGLSGDDSASQ 138 (211)
T ss_pred eeecCCcCCCcccc-cCCCCeeeeeeecCCCcEEEEEeccCCCCCcccc-cccccccHHHHhhcCce-EEeeccCchHHH
Confidence 36799999999999 7999999999953345899999999999999977 59999999999999999 999999999999
Q ss_pred HHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEeCCcEEEE
Q psy5399 82 EAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQL 137 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~ 137 (156)
++|+.+..++ |.+++|+.+++.+.||+..+. .|+. ..|..||.++|.++.+
T Consensus 139 KaF~sKqnlP--YhLLSDpk~e~ik~lGa~k~p--~gg~-~~Rsh~if~kg~~k~~ 189 (211)
T KOG0855|consen 139 KAFASKQNLP--YHLLSDPKNEVIKDLGAPKDP--FGGL-PGRSHYIFDKGGVKQL 189 (211)
T ss_pred HHhhhhccCC--eeeecCcchhHHHHhCCCCCC--CCCc-ccceEEEEecCCeEEE
Confidence 9999999999 999999999999999998643 3443 3677899985544333
No 37
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.90 E-value=2.1e-23 Score=151.56 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=98.0
Q ss_pred ccCCCcCCcceecccCCCceeehhh-HhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIAD-AIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~-~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
+++|+++|+|+++ +.+|+.+++++ .++||+++|+|| ++|||+|+. ++|.+.+++++ .+++ +++||.++++++
T Consensus 46 ~~vG~~aP~f~l~-d~~G~~v~l~~~~~~gk~vvl~F~-atwCp~C~~-~lp~l~~~~~~---~~~~-vv~Is~~~~~~~ 118 (189)
T TIGR02661 46 PDVGDAAPIFNLP-DFDGEPVRIGGSIAPGRPTLLMFT-APSCPVCDK-LFPIIKSIARA---EETD-VVMISDGTPAEH 118 (189)
T ss_pred CCCCCcCCCcEec-CCCCCEEeccchhcCCCEEEEEEE-CCCChhHHH-HHHHHHHHHHh---cCCc-EEEEeCCCHHHH
Confidence 6799999999999 79999999953 268999999887 999999995 58999998754 3677 999999999999
Q ss_pred HHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEE
Q psy5399 82 EAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQL 137 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~ 137 (156)
++|+++++++ |+.+. .++.++++||+.. .|++|||| +|+|++.
T Consensus 119 ~~~~~~~~~~--~~~~~-~~~~i~~~y~v~~----------~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 119 RRFLKDHELG--GERYV-VSAEIGMAFQVGK----------IPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHHHHhcCCC--cceee-chhHHHHhccCCc----------cceEEEECCCCeEEEc
Confidence 9999999998 77554 4678999999842 45589999 9999986
No 38
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.90 E-value=1.8e-23 Score=150.01 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=99.6
Q ss_pred ccCCCcCCcceecccCCCc--eeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHH
Q psy5399 3 AQVGDTLPDALLHENTPQT--KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAF 79 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~--~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~ 79 (156)
..+|+++|+|+++ +.+|+ .++++++.+||+++|+|| ++|||.|+. ++|.+++++ ++++. +++|+.+ +.+
T Consensus 34 ~~vG~~ap~f~l~-~~~G~~~~~~~~~~~~gk~vll~F~-a~wC~~C~~-~~p~l~~l~----~~~~~-vi~V~~~~~~~ 105 (173)
T TIGR00385 34 ALIGKPVPAFPLA-ALREPLQAYTPEAFIQGKPVLLNVW-ASWCPPCRA-EHPYLNELA----KDGLP-IVGVDYKDQSQ 105 (173)
T ss_pred hhcCCCCCCcccc-ccCCCCcccCHHHhcCCCEEEEEEE-CCcCHHHHH-HHHHHHHHH----HcCCE-EEEEECCCChH
Confidence 3579999999999 68886 566667447888888888 999999995 589887765 34788 9999975 556
Q ss_pred HHHHHHHHcCCCcceE-EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 80 VMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 80 ~~~~~~~~~~~~~~f~-~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
..++|+++++++ |+ ++.|+++.++++|++.. .|++|+|| +|+|++.+.+..+
T Consensus 106 ~~~~~~~~~~~~--f~~v~~D~~~~~~~~~~v~~----------~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 106 NALKFLKELGNP--YQAILIDPNGKLGLDLGVYG----------APETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred HHHHHHHHcCCC--CceEEECCCCchHHhcCCee----------CCeEEEEcCCceEEEEEeccCC
Confidence 678899999998 97 67899999999999852 45699998 9999999987654
No 39
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.90 E-value=6.6e-23 Score=141.92 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=103.3
Q ss_pred cCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCC-CCcCChhhHHHhHHHHHHcC---CCEEEEEecC----CHH
Q psy5399 8 TLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPG-CSVTHLPGYLAKEKDLKAKG---IHEIFCIAVN----DAF 79 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~-C~~~~l~~l~~~~~~~~~~~---~~~v~~is~d----~~~ 79 (156)
.+|+|++. +.+|+++++++ ++||++||+|| ++||+. |.. +++.|+++++++.+.+ ++ +++||.| +++
T Consensus 1 ~~p~f~l~-~~~g~~~~l~~-~~gk~~vl~f~-~~~C~~~C~~-~l~~l~~~~~~~~~~~~~~v~-~v~vs~d~~~d~~~ 75 (142)
T cd02968 1 IGPDFTLT-DQDGRPVTLSD-LKGKPVLVYFG-YTHCPDVCPT-TLANLAQALKQLGADGGDDVQ-VVFISVDPERDTPE 75 (142)
T ss_pred CCCceEEE-cCCCCEEchHH-hCCCEEEEEEE-cCCCcccCHH-HHHHHHHHHHHhhHhhcCceE-EEEEEECCCCCCHH
Confidence 47999999 79999999999 69999888887 799997 995 5999999999998865 88 9999974 578
Q ss_pred HHHHHHHHcCCCcceEEEecCC---chhHHhhCCeeeccCC----CcceeeeEEEEEe-CCcEEEEE
Q psy5399 80 VMEAWCRKNNAEGKIRFLADPN---LEFTKKLGVEHEIPVL----GGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 80 ~~~~~~~~~~~~~~f~~~~D~~---~~~~~~~gv~~~~~~~----~~~~~~~~~~iid-~G~I~~~~ 138 (156)
.+++|+++++.+ |+++.|++ ..+++.||+....... ......|.+|||| +|+|++++
T Consensus 76 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 76 VLKAYAKAFGPG--WIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred HHHHHHHHhCCC--cEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEee
Confidence 899999999988 99999975 7999999997643211 0112356799999 99999986
No 40
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.89 E-value=1.6e-22 Score=137.77 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=99.7
Q ss_pred CcCCcceecccCCC--ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec-CCHHHHHH
Q psy5399 7 DTLPDALLHENTPQ--TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV-NDAFVMEA 83 (156)
Q Consensus 7 ~~~P~f~l~~~~~g--~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~-d~~~~~~~ 83 (156)
+++|+|+++ +.+| +.+++++ ++|++++|+|| ++|||.|.. ++|.+.++.+++ ++. |++|+. ++.+..++
T Consensus 1 ~~~p~f~~~-~~~g~~~~~~~~~-~~gk~vvv~F~-a~~C~~C~~-~~~~l~~l~~~~---~~~-vv~v~~~~~~~~~~~ 72 (127)
T cd03010 1 KPAPAFSLP-ALPGPDKTLTSAD-LKGKPYLLNVW-ASWCAPCRE-EHPVLMALARQG---RVP-IYGINYKDNPENALA 72 (127)
T ss_pred CCCCCcccc-cccCCCccccHHH-cCCCEEEEEEE-cCcCHHHHH-HHHHHHHHHHhc---CcE-EEEEECCCCHHHHHH
Confidence 368999999 6888 8899999 79999999998 999999996 589999988665 587 999996 57889999
Q ss_pred HHHHcCCCcceE-EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 84 WCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 84 ~~~~~~~~~~f~-~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
|+++++++ |+ ++.|.++.+++.||+.. .|++|++| +|+|++.+.+..
T Consensus 73 ~~~~~~~~--~~~~~~D~~~~~~~~~~v~~----------~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 73 WLARHGNP--YAAVGFDPDGRVGIDLGVYG----------VPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred HHHhcCCC--CceEEECCcchHHHhcCCCC----------CCeEEEECCCceEEEEEeccC
Confidence 99999998 75 77899999999999942 45589998 999999988743
No 41
>KOG0852|consensus
Probab=99.88 E-value=4.8e-22 Score=138.86 Aligned_cols=148 Identities=24% Similarity=0.348 Sum_probs=127.5
Q ss_pred CCccCCCcCCcceecc--cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH
Q psy5399 1 MCAQVGDTLPDALLHE--NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA 78 (156)
Q Consensus 1 m~l~~G~~~P~f~l~~--~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~ 78 (156)
|++.+..++|+|.-.. +-..+.++|++ ++||+|+++|||..++-.|.. |+-.+.+.+++|++.+++ |+++|.|+.
T Consensus 2 ~~~~~~~p~p~fk~~aVVdG~f~e~~L~d-y~gkyvvlfFyplDftfVcPt-eIiafSd~~~eF~~~n~e-Vig~S~DS~ 78 (196)
T KOG0852|consen 2 MMEVVFKPAPDFKGTAVVDGEFKEIKLSD-YKGKYVVLFFYPLDFTFVCPT-EIIAFSDRAPEFRKLNTE-VLGISTDSV 78 (196)
T ss_pred CccccCCCCCCcceeEEEcCcceEEeehh-hcccEEEEEecCCceeeECch-hhhhhhhhHHHHHhcCCe-EEEEeccch
Confidence 5677788889997653 33557999999 799999999999999999995 699999999999999999 999999999
Q ss_pred HHHHHHHHHc----CCCc-ceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchh
Q psy5399 79 FVMEAWCRKN----NAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVD 152 (156)
Q Consensus 79 ~~~~~~~~~~----~~~~-~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~ 152 (156)
..+.+|+..- |+.. ++|+++|.+.++++.||+..+.+ | ...|..|||| +|.+|++.+.+-+++|+++++-
T Consensus 79 fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~--G--~~lRglfIId~~gi~R~it~NDlpvgRSVdE~l 154 (196)
T KOG0852|consen 79 FSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDE--G--IALRGLFIIDPDGILRQITINDLPVGRSVDETL 154 (196)
T ss_pred hhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCC--C--cceeeeEEEccccceEEeeecccCCCccHHHHH
Confidence 9999997543 3322 49999999999999999998653 4 3477899998 9999999999999999999887
Q ss_pred hhh
Q psy5399 153 ELK 155 (156)
Q Consensus 153 ~~l 155 (156)
+|+
T Consensus 155 RLv 157 (196)
T KOG0852|consen 155 RLV 157 (196)
T ss_pred HHH
Confidence 765
No 42
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.88 E-value=4.1e-22 Score=133.15 Aligned_cols=110 Identities=16% Similarity=0.279 Sum_probs=93.0
Q ss_pred CcceecccCCCceeehhhHhC-CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHc
Q psy5399 10 PDALLHENTPQTKIQIADAIK-GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88 (156)
Q Consensus 10 P~f~l~~~~~g~~~~l~~~~~-gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~ 88 (156)
|+|++. +.+|+.++|++ ++ ||+++|+|| ++|||+|+. ++|.+.++++++. .++. +++++.++.+..++|++++
T Consensus 1 p~f~l~-~~~G~~~~l~~-~~~gk~vvl~F~-~~wC~~C~~-~~p~l~~~~~~~~-~~~~-vi~v~~~~~~~~~~~~~~~ 74 (114)
T cd02967 1 PTFDLT-TIDGAPVRIGG-ISPGRPTLLFFL-SPTCPVCKK-LLPVIRSIARAEA-DWLD-VVLASDGEKAEHQRFLKKH 74 (114)
T ss_pred CCceee-cCCCCEEEccc-ccCCCeEEEEEE-CCCCcchHh-HhHHHHHHHHHhc-CCcE-EEEEeCCCHHHHHHHHHHh
Confidence 789999 79999999999 66 999999987 999999995 5899999988874 3577 8888878889999999999
Q ss_pred CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 89 NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 89 ~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
++.. ||++.+ ..++++||+. ..|++|||| +|+|++..
T Consensus 75 ~~~~-~p~~~~--~~~~~~~~~~----------~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 75 GLEA-FPYVLS--AELGMAYQVS----------KLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCCC-CcEEec--HHHHhhcCCC----------CcCeEEEECCCCeEEecc
Confidence 9843 888875 4588999984 256699999 99999864
No 43
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=6.2e-22 Score=135.43 Aligned_cols=132 Identities=28% Similarity=0.458 Sum_probs=117.4
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
+++|+++|+|++. +.+.+.+++++ ++||..+|..||+-.+|.|..+ .+.|++.+.++. ++. |++||.|.|.+++
T Consensus 18 ~~vGd~ap~ftl~-~~dL~~v~l~~-~~gk~~vi~v~PSiDT~VC~~q-vr~Fn~~aa~~~--~~~-Vl~IS~DLPFAq~ 91 (158)
T COG2077 18 PQVGDKAPDFTLV-GKDLNDVSLAD-FAGKKKVISVFPSIDTPVCATQ-VRKFNEEAAKLG--NTV-VLCISMDLPFAQK 91 (158)
T ss_pred CccCCcCCceEEE-cCcccceeccc-cCCceEEEEEccCCCCchhhHH-HHHHHHHHhccC--CcE-EEEEeCCChhHHh
Confidence 7899999999999 79999999999 8999999999999999999965 799999998876 577 9999999999999
Q ss_pred HHHHHcCCCcceEEEecCC-chhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 83 AWCRKNNAEGKIRFLADPN-LEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 83 ~~~~~~~~~~~f~~~~D~~-~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
+||..+|+.+ ...+||.. ..|.++||+.....++.+ ...|+.|++| +|+|+|.++-++
T Consensus 92 RfC~aeGi~n-v~~lSd~r~~~Fge~yGv~I~egpL~g-LlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 92 RFCGAEGIEN-VITLSDFRDRAFGENYGVLINEGPLAG-LLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred hhhhhcCccc-ceEhhhhhhhhhhHhhCEEeccccccC-eeeeEEEEEcCCCcEEEEEccch
Confidence 9999999986 89999975 679999999986643333 4589999999 999999987654
No 44
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.84 E-value=5.7e-20 Score=124.32 Aligned_cols=109 Identities=17% Similarity=0.300 Sum_probs=94.2
Q ss_pred CcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--CHHHHHHHHHH
Q psy5399 10 PDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN--DAFVMEAWCRK 87 (156)
Q Consensus 10 P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d--~~~~~~~~~~~ 87 (156)
|+|++. +.+|+.+++++ .+|++++|+|| ++|||+|+. .+|.+.+++++ +. +++|+.+ +++++++|+++
T Consensus 1 p~f~l~-~~~g~~~~~~~-~~~k~~vl~F~-~~~C~~C~~-~~~~l~~~~~~-----~~-~i~i~~~~~~~~~~~~~~~~ 70 (123)
T cd03011 1 PLFTAT-TLDGEQFDLES-LSGKPVLVYFW-ATWCPVCRF-TSPTVNQLAAD-----YP-VVSVALRSGDDGAVARFMQK 70 (123)
T ss_pred CCceee-cCCCCEeeHHH-hCCCEEEEEEE-CCcChhhhh-hChHHHHHHhh-----CC-EEEEEccCCCHHHHHHHHHH
Confidence 889999 79999999999 68999999988 999999996 47999999866 55 8888865 57999999999
Q ss_pred cCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEcc
Q psy5399 88 NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEP 141 (156)
Q Consensus 88 ~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~ 141 (156)
++++ ||++.|++..+++.|++. ..|+++|+| +| |++...+-
T Consensus 71 ~~~~--~~~~~d~~~~~~~~~~i~----------~~P~~~vid~~g-i~~~~~g~ 112 (123)
T cd03011 71 KGYG--FPVINDPDGVISARWGVS----------VTPAIVIVDPGG-IVFVTTGV 112 (123)
T ss_pred cCCC--ccEEECCCcHHHHhCCCC----------cccEEEEEcCCC-eEEEEecc
Confidence 9998 999999999999999984 255689998 77 98887653
No 45
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.84 E-value=6.1e-21 Score=132.84 Aligned_cols=104 Identities=14% Similarity=0.257 Sum_probs=83.7
Q ss_pred CCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc-------CCCEEEEEecC-CHHHHHHHHHHcCC
Q psy5399 19 PQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK-------GIHEIFCIAVN-DAFVMEAWCRKNNA 90 (156)
Q Consensus 19 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~-------~~~~v~~is~d-~~~~~~~~~~~~~~ 90 (156)
+-..++|++ ++||+++|+|| ++|||+|+. ++|.|.+++++++++ ++. |++||.| +.+..++|.+++++
T Consensus 14 ~~~~~~ls~-~kgk~vlL~Fw-AsWCppCr~-e~P~L~~ly~~~~~~~~~~~~~~~~-vV~Vs~D~~~~~~~~f~~~~~~ 89 (146)
T cd03008 14 DTEREIVAR-LENRVLLLFFG-AVVSPQCQL-FAPKLKDFFVRLTDEFYVDRSAQLA-LVYVSMDQSEQQQESFLKDMPK 89 (146)
T ss_pred hcccccHHH-hCCCEEEEEEE-CCCChhHHH-HHHHHHHHHHHHHhhcccccCCCEE-EEEEECCCCHHHHHHHHHHCCC
Confidence 345778999 79999999998 999999995 699999999988754 577 9999988 45668899999997
Q ss_pred CcceE---EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 91 EGKIR---FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 91 ~~~f~---~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
+ |+ +..+.+..++++||+. ..|++|||| +|+|+...
T Consensus 90 ~--~~~~p~~~~~~~~l~~~y~v~----------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 90 K--WLFLPFEDEFRRELEAQFSVE----------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred C--ceeecccchHHHHHHHHcCCC----------CCCEEEEECCCCcEEeeC
Confidence 6 53 3333346899999984 255599999 99999874
No 46
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.84 E-value=1.5e-20 Score=153.39 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=104.1
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC------
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN------ 76 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d------ 76 (156)
+++++.+|+|++. +.+|+.++++ +||+++|+|| ++|||+|+. ++|.|.+++++++..++. |++|+.+
T Consensus 32 ~~~~~~lP~f~l~-D~dG~~v~ls---kGKpVvV~FW-ATWCppCk~-emP~L~eL~~e~k~~~v~-VI~Vs~~~~~~e~ 104 (521)
T PRK14018 32 ATVPHTLSTLKTA-DNRPASVYLK---KDKPTLIKFW-ASWCPLCLS-ELGETEKWAQDAKFSSAN-LITVASPGFLHEK 104 (521)
T ss_pred ccccCCCCCeEee-cCCCceeecc---CCCEEEEEEE-cCCCHHHHH-HHHHHHHHHHHhccCCeE-EEEEecccccccc
Confidence 4567899999999 7999999987 6999999988 999999995 599999999999877888 9999863
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 77 DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
+.+..++|.+..+++. +|++.|.+..+++.|++. ..|+++||| +|+|++..++..+
T Consensus 105 ~~~~~~~~~~~~~y~~-~pV~~D~~~~lak~fgV~----------giPTt~IIDkdGkIV~~~~G~~~ 161 (521)
T PRK14018 105 KDGDFQKWYAGLDYPK-LPVLTDNGGTLAQSLNIS----------VYPSWAIIGKDGDVQRIVKGSIS 161 (521)
T ss_pred cHHHHHHHHHhCCCcc-cceeccccHHHHHHcCCC----------CcCeEEEEcCCCeEEEEEeCCCC
Confidence 3466777887777643 899999999999999984 255589998 9999999988654
No 47
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.83 E-value=5.5e-20 Score=121.41 Aligned_cols=112 Identities=26% Similarity=0.470 Sum_probs=98.4
Q ss_pred cceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC--HHHHHHHHHHc
Q psy5399 11 DALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND--AFVMEAWCRKN 88 (156)
Q Consensus 11 ~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~--~~~~~~~~~~~ 88 (156)
+|++. +.+|+.+++++ ++|++++|+|| ++||+.|.. .++.+.++.+++.+.++. +++|+.+. ++..+++.+++
T Consensus 1 ~~~~~-~~~g~~~~~~~-~~~k~~ll~f~-~~~C~~C~~-~~~~l~~~~~~~~~~~~~-~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 1 DFSLP-DLDGKPVSLSD-LKGKVVLVNFW-ASWCPPCRA-EMPELEALAKEYKDDGVE-VVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred Ccccc-CCCCCEeehHH-cCCCEEEEEee-cccChhHHH-HhHHHHHHHHHhCCCCeE-EEEEECCCCCHHHHHHHHHHc
Confidence 47788 79999999999 68998888888 889999996 589999999999767888 99999987 89999999999
Q ss_pred CCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEE
Q psy5399 89 NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 89 ~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~ 139 (156)
+.+ |+++.|.+..+++.||+.. .|.++|+| +|+|++.+.
T Consensus 76 ~~~--~~~~~~~~~~~~~~~~~~~----------~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 76 GIT--FPVLLDPDGELAKAYGVRG----------LPTTFLIDRDGRIRARHV 115 (116)
T ss_pred CCC--cceEEcCcchHHHhcCcCc----------cceEEEECCCCcEEEEec
Confidence 988 9999999999999999842 45589998 999998764
No 48
>KOG0854|consensus
Probab=99.83 E-value=5.4e-20 Score=128.87 Aligned_cols=148 Identities=24% Similarity=0.384 Sum_probs=127.2
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
+..|+.+|+|+.. +.-+.+.+-|++.+.|.||+..|+.++|.|.. |+.++.+++.+|..+|+. .+++|.|+.+.++
T Consensus 6 l~lgd~~PNfea~--Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTT-Elgr~Akl~pEF~KRnvK-lialS~d~vesH~ 81 (224)
T KOG0854|consen 6 LRLGDTVPNFEAD--TTVGKIKFHDYLGDSWGVLFSHPADFTPVCTT-ELGRFAKLAPEFDKRNVK-LIALSVDDVESHK 81 (224)
T ss_pred ccccCcCCCcccc--ccccceehhhhcccceEEEecCcccCCcchhH-HHHHHHhhChhhhhcCce-EEEeehhhHHHHH
Confidence 6799999999996 55567999998778899999999999999995 699999999999999999 9999999988887
Q ss_pred HHHHHc-------CCCcceEEEecCCchhHHhhCCeeec--cCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchh
Q psy5399 83 AWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEI--PVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVD 152 (156)
Q Consensus 83 ~~~~~~-------~~~~~f~~~~D~~~~~~~~~gv~~~~--~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~ 152 (156)
.|.+.. .-..+||++.|+++.++-.||..... ...|...+.|+.|||+ +-+|+....+|..+||+.+++-
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGRN~dEiL 161 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGRNFDEIL 161 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCcCHHHHH
Confidence 777654 21124999999999999999998654 3445567899999998 9999999999999999988765
Q ss_pred hh
Q psy5399 153 EL 154 (156)
Q Consensus 153 ~~ 154 (156)
++
T Consensus 162 Rv 163 (224)
T KOG0854|consen 162 RV 163 (224)
T ss_pred HH
Confidence 54
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.81 E-value=9.5e-20 Score=160.08 Aligned_cols=125 Identities=20% Similarity=0.181 Sum_probs=106.3
Q ss_pred ccCCCcCCcceecc-cCCCceeehh-hHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec---C-
Q psy5399 3 AQVGDTLPDALLHE-NTPQTKIQIA-DAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV---N- 76 (156)
Q Consensus 3 l~~G~~~P~f~l~~-~~~g~~~~l~-~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~---d- 76 (156)
...|+++|+|.... +.+|+++++. + ++||++||.|| ++||++|+. ++|.|++++++|+++++. |++|+. |
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~-lkGK~vll~FW-AsWC~pC~~-e~P~L~~l~~~y~~~~~~-vvgV~~~~~D~ 466 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRD-LKGKVVILDFW-TYCCINCMH-VLPDLEFLEKKYKDQPFT-VVGVHSAKFDN 466 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhh-cCCCEEEEEEE-CCcChhHHh-HhHHHHHHHHHcCCCCeE-EEEEecccccc
Confidence 35799999999862 3689999984 6 79999999998 999999995 689999999999988888 999973 2
Q ss_pred --CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 77 --DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 77 --~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
+.++.++++++++++ ||++.|.+..++++|++. ..|+++||| +|+|+....++..
T Consensus 467 ~~~~~~~~~~~~~~~i~--~pvv~D~~~~~~~~~~V~----------~iPt~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 467 EKDLEAIRNAVLRYNIS--HPVVNDGDMYLWRELGVS----------SWPTFAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred cccHHHHHHHHHHhCCC--ccEEECCchHHHHhcCCC----------ccceEEEECCCCeEEEEEecccC
Confidence 457788999999999 999999999999999984 255599998 9999999776543
No 50
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.80 E-value=1.1e-18 Score=125.53 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=96.0
Q ss_pred ccCCCcCCcceecc---------cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEE---
Q psy5399 3 AQVGDTLPDALLHE---------NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEI--- 70 (156)
Q Consensus 3 l~~G~~~P~f~l~~---------~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v--- 70 (156)
+..|+++|..++.+ ..+.+.++.++ ++||..||+|| ++||+.|..+ .|.+.++ +++|+. +
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~-l~GKV~lvn~~-Aswc~~c~~e-~P~l~~l----~~~~~~-~~~y 94 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAE-LAGKVRVVHHI-AGRTSAKEXN-ASLIDAI----KAAKFP-PVKY 94 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHH-cCCCEEEEEEE-ecCCChhhcc-chHHHHH----HHcCCC-cccc
Confidence 57899999998862 23457888899 78998888888 9999999965 6999888 455787 8
Q ss_pred ---EEEecCCH-----HHHHHHHHHcCCCcceE---EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 71 ---FCIAVNDA-----FVMEAWCRKNNAEGKIR---FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 71 ---~~is~d~~-----~~~~~~~~~~~~~~~f~---~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
++|+.|+. .-++.|+++.+.. || ++.|+++.++.+||+. +.+++ +|||| +|+|++.+
T Consensus 95 ~~t~~IN~dd~~~~~~~fVk~fie~~~~~--~P~~~vllD~~g~v~~~~gv~------~~P~T---~fVIDk~GkVv~~~ 163 (184)
T TIGR01626 95 QTTTIINADDAIVGTGMFVKSSAKKGKKE--NPWSQVVLDDKGAVKNAWQLN------SEDSA---IIVLDKTGKVKFVK 163 (184)
T ss_pred cceEEEECccchhhHHHHHHHHHHHhccc--CCcceEEECCcchHHHhcCCC------CCCce---EEEECCCCcEEEEE
Confidence 99998752 3355667777777 77 9999999999999985 22222 48999 99999999
Q ss_pred EccCC
Q psy5399 139 IEPDG 143 (156)
Q Consensus 139 ~~~~~ 143 (156)
.+...
T Consensus 164 ~G~l~ 168 (184)
T TIGR01626 164 EGALS 168 (184)
T ss_pred eCCCC
Confidence 98643
No 51
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.79 E-value=8.9e-19 Score=120.27 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=81.6
Q ss_pred ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc--CCCEEEEEecC-CHHHHHHHHHHcCCCcceEEE
Q psy5399 21 TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK--GIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 21 ~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~~~~v~~is~d-~~~~~~~~~~~~~~~~~f~~~ 97 (156)
+++++++ ++||+++|+|| ++||+.|+. ++|.++++++++++. ++. |++|+.| +.+..++|+++++ + +..+
T Consensus 8 ~~v~l~~-~~Gk~vll~F~-atwC~~C~~-~~p~l~~l~~~~~~~~~~v~-vi~Vs~d~~~~~~~~~~~~~~-~--~~~~ 80 (132)
T cd02964 8 GVVPVSA-LEGKTVGLYFS-ASWCPPCRA-FTPKLVEFYEKLKEEGKNFE-IVFVSRDRSEESFNEYFSEMP-P--WLAV 80 (132)
T ss_pred ccccHHH-hCCCEEEEEEE-CCCCchHHH-HHHHHHHHHHHHhhcCCCeE-EEEEecCCCHHHHHHHHhcCC-C--eEee
Confidence 5999999 79998888887 999999995 589999999999875 677 9999987 4678899999997 4 3333
Q ss_pred --ecC--CchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEE
Q psy5399 98 --ADP--NLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 98 --~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~ 139 (156)
.|. ...+++.||+.. .|+++||| +|+|++...
T Consensus 81 ~~~d~~~~~~~~~~~~v~~----------iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 81 PFEDEELRELLEKQFKVEG----------IPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred ccCcHHHHHHHHHHcCCCC----------CCEEEEECCCCCEEchhH
Confidence 331 256788899842 45589998 999998753
No 52
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.79 E-value=1.4e-18 Score=125.33 Aligned_cols=86 Identities=9% Similarity=0.178 Sum_probs=76.3
Q ss_pred CcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--------CCH
Q psy5399 7 DTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--------NDA 78 (156)
Q Consensus 7 ~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--------d~~ 78 (156)
+.+++|++. +.+|++++|++ ++||++||+|| ++||+.|. + ++.|++++++|+++|+. |++++. ++.
T Consensus 3 ~~~~~f~~~-~~~G~~v~Ls~-~~GKvvLVvf~-AS~C~~~~-q-~~~L~~L~~~y~~~gl~-Vlg~p~nqf~~qe~~~~ 76 (183)
T PRK10606 3 DSILTTVVT-TIDGEVTTLEK-YAGNVLLIVNV-ASKCGLTP-Q-YEQLENIQKAWADQGFV-VLGFPCNQFLGQEPGSD 76 (183)
T ss_pred CCccCcEeE-CCCCCEEeHHH-hCCCEEEEEEE-eCCCCCcH-H-HHHHHHHHHHHhhCCeE-EEEeeccccccCCCCCH
Confidence 358999999 79999999999 79999888886 99999997 4 89999999999999999 999987 467
Q ss_pred HHHHHHHH-HcCCCcceEEEecC
Q psy5399 79 FVMEAWCR-KNNAEGKIRFLADP 100 (156)
Q Consensus 79 ~~~~~~~~-~~~~~~~f~~~~D~ 100 (156)
+++++|++ +++++ ||++++.
T Consensus 77 ~ei~~f~~~~~g~~--Fpv~~k~ 97 (183)
T PRK10606 77 EEIKTYCRTTWGVT--FPMFSKI 97 (183)
T ss_pred HHHHHHHHHccCCC--ceeEEEE
Confidence 88999997 79998 9999444
No 53
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.79 E-value=3.2e-19 Score=122.17 Aligned_cols=108 Identities=16% Similarity=0.306 Sum_probs=84.0
Q ss_pred cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc--CCCEEEEEecCC-HHHHHHHHHHcCCCcc
Q psy5399 17 NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK--GIHEIFCIAVND-AFVMEAWCRKNNAEGK 93 (156)
Q Consensus 17 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~~~~v~~is~d~-~~~~~~~~~~~~~~~~ 93 (156)
+.+|+.+++++ ++||+++|+|| ++||+.|+. ++|.++++++++++. ++. |++||.|. .+..+++.+++++..
T Consensus 5 ~~~G~~v~l~~-~~gk~vll~Fw-a~wC~~C~~-~~p~l~~~~~~~~~~~~~~~-vv~is~d~~~~~~~~~~~~~~~~~- 79 (131)
T cd03009 5 RNDGGKVPVSS-LEGKTVGLYFS-ASWCPPCRA-FTPKLVEFYEKLKESGKNFE-IVFISWDRDEESFNDYFSKMPWLA- 79 (131)
T ss_pred ccCCCCccHHH-hCCcEEEEEEE-CCCChHHHH-HhHHHHHHHHHHHhcCCCEE-EEEEECCCCHHHHHHHHHcCCeeE-
Confidence 68999999999 79999888888 899999996 589999999999865 677 99999874 455667777665321
Q ss_pred eEEE-ecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEE
Q psy5399 94 IRFL-ADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 94 f~~~-~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~ 139 (156)
+++. .|.+..++++||+.. .|+++||| +|+|+....
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~----------~P~~~lid~~G~i~~~~~ 117 (131)
T cd03009 80 VPFSDRERRSRLNRTFKIEG----------IPTLIILDADGEVVTTDA 117 (131)
T ss_pred cccCCHHHHHHHHHHcCCCC----------CCEEEEECCCCCEEcccH
Confidence 3322 244468999999842 45599999 999987753
No 54
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.75 E-value=3e-18 Score=122.76 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=80.6
Q ss_pred CCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHH
Q psy5399 5 VGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW 84 (156)
Q Consensus 5 ~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 84 (156)
+..+-|+|++. +|+.+++++ ++ +|+|| ++|||+|+. ++|.|++++++| ++. |++||.|...
T Consensus 51 ~~~~~~~f~l~---dG~~v~lsd-~~----lV~Fw-aswCp~C~~-e~P~L~~l~~~~---g~~-Vi~Vs~D~~~----- 111 (181)
T PRK13728 51 EKPAPRWFRLS---NGRQVNLAD-WK----VVLFM-QGHCPYCHQ-FDPVLKQLAQQY---GFS-VFPYTLDGQG----- 111 (181)
T ss_pred CCCCCCccCCC---CCCEeehhH-ce----EEEEE-CCCCHhHHH-HHHHHHHHHHHc---CCE-EEEEEeCCCC-----
Confidence 34456677774 899999999 55 66665 999999995 689999999887 688 9999987432
Q ss_pred HHHcCCCcceEEEec-CCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEE-EEEccCC
Q psy5399 85 CRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQ-LNIEPDG 143 (156)
Q Consensus 85 ~~~~~~~~~f~~~~D-~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~-~~~~~~~ 143 (156)
... ||++.| .+..+.+.||+.. ...|++|||| +|+|++ ++++...
T Consensus 112 ----~~~--fPv~~dd~~~~~~~~~g~~~--------~~iPttfLId~~G~i~~~~~~G~~~ 159 (181)
T PRK13728 112 ----DTA--FPEALPAPPDVMQTFFPNIP--------VATPTTFLVNVNTLEALPLLQGATD 159 (181)
T ss_pred ----CCC--CceEecCchhHHHHHhCCCC--------CCCCeEEEEeCCCcEEEEEEECCCC
Confidence 246 999996 5567888888521 2356699999 999975 6777554
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.62 E-value=1.1e-15 Score=98.78 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=69.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH-HcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecC---CchhH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK-AKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADP---NLEFT 105 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~---~~~~~ 105 (156)
||+++|+|| ++||+.|.. ++|.|.+++++|+ +.+++ +++||.|. .++.+++.++.+.+ +..+... ...+.
T Consensus 1 gK~~ll~fw-a~~c~~c~~-~~~~l~~l~~~~~~~~~v~-~v~Vs~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ 75 (95)
T PF13905_consen 1 GKPVLLYFW-ASWCPPCKK-ELPKLKELYKKYKKKDDVE-FVFVSLDEDEEEWKKFLKKNNFP--WYNVPFDDDNNSELL 75 (95)
T ss_dssp TSEEEEEEE--TTSHHHHH-HHHHHHHHHHHHTTTTTEE-EEEEE-SSSHHHHHHHHHTCTTS--SEEEETTTHHHHHHH
T ss_pred CCEEEEEEE-CCCCHHHHH-HHHHHHHHHHHhCCCCCEE-EEEEEeCCCHHHHHHHHHhcCCC--ceEEeeCcchHHHHH
Confidence 788888888 999999996 5899999999998 56777 99999985 58888999999776 5554443 36888
Q ss_pred HhhCCeeeccCCCcceeeeEEEEEe-CCcE
Q psy5399 106 KKLGVEHEIPVLGGWRSKRYSMVVD-DGKI 134 (156)
Q Consensus 106 ~~~gv~~~~~~~~~~~~~~~~~iid-~G~I 134 (156)
+.|++.. .|+++|+| +|+|
T Consensus 76 ~~~~i~~----------iP~~~lld~~G~I 95 (95)
T PF13905_consen 76 KKYGING----------IPTLVLLDPDGKI 95 (95)
T ss_dssp HHTT-TS----------SSEEEEEETTSBE
T ss_pred HHCCCCc----------CCEEEEECCCCCC
Confidence 8999842 55589999 9987
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.53 E-value=1.7e-14 Score=101.36 Aligned_cols=93 Identities=9% Similarity=0.091 Sum_probs=63.8
Q ss_pred CCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 19 PQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 19 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
.|+.+++++ ..+|+|| ++|||+|+. ++|.++++++++ ++. |++|+.|+... .. ||...
T Consensus 43 ~G~~~~l~~-----~~lvnFW-AsWCppCr~-e~P~L~~l~~~~---~~~-Vi~Vs~d~~~~---------~~--fp~~~ 100 (153)
T TIGR02738 43 QGRHANQDD-----YALVFFY-QSTCPYCHQ-FAPVLKRFSQQF---GLP-VYAFSLDGQGL---------TG--FPDPL 100 (153)
T ss_pred cchhhhcCC-----CEEEEEE-CCCChhHHH-HHHHHHHHHHHc---CCc-EEEEEeCCCcc---------cc--ccccc
Confidence 355655555 3477777 999999995 699999999887 577 99999885331 13 77666
Q ss_pred cCCchhH-Hhh---CCeeeccCCCcceeeeEEEEEe-CCcE-EEEEEccCC
Q psy5399 99 DPNLEFT-KKL---GVEHEIPVLGGWRSKRYSMVVD-DGKI-TQLNIEPDG 143 (156)
Q Consensus 99 D~~~~~~-~~~---gv~~~~~~~~~~~~~~~~~iid-~G~I-~~~~~~~~~ 143 (156)
|.+.... ..| ++ ...|++|+|| +|++ +.+..+...
T Consensus 101 ~~~~~~~~~~~~~~~v----------~~iPTt~LID~~G~~i~~~~~G~~s 141 (153)
T TIGR02738 101 PATPEVMQTFFPNPRP----------VVTPATFLVNVNTRKAYPVLQGAVD 141 (153)
T ss_pred CCchHHHHHHhccCCC----------CCCCeEEEEeCCCCEEEEEeecccC
Confidence 6544443 345 44 2356699999 8876 446666554
No 57
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.48 E-value=3.2e-13 Score=96.93 Aligned_cols=128 Identities=22% Similarity=0.298 Sum_probs=94.3
Q ss_pred CCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc--CCCEEEEEecC----CHH
Q psy5399 6 GDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK--GIHEIFCIAVN----DAF 79 (156)
Q Consensus 6 G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~~~~v~~is~d----~~~ 79 (156)
....|+|+|. +.+|+++++++ ++||+++|+|....|--.|.. .+..+.++++++.+. .++ ++.||.| +++
T Consensus 29 ~~~~~~f~L~-d~~G~~~~~~~-~~Gk~~lv~F~yT~CpdvCp~-~l~~l~~~~~~l~~~~~~v~-~v~ISvDP~~DTp~ 104 (174)
T PF02630_consen 29 PRIVPDFTLT-DQDGKTVTLDD-LKGKWVLVFFGYTRCPDVCPT-TLANLSQLQKQLGEEGKDVQ-FVFISVDPERDTPE 104 (174)
T ss_dssp SCSSST-EEE-ETTSSEEEGGG-GTTSEEEEEEE-TTSSSHHHH-HHHHHHHHHHHHHHTTTTEE-EEEEESSTTTC-HH
T ss_pred CccCCCcEEE-cCCCCEecHHH-hCCCeEEEEEEEcCCCccCHH-HHHHHHHHHHHhhhccCceE-EEEEEeCCCCCCHH
Confidence 4567899999 79999999999 799999999885554458995 589999999999875 455 8899975 689
Q ss_pred HHHHHHHHcCCCcceEEEecC---CchhHHhhCCeeeccCC----C---cceeeeEEEEEe-CCcEEEEEEc
Q psy5399 80 VMEAWCRKNNAEGKIRFLADP---NLEFTKKLGVEHEIPVL----G---GWRSKRYSMVVD-DGKITQLNIE 140 (156)
Q Consensus 80 ~~~~~~~~~~~~~~f~~~~D~---~~~~~~~~gv~~~~~~~----~---~~~~~~~~~iid-~G~I~~~~~~ 140 (156)
.+++|++.++.. |..+.-. -..+++.|++....... + ..+ ...++||| +|+|+.++..
T Consensus 105 ~L~~Y~~~~~~~--~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~H-s~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 105 VLKKYAKKFGPD--FIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDH-SAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHCHTTT--CEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEE-SSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHhcCCC--cceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEec-ccEEEEEcCCCcEEEEEcc
Confidence 999999999877 6644332 26788899988643111 1 112 33478888 9999998754
No 58
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=99.30 E-value=1.1e-10 Score=84.94 Aligned_cols=120 Identities=16% Similarity=0.219 Sum_probs=93.6
Q ss_pred ceecccCCCceeehhhHhCCCe-EEEEEee-----CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHH
Q psy5399 12 ALLHENTPQTKIQIADAIKGKK-VIIFGVP-----GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWC 85 (156)
Q Consensus 12 f~l~~~~~g~~~~l~~~~~gk~-vvl~f~~-----~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~ 85 (156)
..+. +.+|+ ++|+|+|.|+. +||+-|. ..-||.|... +-.++.....+.++++. +++||..+.+++.+|+
T Consensus 49 Y~F~-g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~-~D~~~g~l~hL~~rd~t-fa~vSraP~~~i~afk 124 (211)
T PF05988_consen 49 YVFD-GPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFW-ADHIDGALRHLHARDTT-FAVVSRAPLEKIEAFK 124 (211)
T ss_pred eEEe-CCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhh-HhhhhhhHHHHHhCCce-EEEEeCCCHHHHHHHH
Confidence 3444 45555 99999999986 5555443 3459999964 78888888888999999 9999999999999999
Q ss_pred HHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 86 RKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 86 ~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
++.|++ ||.+|..+..+...|++..+......-.+ +|+=|+|+|-+.+..
T Consensus 125 ~rmGW~--~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~s---vF~Rdg~~VfhTyst 174 (211)
T PF05988_consen 125 RRMGWT--FPWYSSYGSDFNYDFGVSFDEGGEMPGLS---VFLRDGGRVFHTYST 174 (211)
T ss_pred HhcCCC--ceEEEcCCCcccccccceeccCCCceeEE---EEEEcCCEEEEEeec
Confidence 999999 99999999999999999765421111122 455568999888764
No 59
>KOG2501|consensus
Probab=99.28 E-value=8.3e-11 Score=81.96 Aligned_cols=111 Identities=15% Similarity=0.294 Sum_probs=84.0
Q ss_pred ceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcC--CCEEEEEecC-CHHHHHHHHHHc
Q psy5399 12 ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKG--IHEIFCIAVN-DAFVMEAWCRKN 88 (156)
Q Consensus 12 f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~--~~~v~~is~d-~~~~~~~~~~~~ 88 (156)
..|. ..+|..+..++.++||.|.|+ |.+.|||.|+. -.|.|.+.|++..+.+ ++ |+.||.| +.+.+..|.+++
T Consensus 15 ~~l~-~~~~~~~~~~~~l~gKvV~ly-FsA~wC~pCR~-FTP~Lk~fYe~l~~~~~~fE-VvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 15 NRLR-KQDGTEVLASEALQGKVVGLY-FSAHWCPPCRD-FTPILKDFYEELKDNAAPFE-VVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred Ceee-ccCCccchHhHhhCCcEEEEE-EEEEECCchhh-CCchHHHHHHHHHhcCCceE-EEEEecCCCHHHHHHHHHhc
Confidence 4566 688889999877899755555 56999999995 5699999999998654 55 9999998 567788888887
Q ss_pred CCCcceEEE---ecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 89 NAEGKIRFL---ADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 89 ~~~~~f~~~---~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
... +.++ .+-..++.++|++. ..|+..+++ +|+++...
T Consensus 91 ~~~--W~~iPf~d~~~~~l~~ky~v~----------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 91 HGD--WLAIPFGDDLIQKLSEKYEVK----------GIPALVILKPDGTVVTED 132 (157)
T ss_pred CCC--eEEecCCCHHHHHHHHhcccC----------cCceeEEecCCCCEehHh
Confidence 655 4443 33347888999984 255578887 99877653
No 60
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.24 E-value=1e-11 Score=86.30 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=66.1
Q ss_pred cCCCceeehhhH-hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 17 NTPQTKIQIADA-IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 17 ~~~g~~~~l~~~-~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
+..+....+.+. .+|++++|+|| ++||++|.. .+|.+.++++++.+ .+. ++.|+.|...
T Consensus 5 ~~~~~~~~~~~a~~~gk~vvV~F~-A~WC~~C~~-~~p~l~~l~~~~~~-~~~-~v~v~vd~~~---------------- 64 (142)
T cd02950 5 QLAASSTPPEVALSNGKPTLVEFY-ADWCTVCQE-MAPDVAKLKQKYGD-QVN-FVMLNVDNPK---------------- 64 (142)
T ss_pred HHhhccCCHHHHHhCCCEEEEEEE-CCcCHHHHH-hHHHHHHHHHHhcc-Cee-EEEEEcCCcc----------------
Confidence 355566666653 36788888887 999999996 47999999999864 366 8888876421
Q ss_pred EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 96 FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 96 ~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
...++++|++. ..|++++++ +|+++....+...
T Consensus 65 -----~~~~~~~~~V~----------~iPt~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 65 -----WLPEIDRYRVD----------GIPHFVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred -----cHHHHHHcCCC----------CCCEEEEECCCCCEEEEEeCCCC
Confidence 12456788884 245588887 9999998887544
No 61
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.23 E-value=1e-11 Score=94.87 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=69.7
Q ss_pred CCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 19 PQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 19 ~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
..+...+++ ++|++++|+|| ++|||+|.. .+|.|+++++++ |+. |++||.|.... .. ||.+
T Consensus 155 ~~~~~~l~~-l~~k~~Lv~F~-AswCp~C~~-~~P~L~~la~~y---g~~-Vi~VsvD~~~~---------~~--fp~~- 215 (271)
T TIGR02740 155 KQKDRVMKD-LAKKSGLFFFF-KSDCPYCHQ-QAPILQAFEDRY---GIE-VLPVSVDGGPL---------PG--FPNA- 215 (271)
T ss_pred HHHHHHHHH-hcCCeEEEEEE-CCCCccHHH-HhHHHHHHHHHc---CcE-EEEEeCCCCcc---------cc--CCcc-
Confidence 345678888 68998888887 889999996 579999999887 577 99999985321 12 6655
Q ss_pred cCCchhHHhhCCeeeccCCCcceeeeEEEEEe-C-CcEEEEEEccC
Q psy5399 99 DPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-D-GKITQLNIEPD 142 (156)
Q Consensus 99 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~-G~I~~~~~~~~ 142 (156)
+.+..++++||+. ..|++||++ + |+|..+.++..
T Consensus 216 ~~d~~la~~~gV~----------~vPtl~Lv~~~~~~v~~v~~G~~ 251 (271)
T TIGR02740 216 RPDAGQAQQLKIR----------TVPAVFLADPDPNQFTPIGFGVM 251 (271)
T ss_pred cCCHHHHHHcCCC----------cCCeEEEEECCCCEEEEEEeCCC
Confidence 4456688999984 255589997 4 56655565543
No 62
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=99.22 E-value=4e-11 Score=88.81 Aligned_cols=133 Identities=17% Similarity=0.235 Sum_probs=96.4
Q ss_pred ccCCCcCCcceecccCCCce-eehhhHhCC-CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC----
Q psy5399 3 AQVGDTLPDALLHENTPQTK-IQIADAIKG-KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN---- 76 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~-~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d---- 76 (156)
..+|.+||+..+. +.+|+. .+|.|+.+| +|+||+|=.++ ||+-.. .++.+++++++|.+. ++ ++.|...
T Consensus 73 a~~G~~APns~vv-~l~g~~~~~ildf~~g~RPLVlnFGS~T-CPpF~~-~l~~f~~l~~~f~d~-ad-Fl~VYI~EAHp 147 (237)
T PF00837_consen 73 AKLGGPAPNSPVV-TLDGQRSCRILDFAKGNRPLVLNFGSCT-CPPFMA-KLDAFKRLVEDFSDV-AD-FLIVYIEEAHP 147 (237)
T ss_pred eeCCCCCCCCceE-eeCCCcceeHHHhccCCCCeEEEccccc-chHHHH-HHHHHHHHHHHhhhh-hh-eehhhHhhhCc
Confidence 4689999999999 799998 999996554 68999985444 888886 489999999999863 45 6666321
Q ss_pred --------------------C-HHHHHHHHHHcCCCcceEEEecC-CchhHHhhCCeeeccCCCcceeeeEEEEEeCCcE
Q psy5399 77 --------------------D-AFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKI 134 (156)
Q Consensus 77 --------------------~-~~~~~~~~~~~~~~~~f~~~~D~-~~~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I 134 (156)
+ -.+.+.+. +.... +|++.|. +..+.++||+..+ - .+||++|+|
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~--~pi~vD~mdN~~~~~YgA~Pe--------R---lyIi~~gkv 213 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQ--CPIVVDTMDNNFNKAYGALPE--------R---LYIIQDGKV 213 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHH-hhCCC--CCEEEEccCCHHHHHhCCCcc--------e---EEEEECCEE
Confidence 0 12233333 33455 9999998 5899999999642 2 688899999
Q ss_pred EEEEEccCCCceeecchhhhh
Q psy5399 135 TQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l 155 (156)
+|.-- +++-+...+++++-|
T Consensus 214 ~Y~Gg-~GP~~y~~~e~r~~L 233 (237)
T PF00837_consen 214 VYKGG-PGPFGYSPEELREWL 233 (237)
T ss_pred EEeCC-CCCCcCCHHHHHHHH
Confidence 99854 445566666666544
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.19 E-value=9.3e-11 Score=77.08 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=57.6
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhh
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~ 108 (156)
.+|++++|.|| ++||+.|+.. +|.|.++++++ .++. ++.|+.|..... ..++++|
T Consensus 13 ~~~k~vvv~F~-a~wC~~C~~~-~p~l~~la~~~--~~v~-~~~vd~d~~~~~--------------------~~l~~~~ 67 (103)
T cd02985 13 AKGRLVVLEFA-LKHSGPSVKI-YPTMVKLSRTC--NDVV-FLLVNGDENDST--------------------MELCRRE 67 (103)
T ss_pred cCCCEEEEEEE-CCCCHhHHHH-hHHHHHHHHHC--CCCE-EEEEECCCChHH--------------------HHHHHHc
Confidence 35888888887 9999999964 79999999998 3566 888887643221 2466777
Q ss_pred CCeeeccCCCcceeeeEEEEEeCCcEEEEEEccCC
Q psy5399 109 GVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 109 gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~ 143 (156)
++.. .|+++++.+|+++....+..+
T Consensus 68 ~V~~----------~Pt~~~~~~G~~v~~~~G~~~ 92 (103)
T cd02985 68 KIIE----------VPHFLFYKDGEKIHEEEGIGP 92 (103)
T ss_pred CCCc----------CCEEEEEeCCeEEEEEeCCCH
Confidence 7742 333555579999888777543
No 64
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.18 E-value=2.6e-10 Score=84.01 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=96.7
Q ss_pred cCC-cceecccCCCceeehhhHhCCCeEEEEEeeCCCCC-CCCcCChhhHHHhHHHHH-HcCCC-EEEEEecC----CHH
Q psy5399 8 TLP-DALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTP-GCSVTHLPGYLAKEKDLK-AKGIH-EIFCIAVN----DAF 79 (156)
Q Consensus 8 ~~P-~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp-~C~~~~l~~l~~~~~~~~-~~~~~-~v~~is~d----~~~ 79 (156)
..+ +|+|. +.+|+.+++.+ ++|++.+|+|... .|| .|.. ++..+.++.+++. ..+.+ +++.||.| +++
T Consensus 45 ~~~g~f~l~-d~~G~~~~~~~-l~Gk~~lv~FgyT-~CpdVCP~-~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 45 YIGGDFELT-DQDGKPFTLKD-LKGKPSLVFFGYT-HCPDVCPT-TLAELKALLKKLGEGEGDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ccCCceeee-cCCCCEeeccc-cCCCEEEEEeecC-CCCccChH-HHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHH
Confidence 344 79999 79999999999 6999999998744 455 8995 5899999999997 33333 27888875 688
Q ss_pred HHHHHHHHcCCCcceEEEecC-C--chhHHhhCCeeec---cC---CCcceeeeEEEEEe-CCcEEEEEEccCCCceeec
Q psy5399 80 VMEAWCRKNNAEGKIRFLADP-N--LEFTKKLGVEHEI---PV---LGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCS 149 (156)
Q Consensus 80 ~~~~~~~~~~~~~~f~~~~D~-~--~~~~~~~gv~~~~---~~---~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~ 149 (156)
.+++|.. .++...|..+... + ..++++|++.... .. ....+ .-..+++| +|++........+-.....
T Consensus 121 ~lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~H-s~~~~lid~~G~~~~~~~~~~~~~~i~~ 198 (207)
T COG1999 121 VLKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDH-SAGFYLIDADGRFLGTYDYGEPPEEIAA 198 (207)
T ss_pred HHHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeee-eeEEEEECCCCeEEEEecCCCChHHHHH
Confidence 8888888 3333226666553 2 6889999998532 11 12223 23357778 9999999876655333333
Q ss_pred chh
Q psy5399 150 LVD 152 (156)
Q Consensus 150 ~~~ 152 (156)
+++
T Consensus 199 ~l~ 201 (207)
T COG1999 199 DLK 201 (207)
T ss_pred HHH
Confidence 333
No 65
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.3e-10 Score=76.10 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=92.9
Q ss_pred CCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--------CHHH
Q psy5399 9 LPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFV 80 (156)
Q Consensus 9 ~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d--------~~~~ 80 (156)
+=+|++. +.+|++++|++ ++||.++|+-. |+-|.+-. + ...|..+|++|+++|+. |+++-.+ +.++
T Consensus 5 ~yd~~~~-~~~G~~~~l~~-~~GkVlLIVNt-ASkCGfTp-Q-YegLe~Ly~ky~~~Gf~-VLgFPcNQF~~QEPg~~eE 78 (162)
T COG0386 5 IYDFSVK-DIDGEPVSLSD-YKGKVLLIVNT-ASKCGFTP-Q-YEGLEALYKKYKDKGFE-VLGFPCNQFGGQEPGSDEE 78 (162)
T ss_pred cccceee-ccCCCCccHHH-hCCcEEEEEEc-ccccCCcH-h-HHHHHHHHHHHhhCCcE-EEeccccccccCCCCCHHH
Confidence 4578888 79999999999 79997666665 88899988 5 68999999999999999 9999553 6788
Q ss_pred HHHHHHH-cCCCcceEEEecCC------chhHHhhCCeeeccCC--CcceeeeEEEEEe-CCcEEEEEEccCCCceeecc
Q psy5399 81 MEAWCRK-NNAEGKIRFLADPN------LEFTKKLGVEHEIPVL--GGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSL 150 (156)
Q Consensus 81 ~~~~~~~-~~~~~~f~~~~D~~------~~~~~~~gv~~~~~~~--~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~ 150 (156)
.++|++. ++.+ ||++.-.+ .-+.+.+--... ... ....+--+=|||| +|+|+..+.....-.....+
T Consensus 79 I~~fC~~~YgVt--Fp~f~Ki~VnG~~a~PLy~~L~~~~~-g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~ 155 (162)
T COG0386 79 IAKFCQLNYGVT--FPMFSKIDVNGKNAHPLYKYLKEQKP-GKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELA 155 (162)
T ss_pred HHHHHHhccCce--eeeeeEEeecCCCCCcHHHHHHhcCC-CCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHH
Confidence 8888875 5777 99885332 122222211100 000 1122233468999 99999998644222222235
Q ss_pred hhhhh
Q psy5399 151 VDELK 155 (156)
Q Consensus 151 ~~~~l 155 (156)
++.+|
T Consensus 156 Ie~lL 160 (162)
T COG0386 156 IEKLL 160 (162)
T ss_pred HHHHh
Confidence 55544
No 66
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.10 E-value=3.8e-10 Score=73.86 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=55.0
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhh
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~ 108 (156)
++|++++|.|| ++||++|+.. +|.|.+++++++ ++. ++.|..++ ....++++|
T Consensus 16 ~~g~~vlV~F~-a~WC~~C~~~-~p~l~~la~~~~--~~~-~~~vd~~~----------------------~~~~l~~~~ 68 (100)
T cd02999 16 NREDYTAVLFY-ASWCPFSASF-RPHFNALSSMFP--QIR-HLAIEESS----------------------IKPSLLSRY 68 (100)
T ss_pred cCCCEEEEEEE-CCCCHHHHhH-hHHHHHHHHHhc--cCc-eEEEECCC----------------------CCHHHHHhc
Confidence 68999999988 9999999964 799999999986 566 77764431 123678899
Q ss_pred CCeeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 109 GVEHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 109 gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
++. ..|+++++++| .+..+.+
T Consensus 69 ~V~----------~~PT~~lf~~g-~~~~~~G 89 (100)
T cd02999 69 GVV----------GFPTILLFNST-PRVRYNG 89 (100)
T ss_pred CCe----------ecCEEEEEcCC-ceeEecC
Confidence 984 24558888977 5544444
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.10 E-value=3.5e-10 Score=75.36 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
+|++++|.|| ++||+.|+.. .|.+.+++++++..++. +..|+.+ .+..++++||
T Consensus 23 ~~~~vlV~F~-a~wC~~C~~~-~p~~~~l~~~~~~~~v~-~~~vd~d-----------------------~~~~l~~~~~ 76 (111)
T cd02963 23 FKKPYLIKIT-SDWCFSCIHI-EPVWKEVIQELEPLGVG-IATVNAG-----------------------HERRLARKLG 76 (111)
T ss_pred CCCeEEEEEE-CCccHhHHHh-hHHHHHHHHHHHhcCce-EEEEecc-----------------------ccHHHHHHcC
Confidence 5788888887 9999999964 79999999999865666 6666544 2345778888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
+. ..|+++++++|+++....+..
T Consensus 77 V~----------~~Pt~~i~~~g~~~~~~~G~~ 99 (111)
T cd02963 77 AH----------SVPAIVGIINGQVTFYHDSSF 99 (111)
T ss_pred Cc----------cCCEEEEEECCEEEEEecCCC
Confidence 84 244477788998876665533
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=98.97 E-value=1.2e-09 Score=72.17 Aligned_cols=77 Identities=8% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.+++++|.|| ++|||.|... +|.+.++++++.. ++. ++.+..+ ....++++|+
T Consensus 20 ~~~~vvv~f~-~~~C~~C~~~-~p~~~~l~~~~~~-~~~-~~~vd~~-----------------------~~~~~~~~~~ 72 (109)
T PRK09381 20 ADGAILVDFW-AEWCGPCKMI-APILDEIADEYQG-KLT-VAKLNID-----------------------QNPGTAPKYG 72 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHhCC-CcE-EEEEECC-----------------------CChhHHHhCC
Confidence 3567888887 8999999964 7999999999864 355 6666543 2334667888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccCC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~ 143 (156)
+. ..|+++++++|++++...+...
T Consensus 73 v~----------~~Pt~~~~~~G~~~~~~~G~~~ 96 (109)
T PRK09381 73 IR----------GIPTLLLFKNGEVAATKVGALS 96 (109)
T ss_pred CC----------cCCEEEEEeCCeEEEEecCCCC
Confidence 73 3555777789999988776543
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.96 E-value=3.9e-10 Score=76.44 Aligned_cols=90 Identities=17% Similarity=0.139 Sum_probs=58.2
Q ss_pred CC-CeEEEEEeeCCCCCCCCcCChhhHH---HhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhH
Q psy5399 30 KG-KKVIIFGVPGAFTPGCSVTHLPGYL---AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFT 105 (156)
Q Consensus 30 ~g-k~vvl~f~~~~~cp~C~~~~l~~l~---~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~ 105 (156)
.| |+++|+|| ++||++|+.. .+.+. .+.+.+. .++. ++.|+.+....... |+-....+..++
T Consensus 12 ~~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~-~~~~-~~~i~~d~~~~~~~----------~~~~~~~~~~l~ 77 (125)
T cd02951 12 DGKKPLLLLFS-QPGCPYCDKL-KRDYLNDPAVQAYIR-AHFV-VVYINIDGDKEVTD----------FDGEALSEKELA 77 (125)
T ss_pred cCCCcEEEEEe-CCCCHHHHHH-HHHhcCcHHHHHHHH-hheE-EEEEEccCCceeec----------cCCCCccHHHHH
Confidence 46 77888776 9999999954 56664 4444554 3566 77887764332222 111122456889
Q ss_pred HhhCCeeeccCCCcceeeeEEEEEe-C-CcEEEEEEccCC
Q psy5399 106 KKLGVEHEIPVLGGWRSKRYSMVVD-D-GKITQLNIEPDG 143 (156)
Q Consensus 106 ~~~gv~~~~~~~~~~~~~~~~~iid-~-G~I~~~~~~~~~ 143 (156)
.+|++. ..|++++++ + |+++....+..+
T Consensus 78 ~~~~v~----------~~Pt~~~~~~~gg~~~~~~~G~~~ 107 (125)
T cd02951 78 RKYRVR----------FTPTVIFLDPEGGKEIARLPGYLP 107 (125)
T ss_pred HHcCCc----------cccEEEEEcCCCCceeEEecCCCC
Confidence 999984 255588888 7 899988776443
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.90 E-value=6e-09 Score=68.26 Aligned_cols=75 Identities=7% Similarity=0.112 Sum_probs=52.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.+++++|+|| ++||++|+.. +|.|.++++++.+..+. ++.+..|. ..++++|+
T Consensus 16 ~~~~vvv~F~-a~wC~~Ck~~-~p~l~~~~~~~~~~~~~-~~~vd~d~------------------------~~~~~~~~ 68 (102)
T cd02948 16 NKGLTVVDVY-QEWCGPCKAV-VSLFKKIKNELGDDLLH-FATAEADT------------------------IDTLKRYR 68 (102)
T ss_pred cCCeEEEEEE-CCcCHhHHHH-hHHHHHHHHHcCCCcEE-EEEEeCCC------------------------HHHHHHcC
Confidence 4678888887 9999999964 79999998887643344 45454441 23568888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
+.. .|+.+++++|+++....+.
T Consensus 69 v~~----------~Pt~~~~~~g~~~~~~~G~ 90 (102)
T cd02948 69 GKC----------EPTFLFYKNGELVAVIRGA 90 (102)
T ss_pred CCc----------CcEEEEEECCEEEEEEecC
Confidence 742 3435566799988887764
No 71
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.90 E-value=2.8e-09 Score=68.71 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=53.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
++++++|+|| ++||+.|+.. .|.+.++++.+.+ .+. ++.|..+ ....++++|+
T Consensus 11 ~~~~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~l~~~~~ 63 (96)
T cd02956 11 TQVPVVVDFW-APRSPPSKEL-LPLLERLAEEYQG-QFV-LAKVNCD-----------------------AQPQIAQQFG 63 (96)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhCC-cEE-EEEEecc-----------------------CCHHHHHHcC
Confidence 4678888887 9999999964 7999999988853 233 4455433 3456788888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
+. ..|+++++++|+++....+.
T Consensus 64 i~----------~~Pt~~~~~~g~~~~~~~g~ 85 (96)
T cd02956 64 VQ----------ALPTVYLFAAGQPVDGFQGA 85 (96)
T ss_pred CC----------CCCEEEEEeCCEEeeeecCC
Confidence 84 24457888999988765553
No 72
>KOG1651|consensus
Probab=98.86 E-value=3.5e-08 Score=69.12 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=93.5
Q ss_pred cCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--------CHH
Q psy5399 8 TLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN--------DAF 79 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d--------~~~ 79 (156)
.+=+|+.. +.+|+.++|+. ++||.++|+-. |+-|..-..+ -.+|..++++|+++|+. |++.-.+ +.+
T Consensus 13 siydf~~~-d~~G~~v~l~~-yrGkV~LiVNV-AS~Cg~T~~~-Y~~l~~L~~ky~~~Gl~-ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 13 SIYDFSAK-DLDGEYVSLSQ-YRGKVVLIVNV-ASQCGLTESQ-YTELNELYEKYKDQGLE-ILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred ceeeeEEe-cCCCCCccHHH-hCCeEEEEEEc-ccccccchhc-chhHHHHHHHHhhCCeE-EEEeccccccCcCCCCcH
Confidence 45578888 79999999999 79997777776 8889988844 58999999999999999 9998543 345
Q ss_pred HHHHHH-HHcCCCcceEEEe--cCCc----hhHHhhCCeeeccCCC-cceeeeEEEEEe-CCcEEEEEEccCCCceeecc
Q psy5399 80 VMEAWC-RKNNAEGKIRFLA--DPNL----EFTKKLGVEHEIPVLG-GWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSL 150 (156)
Q Consensus 80 ~~~~~~-~~~~~~~~f~~~~--D~~~----~~~~~~gv~~~~~~~~-~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~ 150 (156)
++..++ .+++.. ||++. |.++ .+.+-+.-.. ...+| ...+--.=|++| +|+|+..+...-....-..+
T Consensus 88 Ei~~f~~~r~~~~--f~if~KidVNG~~~~PlykfLK~~~-~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~d 164 (171)
T KOG1651|consen 88 EILNFVKVRYGAE--FPIFQKIDVNGDNADPLYKFLKKVK-GGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKD 164 (171)
T ss_pred HHHHHHHhccCCC--CccEeEEecCCCCCchHHHHHhhcC-CCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchh
Confidence 555555 566766 88774 3222 2222111110 01111 112223368998 99999998755444455556
Q ss_pred hhhhh
Q psy5399 151 VDELK 155 (156)
Q Consensus 151 ~~~~l 155 (156)
++.+|
T Consensus 165 Ie~lL 169 (171)
T KOG1651|consen 165 IEKLL 169 (171)
T ss_pred HHHHh
Confidence 66665
No 73
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.83 E-value=1.4e-08 Score=67.83 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=54.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
++++||.|| ++||++|+.. .|.|.++.+++.+. +. ++-|..| ....++.+||+
T Consensus 14 ~~~vVV~F~-A~WCgpCk~m-~P~le~la~~~~~~-v~-f~kVDvD-----------------------~~~~la~~~~V 66 (114)
T cd02954 14 EKVVVIRFG-RDWDPVCMQM-DEVLAKIAEDVSNF-AV-IYLVDID-----------------------EVPDFNKMYEL 66 (114)
T ss_pred CCEEEEEEE-CCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEECC-----------------------CCHHHHHHcCC
Confidence 567777777 9999999964 59999999888622 33 4444433 44578888888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEccCC
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~ 143 (156)
.. .|+.+++.+|+++....+..+
T Consensus 67 ~~----------iPTf~~fk~G~~v~~~~G~~~ 89 (114)
T cd02954 67 YD----------PPTVMFFFRNKHMKIDLGTGN 89 (114)
T ss_pred CC----------CCEEEEEECCEEEEEEcCCCC
Confidence 42 444777789999999876544
No 74
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.82 E-value=7.2e-08 Score=64.44 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=69.8
Q ss_pred HHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeec--------------------
Q psy5399 55 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI-------------------- 114 (156)
Q Consensus 55 l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~-------------------- 114 (156)
|.+..+++++.|+. +++|+.++++..++|++..+++ |++++|++..+++++|+....
T Consensus 2 L~~~~~~l~~~gv~-lv~I~~g~~~~~~~f~~~~~~p--~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGVK-LVVIGCGSPEGIEKFCELTGFP--FPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSA 78 (115)
T ss_pred hhHhHHHHHHcCCe-EEEEEcCCHHHHHHHHhccCCC--CcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHH
Confidence 56778889999999 9999999997799999999999 999999999999999988622
Q ss_pred ------c-C-CCcceeeeEEEEEe-CCcEEEEEEcc
Q psy5399 115 ------P-V-LGGWRSKRYSMVVD-DGKITQLNIEP 141 (156)
Q Consensus 115 ------~-~-~~~~~~~~~~~iid-~G~I~~~~~~~ 141 (156)
. . .|.......+||+| +|+|+|.+...
T Consensus 79 ~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~~ 114 (115)
T PF13911_consen 79 KNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRDR 114 (115)
T ss_pred HHcCCCCcccCCCceecCeEEEEcCCCeEEEEEecC
Confidence 0 1 23344566789998 89999998753
No 75
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.78 E-value=2.5e-08 Score=66.03 Aligned_cols=80 Identities=15% Similarity=0.244 Sum_probs=66.8
Q ss_pred cceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC--------CHHHHH
Q psy5399 11 DALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVME 82 (156)
Q Consensus 11 ~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d--------~~~~~~ 82 (156)
+|++. +.+|++++|++ ++||+++|+-. ++-|..-. + ...|++++++|.++|+. |+++-.+ +.++++
T Consensus 3 df~~~-~~~G~~v~l~~-y~Gkv~LIVNv-As~Cg~t~-q-y~~L~~L~~ky~~~gl~-ILaFPcnqFg~QEp~~~~ei~ 76 (108)
T PF00255_consen 3 DFSAK-DIDGKPVSLSK-YKGKVLLIVNV-ASKCGYTK-Q-YKQLNELYEKYKDKGLE-ILAFPCNQFGNQEPGSNEEIK 76 (108)
T ss_dssp GSEEE-BTTSSEEEGGG-GTTSEEEEEEE-ESSSTTHH-H-HHHHHHHHHHHGGGTEE-EEEEEBSTTTTTTSSCHHHHH
T ss_pred ceeee-CCCCCEECHHH-cCCCEEEEEec-ccccCCcc-c-cHHHHHHHHHHhcCCeE-EEeeehHHhccccCCCHHHHH
Confidence 57888 79999999999 79998777776 78898877 4 79999999999999999 9998553 567888
Q ss_pred HHHHH-cCCCcceEEEe
Q psy5399 83 AWCRK-NNAEGKIRFLA 98 (156)
Q Consensus 83 ~~~~~-~~~~~~f~~~~ 98 (156)
+++.. ++.+ ||+..
T Consensus 77 ~~~~~~~~~~--F~vf~ 91 (108)
T PF00255_consen 77 EFCKEKFGVT--FPVFE 91 (108)
T ss_dssp HHHCHCHT-S--SEEBS
T ss_pred HHHHhccCCc--ccceE
Confidence 88888 5777 98874
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.77 E-value=1.7e-08 Score=65.67 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=47.8
Q ss_pred hHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 27 DAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 27 ~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
+..+|+ ++|.|| ++||++|.. ..|.+.++++.++..++. +..+. .|.+..+++
T Consensus 13 ~~~~~~-~lv~f~-a~wC~~C~~-~~p~~~~l~~~~~~~~v~-~~~vd-----------------------~~~~~~~~~ 65 (101)
T cd02994 13 LVLEGE-WMIEFY-APWCPACQQ-LQPEWEEFADWSDDLGIN-VAKVD-----------------------VTQEPGLSG 65 (101)
T ss_pred HHhCCC-EEEEEE-CCCCHHHHH-HhHHHHHHHHhhccCCeE-EEEEE-----------------------ccCCHhHHH
Confidence 345666 567776 999999996 479999999876544444 44443 233345778
Q ss_pred hhCCeeeccCCCcceeeeEEEEEeCCcE
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVDDGKI 134 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid~G~I 134 (156)
+|++. ..|+++++.+|++
T Consensus 66 ~~~i~----------~~Pt~~~~~~g~~ 83 (101)
T cd02994 66 RFFVT----------ALPTIYHAKDGVF 83 (101)
T ss_pred HcCCc----------ccCEEEEeCCCCE
Confidence 88884 2444677678885
No 77
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.76 E-value=5.6e-10 Score=73.96 Aligned_cols=94 Identities=18% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHH--HHcCCCEEEEEecCCHH-HHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL--KAKGIHEIFCIAVNDAF-VMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~--~~~~~~~v~~is~d~~~-~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
+|++++++|+ ..|||+|+.. -+.+.+..+-- -..++. ++.++.++.. ...++.+..+.. ++... ...+++
T Consensus 4 ~~k~~v~~F~-~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~l~~ 76 (112)
T PF13098_consen 4 NGKPIVVVFT-DPWCPYCKKL-EKELFPDNDVARYLKDDFQ-VIFVNIDDSRDESEAVLDFDGQK--NVRLS--NKELAQ 76 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHH-HHHHHHHHHHHCEEHCECE-EEECESHSHHHHHHHHHSHTCHS--SCHHH--HHHHHH
T ss_pred CCCEEEEEEE-CCCCHHHHHH-HHHHHHHHHHHHHhhcCeE-EEEEecCCcccccccccccccch--hhhHH--HHHHHH
Confidence 5788888887 9999999953 36666433311 122466 7888876554 344555554432 22222 347999
Q ss_pred hhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEc
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 140 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~ 140 (156)
.||+.. +|+++++| +|++++...+
T Consensus 77 ~~~v~g----------tPt~~~~d~~G~~v~~~~G 101 (112)
T PF13098_consen 77 RYGVNG----------TPTIVFLDKDGKIVYRIPG 101 (112)
T ss_dssp HTT--S----------SSEEEECTTTSCEEEEEES
T ss_pred HcCCCc----------cCEEEEEcCCCCEEEEecC
Confidence 999852 44578888 9999987665
No 78
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=1.1e-07 Score=69.30 Aligned_cols=92 Identities=17% Similarity=0.357 Sum_probs=74.3
Q ss_pred CCCceeehhhHhCCCe-EEEE-EeeCC-C---CCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 18 TPQTKIQIADAIKGKK-VIIF-GVPGA-F---TPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 18 ~~g~~~~l~~~~~gk~-vvl~-f~~~~-~---cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
...+..+|+|+|.|+- +||+ |..+. | ||.|..- +-.+.-....++..++. +++||..+.+++..+.+..|+.
T Consensus 59 ~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~l-aD~~dGa~~HL~~~dv~-lv~VsRAPl~~l~~~k~rmGW~ 136 (247)
T COG4312 59 TENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFL-ADHWDGAVAHLEHHDVT-LVAVSRAPLEELVAYKRRMGWQ 136 (247)
T ss_pred cCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhH-HhhhhhhhhhHhhcCce-EEEEecCcHHHHHHHHHhcCCc
Confidence 4555899999999986 4444 32233 3 8999853 46666677777888898 9999999999999999999999
Q ss_pred cceEEEecCCchhHHhhCCeee
Q psy5399 92 GKIRFLADPNLEFTKKLGVEHE 113 (156)
Q Consensus 92 ~~f~~~~D~~~~~~~~~gv~~~ 113 (156)
||++++.++.|.+.|+++..
T Consensus 137 --f~w~Ss~~s~Fn~Df~vsf~ 156 (247)
T COG4312 137 --FPWVSSTDSDFNRDFQVSFT 156 (247)
T ss_pred --ceeEeccCcccccccccccc
Confidence 99999999999999988653
No 79
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.72 E-value=4.4e-08 Score=63.54 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH--cCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhh
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA--KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~--~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~ 108 (156)
.++++|.|| ++||+.|+.. +|.+.+++++++. ..+. ++.|.. |.+..++++|
T Consensus 16 ~~~~lv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~~~-~~~vd~-----------------------~~~~~~~~~~ 69 (102)
T cd03005 16 EGNHFVKFF-APWCGHCKRL-APTWEQLAKKFNNENPSVK-IAKVDC-----------------------TQHRELCSEF 69 (102)
T ss_pred cCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhccCCcEE-EEEEEC-----------------------CCChhhHhhc
Confidence 345777777 9999999964 7999999999875 2333 444432 2334677888
Q ss_pred CCeeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 109 GVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 109 gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
++. ..|+++++.+|+.+..+.+.
T Consensus 70 ~v~----------~~Pt~~~~~~g~~~~~~~G~ 92 (102)
T cd03005 70 QVR----------GYPTLLLFKDGEKVDKYKGT 92 (102)
T ss_pred CCC----------cCCEEEEEeCCCeeeEeeCC
Confidence 874 24447777888877666553
No 80
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.70 E-value=4.2e-08 Score=64.31 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=28.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGI 67 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~ 67 (156)
++++++|.|| ++|||+|+.. +|.+.++++++++.+.
T Consensus 14 ~~~~vlv~f~-a~wC~~C~~~-~p~l~~l~~~~~~~~~ 49 (104)
T cd03000 14 KEDIWLVDFY-APWCGHCKKL-EPVWNEVGAELKSSGS 49 (104)
T ss_pred cCCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHHHhcCC
Confidence 4566666666 9999999965 7999999999976543
No 81
>PTZ00051 thioredoxin; Provisional
Probab=98.70 E-value=8.1e-08 Score=61.99 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=51.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|+|| ++||+.|+.. .+.+.++++++. ++. ++.+..+ ....++++|++
T Consensus 18 ~~~vli~f~-~~~C~~C~~~-~~~l~~l~~~~~--~~~-~~~vd~~-----------------------~~~~~~~~~~v 69 (98)
T PTZ00051 18 NELVIVDFY-AEWCGPCKRI-APFYEECSKEYT--KMV-FVKVDVD-----------------------ELSEVAEKENI 69 (98)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHcC--CcE-EEEEECc-----------------------chHHHHHHCCC
Confidence 456777776 9999999964 688988887654 344 5555432 23568888888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
.. .|+++++.+|+++....+..
T Consensus 70 ~~----------~Pt~~~~~~g~~~~~~~G~~ 91 (98)
T PTZ00051 70 TS----------MPTFKVFKNGSVVDTLLGAN 91 (98)
T ss_pred ce----------eeEEEEEeCCeEEEEEeCCC
Confidence 42 44456667999998887743
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.70 E-value=9e-08 Score=61.97 Aligned_cols=74 Identities=9% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|+|| ++||+.|.. ..+.+.++++++.+ ++. ++.+..+ .+..++.++++
T Consensus 13 ~~~vlv~f~-a~~C~~C~~-~~~~l~~l~~~~~~-~v~-~~~id~d-----------------------~~~~l~~~~~v 65 (97)
T cd02949 13 DRLILVLYT-SPTCGPCRT-LKPILNKVIDEFDG-AVH-FVEIDID-----------------------EDQEIAEAAGI 65 (97)
T ss_pred CCeEEEEEE-CCCChhHHH-HHHHHHHHHHHhCC-ceE-EEEEECC-----------------------CCHHHHHHCCC
Confidence 455666666 999999996 47999998888753 344 5544443 23357778887
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
. ..|+.+++++|+++....+.
T Consensus 66 ~----------~vPt~~i~~~g~~v~~~~g~ 86 (97)
T cd02949 66 M----------GTPTVQFFKDKELVKEISGV 86 (97)
T ss_pred e----------eccEEEEEECCeEEEEEeCC
Confidence 4 24557888889888776653
No 83
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.69 E-value=1.4e-07 Score=63.92 Aligned_cols=90 Identities=11% Similarity=0.090 Sum_probs=56.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH--------HHHHHHHHHcCCCcceEEEecCCc
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA--------FVMEAWCRKNNAEGKIRFLADPNL 102 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~--------~~~~~~~~~~~~~~~f~~~~D~~~ 102 (156)
|+.++|+|+ ++|||+|+.. .|.|.++.++ .+.. ++-|..|.. +++.++.++++..
T Consensus 23 ~~~~iv~f~-~~~Cp~C~~~-~P~l~~~~~~---~~~~-~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~----------- 85 (122)
T TIGR01295 23 KETATFFIG-RKTCPYCRKF-SGTLSGVVAQ---TKAP-IYYIDSENNGSFEMSSLNDLTAFRSRFGIP----------- 85 (122)
T ss_pred CCcEEEEEE-CCCChhHHHH-hHHHHHHHHh---cCCc-EEEEECCCccCcCcccHHHHHHHHHHcCCc-----------
Confidence 455677766 9999999965 6999999877 3466 888888722 1233333333322
Q ss_pred hhHHhhCCeeeccCCCcceeeeEEEEEeCCcEEEEEEccCCCceeecchhhhh
Q psy5399 103 EFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 103 ~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
+++ ...|+.+++.+|+++...++... +.++++.++
T Consensus 86 -----~~i----------~~~PT~v~~k~Gk~v~~~~G~~~---~~~~l~~~~ 120 (122)
T TIGR01295 86 -----TSF----------MGTPTFVHITDGKQVSVRCGSST---TAQELQDIA 120 (122)
T ss_pred -----ccC----------CCCCEEEEEeCCeEEEEEeCCCC---CHHHHHHHh
Confidence 112 12444777799999998877533 244555443
No 84
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.69 E-value=6.6e-08 Score=67.91 Aligned_cols=80 Identities=10% Similarity=0.072 Sum_probs=52.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|| ++||++|+. ..|.+.++++++.+.++. ++.|..+.. ..++++|++
T Consensus 47 ~~~vvV~Fy-a~wC~~Ck~-l~p~l~~la~~~~~~~v~-f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 47 RVTWLVEFF-TTWSPECVN-FAPVFAELSLKYNNNNLK-FGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCEEEEEEE-CCCCHHHHH-HHHHHHHHHHHcccCCeE-EEEEECCCC-----------------------HHHHHHcCc
Confidence 456777777 999999996 479999999998655666 777776532 234444454
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
.... + ....|+++++++|+.+....+
T Consensus 101 ~~~~---~-v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 101 STSP---L-SKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred eecC---C-cCCCCEEEEEECCEEEEEEec
Confidence 2100 0 011344666789988887765
No 85
>KOG0910|consensus
Probab=98.67 E-value=6.9e-08 Score=66.88 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=63.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.++||+|.|| +.||.+|..- .|.|+++..+|.. .+. ++-| =.|....++.+|+
T Consensus 60 S~~PVlVdF~-A~WCgPCk~l-~P~l~~~~~~~~g-~~k-~~kv-----------------------dtD~~~ela~~Y~ 112 (150)
T KOG0910|consen 60 SDVPVLVDFH-AEWCGPCKML-GPILEELVSEYAG-KFK-LYKV-----------------------DTDEHPELAEDYE 112 (150)
T ss_pred cCCCEEEEEe-cCcCccHhHh-hHHHHHHHHhhcC-eEE-EEEE-----------------------ccccccchHhhcc
Confidence 3678999998 9999999975 6999999999842 233 3322 2456678999999
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccCCCceeecchhhhh
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDELK 155 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~~~~~~~~~~~~l 155 (156)
|. +.|+++++++|..+...++-.+.....+.++.+|
T Consensus 113 I~----------avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 113 IS----------AVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ee----------eeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 95 3555888899999987776555444444444433
No 86
>PHA02278 thioredoxin-like protein
Probab=98.67 E-value=1.3e-07 Score=62.22 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=55.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
++++++|.|| ++||++|+.. .|.+.++.+++. ..+. ++-|..|... .| ...++++|+
T Consensus 13 ~~~~vvV~F~-A~WCgpCk~m-~p~l~~l~~~~~-~~~~-~~~vdvd~~~------------------~d-~~~l~~~~~ 69 (103)
T PHA02278 13 QKKDVIVMIT-QDNCGKCEIL-KSVIPMFQESGD-IKKP-ILTLNLDAED------------------VD-REKAVKLFD 69 (103)
T ss_pred CCCcEEEEEE-CCCCHHHHhH-HHHHHHHHhhhc-CCce-EEEEECCccc------------------cc-cHHHHHHCC
Confidence 4677888887 9999999976 589999887643 2244 6666655211 01 245888888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
+. ..|+.+++++|+++....+..
T Consensus 70 I~----------~iPT~i~fk~G~~v~~~~G~~ 92 (103)
T PHA02278 70 IM----------STPVLIGYKDGQLVKKYEDQV 92 (103)
T ss_pred Cc----------cccEEEEEECCEEEEEEeCCC
Confidence 84 244467778999998877743
No 87
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.66 E-value=1.2e-07 Score=61.58 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcC-CCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhh
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKG-IHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~ 108 (156)
++++++|.|| ++||++|+.. .|.+.++.+.+.+.+ +. ++.+..+. |....+.++|
T Consensus 16 ~~~~~~v~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~---------------------~~~~~~~~~~ 71 (104)
T cd02997 16 KEKHVLVMFY-APWCGHCKKM-KPEFTKAATELKEDGKGV-LAAVDCTK---------------------PEHDALKEEY 71 (104)
T ss_pred hCCCEEEEEE-CCCCHHHHHh-CHHHHHHHHHHhhCCceE-EEEEECCC---------------------CccHHHHHhC
Confidence 4567777777 9999999964 699999999887532 22 33343331 1245677888
Q ss_pred CCeeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 109 GVEHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 109 gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
|+. ..|+.+++++|+++....+
T Consensus 72 ~i~----------~~Pt~~~~~~g~~~~~~~g 93 (104)
T cd02997 72 NVK----------GFPTFKYFENGKFVEKYEG 93 (104)
T ss_pred CCc----------cccEEEEEeCCCeeEEeCC
Confidence 884 2444566678887765544
No 88
>KOG2792|consensus
Probab=98.66 E-value=7.4e-08 Score=71.95 Aligned_cols=123 Identities=17% Similarity=0.183 Sum_probs=88.9
Q ss_pred CcceecccCCCceeehhhHhCCCeEEEEEeeCCCCC-CCCcCChhhHHHhHHHHHHc-CCCEE--EEEecC----CHHHH
Q psy5399 10 PDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTP-GCSVTHLPGYLAKEKDLKAK-GIHEI--FCIAVN----DAFVM 81 (156)
Q Consensus 10 P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp-~C~~~~l~~l~~~~~~~~~~-~~~~v--~~is~d----~~~~~ 81 (156)
-.|+|. +.+|+.++-.| |.|||++|+|= .+.|| .|.. ||-.+.+..+++.+. |+. + ++||.| +++.+
T Consensus 120 GpF~L~-d~~Gk~~te~d-f~Gkw~LiYFG-FThCPDICPd-ELeKm~~~Vd~i~~~~~~~-~~PlFIsvDPeRD~~~~~ 194 (280)
T KOG2792|consen 120 GPFSLV-DHDGKRVTEKD-FLGKWSLIYFG-FTHCPDICPD-ELEKMSAVVDEIEAKPGLP-PVPLFISVDPERDSVEVV 194 (280)
T ss_pred CceEEE-ecCCCeecccc-cccceEEEEec-ccCCCCcChH-HHHHHHHHHHHHhccCCCC-ccceEEEeCcccCCHHHH
Confidence 379999 79999999999 89999999986 56677 7994 699999999988754 333 2 677775 68999
Q ss_pred HHHHHHcCCCc-ceEEEecCCchhHHhhCCeeec-cCC-C----cceeeeEEEEEe-CCcEEEEE
Q psy5399 82 EAWCRKNNAEG-KIRFLADPNLEFTKKLGVEHEI-PVL-G----GWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 82 ~~~~~~~~~~~-~f~~~~D~~~~~~~~~gv~~~~-~~~-~----~~~~~~~~~iid-~G~I~~~~ 138 (156)
++|++++.... .++=-.+.=.+++++|.|+... +.. + +.+ .-.+++|| +|+.+..+
T Consensus 195 ~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDH-Si~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 195 AEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDH-SIFMYLIDPEGEFVDYY 258 (280)
T ss_pred HHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeee-eEEEEEECCCcceehhh
Confidence 99999997652 1211122226899999999865 111 1 223 23468888 99987654
No 89
>KOG0907|consensus
Probab=98.66 E-value=1.9e-07 Score=61.68 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=56.0
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
++.+|+.|+ ++||++|+.-+ |.+.++..+|.+ +. ++.|..|. ...+++.|++
T Consensus 21 ~kliVvdF~-a~wCgPCk~i~-P~~~~La~~y~~--v~-Flkvdvde-----------------------~~~~~~~~~V 72 (106)
T KOG0907|consen 21 DKLVVVDFY-ATWCGPCKAIA-PKFEKLAEKYPD--VV-FLKVDVDE-----------------------LEEVAKEFNV 72 (106)
T ss_pred CCeEEEEEE-CCCCcchhhhh-hHHHHHHHHCCC--CE-EEEEeccc-----------------------CHhHHHhcCc
Confidence 466666665 99999999775 999999999984 66 77777773 2457788888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEccCC
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~ 143 (156)
.. .|+.+++++|+.+-..++.+.
T Consensus 73 ~~----------~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 73 KA----------MPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred eE----------eeEEEEEECCEEEEEEecCCH
Confidence 43 444666688888888777554
No 90
>PRK10996 thioredoxin 2; Provisional
Probab=98.64 E-value=5.3e-08 Score=67.40 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.+++++|+|| ++||+.|+.. .+.|.++++++.+ ++. ++.+..+ .+..++++|+
T Consensus 51 ~~k~vvv~F~-a~wC~~C~~~-~~~l~~l~~~~~~-~v~-~~~vd~~-----------------------~~~~l~~~~~ 103 (139)
T PRK10996 51 DDLPVVIDFW-APWCGPCRNF-APIFEDVAAERSG-KVR-FVKVNTE-----------------------AERELSARFR 103 (139)
T ss_pred CCCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhCC-CeE-EEEEeCC-----------------------CCHHHHHhcC
Confidence 3667777777 9999999964 6999998887653 344 4444332 3456888898
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
+.. .|+++++++|+++....+..
T Consensus 104 V~~----------~Ptlii~~~G~~v~~~~G~~ 126 (139)
T PRK10996 104 IRS----------IPTIMIFKNGQVVDMLNGAV 126 (139)
T ss_pred CCc----------cCEEEEEECCEEEEEEcCCC
Confidence 842 44466668999988776643
No 91
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.62 E-value=7e-08 Score=62.83 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=32.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
++++++|.|| ++||++|+. ..|.+.+++++++. .+. +..|+.+
T Consensus 17 ~~~~~~v~f~-a~wC~~C~~-~~p~~~~~a~~~~~-~~~-~~~vd~~ 59 (101)
T cd03003 17 SGEIWFVNFY-SPRCSHCHD-LAPTWREFAKEMDG-VIR-IGAVNCG 59 (101)
T ss_pred CCCeEEEEEE-CCCChHHHH-hHHHHHHHHHHhcC-ceE-EEEEeCC
Confidence 4567777777 999999995 47999999999863 244 6666654
No 92
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.60 E-value=1.1e-07 Score=62.41 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=48.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.+++++|.|| ++||++|+.. .|.+.++++++.. .+. ++.++.+.. .+..++++|+
T Consensus 17 ~~~~~lv~f~-a~wC~~C~~~-~~~~~~~a~~~~~-~~~-~~~v~~~~~---------------------~~~~~~~~~~ 71 (109)
T cd03002 17 TNYTTLVEFY-APWCGHCKNL-KPEYAKAAKELDG-LVQ-VAAVDCDED---------------------KNKPLCGKYG 71 (109)
T ss_pred CCCeEEEEEE-CCCCHHHHhh-ChHHHHHHHHhcC-Cce-EEEEecCcc---------------------ccHHHHHHcC
Confidence 3666888877 9999999964 6999999988863 355 777777631 1346777888
Q ss_pred CeeeccCCCcceeeeEEEEEeCC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDG 132 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G 132 (156)
+. ..|+++++++|
T Consensus 72 i~----------~~Pt~~~~~~~ 84 (109)
T cd03002 72 VQ----------GFPTLKVFRPP 84 (109)
T ss_pred CC----------cCCEEEEEeCC
Confidence 74 24447777744
No 93
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.59 E-value=2.1e-07 Score=59.84 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|+|| ++||+.|+.. .+.|.++.+++ ...+. ++.+..+ ....++++|++
T Consensus 14 ~~~v~v~f~-~~~C~~C~~~-~~~l~~l~~~~-~~~i~-~~~vd~~-----------------------~~~~~~~~~~i 66 (97)
T cd02984 14 SKLLVLHFW-APWAEPCKQM-NQVFEELAKEA-FPSVL-FLSIEAE-----------------------ELPEISEKFEI 66 (97)
T ss_pred CCEEEEEEE-CCCCHHHHHH-hHHHHHHHHHh-CCceE-EEEEccc-----------------------cCHHHHHhcCC
Confidence 467777777 9999999954 68898888886 22333 4444321 23467788888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
.. .|+++++++|+++....+.
T Consensus 67 ~~----------~Pt~~~~~~g~~~~~~~g~ 87 (97)
T cd02984 67 TA----------VPTFVFFRNGTIVDRVSGA 87 (97)
T ss_pred cc----------ccEEEEEECCEEEEEEeCC
Confidence 42 4447777899988776664
No 94
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.59 E-value=1.5e-07 Score=63.50 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=45.6
Q ss_pred CCCeEEEEEeeC-------CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCc
Q psy5399 30 KGKKVIIFGVPG-------AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 102 (156)
Q Consensus 30 ~gk~vvl~f~~~-------~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~ 102 (156)
+|++++|.|| + +||+.|+.. .|.+.++.++++. ++. ++-|..+.. +...|++.
T Consensus 20 ~~~~vvV~F~-A~~~~~~~~WC~pCr~~-~P~l~~l~~~~~~-~v~-fv~Vdvd~~----------------~~w~d~~~ 79 (119)
T cd02952 20 EGKPIFILFY-GDKDPDGQSWCPDCVKA-EPVVREALKAAPE-DCV-FIYCDVGDR----------------PYWRDPNN 79 (119)
T ss_pred CCCeEEEEEE-ccCCCCCCCCCHhHHhh-chhHHHHHHHCCC-CCE-EEEEEcCCc----------------ccccCcch
Confidence 4788999988 7 999999975 5999999988862 466 777777632 23345556
Q ss_pred hhHHhhCCe
Q psy5399 103 EFTKKLGVE 111 (156)
Q Consensus 103 ~~~~~~gv~ 111 (156)
.++..|++.
T Consensus 80 ~~~~~~~I~ 88 (119)
T cd02952 80 PFRTDPKLT 88 (119)
T ss_pred hhHhccCcc
Confidence 777777773
No 95
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.51 E-value=4.1e-07 Score=59.37 Aligned_cols=73 Identities=7% Similarity=0.053 Sum_probs=49.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|| ++||+.|+.. .|.+.++.+++.. .+. +..|..+ ....++++||+
T Consensus 19 ~~~v~v~f~-a~wC~~C~~~-~p~~~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~~~~~~~i 71 (104)
T cd03004 19 KEPWLVDFY-APWCGPCQAL-LPELRKAARALKG-KVK-VGSVDCQ-----------------------KYESLCQQANI 71 (104)
T ss_pred CCeEEEEEE-CCCCHHHHHH-HHHHHHHHHHhcC-CcE-EEEEECC-----------------------chHHHHHHcCC
Confidence 557777777 9999999964 7999999998842 344 5555443 33467777877
Q ss_pred eeeccCCCcceeeeEEEEEeCC-cEEEEEEc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDG-KITQLNIE 140 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G-~I~~~~~~ 140 (156)
. ..|+.+++++| +.+..+.+
T Consensus 72 ~----------~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 72 R----------AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred C----------cccEEEEEcCCCCCceEccC
Confidence 4 24447777744 76666555
No 96
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.51 E-value=3.2e-07 Score=58.98 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=50.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|+|| ++||+.|+.. .+.+.++.+++.. .+. ++.+..+ .+..+.++||+
T Consensus 14 ~~~vvi~f~-~~~C~~C~~~-~~~l~~~~~~~~~-~~~-~~~vd~~-----------------------~~~~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFW-APWCGPCKMI-APILEELAKEYEG-KVK-FVKLNVD-----------------------ENPDIAAKYGI 66 (101)
T ss_pred CCcEEEEEE-CCCCHHHHHh-CHHHHHHHHHhcC-CeE-EEEEECC-----------------------CCHHHHHHcCC
Confidence 456777777 9999999964 6999999888753 355 6655533 23456677888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
. ..|+++++++|++.....+.
T Consensus 67 ~----------~~P~~~~~~~g~~~~~~~g~ 87 (101)
T TIGR01068 67 R----------SIPTLLLFKNGKEVDRSVGA 87 (101)
T ss_pred C----------cCCEEEEEeCCcEeeeecCC
Confidence 4 24457777888877665543
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.49 E-value=2.5e-07 Score=59.73 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=48.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
++++++|.|| ++||+.|+.. .+.+.++++.++..+ . +..+..| .|.+..+.++|+
T Consensus 12 ~~~~~~i~f~-~~~C~~c~~~-~~~~~~~~~~~~~~~-~-~~~~~~d---------------------~~~~~~~~~~~~ 66 (102)
T TIGR01126 12 SNKDVLVEFY-APWCGHCKNL-APEYEKLAKELKGDP-D-IVLAKVD---------------------ATAEKDLASRFG 66 (102)
T ss_pred cCCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhccCC-c-eEEEEEE---------------------ccchHHHHHhCC
Confidence 5677888887 9999999964 699999888886443 2 3323322 223456778888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
+. ..|+++++++|.....+.+
T Consensus 67 i~----------~~P~~~~~~~~~~~~~~~g 87 (102)
T TIGR01126 67 VS----------GFPTIKFFPKGKKPVDYEG 87 (102)
T ss_pred CC----------cCCEEEEecCCCcceeecC
Confidence 74 2445788884443333333
No 98
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.48 E-value=6e-07 Score=59.79 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=33.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
++|.|||.|+ ++||++|... -|.|.++++++++. +. ++-|..|
T Consensus 13 ~~klVVVdF~-a~WC~pCk~m-dp~l~ela~~~~~~-~~-f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFG-RDEDAVCLQL-DDILSKTSHDLSKM-AS-IYLVDVD 55 (114)
T ss_pred CCCEEEEEEe-CCCChhHHHH-HHHHHHHHHHccCc-eE-EEEEecc
Confidence 4677777777 9999999964 39999999998632 55 6666666
No 99
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.47 E-value=6.9e-07 Score=58.85 Aligned_cols=73 Identities=7% Similarity=0.044 Sum_probs=47.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE-EEecCCchhHHhhC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLG 109 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~-~~~D~~~~~~~~~g 109 (156)
+++++|.|| ++||++|+.. .|.+.++++++++..-+ ...+. |. +=+|.+..++++||
T Consensus 18 ~~~vlv~F~-a~wC~~C~~~-~p~~~~~a~~~~~~~~~------------------~~~~~--~~~vd~d~~~~l~~~~~ 75 (108)
T cd02996 18 AELVLVNFY-ADWCRFSQML-HPIFEEAAAKIKEEFPD------------------AGKVV--WGKVDCDKESDIADRYR 75 (108)
T ss_pred CCEEEEEEE-CCCCHHHHhh-HHHHHHHHHHHhhccCC------------------CCcEE--EEEEECCCCHHHHHhCC
Confidence 456666666 9999999964 69999999888642100 00112 22 22455678889998
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEE
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKIT 135 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~ 135 (156)
+. ..|+.++..+|++.
T Consensus 76 v~----------~~Ptl~~~~~g~~~ 91 (108)
T cd02996 76 IN----------KYPTLKLFRNGMMM 91 (108)
T ss_pred CC----------cCCEEEEEeCCcCc
Confidence 84 24447777888854
No 100
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.45 E-value=9.3e-07 Score=59.03 Aligned_cols=74 Identities=9% Similarity=0.036 Sum_probs=51.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
.+++++|.|| ++||+.|+.. -|.+.++.++++ ++. ++-|..+ ....++++|+
T Consensus 21 ~~~~vvV~f~-a~~c~~C~~~-~p~l~~la~~~~--~i~-f~~Vd~~-----------------------~~~~l~~~~~ 72 (113)
T cd02989 21 SSERVVCHFY-HPEFFRCKIM-DKHLEILAKKHL--ETK-FIKVNAE-----------------------KAPFLVEKLN 72 (113)
T ss_pred CCCcEEEEEE-CCCCccHHHH-HHHHHHHHHHcC--CCE-EEEEEcc-----------------------cCHHHHHHCC
Confidence 3567777777 9999999965 588888888775 344 5444433 3345778888
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
+. ..|+.+++.+|+++...++.
T Consensus 73 v~----------~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 73 IK----------VLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred Cc----------cCCEEEEEECCEEEEEEECc
Confidence 84 24447777899998876544
No 101
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.43 E-value=2.3e-06 Score=53.51 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|+|+ +.||++|.. ..+.+.++.++ ..++. ++.++.+. +..+.+.|++
T Consensus 10 ~~~~ll~~~-~~~C~~C~~-~~~~~~~~~~~--~~~~~-~~~i~~~~-----------------------~~~~~~~~~v 61 (93)
T cd02947 10 AKPVVVDFW-APWCGPCKA-IAPVLEELAEE--YPKVK-FVKVDVDE-----------------------NPELAEEYGV 61 (93)
T ss_pred CCcEEEEEE-CCCChhHHH-hhHHHHHHHHH--CCCce-EEEEECCC-----------------------ChhHHHhcCc
Confidence 366777766 889999995 46888887766 34565 66666543 3456677777
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
.. .|+++++++|+++....+..
T Consensus 62 ~~----------~P~~~~~~~g~~~~~~~g~~ 83 (93)
T cd02947 62 RS----------IPTFLFFKNGKEVDRVVGAD 83 (93)
T ss_pred cc----------ccEEEEEECCEEEEEEecCC
Confidence 42 44477778888877776643
No 102
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.42 E-value=5.9e-07 Score=58.71 Aligned_cols=78 Identities=13% Similarity=0.036 Sum_probs=49.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhH---HHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGY---LAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
.|++++|.|| ++||++|... .+.+ .++.+.+.+ ++. ++.|..+..+. ....+++
T Consensus 10 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~~-~~~-~~~vd~~~~~~-------------------~~~~~~~ 66 (104)
T cd02953 10 QGKPVFVDFT-ADWCVTCKVN-EKVVFSDPEVQAALKK-DVV-LLRADWTKNDP-------------------EITALLK 66 (104)
T ss_pred cCCeEEEEEE-cchhHHHHHH-HHHhcCCHHHHHHHhC-CeE-EEEEecCCCCH-------------------HHHHHHH
Confidence 5778888887 9999999953 4555 456666654 555 66666542110 0135666
Q ss_pred hhCCeeeccCCCcceeeeEEEEEe--CCcEEEEEEc
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVD--DGKITQLNIE 140 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid--~G~I~~~~~~ 140 (156)
+|++. ..|++++++ +|+++....+
T Consensus 67 ~~~i~----------~~Pti~~~~~~~g~~~~~~~G 92 (104)
T cd02953 67 RFGVF----------GPPTYLFYGPGGEPEPLRLPG 92 (104)
T ss_pred HcCCC----------CCCEEEEECCCCCCCCccccc
Confidence 77773 244577776 7887766544
No 103
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.41 E-value=1.6e-06 Score=58.60 Aligned_cols=77 Identities=14% Similarity=0.096 Sum_probs=49.9
Q ss_pred CCCeEEEEEeeCCCCCC--CC--cCChhhHHHhHHHH-HHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchh
Q psy5399 30 KGKKVIIFGVPGAFTPG--CS--VTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 104 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~--C~--~~~l~~l~~~~~~~-~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~ 104 (156)
+.+.++|.||++.||++ |+ ..+ |.+.+.+.++ ++.++. ++-|. .|.+..+
T Consensus 25 ~~~~~vvv~f~a~wc~p~~Ck~~~~~-p~~~~~aa~~l~~~~v~-~~kVD-----------------------~d~~~~L 79 (120)
T cd03065 25 KYDVLCLLYHEPVESDKEAQKQFQME-ELVLELAAQVLEDKGIG-FGLVD-----------------------SKKDAKV 79 (120)
T ss_pred hCCceEEEEECCCcCChhhChhhcch-hhHHHHHHHHhhcCCCE-EEEEe-----------------------CCCCHHH
Confidence 34446666677999987 98 443 6777777665 233444 44333 4456789
Q ss_pred HHhhCCeeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 105 TKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 105 ~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
+++|||. ..|+.+++.+|+++. +.+..
T Consensus 80 a~~~~I~----------~iPTl~lfk~G~~v~-~~G~~ 106 (120)
T cd03065 80 AKKLGLD----------EEDSIYVFKDDEVIE-YDGEF 106 (120)
T ss_pred HHHcCCc----------cccEEEEEECCEEEE-eeCCC
Confidence 9999994 244477779999876 55543
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.38 E-value=1.5e-06 Score=57.85 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=48.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|| ++||+.|+.. .|.+.++++++. ++. ++-|..+ .. .++++|++
T Consensus 24 ~~~vvv~F~-a~~c~~C~~l-~~~l~~la~~~~--~v~-f~~vd~~-----------------------~~-~l~~~~~i 74 (113)
T cd02957 24 GTRVVVHFY-EPGFPRCKIL-DSHLEELAAKYP--ETK-FVKINAE-----------------------KA-FLVNYLDI 74 (113)
T ss_pred CCEEEEEEe-CCCCCcHHHH-HHHHHHHHHHCC--CcE-EEEEEch-----------------------hh-HHHHhcCC
Confidence 367888877 9999999964 589988888774 343 4433322 22 56677777
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
. ..|+.+++.+|+++....+.
T Consensus 75 ~----------~~Pt~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 75 K----------VLPTLLVYKNGELIDNIVGF 95 (113)
T ss_pred C----------cCCEEEEEECCEEEEEEecH
Confidence 3 24446667899998887653
No 105
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.37 E-value=5.3e-07 Score=59.64 Aligned_cols=44 Identities=9% Similarity=0.263 Sum_probs=35.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.|++++|.|| ++|||+|+.. .|.+.++++++++.++. +..|..+
T Consensus 20 ~~k~vlv~f~-a~wC~~C~~~-~~~~~~la~~~~~~~~~-~~~vd~d 63 (109)
T cd02993 20 RNQSTLVVLY-APWCPFCQAM-EASYEELAEKLAGSNVK-VAKFNAD 63 (109)
T ss_pred cCCCEEEEEE-CCCCHHHHHH-hHHHHHHHHHhccCCeE-EEEEECC
Confidence 4678888887 9999999954 69999999998855666 6666655
No 106
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.36 E-value=1.5e-06 Score=57.81 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred CCCeEEEEEeeCCC--CCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHh
Q psy5399 30 KGKKVIIFGVPGAF--TPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 107 (156)
Q Consensus 30 ~gk~vvl~f~~~~~--cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~ 107 (156)
.|+++||.|+ +.| ||.|... .|.|.++.++|.+. +. ++-+. .|.+..++.+
T Consensus 26 ~~~~~v~~f~-~~~~~cp~c~~i-~P~leela~e~~~~-v~-f~kVd-----------------------id~~~~la~~ 78 (111)
T cd02965 26 AGGDLVLLLA-GDPVRFPEVLDV-AVVLPELLKAFPGR-FR-AAVVG-----------------------RADEQALAAR 78 (111)
T ss_pred CCCCEEEEec-CCcccCcchhhh-HhHHHHHHHHCCCc-EE-EEEEE-----------------------CCCCHHHHHH
Confidence 4667777777 886 9999965 69999999888632 22 32222 3445688889
Q ss_pred hCCeeeccCCCcceeeeEEEEEeCCcEEEEEEccC
Q psy5399 108 LGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 142 (156)
Q Consensus 108 ~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~ 142 (156)
|+|. +.|+.+++.+|+++....+..
T Consensus 79 f~V~----------sIPTli~fkdGk~v~~~~G~~ 103 (111)
T cd02965 79 FGVL----------RTPALLFFRDGRYVGVLAGIR 103 (111)
T ss_pred cCCC----------cCCEEEEEECCEEEEEEeCcc
Confidence 9984 244477778999999887643
No 107
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.35 E-value=4.6e-07 Score=60.92 Aligned_cols=44 Identities=9% Similarity=0.222 Sum_probs=31.6
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.++|+++|.|| ++||++|+.. .|.+.+..+... .... ++.|..+
T Consensus 17 ~~~kpVlV~F~-a~WC~~C~~~-~~~~~~~~~~~~-~~~~-fv~v~vd 60 (117)
T cd02959 17 DSGKPLMLLIH-KTWCGACKAL-KPKFAESKEISE-LSHN-FVMVNLE 60 (117)
T ss_pred HcCCcEEEEEe-CCcCHHHHHH-HHHHhhhHHHHh-hcCc-EEEEEec
Confidence 46888888888 9999999964 588877665543 3345 6666655
No 108
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.34 E-value=1.9e-06 Score=57.62 Aligned_cols=43 Identities=5% Similarity=0.100 Sum_probs=31.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.++.++|.|| ++||++|+. ..|.+.++++++++. +. +..|..+
T Consensus 28 ~~~~vlV~Fy-A~WC~~Ck~-l~p~~~~la~~~~~~-v~-~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYY-APWDAQSQA-ARQEFEQVAQKLSDQ-VL-FVAINCW 70 (113)
T ss_pred CCCEEEEEEE-CCCCHHHHH-HHHHHHHHHHHhcCC-eE-EEEEECC
Confidence 3456666666 999999995 479999999998632 44 5555444
No 109
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.33 E-value=1.5e-06 Score=65.86 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=65.1
Q ss_pred eehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCc
Q psy5399 23 IQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 102 (156)
Q Consensus 23 ~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~ 102 (156)
-.+.+ +.+++-+++||.+ .||+|.. ..|.++.+.++| |+. |++||.|. .+++. ||-.- ++.
T Consensus 143 ~~i~~-la~~~gL~fFy~~-~C~~C~~-~apil~~fa~~y---gi~-v~~VS~DG----------~~~p~-fp~~~-~d~ 203 (256)
T TIGR02739 143 KAIQQ-LSQSYGLFFFYRG-KSPISQK-MAPVIQAFAKEY---GIS-VIPISVDG----------TLIPG-LPNSR-SDS 203 (256)
T ss_pred HHHHH-HHhceeEEEEECC-CCchhHH-HHHHHHHHHHHh---CCe-EEEEecCC----------CCCCC-CCCcc-CCh
Confidence 34556 4567888888865 5999996 479999999888 798 99999983 22222 55333 255
Q ss_pred hhHHhhCCeeeccCCCcceeeeEEEEEe-C-CcEEEEEEccCC
Q psy5399 103 EFTKKLGVEHEIPVLGGWRSKRYSMVVD-D-GKITQLNIEPDG 143 (156)
Q Consensus 103 ~~~~~~gv~~~~~~~~~~~~~~~~~iid-~-G~I~~~~~~~~~ 143 (156)
..++++|+. ..|++|+++ + +++.-+.++-..
T Consensus 204 gqa~~l~v~----------~~Pal~Lv~~~t~~~~pv~~G~iS 236 (256)
T TIGR02739 204 GQAQHLGVK----------YFPALYLVNPKSQKMSPLAYGFIS 236 (256)
T ss_pred HHHHhcCCc----------cCceEEEEECCCCcEEEEeeccCC
Confidence 678899984 367799997 5 666666666444
No 110
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.7e-07 Score=68.74 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=60.6
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
+.+|||+.|| ++||+.|. +-+|.|.++..+|+ |- +.-..+ + +|.+..++.+||
T Consensus 42 ~~~PVlV~fW-ap~~~~c~-qL~p~Lekla~~~~--G~--f~Lakv---------------N------~D~~p~vAaqfg 94 (304)
T COG3118 42 REVPVLVDFW-APWCGPCK-QLTPTLEKLAAEYK--GK--FKLAKV---------------N------CDAEPMVAAQFG 94 (304)
T ss_pred cCCCeEEEec-CCCCchHH-HHHHHHHHHHHHhC--Cc--eEEEEe---------------c------CCcchhHHHHhC
Confidence 5569999998 99999999 46899999999986 33 322222 2 567788999999
Q ss_pred CeeeccCCCcceeeeEEEEEeCCcEEEEEEccCCC
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGT 144 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~~ 144 (156)
+ .+.|+++++.+|+-+--+.+..+.
T Consensus 95 i----------qsIPtV~af~dGqpVdgF~G~qPe 119 (304)
T COG3118 95 V----------QSIPTVYAFKDGQPVDGFQGAQPE 119 (304)
T ss_pred c----------CcCCeEEEeeCCcCccccCCCCcH
Confidence 9 356668999999999888887663
No 111
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.30 E-value=2.1e-06 Score=64.79 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=64.0
Q ss_pred ehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCch
Q psy5399 24 QIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 103 (156)
Q Consensus 24 ~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~ 103 (156)
.+.+ +.+++-+++||.+ .||+|... .|.++.+.++| |+. |++||.|.. +.+. ||-.- ++..
T Consensus 137 ~i~~-la~~~GL~fFy~s-~Cp~C~~~-aPil~~fa~~y---g~~-v~~VS~DG~----------~~p~-fp~~~-~d~g 197 (248)
T PRK13703 137 AIAK-LAEHYGLMFFYRG-QDPIDGQL-AQVINDFRDTY---GLS-VIPVSVDGV----------INPL-LPDSR-TDQG 197 (248)
T ss_pred HHHH-HHhcceEEEEECC-CCchhHHH-HHHHHHHHHHh---CCe-EEEEecCCC----------CCCC-CCCCc-cChh
Confidence 3566 4567889999865 59999964 79999999888 798 999999842 1222 54332 2444
Q ss_pred hHHhhCCeeeccCCCcceeeeEEEEEe--CCcEEEEEEccCC
Q psy5399 104 FTKKLGVEHEIPVLGGWRSKRYSMVVD--DGKITQLNIEPDG 143 (156)
Q Consensus 104 ~~~~~gv~~~~~~~~~~~~~~~~~iid--~G~I~~~~~~~~~ 143 (156)
.+.++|+. ..|++||++ .+++.-+.++-..
T Consensus 198 qa~~l~v~----------~~PAl~Lv~~~t~~~~pv~~G~iS 229 (248)
T PRK13703 198 QAQRLGVK----------YFPALMLVDPKSGSVRPLSYGFIT 229 (248)
T ss_pred HHHhcCCc----------ccceEEEEECCCCcEEEEeeccCC
Confidence 55788884 367799997 5677777776544
No 112
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.30 E-value=3e-06 Score=62.82 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=62.3
Q ss_pred ehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCch
Q psy5399 24 QIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 103 (156)
Q Consensus 24 ~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~ 103 (156)
.|.+ ..+++-+++||.+ .||+|..+ .|.++.+.++| |+. |+.||.|... ++. ||-... +..
T Consensus 114 ~l~~-la~~~gL~~F~~~-~C~~C~~~-~pil~~~~~~y---g~~-v~~vs~DG~~----------~~~-fp~~~~-~~g 174 (215)
T PF13728_consen 114 ALKQ-LAQKYGLFFFYRS-DCPYCQQQ-APILQQFADKY---GFS-VIPVSLDGRP----------IPS-FPNPRP-DPG 174 (215)
T ss_pred HHHH-HhhCeEEEEEEcC-CCchhHHH-HHHHHHHHHHh---CCE-EEEEecCCCC----------CcC-CCCCCC-CHH
Confidence 4556 4677888888855 69999965 79999999888 798 9999998321 111 443222 556
Q ss_pred hHHhhCCeeeccCCCcceeeeEEEEEe-CC-cEEEEEEcc
Q psy5399 104 FTKKLGVEHEIPVLGGWRSKRYSMVVD-DG-KITQLNIEP 141 (156)
Q Consensus 104 ~~~~~gv~~~~~~~~~~~~~~~~~iid-~G-~I~~~~~~~ 141 (156)
.+++||+. ..|++|+++ ++ ++.-+.++-
T Consensus 175 ~~~~l~v~----------~~Pal~Lv~~~~~~~~pv~~G~ 204 (215)
T PF13728_consen 175 QAKRLGVK----------VTPALFLVNPNTKKWYPVSQGF 204 (215)
T ss_pred HHHHcCCC----------cCCEEEEEECCCCeEEEEeeec
Confidence 88899984 366799997 55 555555553
No 113
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.23 E-value=1.6e-06 Score=55.94 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=52.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|+ +.||+.|... .|.+.++.+++.+ ++. ++-|..+ .+..++++|++
T Consensus 17 ~~~vvv~f~-~~~C~~C~~~-~~~~~~~~~~~~~-~v~-~~~vd~~-----------------------~~~~l~~~~~v 69 (103)
T PF00085_consen 17 DKPVVVYFY-APWCPPCKAF-KPILEKLAKEYKD-NVK-FAKVDCD-----------------------ENKELCKKYGV 69 (103)
T ss_dssp SSEEEEEEE-STTSHHHHHH-HHHHHHHHHHTTT-TSE-EEEEETT-----------------------TSHHHHHHTTC
T ss_pred CCCEEEEEe-CCCCCccccc-cceeccccccccc-ccc-cchhhhh-----------------------ccchhhhccCC
Confidence 577888887 8899999964 7999999998875 444 4444332 23567888888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEcc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 141 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~ 141 (156)
.. .|+.+++.+|+......+.
T Consensus 70 ~~----------~Pt~~~~~~g~~~~~~~g~ 90 (103)
T PF00085_consen 70 KS----------VPTIIFFKNGKEVKRYNGP 90 (103)
T ss_dssp SS----------SSEEEEEETTEEEEEEESS
T ss_pred CC----------CCEEEEEECCcEEEEEECC
Confidence 42 3447777888888866554
No 114
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.21 E-value=3.5e-06 Score=58.44 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=26.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 63 (156)
.++++||.|| ++||++|... -|.|.++.+++.
T Consensus 22 ~~~lVVvdF~-A~WCgpCk~m-~p~l~~la~~~~ 53 (142)
T PLN00410 22 EERLVVIRFG-HDWDETCMQM-DEVLASVAETIK 53 (142)
T ss_pred CCCEEEEEEE-CCCChhHHHH-HHHHHHHHHHcC
Confidence 4567777777 9999999965 499999998876
No 115
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.20 E-value=2.5e-06 Score=63.54 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=48.2
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|| ++||++|+. ..|.+.++++++++ .+. +..+.. |.+..++++|++
T Consensus 52 ~~~vlV~Fy-ApWC~~Ck~-~~P~~e~la~~~~~-~v~-~~~VD~-----------------------~~~~~l~~~~~I 104 (224)
T PTZ00443 52 TGPWFVKFY-APWCSHCRK-MAPAWERLAKALKG-QVN-VADLDA-----------------------TRALNLAKRFAI 104 (224)
T ss_pred CCCEEEEEE-CCCChHHHH-HHHHHHHHHHHcCC-CeE-EEEecC-----------------------cccHHHHHHcCC
Confidence 467888877 999999996 47999999988863 122 332222 223468888888
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEE
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLN 138 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~ 138 (156)
. ..|+++++++|+++...
T Consensus 105 ~----------~~PTl~~f~~G~~v~~~ 122 (224)
T PTZ00443 105 K----------GYPTLLLFDKGKMYQYE 122 (224)
T ss_pred C----------cCCEEEEEECCEEEEee
Confidence 4 24447888888876543
No 116
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.20 E-value=2.9e-06 Score=60.97 Aligned_cols=85 Identities=11% Similarity=0.184 Sum_probs=54.1
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
++|||.|| ++||+.|... -|.|.+++++|. .+. ++-|..+. . .++..|++.
T Consensus 84 ~~VVV~Fy-a~wc~~Ck~m-~~~l~~LA~~~~--~vk-F~kVd~d~-----------------------~-~l~~~f~v~ 134 (175)
T cd02987 84 TTVVVHIY-EPGIPGCAAL-NSSLLCLAAEYP--AVK-FCKIRASA-----------------------T-GASDEFDTD 134 (175)
T ss_pred cEEEEEEE-CCCCchHHHH-HHHHHHHHHHCC--CeE-EEEEeccc-----------------------h-hhHHhCCCC
Confidence 37777777 9999999965 488999998875 344 55444431 1 355666663
Q ss_pred eeccCCCcceeeeEEEEEeCCcEEEEEEcc---CCCceeecchhhhh
Q psy5399 112 HEIPVLGGWRSKRYSMVVDDGKITQLNIEP---DGTGLTCSLVDELK 155 (156)
Q Consensus 112 ~~~~~~~~~~~~~~~~iid~G~I~~~~~~~---~~~~~~~~~~~~~l 155 (156)
..|+.+++.+|+++...++. .+..-+..+++.+|
T Consensus 135 ----------~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L 171 (175)
T cd02987 135 ----------ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFL 171 (175)
T ss_pred ----------CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHH
Confidence 24447777899999876543 22334444454443
No 117
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.17 E-value=7.3e-06 Score=55.67 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=16.5
Q ss_pred hCCCeEEEEEeeCCCCCCCCc
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~ 49 (156)
-.+|+++|.|+ ++||++|+.
T Consensus 13 ~~~KpVll~f~-a~WC~~Ck~ 32 (124)
T cd02955 13 REDKPIFLSIG-YSTCHWCHV 32 (124)
T ss_pred HcCCeEEEEEc-cCCCHhHHH
Confidence 35788888876 999999994
No 118
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.12 E-value=8.1e-06 Score=54.45 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=25.3
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
+.++++ |+++|||+|... .|.+.++.+++ ..+. +..+..+
T Consensus 23 ~~vvv~-f~a~wC~~C~~~-~~~l~~la~~~--~~i~-~~~vd~d 62 (113)
T cd02975 23 VDLVVF-SSKEGCQYCEVT-KQLLEELSELS--DKLK-LEIYDFD 62 (113)
T ss_pred eEEEEE-eCCCCCCChHHH-HHHHHHHHHhc--CceE-EEEEeCC
Confidence 344454 459999999953 57777777665 2344 5555444
No 119
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.05 E-value=1.1e-05 Score=53.92 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~ 64 (156)
+++++|.|| ++||++|+.. .|.+.++++++++
T Consensus 19 ~~~vvV~f~-a~wC~~C~~~-~~~~~~la~~~~~ 50 (114)
T cd02992 19 PSAWLVEFY-ASWCGHCRAF-APTWKKLARDLRK 50 (114)
T ss_pred CCeEEEEEE-CCCCHHHHHH-hHHHHHHHHHHHh
Confidence 356777777 9999999965 7999999998864
No 120
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.02 E-value=1.4e-05 Score=58.21 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=54.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++|||.|| ++||+.|... -|.|.+++++|. .+. ++-|..+. .+..|++
T Consensus 102 ~~~VVV~Fy-a~wc~~C~~m-~~~l~~LA~k~~--~vk-FvkI~ad~--------------------------~~~~~~i 150 (192)
T cd02988 102 DTWVVVHLY-KDGIPLCRLL-NQHLSELARKFP--DTK-FVKIISTQ--------------------------CIPNYPD 150 (192)
T ss_pred CCEEEEEEE-CCCCchHHHH-HHHHHHHHHHCC--CCE-EEEEEhHH--------------------------hHhhCCC
Confidence 347888887 9999999975 599999999985 455 66555431 0244555
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEccCCC---ceeecchhhhh
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGT---GLTCSLVDELK 155 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~~---~~~~~~~~~~l 155 (156)
. ..|+.+++.+|+++...++...- .-+..+++.+|
T Consensus 151 ~----------~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L 188 (192)
T cd02988 151 K----------NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLL 188 (192)
T ss_pred C----------CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHH
Confidence 3 24447777899999887764322 34444454443
No 121
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.99 E-value=1.1e-05 Score=52.20 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=46.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH-cCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA-KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
+++++|.|| ++||++|+.. .|.+.+++++++. .++. ++.+..+.+ ...++++|+
T Consensus 18 ~~~~~v~f~-a~~C~~C~~~-~~~~~~~~~~~~~~~~~~-~~~id~~~~----------------------~~~~~~~~~ 72 (105)
T cd02998 18 KKDVLVEFY-APWCGHCKNL-APEYEKLAAVFANEDDVV-IAKVDADEA----------------------NKDLAKKYG 72 (105)
T ss_pred CCcEEEEEE-CCCCHHHHhh-ChHHHHHHHHhCCCCCEE-EEEEECCCc----------------------chhhHHhCC
Confidence 457777777 9999999954 6999999988862 2333 444443321 346677787
Q ss_pred CeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 110 VEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 110 v~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
+. ..|++++++ +|+....+
T Consensus 73 i~----------~~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 73 VS----------GFPTLKFFPKGSTEPVKY 92 (105)
T ss_pred CC----------CcCEEEEEeCCCCCcccc
Confidence 74 244477777 54544443
No 122
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.97 E-value=4.4e-06 Score=70.25 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=45.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhH---HHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGY---LAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
+||+++|.|| ++||++|+..+ +.. .+..++++ ++. ++-+..++.+ +.+..+.+
T Consensus 473 ~gK~VlVdF~-A~WC~~Ck~~e-~~~~~~~~v~~~l~--~~~-~v~vDvt~~~-------------------~~~~~l~~ 528 (571)
T PRK00293 473 KGKPVMLDLY-ADWCVACKEFE-KYTFSDPQVQQALA--DTV-LLQADVTANN-------------------AEDVALLK 528 (571)
T ss_pred cCCcEEEEEE-CCcCHhHHHHH-HHhcCCHHHHHHhc--CCE-EEEEECCCCC-------------------hhhHHHHH
Confidence 5788999888 99999999532 332 34444443 454 5555544211 12356777
Q ss_pred hhCCeeeccCCCcceeeeEEEEEe-CCcEEE
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVD-DGKITQ 136 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~ 136 (156)
+||+. | .|+++++| +|+++.
T Consensus 529 ~~~v~------g----~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 529 HYNVL------G----LPTILFFDAQGQEIP 549 (571)
T ss_pred HcCCC------C----CCEEEEECCCCCCcc
Confidence 88874 2 34478888 999864
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.95 E-value=2.1e-05 Score=63.79 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKG 66 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 66 (156)
++++++|.|| ++||++|.. ..|.+.++++.+.+.+
T Consensus 17 ~~~~~~v~f~-a~wC~~c~~-~~~~~~~~a~~~~~~~ 51 (462)
T TIGR01130 17 SHEFVLVEFY-APWCGHCKS-LAPEYEKAADELKKKG 51 (462)
T ss_pred cCCCEEEEEE-CCCCHHHHh-hhHHHHHHHHHHhhcC
Confidence 4555666666 999999995 4699999999887655
No 124
>KOG4498|consensus
Probab=97.95 E-value=5.5e-05 Score=54.24 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=96.3
Q ss_pred cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEE
Q psy5399 17 NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF 96 (156)
Q Consensus 17 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~ 96 (156)
+..|+++.+.++++.+..+|.|.+-.-|-.|+. +..+|.++.+-+.+.|+. +++|-..+......|.....+. =.+
T Consensus 36 ~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~-~aadLa~l~~~ld~~Gv~-Li~vg~g~~~~~~~f~~q~~f~--gev 111 (197)
T KOG4498|consen 36 DSRGESVPVTSLFKERSAVVAFVRRPGCVLCRE-EAADLASLKDLLDELGVV-LIAVGPGSHVQFEDFWDQTYFS--GEV 111 (197)
T ss_pred hhcCceeehHHhhhcCCeEEEEeccCcEEEeHH-HHHHHHHHHHHHHHhCCE-EEEEeccceeecchhhcccCcc--eeE
Confidence 478999999999888889999999999999996 469999997777889999 9999887776677777777777 789
Q ss_pred EecCCchhHHhhCCeeec----------------------cCCCcceeeeEEEEEe-CCcEEEEEEccCC
Q psy5399 97 LADPNLEFTKKLGVEHEI----------------------PVLGGWRSKRYSMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 97 ~~D~~~~~~~~~gv~~~~----------------------~~~~~~~~~~~~~iid-~G~I~~~~~~~~~ 143 (156)
+.|++..++..++..... ...|.......++++- .|+|.+++.+.+.
T Consensus 112 ylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~ 181 (197)
T KOG4498|consen 112 YLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGVEGNLEGDGLLSGGVLVVGRGKKILFIHVDKET 181 (197)
T ss_pred EEcCccceechhhhhcccccccccccHHHHHHHhhcccCCCcccChHHhCCeEEEecCCeEEEEEecCCC
Confidence 999998888877665521 0112233345577776 6699999987655
No 125
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.93 E-value=2.9e-05 Score=49.34 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH-HcCCCEEEEEe
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK-AKGIHEIFCIA 74 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~~~~~v~~is 74 (156)
++++++|.|| ++||++|.. ..+.+.++.+.++ ..++. ++.++
T Consensus 14 ~~~~~~v~f~-~~~C~~C~~-~~~~~~~~~~~~~~~~~~~-~~~v~ 56 (101)
T cd02961 14 DSKDVLVEFY-APWCGHCKA-LAPEYEKLAKELKGDGKVV-VAKVD 56 (101)
T ss_pred CCCcEEEEEE-CCCCHHHHh-hhHHHHHHHHHhccCCceE-EEEee
Confidence 3456777776 899999995 4699998888874 23344 44443
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.91 E-value=4.4e-05 Score=56.50 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=48.0
Q ss_pred hCCCeEEEEEee--CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 29 IKGKKVIIFGVP--GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 29 ~~gk~vvl~f~~--~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
+++...++.|+- ++||++|... .|.+.++.+++. ++. +..+..| .|.+..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~-~p~l~~la~~~~--~~~-i~~v~vd---------------------~~~~~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKET-EQLLEELSEVSP--KLK-LEIYDFD---------------------TPEDKEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHH-HHHHHHHHhhCC--Cce-EEEEecC---------------------CcccHHHHH
Confidence 344444555553 3999999964 688888888773 444 5555554 223457888
Q ss_pred hhCCeeeccCCCcceeeeEEEEEeCCcEEE-EEEc
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVDDGKITQ-LNIE 140 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid~G~I~~-~~~~ 140 (156)
+||+.. .|+.+++++|+.+. .+.+
T Consensus 72 ~~~V~~----------~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 72 KYGVER----------VPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred HcCCCc----------cCEEEEEeCCeeeEEEEee
Confidence 888842 34466667787764 4444
No 127
>PTZ00102 disulphide isomerase; Provisional
Probab=97.89 E-value=3.2e-05 Score=63.30 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=27.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
+++.++|.|| ++||++|+. ..|.+.++++.+.+.+..
T Consensus 48 ~~~~~lv~f~-a~wC~~Ck~-~~p~~~~~a~~~~~~~~~ 84 (477)
T PTZ00102 48 ENEIVLVKFY-APWCGHCKR-LAPEYKKAAKMLKEKKSE 84 (477)
T ss_pred cCCcEEEEEE-CCCCHHHHH-hhHHHHHHHHHHHhcCCc
Confidence 4556666666 999999995 469999998888654433
No 128
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.84 E-value=1.9e-05 Score=64.55 Aligned_cols=44 Identities=14% Similarity=0.322 Sum_probs=35.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
++++++|.|| ++||++|+.. .|.|.+++++++..++. ++.|..|
T Consensus 370 ~~k~VLV~Fy-ApWC~~Ck~m-~P~~eelA~~~~~~~v~-~~kVdvD 413 (463)
T TIGR00424 370 RKEAWLVVLY-APWCPFCQAM-EASYLELAEKLAGSGVK-VAKFRAD 413 (463)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCcE-EEEEECC
Confidence 5667888877 9999999965 69999999999766666 7767666
No 129
>PTZ00102 disulphide isomerase; Provisional
Probab=97.83 E-value=2.3e-05 Score=64.14 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=32.9
Q ss_pred CCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc
Q psy5399 18 TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK 65 (156)
Q Consensus 18 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~ 65 (156)
..|.++.-.-.-.|++++|.|| ++||++|+.. .|.+.++++.+++.
T Consensus 362 l~~~~f~~~v~~~~k~vlv~f~-a~wC~~C~~~-~p~~~~~a~~~~~~ 407 (477)
T PTZ00102 362 VVGNTFEEIVFKSDKDVLLEIY-APWCGHCKNL-EPVYNELGEKYKDN 407 (477)
T ss_pred ecccchHHHHhcCCCCEEEEEE-CCCCHHHHHH-HHHHHHHHHHhccC
Confidence 3444444321125778888887 9999999965 69999999888754
No 130
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.83 E-value=3.2e-05 Score=49.97 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=45.1
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+++++|.|| ++||+.|+.. .|.+.++++++.. .+. +..+..+ .+..++++||+
T Consensus 18 ~~~vlv~f~-a~~C~~C~~~-~~~~~~~~~~~~~-~~~-~~~id~~-----------------------~~~~~~~~~~i 70 (103)
T cd03001 18 DDVWLVEFY-APWCGHCKNL-APEWKKAAKALKG-IVK-VGAVDAD-----------------------VHQSLAQQYGV 70 (103)
T ss_pred CCcEEEEEE-CCCCHHHHHH-hHHHHHHHHHhcC-Cce-EEEEECc-----------------------chHHHHHHCCC
Confidence 345777777 9999999964 6999999988753 244 5555433 23456777777
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEE
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQ 136 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~ 136 (156)
. ..|+++++++|+...
T Consensus 71 ~----------~~P~~~~~~~~~~~~ 86 (103)
T cd03001 71 R----------GFPTIKVFGAGKNSP 86 (103)
T ss_pred C----------ccCEEEEECCCCcce
Confidence 3 244477777664433
No 131
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.81 E-value=4.1e-05 Score=49.45 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA 64 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~ 64 (156)
+++++|+|| ++||++|+. ..|.+.++.+.+++
T Consensus 18 ~~~~~v~f~-~~~C~~C~~-~~~~~~~~~~~~~~ 49 (104)
T cd02995 18 DKDVLVEFY-APWCGHCKA-LAPIYEELAEKLKG 49 (104)
T ss_pred CCcEEEEEE-CCCCHHHHH-HhhHHHHHHHHhcC
Confidence 467777777 999999996 47999999998864
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=97.68 E-value=9.2e-05 Score=54.46 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=26.9
Q ss_pred EEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 34 VIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 34 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
.+|++|+++|||.|.. ..+.+.++.++|. .+. ++-|..
T Consensus 19 ~~vl~f~a~w~~~C~~-m~~vl~~l~~~~~--~~~-F~~V~~ 56 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQ-LMDVCNALVEDFP--SLE-FYVVNL 56 (204)
T ss_pred cEEEEEeCCCCcchHH-HHHHHHHHHHHCC--CcE-EEEEcc
Confidence 3444455999999995 4688889998885 455 555543
No 133
>PLN02309 5'-adenylylsulfate reductase
Probab=97.68 E-value=6e-05 Score=61.65 Aligned_cols=44 Identities=11% Similarity=0.269 Sum_probs=34.5
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
++++++|.|| ++||++|+.. .|.|.++++++...++. +..|..+
T Consensus 364 ~~k~vlV~Fy-ApWC~~Cq~m-~p~~e~LA~~~~~~~V~-f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLY-APWCPFCQAM-EASYEELAEKLAGSGVK-VAKFRAD 407 (457)
T ss_pred CCCeEEEEEE-CCCChHHHHH-HHHHHHHHHHhccCCeE-EEEEECC
Confidence 4677888877 9999999965 69999999998765666 6666655
No 134
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.67 E-value=0.00021 Score=45.80 Aligned_cols=50 Identities=16% Similarity=0.394 Sum_probs=38.6
Q ss_pred eeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 22 KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 22 ~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
...... ++++++++.|| +.|||+|.. .+|.+.++.+++.. .+. ++.+...
T Consensus 24 ~~~~~~-~~~~~~~v~f~-~~~C~~C~~-~~~~l~~~~~~~~~-~~~-~~~i~~~ 73 (127)
T COG0526 24 PLSLSE-LKGKPVLVDFW-APWCPPCRA-EAPLLEELAEEYGG-DVE-VVAVNVD 73 (127)
T ss_pred ceehhh-cCCceEEEEEE-cCcCHHHHh-hchhHHHHHHHhcC-CcE-EEEEECC
Confidence 344444 45778888887 999999996 57999999999875 456 7888775
No 135
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.51 E-value=9.4e-05 Score=56.11 Aligned_cols=121 Identities=14% Similarity=0.233 Sum_probs=74.2
Q ss_pred CcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHH-HhHHHHHHc---CCCEEEEEecCCHH---
Q psy5399 7 DTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL-AKEKDLKAK---GIHEIFCIAVNDAF--- 79 (156)
Q Consensus 7 ~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~-~~~~~~~~~---~~~~v~~is~d~~~--- 79 (156)
-.+|+|... +.+|+.+++.+.++||..||..+...|---|. ..+. ...++|... .++ ++-|+..+--
T Consensus 99 lyFP~l~g~-tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~----~sw~~p~~~~~~~~~~~~~q-~v~In~~e~~~k~ 172 (252)
T PF05176_consen 99 LYFPNLQGK-TLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMV----DSWTSPFLEDFLQEPYGRVQ-IVEINLIENWLKS 172 (252)
T ss_pred CcCCCCccc-cCCCCCcccccccCCceEEEEEeehHHHHHHH----HHHhhHHHHHHhhCCCCceE-EEEEecchHHHHH
Confidence 357999998 79999999999889998666665455543333 2222 344455433 455 8888865321
Q ss_pred HHHHHH--------HHcCCCcceEEEecC--CchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccC
Q psy5399 80 VMEAWC--------RKNNAEGKIRFLADP--NLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 80 ~~~~~~--------~~~~~~~~f~~~~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~ 142 (156)
-+..+. .+.... .|-++.+. ...+-+.+|+.. ...-|+||+| +|+|||+..+..
T Consensus 173 ~l~~~~~~~lrk~ip~~~h~-~Yf~~~~~~~~~~iRe~Lgi~N--------~~~GYvyLVD~~grIRWagsG~A 237 (252)
T PF05176_consen 173 WLVKLFMGSLRKSIPEERHD-RYFIVYRGQLSDDIREALGINN--------SYVGYVYLVDPNGRIRWAGSGPA 237 (252)
T ss_pred HHHHHHhhhhhccCCHHHCc-eEEEEeCCcccHHHHHHhCCCC--------CCcCeEEEECCCCeEEeCccCCC
Confidence 111211 111111 14444433 357888899864 3355699999 999999987654
No 136
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.43 E-value=0.0011 Score=49.38 Aligned_cols=113 Identities=12% Similarity=0.133 Sum_probs=74.8
Q ss_pred cCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCE--EEEEecCCH-HHHH--
Q psy5399 8 TLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHE--IFCIAVNDA-FVME-- 82 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~--v~~is~d~~-~~~~-- 82 (156)
+.|.+++- ..-.+.+ ..|+.+||-+- -++|.+|..+ +..|..+..++++.|..+ ++.|+.... ....
T Consensus 9 ~~p~W~i~-----~~~pm~~-~~G~VtvVALL-~asc~~c~~q-a~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~ 80 (238)
T PF04592_consen 9 PPPPWKIG-----GQDPMLN-SLGHVTVVALL-QASCYFCLLQ-ASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYW 80 (238)
T ss_pred CCCCceEC-----CchHhhh-cCCcEEeeeeh-hhhhHHHHHH-HHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHH
Confidence 44555443 3444566 68987777776 5579999976 799999999999887743 455654332 2222
Q ss_pred HHHHHcCCCcceEEEe-c-CCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEcc
Q psy5399 83 AWCRKNNAEGKIRFLA-D-PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEP 141 (156)
Q Consensus 83 ~~~~~~~~~~~f~~~~-D-~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~ 141 (156)
.+..+.... ||++. | .+..++..++-..+ - +||+| -|+++|...-|
T Consensus 81 ~l~~r~~~~--ipVyqq~~~q~dvW~~L~G~kd--------D---~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 81 ELKRRVSEH--IPVYQQDENQPDVWELLNGSKD--------D---FLIYDRCGRLTYHIPLP 129 (238)
T ss_pred HHHHhCCCC--CceecCCccccCHHHHhCCCcC--------c---EEEEeccCcEEEEecCc
Confidence 233333444 99996 3 34788888876542 2 67889 99999986543
No 137
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.42 E-value=0.00043 Score=43.25 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=37.5
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHH--HhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYL--AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP 100 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~--~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~ 100 (156)
.+||+++|+|. +.||++|...+ ..+- ....++-++++. .+-|..++.....++.. .+++ .-++.|+
T Consensus 15 ~~~kpvlv~f~-a~wC~~C~~l~-~~~~~~~~v~~~~~~~fv-~v~vd~~~~~~~~~~~~-~~~P--~~~~ldp 82 (82)
T PF13899_consen 15 KEGKPVLVDFG-ADWCPPCKKLE-REVFSDPEVQEALNKNFV-LVKVDVDDEDPNAQFDR-QGYP--TFFFLDP 82 (82)
T ss_dssp HHTSEEEEEEE-TTTTHHHHHHH-HHTTTSHHHHHHHHHCSE-EEEEETTTHHHHHHHHH-CSSS--EEEEEET
T ss_pred HcCCCEEEEEE-CCCCHhHHHHH-HHHcCCHHHHHHHHCCEE-EEEEEcCCCChhHHhCC-ccCC--EEEEeCC
Confidence 36889999986 99999998432 2221 122332234565 66666666555443333 4555 5555543
No 138
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=97.28 E-value=0.00039 Score=46.16 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=16.3
Q ss_pred hCCCeEEEEEeeCCCCCCCCc
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~ 49 (156)
-++|+++|+|+ +.||++|..
T Consensus 15 ~~~K~llv~~~-~~~c~~c~~ 34 (114)
T cd02958 15 SEKKWLLVYLQ-SEDEFDSQV 34 (114)
T ss_pred hhCceEEEEEe-cCCcchHHH
Confidence 35788888887 999999984
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.25 E-value=0.00053 Score=42.34 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=26.3
Q ss_pred EEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 36 IFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 36 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
|..|+++|||+|.. ..+.+.++++++.. .+. ++-|..+
T Consensus 3 v~~f~~~~C~~C~~-~~~~l~~l~~~~~~-~~~-~~~vd~~ 40 (82)
T TIGR00411 3 IELFTSPTCPYCPA-AKRVVEEVAKEMGD-AVE-VEYINVM 40 (82)
T ss_pred EEEEECCCCcchHH-HHHHHHHHHHHhcC-ceE-EEEEeCc
Confidence 33444999999995 47999999888752 244 5655543
No 140
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.21 E-value=0.0013 Score=37.22 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=31.5
Q ss_pred EEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHH
Q psy5399 36 IFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW 84 (156)
Q Consensus 36 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~ 84 (156)
+.|| +.||++|... .+.+.++ +....++. +..++.+.......+
T Consensus 2 ~~~~-~~~c~~c~~~-~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~ 45 (69)
T cd01659 2 VLFY-APWCPFCQAL-RPVLAEL--ALLNKGVK-FEAVDVDEDPALEKE 45 (69)
T ss_pred EEEE-CCCChhHHhh-hhHHHHH--HhhCCCcE-EEEEEcCCChHHhhH
Confidence 4444 8899999964 6888877 45566787 899988766554443
No 141
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.13 E-value=0.00086 Score=43.24 Aligned_cols=31 Identities=13% Similarity=0.124 Sum_probs=26.6
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 63 (156)
|+++++.|+ +.||+.|... .+.+.+++++++
T Consensus 12 ~~~~~~~f~-~~~~~~~~~~-~~~~~~vA~~~~ 42 (103)
T cd02982 12 GKPLLVLFY-NKDDSESEEL-RERFKEVAKKFK 42 (103)
T ss_pred CCCEEEEEE-cCChhhHHHH-HHHHHHHHHHhC
Confidence 677888877 8899999964 799999999997
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.12 E-value=0.00091 Score=41.25 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=24.7
Q ss_pred EEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC
Q psy5399 36 IFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND 77 (156)
Q Consensus 36 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~ 77 (156)
|.|| ++|||.|... .|.+.++.+++. .. +-.+..++
T Consensus 3 i~~~-a~~C~~C~~~-~~~~~~~~~e~~---~~-~~~~~v~~ 38 (76)
T TIGR00412 3 IQIY-GTGCANCQMT-EKNVKKAVEELG---ID-AEFEKVTD 38 (76)
T ss_pred EEEE-CCCCcCHHHH-HHHHHHHHHHcC---CC-eEEEEeCC
Confidence 5566 7999999964 688888887763 44 44444443
No 143
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.10 E-value=0.0033 Score=42.12 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=23.7
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcC
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKG 66 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 66 (156)
+.++|-|+ ++| |||. .+ |.+.++++++....
T Consensus 19 ~~vlV~F~-A~~-Pwc~-k~-~~~~~LA~e~~~aa 49 (116)
T cd03007 19 KYSLVKFD-TAY-PYGE-KH-EAFTRLAESSASAT 49 (116)
T ss_pred CcEEEEEe-CCC-CCCC-Ch-HHHHHHHHHHHhhc
Confidence 44666666 989 9999 54 99999999997543
No 144
>KOG0190|consensus
Probab=97.03 E-value=0.0012 Score=54.39 Aligned_cols=66 Identities=17% Similarity=0.298 Sum_probs=45.2
Q ss_pred hhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 26 ADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 26 ~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.+...+...+|+-|.++||.+|.. ..|++.+.++.+.+.+=. +--.-.|.++. ...+.+++... ||
T Consensus 36 ~~~i~~~~~vlVeFYAPWCghck~-LaPey~kAA~~Lke~~s~-i~LakVDat~~-~~~~~~y~v~g-yP 101 (493)
T KOG0190|consen 36 KETINGHEFVLVEFYAPWCGHCKA-LAPEYEKAATELKEEGSP-VKLAKVDATEE-SDLASKYEVRG-YP 101 (493)
T ss_pred HHHhccCceEEEEEEchhhhhhhh-hCcHHHHHHHHhhccCCC-ceeEEeecchh-hhhHhhhcCCC-CC
Confidence 444456665555444999999996 579999999999876444 33334554444 67777887765 55
No 145
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.00 E-value=0.0076 Score=42.37 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=69.9
Q ss_pred ccCCCcCCcceecc---------cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHH-hHHHHHHc-----CC
Q psy5399 3 AQVGDTLPDALLHE---------NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA-KEKDLKAK-----GI 67 (156)
Q Consensus 3 l~~G~~~P~f~l~~---------~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~-~~~~~~~~-----~~ 67 (156)
++.|+++|..++.+ ..+.++.+.++ +.||..||.-+.|. + . .+++++ +.+.+++. ..
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~-l~GKVrviq~iAGr--~----s-ake~N~~l~~aik~a~f~~d~y 72 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQ-LPGKVRVIQHIAGR--S----S-AKEMNAPLIEAIKAAKFPHDKY 72 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccc-cCCCEEEEEEeccC--C----c-hhHhhHHHHHHHHHcCCCccce
Confidence 46799999998862 12234555566 68886555554232 1 1 233332 44444433 33
Q ss_pred CEEEEE-ecCC-----HHHHHHHHHHcCCCcceE-EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEE
Q psy5399 68 HEIFCI-AVND-----AFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 68 ~~v~~i-s~d~-----~~~~~~~~~~~~~~~~f~-~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~ 139 (156)
+ ..+| +.|+ ---.+..++...-..|+. ++.|.++.+.++|++... .-+.+++| +|+|+++.-
T Consensus 73 q-tttIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~---------~SaiiVlDK~G~V~F~k~ 142 (160)
T PF09695_consen 73 Q-TTTIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE---------SSAIIVLDKQGKVQFVKE 142 (160)
T ss_pred e-EEEEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC---------CceEEEEcCCccEEEEEC
Confidence 3 4433 4443 233444444444221144 789999999999999642 11255668 999999987
Q ss_pred ccC
Q psy5399 140 EPD 142 (156)
Q Consensus 140 ~~~ 142 (156)
+.-
T Consensus 143 G~L 145 (160)
T PF09695_consen 143 GAL 145 (160)
T ss_pred CCC
Confidence 654
No 146
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.97 E-value=0.0011 Score=39.55 Aligned_cols=35 Identities=11% Similarity=-0.063 Sum_probs=20.6
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.|.++|||+|.. ..+.+.++.+.. .++. +.-+..+
T Consensus 5 ~f~~~~C~~C~~-~~~~l~~l~~~~--~~i~-~~~id~~ 39 (67)
T cd02973 5 VFVSPTCPYCPD-AVQAANRIAALN--PNIS-AEMIDAA 39 (67)
T ss_pred EEECCCCCCcHH-HHHHHHHHHHhC--CceE-EEEEEcc
Confidence 344899999994 356666665432 2354 5444433
No 147
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=96.91 E-value=0.0018 Score=41.26 Aligned_cols=31 Identities=3% Similarity=-0.189 Sum_probs=21.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 62 (156)
.+|+-|.+|.+.||++|.. ..+.+.++.+++
T Consensus 11 ~~pv~i~~F~~~~C~~C~~-~~~~~~~l~~~~ 41 (89)
T cd03026 11 NGPINFETYVSLSCHNCPD-VVQALNLMAVLN 41 (89)
T ss_pred CCCEEEEEEECCCCCCcHH-HHHHHHHHHHHC
Confidence 3567777777999999994 345565565543
No 148
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.83 E-value=0.00066 Score=46.42 Aligned_cols=20 Identities=10% Similarity=0.056 Sum_probs=16.6
Q ss_pred hCCCeEEEEEeeCCCCCCCCc
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~ 49 (156)
-++|+++|+|+ +.||++|+.
T Consensus 21 ~~~Kpvmv~f~-sdwC~~Ck~ 40 (130)
T cd02960 21 KSNKPLMVIHH-LEDCPHSQA 40 (130)
T ss_pred HCCCeEEEEEe-CCcCHhHHH
Confidence 36888888876 999999984
No 149
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.70 E-value=0.0096 Score=35.40 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=32.2
Q ss_pred EEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEec
Q psy5399 37 FGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 37 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D 99 (156)
.+|.++|||+|.. ..+.| .+.++. +.-+..++ ++..+++.+.++... +|.+..
T Consensus 3 ~lf~~~~C~~C~~-~~~~l-------~~~~i~-~~~vdi~~~~~~~~~~~~~~~~~~-vP~~~~ 56 (74)
T TIGR02196 3 KVYTTPWCPPCKK-AKEYL-------TSKGIA-FEEIDVEKDSAAREEVLKVLGQRG-VPVIVI 56 (74)
T ss_pred EEEcCCCChhHHH-HHHHH-------HHCCCe-EEEEeccCCHHHHHHHHHHhCCCc-ccEEEE
Confidence 3455999999994 22333 335777 77777653 444455666666544 665554
No 150
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.47 E-value=0.0027 Score=51.53 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc--CCCEEEEEec
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK--GIHEIFCIAV 75 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~--~~~~v~~is~ 75 (156)
.++.++|.|| ++||++|... .|.+.++++.++.. ++. ++.+..
T Consensus 363 ~~~~vlv~f~-a~wC~~C~~~-~p~~~~~~~~~~~~~~~i~-~~~id~ 407 (462)
T TIGR01130 363 ETKDVLVEFY-APWCGHCKNL-APIYEELAEKYKDAESDVV-IAKMDA 407 (462)
T ss_pred CCCeEEEEEE-CCCCHhHHHH-HHHHHHHHHHhhcCCCcEE-EEEEEC
Confidence 4667777777 9999999964 69999999999852 344 454543
No 151
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.33 E-value=0.00032 Score=47.94 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=24.6
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
..+|+| .++|||-|.. .+|.|.++++..+ +++ +=.++.|
T Consensus 43 ~~ilvi-~e~WCgD~~~-~vP~l~kiae~~p--~i~-~~~i~rd 81 (129)
T PF14595_consen 43 YNILVI-TETWCGDCAR-NVPVLAKIAEANP--NIE-VRIILRD 81 (129)
T ss_dssp EEEEEE---TT-HHHHH-HHHHHHHHHHH-T--TEE-EEEE-HH
T ss_pred cEEEEE-ECCCchhHHH-HHHHHHHHHHhCC--CCe-EEEEEec
Confidence 344444 4999999995 6999999998754 555 5555554
No 152
>KOG0190|consensus
Probab=96.21 E-value=0.0047 Score=50.91 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.+|-|+|-|| +.||.+|..- -|.++++++.|++. -. |+..-+|
T Consensus 383 e~KdVLvEfy-APWCgHCk~l-aP~~eeLAe~~~~~-~~-vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFY-APWCGHCKAL-APIYEELAEKYKDD-EN-VVIAKMD 425 (493)
T ss_pred cccceEEEEc-Ccccchhhhh-hhHHHHHHHHhcCC-CC-cEEEEec
Confidence 4677888888 9999999965 59999999999863 12 4444444
No 153
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.20 E-value=0.012 Score=43.53 Aligned_cols=28 Identities=14% Similarity=-0.056 Sum_probs=18.1
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKE 59 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~ 59 (156)
.++++|..|+++|||+|.. ..+.+.++.
T Consensus 132 ~~pv~I~~F~a~~C~~C~~-~~~~l~~l~ 159 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPY-AVLMAHKFA 159 (215)
T ss_pred CCCcEEEEEECCCCCCcHH-HHHHHHHHH
Confidence 3566666566999999994 334444444
No 154
>PHA02125 thioredoxin-like protein
Probab=96.04 E-value=0.011 Score=36.19 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=13.6
Q ss_pred EEEEeeCCCCCCCCcCChhhHH
Q psy5399 35 IIFGVPGAFTPGCSVTHLPGYL 56 (156)
Q Consensus 35 vl~f~~~~~cp~C~~~~l~~l~ 56 (156)
|++|+ ++||++|+.- .|.|.
T Consensus 2 iv~f~-a~wC~~Ck~~-~~~l~ 21 (75)
T PHA02125 2 IYLFG-AEWCANCKMV-KPMLA 21 (75)
T ss_pred EEEEE-CCCCHhHHHH-HHHHH
Confidence 45555 9999999943 35553
No 155
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.98 E-value=0.021 Score=34.46 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=18.0
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND 77 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~ 77 (156)
|.++|||+|+. ..+. +.+.++. +-.+..+.
T Consensus 5 y~~~~C~~C~~-~~~~-------L~~~~~~-~~~idi~~ 34 (77)
T TIGR02200 5 YGTTWCGYCAQ-LMRT-------LDKLGAA-YEWVDIEE 34 (77)
T ss_pred EECCCChhHHH-HHHH-------HHHcCCc-eEEEeCcC
Confidence 44899999994 2232 2344666 55566553
No 156
>smart00594 UAS UAS domain.
Probab=95.92 E-value=0.013 Score=39.33 Aligned_cols=20 Identities=10% Similarity=0.149 Sum_probs=16.1
Q ss_pred hCCCeEEEEEeeCCCCCCCCc
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~ 49 (156)
-.+|.++|+|+ +.||+.|..
T Consensus 25 ~~~K~~lv~~~-~~~c~~c~~ 44 (122)
T smart00594 25 RQRRLLWLYLH-SQDSPDSQV 44 (122)
T ss_pred hhcCCEEEEEe-CCCCchHHH
Confidence 35778888887 899999984
No 157
>KOG0908|consensus
Probab=95.92 E-value=0.0094 Score=44.96 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=29.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
.+|.+++-|. ++||.+|..- .|.|..+..+|+ +.. ++=|..
T Consensus 20 g~k~v~Vdft-a~wCGPCk~I-aP~Fs~lankYp--~aV-FlkVdV 60 (288)
T KOG0908|consen 20 GGKLVVVDFT-ASWCGPCKRI-APIFSDLANKYP--GAV-FLKVDV 60 (288)
T ss_pred CceEEEEEEE-ecccchHHhh-hhHHHHhhhhCc--ccE-EEEEeH
Confidence 3455666655 9999999976 599999999996 554 444433
No 158
>KOG0191|consensus
Probab=95.91 E-value=0.018 Score=46.26 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
.+++.++.|| ++||.+|... .|.+.++...++. . +...+.| ..+.+..++++++.. ||.+.
T Consensus 46 ~~~~~~v~fy-apwc~~c~~l-~~~~~~~~~~l~~---~-~~~~~vd-~~~~~~~~~~y~i~g-fPtl~ 106 (383)
T KOG0191|consen 46 DDSPWLVEFY-APWCGHCKKL-APTYKKLAKALKG---K-VKIGAVD-CDEHKDLCEKYGIQG-FPTLK 106 (383)
T ss_pred cCCceEEEEE-CCCCcchhhh-chHHHHHHHHhcC---c-eEEEEeC-chhhHHHHHhcCCcc-CcEEE
Confidence 3456777777 9999999975 6999999988874 2 3323333 335566788888776 66443
No 159
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.76 E-value=0.027 Score=34.78 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=33.5
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+.++|+ ..+|||+|.. ...+- .+.|+. .-.+..+.......+.+..+... +|.+...+
T Consensus 8 ~~V~ly--~~~~Cp~C~~--ak~~L------~~~gi~-y~~idi~~~~~~~~~~~~~g~~~-vP~i~i~g 65 (79)
T TIGR02190 8 ESVVVF--TKPGCPFCAK--AKATL------KEKGYD-FEEIPLGNDARGRSLRAVTGATT-VPQVFIGG 65 (79)
T ss_pred CCEEEE--ECCCCHhHHH--HHHHH------HHcCCC-cEEEECCCChHHHHHHHHHCCCC-cCeEEECC
Confidence 334444 3889999993 33333 245787 66677664444445555555433 77665433
No 160
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.53 E-value=0.04 Score=32.57 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=29.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+|...|||+|.. +.. .+.+.++. +..+..+. .+..+++.+..+... +|.+.+.+
T Consensus 4 l~~~~~c~~c~~--~~~------~l~~~~i~-~~~~~i~~~~~~~~~~~~~~~~~~-vP~i~~~~ 58 (73)
T cd02976 4 VYTKPDCPYCKA--TKR------FLDERGIP-FEEVDVDEDPEALEELKKLNGYRS-VPVVVIGD 58 (73)
T ss_pred EEeCCCChhHHH--HHH------HHHHCCCC-eEEEeCCCCHHHHHHHHHHcCCcc-cCEEEECC
Confidence 344889999983 221 22335777 77777764 333334444333222 77776644
No 161
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.51 E-value=0.054 Score=34.98 Aligned_cols=64 Identities=19% Similarity=0.051 Sum_probs=35.0
Q ss_pred HhCCCeEEEEEee---CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 28 AIKGKKVIIFGVP---GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 28 ~~~gk~vvl~f~~---~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+.+.++|+|+--. .+|||+|. . +..+ +.+.|+. ...+..+ +++...+..+..+.+- +|.+.-.+
T Consensus 8 ~i~~~~Vvvf~kg~~~~~~Cp~C~-~-ak~l------L~~~~i~-~~~~di~~~~~~~~~l~~~tg~~t-vP~vfi~g 75 (97)
T TIGR00365 8 QIKENPVVLYMKGTPQFPQCGFSA-R-AVQI------LKACGVP-FAYVNVLEDPEIRQGIKEYSNWPT-IPQLYVKG 75 (97)
T ss_pred HhccCCEEEEEccCCCCCCCchHH-H-HHHH------HHHcCCC-EEEEECCCCHHHHHHHHHHhCCCC-CCEEEECC
Confidence 3566777777542 27899998 3 2322 2344777 7667664 3444444444444322 77555433
No 162
>KOG3425|consensus
Probab=95.51 E-value=0.021 Score=38.30 Aligned_cols=50 Identities=16% Similarity=0.357 Sum_probs=34.8
Q ss_pred hhhHhCCCeEEEEEeeC-------CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC
Q psy5399 25 IADAIKGKKVIIFGVPG-------AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND 77 (156)
Q Consensus 25 l~~~~~gk~vvl~f~~~-------~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~ 77 (156)
+++.-+|+.+.++|..+ +|||.|.. +.|-+.+..+.. ..++. ++.+-..+
T Consensus 19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~-AEPvi~~alk~a-p~~~~-~v~v~VG~ 75 (128)
T KOG3425|consen 19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVA-AEPVINEALKHA-PEDVH-FVHVYVGN 75 (128)
T ss_pred HHHHhCCceEEEEEecccCCCCCCcCCchHHH-hhHHHHHHHHhC-CCceE-EEEEEecC
Confidence 45533677777777744 59999996 469999888744 34566 77776653
No 163
>PHA03050 glutaredoxin; Provisional
Probab=95.36 E-value=0.081 Score=34.93 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=13.8
Q ss_pred hHhCCCeEEEEEeeCCCCCCCC
Q psy5399 27 DAIKGKKVIIFGVPGAFTPGCS 48 (156)
Q Consensus 27 ~~~~gk~vvl~f~~~~~cp~C~ 48 (156)
++.+++.++|+. .+|||+|.
T Consensus 8 ~~i~~~~V~vys--~~~CPyC~ 27 (108)
T PHA03050 8 QRLANNKVTIFV--KFTCPFCR 27 (108)
T ss_pred HHhccCCEEEEE--CCCChHHH
Confidence 334555666554 88999999
No 164
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=95.26 E-value=0.016 Score=41.43 Aligned_cols=106 Identities=13% Similarity=0.187 Sum_probs=57.3
Q ss_pred ccCCCcCCcceecccCCCceeehhhHh--CCCeEEEEEeeCCCCCCCCcCChhhHHHhHH-------HHHH------cCC
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAI--KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK-------DLKA------KGI 67 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~-------~~~~------~~~ 67 (156)
+.+|..+|+..+..-.|++++.|.+.+ .|++-|++|-...-.+.+. ..+..|.+..+ .|.. .-+
T Consensus 30 l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~-~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~~ 108 (169)
T PF07976_consen 30 LRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQL-SRLSALADYLESPSSFLSRFTPKDRDPDSVF 108 (169)
T ss_dssp S-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCC-CHHHHHHHHHHSTTSHHHHHSBTTS-TTSSE
T ss_pred cCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhH-HHHHHHHHHHHhcchHHHhcCCCCCCCCCee
Confidence 689999999999867899999999854 5888999887444343333 22444444332 2222 124
Q ss_pred CEEEEEecCC---------HHHHHHHHHHcCCCcceEEEecC------CchhHHhhCCe
Q psy5399 68 HEIFCIAVND---------AFVMEAWCRKNNAEGKIRFLADP------NLEFTKKLGVE 111 (156)
Q Consensus 68 ~~v~~is~d~---------~~~~~~~~~~~~~~~~f~~~~D~------~~~~~~~~gv~ 111 (156)
+ ++.|.... |+..+.+..++++.. ..++.|. .+..++.|||.
T Consensus 109 ~-~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~-~~vy~Dd~~~~~~~g~~y~~~Gid 165 (169)
T PF07976_consen 109 D-VLLIHSSPRDEVELFDLPEIFRPFDGKRGWDY-WKVYVDDESYHSGHGDAYEKYGID 165 (169)
T ss_dssp E-EEEEESS-CCCS-GGGS-CCCS-EETTTTC---SSEEE-S-SSSSTT--HHHHCTBB
T ss_pred E-EEEEecCCCCceeHHHCcHhhCcccCCCCccc-eeEEecCcccccCcccHHHhhCCC
Confidence 4 77776542 444455555556543 5577775 36888888875
No 165
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=95.18 E-value=0.03 Score=35.01 Aligned_cols=35 Identities=6% Similarity=-0.083 Sum_probs=23.5
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.|..+|||+|.. ....|.++..++ .++. +.-+..+
T Consensus 5 iy~~~~C~~C~~-a~~~L~~l~~~~--~~i~-~~~idi~ 39 (85)
T PRK11200 5 IFGRPGCPYCVR-AKELAEKLSEER--DDFD-YRYVDIH 39 (85)
T ss_pred EEeCCCChhHHH-HHHHHHhhcccc--cCCc-EEEEECC
Confidence 344889999994 556666666544 3777 7777665
No 166
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.06 E-value=0.068 Score=33.31 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=31.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.|..+|||+|.. +..+- .+.|+. +--+..+...+..+.....+... +|++...+
T Consensus 5 lYt~~~Cp~C~~--ak~~L------~~~gI~-~~~idi~~~~~~~~~~~~~g~~~-vPvv~i~~ 58 (81)
T PRK10329 5 IYTRNDCVQCHA--TKRAM------ESRGFD-FEMINVDRVPEAAETLRAQGFRQ-LPVVIAGD 58 (81)
T ss_pred EEeCCCCHhHHH--HHHHH------HHCCCc-eEEEECCCCHHHHHHHHHcCCCC-cCEEEECC
Confidence 344789999993 33332 456888 77777764333333334445432 77766554
No 167
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.98 E-value=0.028 Score=34.56 Aligned_cols=54 Identities=6% Similarity=0.044 Sum_probs=29.0
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHH-HHHHcCCCcceEEEe
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEA-WCRKNNAEGKIRFLA 98 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~-~~~~~~~~~~f~~~~ 98 (156)
|..+|||+|.. ..+.|.++. .. .... ++-|+.+ +....++ +.+..+... +|.+.
T Consensus 4 f~~~~Cp~C~~-~~~~L~~~~--i~-~~~~-~~~v~~~~~~~~~~~~l~~~~g~~~-vP~v~ 59 (84)
T TIGR02180 4 FSKSYCPYCKK-AKEILAKLN--VK-PAYE-VVELDQLSNGSEIQDYLEEITGQRT-VPNIF 59 (84)
T ss_pred EECCCChhHHH-HHHHHHHcC--CC-CCCE-EEEeeCCCChHHHHHHHHHHhCCCC-CCeEE
Confidence 34999999994 445555544 11 1244 6666654 3333433 445455432 66443
No 168
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=94.98 E-value=0.066 Score=31.39 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=29.4
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHH-HHHHHHHHcCCCcceEEEecCC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAF-VMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~-~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
|...|||+|.. .... +.+.++. +.-+..+... ..+.+.+..+... +|.+...+
T Consensus 5 y~~~~Cp~C~~-~~~~-------L~~~~i~-~~~~di~~~~~~~~~l~~~~~~~~-~P~~~~~~ 58 (72)
T cd02066 5 FSKSTCPYCKR-AKRL-------LESLGIE-FEEIDILEDGELREELKELSGWPT-VPQIFING 58 (72)
T ss_pred EECCCCHHHHH-HHHH-------HHHcCCc-EEEEECCCCHHHHHHHHHHhCCCC-cCEEEECC
Confidence 33889999993 2222 2334577 7667665433 3344444455432 77666544
No 169
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.79 E-value=0.049 Score=41.34 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=16.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKE 59 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~ 59 (156)
++.+|..|. ...||+|+.-+ ..+.++.
T Consensus 117 ak~~I~vFt-Dp~CpyC~kl~-~~l~~~~ 143 (251)
T PRK11657 117 APRIVYVFA-DPNCPYCKQFW-QQARPWV 143 (251)
T ss_pred CCeEEEEEE-CCCChhHHHHH-HHHHHHh
Confidence 444455554 88899999543 5555544
No 170
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=94.77 E-value=0.053 Score=40.70 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=21.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEE
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCI 73 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~i 73 (156)
.|+.+|+.|. ...||+|+.-+ +.+.++ .+.++. |..+
T Consensus 106 ~~k~~I~vFt-Dp~CpyCkkl~-~~l~~~----~~~~v~-v~~~ 142 (232)
T PRK10877 106 QEKHVITVFT-DITCGYCHKLH-EQMKDY----NALGIT-VRYL 142 (232)
T ss_pred CCCEEEEEEE-CCCChHHHHHH-HHHHHH----hcCCeE-EEEE
Confidence 3555555554 88899999543 555443 344666 5443
No 171
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.69 E-value=0.069 Score=32.22 Aligned_cols=53 Identities=8% Similarity=0.100 Sum_probs=30.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP 100 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~ 100 (156)
+|..++||+|.. ....| .+.|+. +-.+..+......+..++.+... +|++...
T Consensus 3 ly~~~~Cp~C~~-ak~~L-------~~~~i~-~~~~di~~~~~~~~~~~~~g~~~-vP~v~~~ 55 (72)
T TIGR02194 3 VYSKNNCVQCKM-TKKAL-------EEHGIA-FEEINIDEQPEAIDYVKAQGFRQ-VPVIVAD 55 (72)
T ss_pred EEeCCCCHHHHH-HHHHH-------HHCCCc-eEEEECCCCHHHHHHHHHcCCcc-cCEEEEC
Confidence 455788999993 32222 345787 76677664434444444556432 7766653
No 172
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.68 E-value=0.13 Score=30.95 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.|..++||+|.. . ..+- ++.++. +-.+..+. ++..+++.+..+....+|.+.-.+
T Consensus 4 ly~~~~Cp~C~~-a-k~~L------~~~~i~-~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g 59 (75)
T cd03418 4 IYTKPNCPYCVR-A-KALL------DKKGVD-YEEIDVDGDPALREEMINRSGGRRTVPQIFIGD 59 (75)
T ss_pred EEeCCCChHHHH-H-HHHH------HHCCCc-EEEEECCCCHHHHHHHHHHhCCCCccCEEEECC
Confidence 444789999993 2 3322 335777 66666653 555566666655431277655433
No 173
>KOG1731|consensus
Probab=94.65 E-value=0.012 Score=49.03 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=43.7
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH-cCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA-KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
.-+|-|| ++||+.|+.- .|.++++++.+.. .++..|.+|...+.+ ..+.|.+++++. ||.+
T Consensus 59 ~~lVEFy-~swCGhCr~F-APtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~-~Ptl 120 (606)
T KOG1731|consen 59 AKLVEFY-NSWCGHCRAF-APTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG-YPTL 120 (606)
T ss_pred hHHHHHH-Hhhhhhhhhc-chHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC-Ccee
Confidence 3566676 9999999987 5999999988864 344435566655443 456799999876 6644
No 174
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.25 E-value=0.022 Score=38.31 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=30.2
Q ss_pred CCCeEEEEEeeC------CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 30 KGKKVIIFGVPG------AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 30 ~gk~vvl~f~~~------~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
.++++.|+|+.+ +|||.|+. +.|.+.+...... .+.. ++-+...+..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~-aep~v~~~f~~~~-~~~~-lv~v~VG~r~ 70 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVA-AEPVVEKAFKKAP-ENAR-LVYVEVGDRP 70 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHH-HHHHHHHHHHH-S-TTEE-EEEEE---HH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHH-HHHHHHHHHHhCC-CCce-EEEEEcCCHH
Confidence 467888888843 69999996 5699888777743 3455 6667766543
No 175
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=94.23 E-value=0.14 Score=31.32 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=30.0
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.|..+|||+|. .. ..+- .+.|+. +--+..+ +++..+++.+..+... +|.+.-.+
T Consensus 3 ly~~~~Cp~C~-~a-~~~L------~~~~i~-~~~~di~~~~~~~~~~~~~~g~~~-vP~i~i~g 57 (79)
T TIGR02181 3 IYTKPYCPYCT-RA-KALL------SSKGVT-FTEIRVDGDPALRDEMMQRSGRRT-VPQIFIGD 57 (79)
T ss_pred EEecCCChhHH-HH-HHHH------HHcCCC-cEEEEecCCHHHHHHHHHHhCCCC-cCEEEECC
Confidence 45588999999 33 3322 234666 5555554 3455556665555332 77554433
No 176
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.20 E-value=0.062 Score=33.77 Aligned_cols=55 Identities=5% Similarity=-0.057 Sum_probs=27.5
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcC---CCcceEEEe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNN---AEGKIRFLA 98 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~---~~~~f~~~~ 98 (156)
.|..+|||+|. .....|.++..++. ++. +.-+..+ +....+++.+..+ .+ +|.+.
T Consensus 4 vys~~~Cp~C~-~ak~~L~~~~~~~~--~i~-~~~idi~~~~~~~~~l~~~~g~~~~t--VP~if 62 (86)
T TIGR02183 4 IFGRPGCPYCV-RAKQLAEKLAIERA--DFE-FRYIDIHAEGISKADLEKTVGKPVET--VPQIF 62 (86)
T ss_pred EEeCCCCccHH-HHHHHHHHhCcccC--CCc-EEEEECCCCHHHHHHHHHHhCCCCCC--cCeEE
Confidence 44588999999 43333333322221 455 5555554 2322334555555 34 77553
No 177
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=94.17 E-value=0.092 Score=44.14 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC---CHHHHHHHHHHcCCCc-ceEEEecCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN---DAFVMEAWCRKNNAEG-KIRFLADPN 101 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d---~~~~~~~~~~~~~~~~-~f~~~~D~~ 101 (156)
++|||.|.|+ ++||-.|+.-+--.+.+-..+.+-.+ ++.+-.| +..+.++..++++.-. |.-++.+++
T Consensus 473 ~~~pVmlDfy-AdWCvtCK~~e~~tfsd~~v~~~~~~---~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~ 544 (569)
T COG4232 473 KAKPVMLDFY-ADWCVTCKENEKYTFSDPQVQQALQD---VVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQ 544 (569)
T ss_pred CCCcEEEeee-hhHHHHhHhhhhhccCcHHHHHhcCC---eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3459999998 99999999544223334444444334 4444332 2233445555554322 355666654
No 178
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.08 Score=32.92 Aligned_cols=53 Identities=9% Similarity=0.072 Sum_probs=31.6
Q ss_pred eCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEE--EecCCHHHHHHHHHHcC-CCcceEEEecCCc
Q psy5399 40 PGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFC--IAVNDAFVMEAWCRKNN-AEGKIRFLADPNL 102 (156)
Q Consensus 40 ~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~--is~d~~~~~~~~~~~~~-~~~~f~~~~D~~~ 102 (156)
.-++||+|.. . +++.+ ++|+. ..- +..+..++.+.++++.. .. .+|.+...+.
T Consensus 7 t~~~CPyC~~-a-k~~L~------~~g~~-~~~i~~~~~~~~~~~~~~~~~~g~~-tvP~I~i~~~ 62 (80)
T COG0695 7 TKPGCPYCKR-A-KRLLD------RKGVD-YEEIDVDDDEPEEAREMVKRGKGQR-TVPQIFIGGK 62 (80)
T ss_pred ECCCCchHHH-H-HHHHH------HcCCC-cEEEEecCCcHHHHHHHHHHhCCCC-CcCEEEECCE
Confidence 3567999994 3 44433 55777 443 44455556767777773 32 2887666553
No 179
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=94.06 E-value=0.4 Score=34.09 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=71.9
Q ss_pred CCcCCcceecccCCCceeehhhHh--CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc---------------CCC
Q psy5399 6 GDTLPDALLHENTPQTKIQIADAI--KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK---------------GIH 68 (156)
Q Consensus 6 G~~~P~f~l~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~---------------~~~ 68 (156)
|..+|++.+..-.+++++.|.+.+ .|++-|++|- ++.-+ . .....+.++.+.+.+. .+.
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFa-gd~~~--~-~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 76 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFA-GDIAP--A-QQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVF 76 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEc-CCCCc--h-hHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcE
Confidence 667899988866799999998864 4788888885 33221 2 2245666666665321 112
Q ss_pred EEEEEecCC---------HHHHHHHHHHcCCCcceEEEecCC------chhHHhhCCeeeccCCCcceeeeEEEEEe-CC
Q psy5399 69 EIFCIAVND---------AFVMEAWCRKNNAEGKIRFLADPN------LEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DG 132 (156)
Q Consensus 69 ~v~~is~d~---------~~~~~~~~~~~~~~~~f~~~~D~~------~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G 132 (156)
+++.|.... |+..+.+..+.+... ..++.|.+ +...+.||+.. ...+.+++. ||
T Consensus 77 ~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~-~~v~~d~~~~~~~~~~~~~~~gv~~---------~~g~vvvvRPDg 146 (167)
T cd02979 77 DVVTIHAAPRREIELLDLPAVLRPFGEKKGWDY-EKIYADDDSYHEGHGDAYEKYGIDP---------ERGAVVVVRPDQ 146 (167)
T ss_pred EEEEEecCCccccchhhCcHhhcCCCCccccce-eeEEecCccccCCcccHHHhhCCCC---------CCCCEEEECCCC
Confidence 266665432 333333333334442 33666654 57888899853 233478886 99
Q ss_pred cEEEEEE
Q psy5399 133 KITQLNI 139 (156)
Q Consensus 133 ~I~~~~~ 139 (156)
-|-++.-
T Consensus 147 yVg~~~~ 153 (167)
T cd02979 147 YVALVGP 153 (167)
T ss_pred eEEEEec
Confidence 8877644
No 180
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.91 E-value=0.088 Score=34.09 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d 76 (156)
.+..+++|+. .+|||+|. . +..+ +.+.++. .-.+..|
T Consensus 5 i~~~~Vvvys--k~~Cp~C~-~-ak~~------L~~~~i~-~~~vdid 41 (99)
T TIGR02189 5 VSEKAVVIFS--RSSCCMCH-V-VKRL------LLTLGVN-PAVHEID 41 (99)
T ss_pred hccCCEEEEE--CCCCHHHH-H-HHHH------HHHcCCC-CEEEEcC
Confidence 3456666665 78999999 3 3442 2334666 5555554
No 181
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.78 E-value=0.29 Score=29.40 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecCC
Q psy5399 34 VIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 34 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
++|+. .++||+|.. . .. .+.+.|+. +-.+..+. ++...++.+..+... +|.+.-.+
T Consensus 3 v~ly~--~~~C~~C~k-a-~~------~L~~~gi~-~~~~di~~~~~~~~el~~~~g~~~-vP~v~i~~ 59 (73)
T cd03027 3 VTIYS--RLGCEDCTA-V-RL------FLREKGLP-YVEINIDIFPERKAELEERTGSSV-VPQIFFNE 59 (73)
T ss_pred EEEEe--cCCChhHHH-H-HH------HHHHCCCc-eEEEECCCCHHHHHHHHHHhCCCC-cCEEEECC
Confidence 44444 678999993 3 22 22345787 76676653 444555555555432 77554433
No 182
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=93.75 E-value=0.09 Score=38.17 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=16.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLA 57 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~ 57 (156)
+++.++.|. ...||+|+.. .+.+.+
T Consensus 77 ~~~~i~~f~-D~~Cp~C~~~-~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFT-DPDCPYCRKL-EKELKP 101 (197)
T ss_pred CCEEEEEEE-CCCCccHHHH-HHHHhh
Confidence 455555554 8889999954 366554
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=93.59 E-value=0.22 Score=30.89 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=31.0
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+|...|||+|. .. ..+ +.+.|+. .--+..+. ++..+.+.+..+... +|.+...+
T Consensus 6 ly~~~~Cp~C~-~a-~~~------L~~~gi~-y~~~dv~~~~~~~~~l~~~~g~~~-vP~i~~~g 60 (83)
T PRK10638 6 IYTKATCPFCH-RA-KAL------LNSKGVS-FQEIPIDGDAAKREEMIKRSGRTT-VPQIFIDA 60 (83)
T ss_pred EEECCCChhHH-HH-HHH------HHHcCCC-cEEEECCCCHHHHHHHHHHhCCCC-cCEEEECC
Confidence 34478899999 32 322 2344677 65566653 344556666666543 78664433
No 184
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.52 E-value=0.21 Score=29.95 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=25.0
Q ss_pred eCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 40 PGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 40 ~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
..+|||+|.. . ..+- .+.|+. +--+..+.....+.+.+..+... +|.+.
T Consensus 7 s~~~Cp~C~~-a-k~~L------~~~~i~-~~~~~v~~~~~~~~~~~~~g~~~-vP~if 55 (72)
T cd03029 7 TKPGCPFCAR-A-KAAL------QENGIS-YEEIPLGKDITGRSLRAVTGAMT-VPQVF 55 (72)
T ss_pred ECCCCHHHHH-H-HHHH------HHcCCC-cEEEECCCChhHHHHHHHhCCCC-cCeEE
Confidence 3789999993 3 3222 244677 66666553333333333333321 66443
No 185
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.00 E-value=0.058 Score=33.04 Aligned_cols=56 Identities=4% Similarity=-0.070 Sum_probs=27.9
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH-HHHH-HHHHHcCCCcceEEEecCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA-FVME-AWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~-~~~~-~~~~~~~~~~~f~~~~D~~ 101 (156)
+|...|||+|.. ....|.++.. ... ++-++.++. .+.+ .+.+..+... +|.+...+
T Consensus 4 ~y~~~~Cp~C~~-~~~~l~~~~~-----~~~-~~~v~~~~~~~~~~~~~~~~~g~~~-~P~v~~~g 61 (82)
T cd03419 4 VFSKSYCPYCKR-AKSLLKELGV-----KPA-VVELDQHEDGSEIQDYLQELTGQRT-VPNVFIGG 61 (82)
T ss_pred EEEcCCCHHHHH-HHHHHHHcCC-----CcE-EEEEeCCCChHHHHHHHHHHhCCCC-CCeEEECC
Confidence 344889999993 3333333322 223 555555432 3443 3444445433 77655433
No 186
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=92.76 E-value=0.062 Score=36.06 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=53.0
Q ss_pred hhhHhCCC-eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCch
Q psy5399 25 IADAIKGK-KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 103 (156)
Q Consensus 25 l~~~~~gk-~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~ 103 (156)
|++ ++++ .+||+|-|...-+.-.. .+..|......+.++.+. ++.+..+.....- ..+. .+....
T Consensus 3 L~~-~~w~~R~lvv~aps~~d~~~~~-q~~~L~~~~~~l~eRdi~-v~~i~~~~~~~~~-----~~~~------~~~~~~ 68 (118)
T PF13778_consen 3 LDQ-FRWKNRLLVVFAPSADDPRYQQ-QLEELQNNRCGLDERDIV-VIVITGDGARSPG-----KPLS------PEDIQA 68 (118)
T ss_pred hhH-hcCcCceEEEECCCCCCHHHHH-HHHHHHhhhhccccCceE-EEEEeCCcccccc-----CcCC------HHHHHH
Confidence 566 5555 46777754443332221 134444444455556655 5656444222110 0111 111257
Q ss_pred hHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEccCCCceeecchh
Q psy5399 104 FTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTCSLVD 152 (156)
Q Consensus 104 ~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~~~~~~~~~~~~~ 152 (156)
+.+.|++.. +. .+ +++|+ ||.+...+-.+-........+|
T Consensus 69 lr~~l~~~~-----~~-f~---~vLiGKDG~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 69 LRKRLRIPP-----GG-FT---VVLIGKDGGVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred HHHHhCCCC-----Cc-eE---EEEEeCCCcEEEecCCCCCHHHHHHHHh
Confidence 778888752 11 33 78887 9999998766654444333333
No 187
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=92.70 E-value=0.32 Score=33.37 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=28.7
Q ss_pred EEecCCchhHHhhCCeeeccCCCcceeeeEEEEEeCCcEEEEEEccCC
Q psy5399 96 FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 96 ~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~~~~~~ 143 (156)
+=.|.+..++.+|||. ..|+.+++++|+++....+-.+
T Consensus 75 VDiD~~~~LA~~fgV~----------siPTLl~FkdGk~v~~i~G~~~ 112 (132)
T PRK11509 75 ADLEQSEAIGDRFGVF----------RFPATLVFTGGNYRGVLNGIHP 112 (132)
T ss_pred EECCCCHHHHHHcCCc----------cCCEEEEEECCEEEEEEeCcCC
Confidence 3356678999999994 2455788899999988877544
No 188
>KOG0191|consensus
Probab=92.55 E-value=0.21 Score=40.13 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=34.9
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH-cCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA-KGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~-~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..++.|| +.||++|+.. .|.+.++.+.+.. .++. +..+..+ .....+.+++..
T Consensus 164 ~~lv~f~-aPwc~~ck~l-~~~~~~~a~~~~~~~~v~-~~~~d~~---~~~~~~~~~~v~ 217 (383)
T KOG0191|consen 164 DWLVEFY-APWCGHCKKL-APEWEKLAKLLKSKENVE-LGKIDAT---VHKSLASRLEVR 217 (383)
T ss_pred ceEEEEe-ccccHHhhhc-ChHHHHHHHHhccCcceE-EEeeccc---hHHHHhhhhccc
Confidence 4555565 9999999965 5999999998874 4444 5555544 333444455443
No 189
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.51 E-value=0.19 Score=35.75 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=15.3
Q ss_pred eeehhhHhCCCeEEEEEeeCCCCCCCCc
Q psy5399 22 KIQIADAIKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 22 ~~~l~~~~~gk~vvl~f~~~~~cp~C~~ 49 (156)
.+..+. -.+|+++|.+. .+||.+|..
T Consensus 29 a~~~Ak-~e~KpIfl~ig-~~~C~wChv 54 (163)
T PF03190_consen 29 ALEKAK-KENKPIFLSIG-YSWCHWCHV 54 (163)
T ss_dssp HHHHHH-HHT--EEEEEE--TT-HHHHH
T ss_pred HHHHHH-hcCCcEEEEEE-ecCCcchhh
Confidence 344444 46788888776 889999985
No 190
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.45 E-value=0.12 Score=29.84 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=29.9
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH-HHHHHHHHHcCCCcceEEEe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~-~~~~~~~~~~~~~~~f~~~~ 98 (156)
.|...+||+|.. . ..+ +++.|+. .-.+..++. +..+++.+..+... +|.+.
T Consensus 3 vy~~~~C~~C~~-~-~~~------L~~~~i~-y~~~dv~~~~~~~~~l~~~~g~~~-~P~v~ 54 (60)
T PF00462_consen 3 VYTKPGCPYCKK-A-KEF------LDEKGIP-YEEVDVDEDEEAREELKELSGVRT-VPQVF 54 (60)
T ss_dssp EEESTTSHHHHH-H-HHH------HHHTTBE-EEEEEGGGSHHHHHHHHHHHSSSS-SSEEE
T ss_pred EEEcCCCcCHHH-H-HHH------HHHcCCe-eeEcccccchhHHHHHHHHcCCCc-cCEEE
Confidence 344789999993 2 222 3556777 777777654 44445555545332 77554
No 191
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.43 E-value=0.58 Score=29.52 Aligned_cols=62 Identities=16% Similarity=0.001 Sum_probs=32.3
Q ss_pred HhCCCeEEEEEeeC---CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcCCCcceEEEec
Q psy5399 28 AIKGKKVIIFGVPG---AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 28 ~~~gk~vvl~f~~~---~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
+.++++|+|+--.. +|||+|.. . . ++ +.+.++. .-.+..+ +++..+...+..+..- +|.+.-
T Consensus 4 ~i~~~~vvvf~k~~~~~~~Cp~C~~-a-k---~~---L~~~~i~-y~~idv~~~~~~~~~l~~~~g~~t-vP~vfi 69 (90)
T cd03028 4 LIKENPVVLFMKGTPEEPRCGFSRK-V-V---QI---LNQLGVD-FGTFDILEDEEVRQGLKEYSNWPT-FPQLYV 69 (90)
T ss_pred hhccCCEEEEEcCCCCCCCCcHHHH-H-H---HH---HHHcCCC-eEEEEcCCCHHHHHHHHHHhCCCC-CCEEEE
Confidence 35677788875422 46777762 2 2 22 2344676 6666654 3444444444444322 775543
No 192
>PRK10824 glutaredoxin-4; Provisional
Probab=92.36 E-value=0.5 Score=31.58 Aligned_cols=58 Identities=10% Similarity=0.044 Sum_probs=30.1
Q ss_pred hHhCCCeEEEEEeeC----CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcCCCcceE
Q psy5399 27 DAIKGKKVIIFGVPG----AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 27 ~~~~gk~vvl~f~~~----~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~~~~~f~ 95 (156)
++.+.++|+|+.- + +|||+|. .. ..+- .+.+++ .-.+..+ +++....+.+..+.+- +|
T Consensus 10 ~~I~~~~Vvvf~K-g~~~~p~Cpyc~-~a-k~lL------~~~~i~-~~~idi~~d~~~~~~l~~~sg~~T-VP 72 (115)
T PRK10824 10 RQIAENPILLYMK-GSPKLPSCGFSA-QA-VQAL------SACGER-FAYVDILQNPDIRAELPKYANWPT-FP 72 (115)
T ss_pred HHHhcCCEEEEEC-CCCCCCCCchHH-HH-HHHH------HHcCCC-ceEEEecCCHHHHHHHHHHhCCCC-CC
Confidence 3455667777754 4 4899999 33 3332 223555 4445544 3443334444445432 77
No 193
>KOG0912|consensus
Probab=92.18 E-value=0.2 Score=39.14 Aligned_cols=60 Identities=8% Similarity=-0.052 Sum_probs=36.0
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC-EEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH-EIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~-~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.-|.|.|+ ++|||+.+. -.|.+.+.++.+++.-=+ .++--++|- .+....+.++.++. ||
T Consensus 14 elvfv~Fy-AdWCrFSq~-L~piF~EAa~~~~~e~P~~kvvwg~VDc-d~e~~ia~ky~I~K-yP 74 (375)
T KOG0912|consen 14 ELVFVNFY-ADWCRFSQM-LKPIFEEAAAKFKQEFPEGKVVWGKVDC-DKEDDIADKYHINK-YP 74 (375)
T ss_pred eEEeeeee-hhhchHHHH-HhHHHHHHHHHHHHhCCCcceEEEEccc-chhhHHhhhhcccc-Cc
Confidence 44666676 999999996 479999999888754211 133223331 12234455666554 44
No 194
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=91.69 E-value=0.1 Score=35.58 Aligned_cols=31 Identities=16% Similarity=-0.044 Sum_probs=21.4
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 63 (156)
++.+|+.| ...+||+|... -+.+.++..++.
T Consensus 5 a~~~i~~f-~D~~Cp~C~~~-~~~l~~~~~~~~ 35 (154)
T cd03023 5 GDVTIVEF-FDYNCGYCKKL-APELEKLLKEDP 35 (154)
T ss_pred CCEEEEEE-ECCCChhHHHh-hHHHHHHHHHCC
Confidence 34444444 48899999965 488888776653
No 195
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=91.23 E-value=0.31 Score=32.07 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
.++++|+=. ++.||.-. ..+.+|.+.++...+. +. ++-+-.-... +-...++.+|||
T Consensus 19 ~~~~~iFKH-St~C~IS~-~a~~~~e~~~~~~~~~-~~-~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 19 EKPVLIFKH-STRCPISA-MALREFEKFWEESPDE-IP-VYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp -SEEEEEEE--TT-HHHH-HHHHHHHHHHHHHT------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred cCcEEEEEe-CCCChhhH-HHHHHHHHHhhcCCcc-ce-EEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 455555544 67777666 3466666666555432 55 5544432111 113578899999
Q ss_pred eeeccCCCcceeeeEEEEEeCCcEEEEEEc
Q psy5399 111 EHEIPVLGGWRSKRYSMVVDDGKITQLNIE 140 (156)
Q Consensus 111 ~~~~~~~~~~~~~~~~~iid~G~I~~~~~~ 140 (156)
.. -.|..++|++|+++|-...
T Consensus 76 ~H---------eSPQ~ili~~g~~v~~aSH 96 (105)
T PF11009_consen 76 KH---------ESPQVILIKNGKVVWHASH 96 (105)
T ss_dssp ------------SSEEEEEETTEEEEEEEG
T ss_pred Cc---------CCCcEEEEECCEEEEECcc
Confidence 64 3555899999999998654
No 196
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.95 E-value=0.97 Score=31.98 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=41.7
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHH---cCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKA---KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 106 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~---~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~ 106 (156)
.+|..+|.| ....|++|. . +..-..-.+++++ ..+. ++-+...+-+.. .+... -..-.-...++++
T Consensus 41 ~~Kylllmf-es~~C~yC~-~-~KKd~~~~krlrEylk~hf~-~~~l~i~~skpv-----~f~~g--~kee~~s~~ELa~ 109 (182)
T COG2143 41 NDKYLLLMF-ESNGCSYCE-R-FKKDLKNVKRLREYLKEHFS-AYYLNISYSKPV-----LFKVG--DKEEKMSTEELAQ 109 (182)
T ss_pred cCcEEEEEE-cCCCChHHH-H-HHHhhcchHHHHHHHhhCeE-EEEEEeccCcce-----EeecC--ceeeeecHHHHHH
Confidence 456666665 477899997 3 4433332333322 2233 443333221110 00011 0011112247899
Q ss_pred hhCCeeeccCCCcceeeeEEEEEe-CCcEEEE
Q psy5399 107 KLGVEHEIPVLGGWRSKRYSMVVD-DGKITQL 137 (156)
Q Consensus 107 ~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~ 137 (156)
.|++. ++|+.+..| +|+-+.-
T Consensus 110 kf~vr----------stPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 110 KFAVR----------STPTFVFFDKTGKTILE 131 (182)
T ss_pred Hhccc----------cCceEEEEcCCCCEEEe
Confidence 99984 355567778 8765543
No 197
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=90.39 E-value=0.48 Score=31.40 Aligned_cols=64 Identities=8% Similarity=-0.006 Sum_probs=43.0
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--C--CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--N--DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
+|...+|+.|+. .. +.+.+.|+. +-.+.. + +.+++++|++..+.+ +.-+....+..++.++...
T Consensus 4 iY~~~~C~~c~k-a~-------~~L~~~gi~-~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 4 LYTSPSCSSCRK-AK-------QWLEEHQIP-FEERNLFKQPLTKEELKEILSLTENG--VEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEeCCCCHHHHH-HH-------HHHHHCCCc-eEEEecCCCcchHHHHHHHHHHhcCC--HHHHHhcCcHHHHHcCCCc
Confidence 455778999983 32 333455777 665654 2 578899999999766 6655556777888877543
No 198
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=90.12 E-value=0.41 Score=32.63 Aligned_cols=65 Identities=11% Similarity=-0.000 Sum_probs=42.6
Q ss_pred EEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 37 FGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 37 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
.+|...+|+.|+. .+ +.+.+.|+. +-.+.. .+.+++.+|++..+.+ +.-+....+..++.++...
T Consensus 3 ~iY~~~~C~~C~k-a~-------~~L~~~gi~-~~~idi~~~~~~~~eL~~~l~~~~~g--~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 3 TLFTSPSCTSCRK-AK-------AWLEEHDIP-FTERNIFSSPLTIDEIKQILRMTEDG--TDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEeCCCChHHHH-HH-------HHHHHcCCC-cEEeeccCChhhHHHHHHHHHHhcCC--HHHHHhcCcHHHHhCCCCc
Confidence 3455788999993 32 334555777 655543 2468889999998766 5544556677777776654
No 199
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=89.83 E-value=0.64 Score=31.01 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=13.8
Q ss_pred hCCCeEEEEEeeCC----CCCCCC
Q psy5399 29 IKGKKVIIFGVPGA----FTPGCS 48 (156)
Q Consensus 29 ~~gk~vvl~f~~~~----~cp~C~ 48 (156)
-.+|.++|+++ +. ||-+|+
T Consensus 15 ~e~K~llVylh-s~~~~~~~~fc~ 37 (116)
T cd02991 15 QELRFLLVYLH-GDDHQDTDEFCR 37 (116)
T ss_pred hhCCEEEEEEe-CCCCccHHHHHH
Confidence 36788888888 55 666775
No 200
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=89.56 E-value=0.49 Score=30.71 Aligned_cols=63 Identities=16% Similarity=0.028 Sum_probs=39.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
+|..++||+|+ ... +.+++.|+. +-.+.. .+.+.++++..+.+.+ +.-+....+..++..+..
T Consensus 3 iY~~~~C~~c~-ka~-------~~L~~~~i~-~~~idi~~~~~~~~~l~~~~~~~~~~--~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 3 IYGNPNCSTSR-KAL-------AWLEEHGIE-YEFIDYLKEPPTKEELKELLAKLGLG--VEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEECCCCHHHH-HHH-------HHHHHcCCC-cEEEeeccCCCCHHHHHHHHHhcCCC--HHHHHhcCCchHHHcCCc
Confidence 45578899999 332 233445666 555543 3578889999888865 444444555666666654
No 201
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=89.12 E-value=0.72 Score=30.63 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=40.9
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC----CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d----~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv 110 (156)
+|..++||.|+. .. +.+.+.|+. +-.+... +.+++.++++..+.+ +.-+....+..++.++.
T Consensus 3 iY~~~~C~~c~k-a~-------~~L~~~~i~-~~~idi~~~~~~~~el~~l~~~~~~~--~~~lin~~~~~~k~l~~ 68 (117)
T TIGR01617 3 VYGSPNCTTCKK-AR-------RWLEANGIE-YQFIDIGEDGPTREELLDILSLLEDG--IDPLLNTRGQSYRALNT 68 (117)
T ss_pred EEeCCCCHHHHH-HH-------HHHHHcCCc-eEEEecCCChhhHHHHHHHHHHcCCC--HHHheeCCCcchhhCCc
Confidence 444778999993 32 223445777 6555542 467788999999976 65455566777788775
No 202
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=88.82 E-value=0.54 Score=31.00 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=38.5
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
+|..++||.|+. .. +.+.+.|+. +-.+.. .+.+++++|.+..+.+ +.-+....+..++.++..
T Consensus 3 iY~~~~C~~c~k-a~-------~~L~~~~i~-~~~idi~~~~~~~~el~~~~~~~~~~--~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 3 FYEYPKCSTCRK-AK-------KWLDEHGVD-YTAIDIVEEPPSKEELKKWLEKSGLP--LKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEECCCCHHHHH-HH-------HHHHHcCCc-eEEecccCCcccHHHHHHHHHHcCCC--HHHHHhcCCchHHhCCcc
Confidence 445778999993 32 233445676 555543 3568889999998875 433333445566666554
No 203
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=88.21 E-value=0.65 Score=32.55 Aligned_cols=31 Identities=29% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHH
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 62 (156)
.++..|+.|+ ...||+|...+ +.+.++.+++
T Consensus 14 ~~~~~i~~f~-D~~Cp~C~~~~-~~~~~~~~~~ 44 (178)
T cd03019 14 SGKPEVIEFF-SYGCPHCYNFE-PILEAWVKKL 44 (178)
T ss_pred CCCcEEEEEE-CCCCcchhhhh-HHHHHHHHhC
Confidence 3555566655 77899999765 8888888877
No 204
>PRK12559 transcriptional regulator Spx; Provisional
Probab=86.55 E-value=1.2 Score=30.38 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=41.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
+|..++|+.|+. ++ +.+.+.|+. +-.+.. -+.+++++|++..+.+ +.-+....+..++.++...
T Consensus 4 iY~~~~C~~crk-A~-------~~L~~~gi~-~~~~di~~~~~s~~el~~~l~~~~~g--~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 4 LYTTASCASCRK-AK-------AWLEENQID-YTEKNIVSNSMTVDELKSILRLTEEG--ATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEeCCCChHHHH-HH-------HHHHHcCCC-eEEEEeeCCcCCHHHHHHHHHHcCCC--HHHHHhcCcHHHHhCCCCc
Confidence 455778999983 32 334555777 555543 3679999999997766 4444445667778777653
No 205
>KOG0914|consensus
Probab=86.36 E-value=1.6 Score=32.66 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=26.4
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
.-+|-|| +.|.|-|+.. .|-+.++..+|...+..
T Consensus 146 ~WlIeFf-a~ws~~Cv~~-spvfaeLS~kyn~~~lk 179 (265)
T KOG0914|consen 146 YWLIEFF-ACWSPKCVRF-SPVFAELSIKYNNNLLK 179 (265)
T ss_pred EEEEEEE-eecChhhccc-ccccHHHHHHhCCCCCc
Confidence 3556666 8999999965 69999999999755544
No 206
>PRK06184 hypothetical protein; Provisional
Probab=86.11 E-value=6.7 Score=32.56 Aligned_cols=92 Identities=21% Similarity=0.248 Sum_probs=61.0
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhC-CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIK-GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~-gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
+.+|..+|+..+. ..+|++.++-|++. +++++|.|-...| ... ...++. ++.+..+.
T Consensus 386 ~~~G~r~p~~~~~-~~~~~~~~l~d~~~~~~~~ll~~~~~~~---------~~~-------~~~~~~-~~~~~~~~---- 443 (502)
T PRK06184 386 LRAGDRAPDAPLL-GAAGQPTRLFDLFRGPHWTLLAFGAGAA---------AIL-------ARRGLR-IHRVGDAA---- 443 (502)
T ss_pred CCCcCCCCCchhc-cCCCceeeHHHhhCCCcEEEEEecCCch---------hhh-------hhcCce-EEEecccC----
Confidence 4689999999987 56888889999776 4677776521111 100 123455 65554321
Q ss_pred HHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEE
Q psy5399 82 EAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 138 (156)
Q Consensus 82 ~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~ 138 (156)
. ...+.|.++.+...|++.. .. .+|+. ||-|.+..
T Consensus 444 ---------~--~~~~~d~~g~~~~~~~~~~--------~~---~~lvRPDg~v~~~~ 479 (502)
T PRK06184 444 ---------E--GGDLVDDAGHFRDAYGLTG--------GT---LVLVRPDGYVGLIA 479 (502)
T ss_pred ---------C--CCceeCCCccHHHHhcCCC--------Cc---EEEECCCcceEEEe
Confidence 2 3346899999999999853 12 68886 99998874
No 207
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=85.96 E-value=0.31 Score=33.60 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=29.9
Q ss_pred ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH-HcCCCEEEEEe
Q psy5399 21 TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK-AKGIHEIFCIA 74 (156)
Q Consensus 21 ~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~-~~~~~~v~~is 74 (156)
..+.+++ -..+.+|+.|+ ...||+|... -+.+.++.+++- +..+. ++...
T Consensus 3 ~~~~~G~-~~a~~~v~~f~-d~~Cp~C~~~-~~~~~~~~~~~i~~~~v~-~~~~~ 53 (162)
T PF13462_consen 3 YDPTIGN-PDAPITVTEFF-DFQCPHCAKF-HEELEKLLKKYIDPGKVK-FVFRP 53 (162)
T ss_dssp TSEEES--TTTSEEEEEEE--TTSHHHHHH-HHHHHHHHHHHTTTTTEE-EEEEE
T ss_pred CCCeecC-CCCCeEEEEEE-CCCCHhHHHH-HHHHhhhhhhccCCCceE-EEEEE
Confidence 3445666 34555555554 7789999965 488888888872 22344 55443
No 208
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=85.79 E-value=1.6 Score=29.86 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=42.8
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
+|..++|+.|+. + .+.+.+.|+. +-.+.. -+.+++++|++..+.+ +.-+....+..++.++...
T Consensus 4 iY~~~~C~~crk-A-------~~~L~~~~i~-~~~~d~~~~~~s~~eL~~~l~~~~~~--~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 4 IYTISSCTSCKK-A-------KTWLNAHQLS-YKEQNLGKEPLTKEEILAILTKTENG--IESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEeCCCCHHHHH-H-------HHHHHHcCCC-eEEEECCCCCCCHHHHHHHHHHhCCC--HHHhhccCcHHHHhCCcch
Confidence 444677999983 3 2334555777 655543 3678999999998876 6545556677777777543
No 209
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=85.72 E-value=3.6 Score=29.40 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=45.2
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|-.-+|.-.--+--|+-.-+..|++..+..+.++.|+. ++.+|-+++...+.|++..+++
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~-v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK-VVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE-EEEEeCCCHHHHHhhhhhcCCc
Confidence 354444443322234444445569999999999999999 9999999999999999998876
No 210
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=85.62 E-value=2.2 Score=36.79 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=71.6
Q ss_pred ccCCCcCCcceecccCCCceeehhhHh--CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc-----------C---
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAI--KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK-----------G--- 66 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~--~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~-----------~--- 66 (156)
+.+|..+|++.+..-.+++++.|.+.+ .|++.||.|-...-.+. .+..+..+.+.+.+. +
T Consensus 463 ~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 538 (634)
T PRK08294 463 FPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAG----PGSALDALCEFLAESPDSPLRRFTPSGADI 538 (634)
T ss_pred CCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcch----hHHHHHHHHHHHhhCccchHhhcCCCCCCC
Confidence 678999999999855688888887654 57888888752221222 245555555555211 1
Q ss_pred ---CCEEEEEecC---------CHHHHHHHHHHcCCCcceE-EEecC--CchhHHhhCCeeeccCCCcceeeeEEEEEe-
Q psy5399 67 ---IHEIFCIAVN---------DAFVMEAWCRKNNAEGKIR-FLADP--NLEFTKKLGVEHEIPVLGGWRSKRYSMVVD- 130 (156)
Q Consensus 67 ---~~~v~~is~d---------~~~~~~~~~~~~~~~~~f~-~~~D~--~~~~~~~~gv~~~~~~~~~~~~~~~~~iid- 130 (156)
++ ++.|... -|+..+.+....++.. |. ++.|. .....+.||+..+ .-+.+|+.
T Consensus 539 ~~~~~-~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi~~~---------~g~~vvvRP 607 (634)
T PRK08294 539 DAVID-VRAIFQQPHRELDLEDVPALLLPRKGRFGLTD-YEKVFCADLSGADIFDLRGIDRD---------RGAVVVVRP 607 (634)
T ss_pred CcEEE-EEEEecCCCCccchhhCcHhhCCcccccCccc-hhheecCCCchhhHHHhhCCCCC---------ceeEEEECC
Confidence 22 5555443 1344444445555521 43 55553 2467788888532 33477776
Q ss_pred CCcEEEEE
Q psy5399 131 DGKITQLN 138 (156)
Q Consensus 131 ~G~I~~~~ 138 (156)
||-|-++.
T Consensus 608 D~~v~~~~ 615 (634)
T PRK08294 608 DQYVANVL 615 (634)
T ss_pred CCceEEEe
Confidence 99888764
No 211
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=85.15 E-value=5.9 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=43.4
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
..=|++.++++++.++. -+.++.++.+.+++..+-- .. .+++......+++++|+.
T Consensus 37 ~~WL~~~~~~L~~l~Av-GlVVnV~t~~~l~~Lr~la-pg--l~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 37 RQWLQQNAAALKSLGAV-GLVVNVETAAALQRLRALA-PG--LPLLPVSGDDLAERLGLR 92 (105)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCHHHHHHHHHHc-CC--CcccCCCHHHHHHHhCCC
Confidence 45577888899998888 7889999998888765544 33 666666667899999985
No 212
>PTZ00062 glutaredoxin; Provisional
Probab=84.95 E-value=4.3 Score=29.90 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=33.4
Q ss_pred hhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEE
Q psy5399 25 IADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 25 l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~ 97 (156)
+..+...++|+|+--..++||.|. . .....++. ++.++. ...+..+. ++..+...+..+.+- +|.+
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~-~-C~~~k~~L---~~~~i~-y~~~DI~~d~~~~~~l~~~sg~~T-vPqV 172 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCR-F-SNAVVNML---NSSGVK-YETYNIFEDPDLREELKVYSNWPT-YPQL 172 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCh-h-HHHHHHHH---HHcCCC-EEEEEcCCCHHHHHHHHHHhCCCC-CCeE
Confidence 344556778888876334444444 1 12333333 344777 66666653 333344444445432 6633
No 213
>KOG1752|consensus
Probab=84.10 E-value=4.2 Score=26.66 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=14.0
Q ss_pred hCCCeEEEEEeeCCCCCCCCc
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~ 49 (156)
...++||++. .+|||+|..
T Consensus 11 i~~~~VVifS--Ks~C~~c~~ 29 (104)
T KOG1752|consen 11 ISENPVVIFS--KSSCPYCHR 29 (104)
T ss_pred hhcCCEEEEE--CCcCchHHH
Confidence 4566777765 689999993
No 214
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=82.68 E-value=9.1 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=43.6
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
..=|++..+++++.++. =+.|+.++.+.+++..+-- .. .+++-.....+++++|+.
T Consensus 75 ~~WL~~~~~~L~~l~Av-GlVVNV~t~~~L~~Lr~la-pg--l~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 75 RQWLQQNAEELKQLGAV-GLVVNVATEAALQRLRQLA-PG--LPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEecCCHHHHHHHHHHc-CC--CeecCCCHHHHHHHhCCC
Confidence 34567788889998888 7889999999888865544 34 666666677899999995
No 215
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=81.50 E-value=9.3 Score=23.04 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEeCCcEEE
Q psy5399 79 FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQ 136 (156)
Q Consensus 79 ~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~ 136 (156)
...++++++++.. +.++.=.+...+.+||+.. .|+.++ ||+++.
T Consensus 18 ~~~~~~~~e~~~~--~~~~~v~~~~~a~~~~v~~----------vPti~i--~G~~~~ 61 (76)
T TIGR00412 18 KNVKKAVEELGID--AEFEKVTDMNEILEAGVTA----------TPGVAV--DGELVI 61 (76)
T ss_pred HHHHHHHHHcCCC--eEEEEeCCHHHHHHcCCCc----------CCEEEE--CCEEEE
Confidence 4457788888876 6654333455577888842 333444 888773
No 216
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=81.33 E-value=2.9 Score=32.10 Aligned_cols=40 Identities=10% Similarity=0.103 Sum_probs=26.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
+.+|||+|| -..++.|... -..|..++.+|. .+. ++-|..
T Consensus 146 ~~~VVVHiY-~~~~~~C~~m-n~~L~~LA~kyp--~vK-FvkI~a 185 (265)
T PF02114_consen 146 STWVVVHIY-EPGFPRCEIM-NSCLECLARKYP--EVK-FVKIRA 185 (265)
T ss_dssp T-EEEEEEE--TTSCCHHHH-HHHHHHHHHH-T--TSE-EEEEEE
T ss_pred CcEEEEEEE-eCCCchHHHH-HHHHHHHHHhCC--ceE-EEEEeh
Confidence 446888887 6679999975 477888888887 455 655543
No 217
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.70 E-value=3.5 Score=24.30 Aligned_cols=52 Identities=13% Similarity=-0.003 Sum_probs=25.4
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCC-EEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIH-EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~-~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
|...|||+|.. ... .+..+|+. +++-+.... ...++.+.+... ..|++.+.+
T Consensus 4 y~~~~~p~~~r--v~~------~L~~~gl~~e~~~v~~~~--~~~~~~~~np~~-~vP~L~~~~ 56 (71)
T cd03060 4 YSFRRCPYAMR--ARM------ALLLAGITVELREVELKN--KPAEMLAASPKG-TVPVLVLGN 56 (71)
T ss_pred EecCCCcHHHH--HHH------HHHHcCCCcEEEEeCCCC--CCHHHHHHCCCC-CCCEEEECC
Confidence 44668999983 211 12233444 144444322 123454444443 388887653
No 218
>KOG4277|consensus
Probab=80.34 E-value=2.2 Score=33.52 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=22.3
Q ss_pred EEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 34 VIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 34 vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
-++-|| ++||.+|..-+ |...+.--++++.|..
T Consensus 46 W~VdFY-APWC~HCKkLe-PiWdeVG~elkdig~P 78 (468)
T KOG4277|consen 46 WFVDFY-APWCAHCKKLE-PIWDEVGHELKDIGLP 78 (468)
T ss_pred EEEEee-chhhhhccccc-chhHHhCcchhhcCCc
Confidence 344555 99999999765 7766665555655554
No 219
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=77.10 E-value=9.5 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=19.0
Q ss_pred ceeehhhHhCC-CeEEEEEeeCCC-CCCCCcCCh
Q psy5399 21 TKIQIADAIKG-KKVIIFGVPGAF-TPGCSVTHL 52 (156)
Q Consensus 21 ~~~~l~~~~~g-k~vvl~f~~~~~-cp~C~~~~l 52 (156)
+++++.+ +.| ..++|++..+++ |++|+..++
T Consensus 25 e~~~~~d-~~g~~~~~vf~~GCnlrC~~C~N~~~ 57 (260)
T COG1180 25 EKKPLVD-GPGSIRLSVFLQGCNLRCPYCQNPEI 57 (260)
T ss_pred cccCCcC-CCCcEEEEEEeCCCCCCCCCCCChhH
Confidence 3466666 566 445555555555 999985443
No 220
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=76.92 E-value=16 Score=30.78 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=61.6
Q ss_pred ccCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHH
Q psy5399 3 AQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 82 (156)
Q Consensus 3 l~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~ 82 (156)
+.+|..+|+.-+. .+|+..++-|++.++++||.|-.. ..+ ....+.. .....++. ++.+..+...
T Consensus 427 ~~pG~r~p~~~~~--~~~~~~~l~dl~g~~f~ll~~~~~--~~~------~~~~~~~-~~~~~~~~-~~~~~~~~~~--- 491 (547)
T PRK08132 427 PVPGAPAPDAPVR--ADGEPGWLLDLLGGGFTLLLFGDD--AAA------AALLQAL-AAAALPVR-VVAVVPAGAA--- 491 (547)
T ss_pred CCCCCCCCCCccc--CCCCceEHHHhcCCCEEEEEecCC--chh------hhhhhhh-hccCCceE-EEEEecCccc---
Confidence 4589999999886 467788999977666677766321 111 1111111 11222333 5555443211
Q ss_pred HHHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEE
Q psy5399 83 AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 139 (156)
Q Consensus 83 ~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~ 139 (156)
..+ ...+.|.++.+++.||+.. .. .+|+. ||-|.+..-
T Consensus 492 ------~~~--~~~~~d~~~~~~~~~~~~~--------~~---~~LvRPDg~va~~~~ 530 (547)
T PRK08132 492 ------QAA--AGVLEDADGLAAERYDARP--------GT---VYLIRPDQHVAARWR 530 (547)
T ss_pred ------ccC--cccccCcccHHHHHhCCCC--------Ce---EEEECCCceEEEEec
Confidence 112 4456899999999999852 12 68886 999988753
No 221
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=76.88 E-value=5.3 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=19.4
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
|..+|||+|.. . ..+ +.+.|+. .-.|..+...
T Consensus 7 ys~~~Cp~C~~-a-K~~------L~~~gi~-~~~idi~~~~ 38 (410)
T PRK12759 7 YTKTNCPFCDL-A-KSW------FGANDIP-FTQISLDDDV 38 (410)
T ss_pred EeCCCCHHHHH-H-HHH------HHHCCCC-eEEEECCCCh
Confidence 34889999993 2 332 2345777 6666665333
No 222
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=75.82 E-value=1.7 Score=31.84 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=25.6
Q ss_pred CCceeehh-hHhCCCeEEEEEeeCCCCCCCCcCChhhH---HHhHHHHH
Q psy5399 19 PQTKIQIA-DAIKGKKVIIFGVPGAFTPGCSVTHLPGY---LAKEKDLK 63 (156)
Q Consensus 19 ~g~~~~l~-~~~~gk~vvl~f~~~~~cp~C~~~~l~~l---~~~~~~~~ 63 (156)
+|+.++.- .-..|++.|+.|| ...||+|...+ +.+ ..+.+.+.
T Consensus 24 ~G~~Y~~~~~p~~~~~~VvEff-dy~CphC~~~~-~~l~~~~~~~~~~~ 70 (207)
T PRK10954 24 DGKQYTTLDKPVAGEPQVLEFF-SFYCPHCYQFE-EVYHVSDNVKKKLP 70 (207)
T ss_pred CCceeEEecCcCCCCCeEEEEe-CCCCccHHHhc-ccccchHHHHHhCC
Confidence 46544432 2235788777777 66699999654 444 44454443
No 223
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=73.77 E-value=3.4 Score=30.29 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=44.1
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEE-ecCCHHHHHHHHHHcCCCc------ceEEEecCCchhH
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCI-AVNDAFVMEAWCRKNNAEG------KIRFLADPNLEFT 105 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~i-s~d~~~~~~~~~~~~~~~~------~f~~~~D~~~~~~ 105 (156)
..+.+|.- ..|+.|... +..+.. ....++ |+.| |..+.+.+++|+..++++. ..++=.| .--.
T Consensus 110 ~rlalFvk-d~C~~C~~~-~~~l~a-----~~~~~D-iylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD--~G~w 179 (200)
T TIGR03759 110 GRLALFVK-DDCVACDAR-VQRLLA-----DNAPLD-LYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHD--NGRW 179 (200)
T ss_pred CeEEEEeC-CCChHHHHH-HHHHhc-----CCCcee-EEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecC--cchH
Confidence 35666664 789999842 444422 244677 7777 4678999999999999872 1333333 3345
Q ss_pred HhhCC
Q psy5399 106 KKLGV 110 (156)
Q Consensus 106 ~~~gv 110 (156)
..||+
T Consensus 180 ~~lg~ 184 (200)
T TIGR03759 180 LQLGL 184 (200)
T ss_pred HHccC
Confidence 66776
No 224
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.72 E-value=2.2 Score=36.07 Aligned_cols=28 Identities=14% Similarity=-0.138 Sum_probs=18.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKE 59 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~ 59 (156)
.+++.|-.|-+.+||+|. .....+++++
T Consensus 475 ~~~~~i~v~~~~~C~~Cp-~~~~~~~~~~ 502 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCP-DVVLAAQRIA 502 (555)
T ss_pred CCCeEEEEEECCCCCCcH-HHHHHHHHHH
Confidence 356767666699999999 3344444444
No 225
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=71.74 E-value=9.5 Score=24.82 Aligned_cols=61 Identities=21% Similarity=0.091 Sum_probs=36.2
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--C--CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--N--DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
+|.-++|+.|+. ++ +.+.+.|+. +-.+.. + +.+++++|.++.|.. .+++ ..+..++.++..
T Consensus 3 iy~~~~C~~crk-a~-------~~L~~~~i~-~~~~di~~~p~s~~eL~~~l~~~g~~---~li~-~~~~~yk~l~l~ 67 (105)
T cd03035 3 LYGIKNCDTVKK-AR-------KWLEARGVA-YTFHDYRKDGLDAATLERWLAKVGWE---TLLN-KRGTTWRKLDDA 67 (105)
T ss_pred EEeCCCCHHHHH-HH-------HHHHHcCCC-eEEEecccCCCCHHHHHHHHHHhChH---HHHc-cCchHHHhCChh
Confidence 455778999983 32 333455676 544443 2 679999999988732 2222 345566665554
No 226
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=71.31 E-value=2.7 Score=25.63 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=18.9
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
+|....||+|... -+.+.++.... ..++.
T Consensus 3 ~f~d~~Cp~C~~~-~~~l~~~~~~~-~~~~~ 31 (98)
T cd02972 3 EFFDPLCPYCYLF-EPELEKLLYAD-DGGVR 31 (98)
T ss_pred EEECCCCHhHHhh-hHHHHHHHhhc-CCcEE
Confidence 3448889999965 48888876333 33444
No 227
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=71.27 E-value=28 Score=26.89 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=52.3
Q ss_pred CcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcC-ChhhHHHhHHHHH--HcCCCEEEEEecCCHHHHHH
Q psy5399 7 DTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVT-HLPGYLAKEKDLK--AKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 7 ~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~-~l~~l~~~~~~~~--~~~~~~v~~is~d~~~~~~~ 83 (156)
+.+|-|++. +.+|..+-.+. -.|+.++-.|+ ++.+ +-..+.++...-+ ..++. |..||.+...+++
T Consensus 80 ~~VPVFtIt-n~~G~pvl~s~-~~~~~~~gvf~-------s~qedA~afL~~lk~~~p~l~~~~k-V~pvsL~~vYkl~- 148 (270)
T TIGR00995 80 AGTSVFTVS-NAQNEFVLASD-NDGEKSIGLLC-------FRQEDAEAFLAQLRKRKPEVGSQAK-VVPITLDQVYKLK- 148 (270)
T ss_pred cCCceEEEE-cCCCCeEEEEC-CCCCceEEEEE-------CCHHHHHHHHHHHHhhCccccCCce-EEEEEHHHHHHHh-
Confidence 358999999 79999998886 34544544443 1211 1122222222212 23566 9999998776552
Q ss_pred HHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 84 WCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 84 ~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
..++. |.++.|+. ++..+.++.
T Consensus 149 ---~e~l~--F~fiP~~~-qV~~A~~ll 170 (270)
T TIGR00995 149 ---VEGIG--FRFLPDPA-QIKNALELP 170 (270)
T ss_pred ---hcCcc--EEEeCCHH-HHHHHHHHH
Confidence 34477 99999975 444454444
No 228
>KOG0911|consensus
Probab=70.61 E-value=5.3 Score=29.86 Aligned_cols=43 Identities=9% Similarity=0.129 Sum_probs=30.3
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND 77 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~ 77 (156)
+++..+++|| +.||..|. + |.++.....++. .+++ ++-+..+.
T Consensus 16 ~~~~~~~~f~-a~wa~~~~-q-~~~v~~~~~~~~-~~~~-~~k~~a~~ 58 (227)
T KOG0911|consen 16 KGKLLVLHFW-AIWAVVQK-Q-MDQVFDHLAEYF-KNAQ-FLKLEAEE 58 (227)
T ss_pred ccchhhhhhh-hhhhhhhh-h-HHHHHHHHHHhh-hhhe-eeeehhhh
Confidence 5677888887 99999999 4 777777666665 4555 55554443
No 229
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=70.20 E-value=1.6 Score=26.88 Aligned_cols=56 Identities=7% Similarity=-0.110 Sum_probs=34.7
Q ss_pred EEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 36 IFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 36 l~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
|.+|....|+.|. +....|.++. .+.++. +-.|..++.++ |.++++.. .|++.-.+
T Consensus 2 l~l~~k~~C~LC~-~a~~~L~~~~---~~~~~~-l~~vDI~~d~~---l~~~Y~~~--IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCD-EAKEILEEVA---AEFPFE-LEEVDIDEDPE---LFEKYGYR--IPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHH-HHHHHHHHCC---TTSTCE-EEEEETTTTHH---HHHHSCTS--TSEEEETT
T ss_pred EEEEcCCCCChHH-HHHHHHHHHH---hhcCce-EEEEECCCCHH---HHHHhcCC--CCEEEEcC
Confidence 4556577799998 3333333333 233566 88888875443 77799998 78766544
No 230
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=70.11 E-value=8 Score=30.28 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=24.0
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCC--CEEEEEe
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGI--HEIFCIA 74 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~--~~v~~is 74 (156)
.+-.|||.|- . -..++.+.+.+.+.++ ++++.+|
T Consensus 16 ~~~~~CpGCg-~-~~i~~~i~~al~~l~l~p~d~vivs 51 (301)
T PRK05778 16 LPTTWCPGCG-N-FGILNAIIQALAELGLDPDKVVVVS 51 (301)
T ss_pred CCCCCCCCCC-C-hHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4667999999 3 5888888888877644 1255454
No 231
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=67.86 E-value=23 Score=21.09 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=25.5
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCCcceEEEecC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADP 100 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~~~f~~~~D~ 100 (156)
|...+||+|.. .. ..+.+.|+. .-.+..+. .....++.+.++.. .+|++.|.
T Consensus 5 y~~~~sp~~~k--v~------~~L~~~gi~-y~~~~v~~~~~~~~~~~~~~p~~-~vP~l~~~ 57 (77)
T cd03041 5 YEFEGSPFCRL--VR------EVLTELELD-VILYPCPKGSPKRDKFLEKGGKV-QVPYLVDP 57 (77)
T ss_pred ecCCCCchHHH--HH------HHHHHcCCc-EEEEECCCChHHHHHHHHhCCCC-cccEEEeC
Confidence 33567898883 21 122344565 32233332 22334555554443 38888764
No 232
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=66.73 E-value=33 Score=23.53 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=24.1
Q ss_pred eEEEecCCchh---HHhhCCeeeccCCCcceeeeEEEEEeCCcEEEEE
Q psy5399 94 IRFLADPNLEF---TKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLN 138 (156)
Q Consensus 94 f~~~~D~~~~~---~~~~gv~~~~~~~~~~~~~~~~~iid~G~I~~~~ 138 (156)
+.++...|... +|.|=. +.+|+.|++-|++||++++..
T Consensus 71 vTVFAGqDkEAt~~aR~yf~-------~~pPSSPS~ALfKdGelvh~i 111 (136)
T PF06491_consen 71 VTVFAGQDKEATAKAREYFE-------PYPPSSPSIALFKDGELVHFI 111 (136)
T ss_dssp EEEETTTSHHHHHHHHHTST-------TS---SSEEEEEETTEEEEEE
T ss_pred EEeccCCCHHHHHHHHHhcC-------CCCCCCchheeeeCCEEEEEe
Confidence 66666666433 333322 567889999999999999984
No 233
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=66.12 E-value=38 Score=28.42 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=61.3
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHH
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 83 (156)
.+|+.+|+..+. +.+|..-.+.++..+++++|.| +. -|... +. ....+.+...+.. ++.+.......
T Consensus 412 ~~G~~~p~~~~~-~~~~~~~~~d~~~~~~~~ll~~--~~-~~~~~---~~--~~~~~~~~~~~~~-~~~~~~~~~~~--- 478 (538)
T PRK06183 412 PVGTLFPQPRVE-LGGGDRGLLDDVLGPGFAVLGW--GC-DPLAG---LS--DEQRARWRALGAR-FVQVVPAVQAH--- 478 (538)
T ss_pred CcccCcCCCeeE-cCCCCcccchhccCCceEEEEe--cC-Cchhc---CC--HHHHHHHHHcCCe-EEEEecccccc---
Confidence 479999999887 4555444455544445677765 21 12222 21 1112224556777 77776542211
Q ss_pred HHHHcCCCcceEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEE
Q psy5399 84 WCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQL 137 (156)
Q Consensus 84 ~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~ 137 (156)
.-. .+.+.|.++.+++.|+... .. .+|+. |+-|-..
T Consensus 479 -----~~~--~~~~~d~~g~~~~~~~~~~--------~~---~~lvRPD~~v~~~ 515 (538)
T PRK06183 479 -----TAQ--DDHDSDVDGALRAWLARHG--------AS---AVLLRPDRYVAAA 515 (538)
T ss_pred -----cCC--CceeecCCchHHHHHHhCC--------CE---EEEECCCEEEEEe
Confidence 023 6678999999999998742 12 68886 9988754
No 234
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=65.61 E-value=7.4 Score=29.64 Aligned_cols=30 Identities=13% Similarity=0.061 Sum_probs=18.7
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~ 62 (156)
|| +.++|...-|||+|..+. =.|-....+|
T Consensus 58 Gk-~~v~~igw~gCP~~A~~s-W~L~~ALsrf 87 (249)
T PF06053_consen 58 GK-PEVIFIGWEGCPYCAAES-WALYIALSRF 87 (249)
T ss_pred Ce-eEEEEEecccCccchhhH-HHHHHHHHhc
Confidence 55 566666788999999643 3343444444
No 235
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=64.55 E-value=21 Score=23.41 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=32.8
Q ss_pred ceeehhhHhCC-CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 21 TKIQIADAIKG-KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 21 ~~~~l~~~~~g-k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
+.=.+++ +.+ ..-++-|+ .|..|. -..+....+++.+.|++ ++++|.
T Consensus 26 r~g~F~~-y~~~~~elvgf~---~CgGCp---g~~~~~~~~~l~~~~~d-~IHlss 73 (107)
T PF08821_consen 26 RKGAFAR-YDDEDVELVGFF---TCGGCP---GRKLVRRIKKLKKNGAD-VIHLSS 73 (107)
T ss_pred ccCcccc-CCCCCeEEEEEe---eCCCCC---hhHHHHHHHHHHHCCCC-EEEEcC
Confidence 3444556 454 34555565 477777 26888888899999999 999975
No 236
>PHA02762 hypothetical protein; Provisional
Probab=63.49 E-value=13 Score=21.25 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=14.8
Q ss_pred EEEEe-CCcEEEEEEccCC
Q psy5399 126 SMVVD-DGKITQLNIEPDG 143 (156)
Q Consensus 126 ~~iid-~G~I~~~~~~~~~ 143 (156)
|+=|| +|+|.|+.++|..
T Consensus 31 tigide~g~iayisiep~d 49 (62)
T PHA02762 31 TIGIDENDKISYISIEPLD 49 (62)
T ss_pred EEeECCCCcEEEEEecccc
Confidence 56678 9999999998754
No 237
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=63.30 E-value=56 Score=26.12 Aligned_cols=93 Identities=18% Similarity=0.170 Sum_probs=55.8
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-----HHHHHHHHHHcCCCc-ceEEEecCCch
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-----AFVMEAWCRKNNAEG-KIRFLADPNLE 103 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-----~~~~~~~~~~~~~~~-~f~~~~D~~~~ 103 (156)
.++|.|+.|. |- -..-. . -.+.+++..|.+.|.. |+-...|+ .+.++.|.++.+.+. ..+.-+||...
T Consensus 136 ~~~p~Vil~v-GV-NG~GK--T-TTIaKLA~~l~~~g~~-VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 136 EKKPFVILFV-GV-NGVGK--T-TTIAKLAKYLKQQGKS-VLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred CCCcEEEEEE-ec-CCCch--H-hHHHHHHHHHHHCCCe-EEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHH
Confidence 3568777776 32 22233 2 4778888888999998 88888886 466778999887652 01134555433
Q ss_pred hHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEE
Q psy5399 104 FTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQ 136 (156)
Q Consensus 104 ~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~ 136 (156)
+..+..-. ...+.. .+||| .||...
T Consensus 210 afDAi~~A---kar~~D-----vvliDTAGRLhn 235 (340)
T COG0552 210 AFDAIQAA---KARGID-----VVLIDTAGRLHN 235 (340)
T ss_pred HHHHHHHH---HHcCCC-----EEEEeCcccccC
Confidence 33332211 111222 57778 998653
No 238
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=63.19 E-value=8.7 Score=27.20 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=21.1
Q ss_pred EEEeeCCCCCCCCcCChhhHHHhHHHH
Q psy5399 36 IFGVPGAFTPGCSVTHLPGYLAKEKDL 62 (156)
Q Consensus 36 l~f~~~~~cp~C~~~~l~~l~~~~~~~ 62 (156)
|.||....||+|-.- .+.+.++.+++
T Consensus 3 i~~~~D~~cp~c~~~-~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGF-EPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCc-hHHHHHHHHHh
Confidence 445558889999965 59999999888
No 239
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=62.88 E-value=9.3 Score=23.03 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=12.1
Q ss_pred CCCCCCCCcCChhhHHHhHHH
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKD 61 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~ 61 (156)
+++||.|.. ....+++...+
T Consensus 7 ~~~C~~C~~-~~~~~~~~~~~ 26 (76)
T PF13192_consen 7 SPGCPYCPE-LVQLLKEAAEE 26 (76)
T ss_dssp CSSCTTHHH-HHHHHHHHHHH
T ss_pred CCCCCCcHH-HHHHHHHHHHh
Confidence 667999993 34444444433
No 240
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=61.63 E-value=13 Score=31.15 Aligned_cols=55 Identities=9% Similarity=-0.053 Sum_probs=31.8
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCc
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 92 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~ 92 (156)
.+++-|..|-...||+|. .....+++++.... .+. .-.| +.....+++++++...
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp-~~v~~~~~~a~~~~--~i~-~~~i---d~~~~~~~~~~~~v~~ 169 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCP-DVVQALNLMAVLNP--NIT-HTMI---DGALFQDEVEARNIMA 169 (517)
T ss_pred CCCeEEEEEEcCCCCCcH-HHHHHHHHHHHhCC--Cce-EEEE---EchhCHhHHHhcCCcc
Confidence 457766666688999999 45666666665432 333 3333 3333445556666543
No 241
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=61.05 E-value=15 Score=28.52 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=18.2
Q ss_pred CCCCCCCcCChhhHHHhHHHHHHcCC
Q psy5399 42 AFTPGCSVTHLPGYLAKEKDLKAKGI 67 (156)
Q Consensus 42 ~~cp~C~~~~l~~l~~~~~~~~~~~~ 67 (156)
.|||.|- . -..+..+.+.+.+.++
T Consensus 2 ~~CpGCg-~-~~i~~~~~~a~~~l~~ 25 (287)
T TIGR02177 2 DWCPGCG-D-FGILSALQRALAELNL 25 (287)
T ss_pred CcCCCCC-C-hHHHHHHHHHHHHhcC
Confidence 5999999 3 4788888888876544
No 242
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=60.94 E-value=11 Score=25.15 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEEE--ecC--CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 59 EKDLKAKGIHEIFCI--AVN--DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 59 ~~~~~~~~~~~v~~i--s~d--~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
.+.+++.|++ .-.+ ..+ +.+.+.+|++..+.+ +.-+....+..++++|..
T Consensus 18 ~~~L~~~gi~-~~~~~y~~~~~s~~eL~~~l~~~g~~--~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 18 LAWLEEHGIE-YTFIDYLKTPPSREELKKILSKLGDG--VEELINTRGTTYRELNLD 71 (117)
T ss_pred HHHHHHcCCC-cEEEEeecCCCCHHHHHHHHHHcCcc--HHHHHHhccchHHHcCCc
Confidence 3445566777 5333 333 679999999999987 776676778889999843
No 243
>PRK05370 argininosuccinate synthase; Validated
Probab=60.15 E-value=8.8 Score=31.71 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=49.0
Q ss_pred ehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-------HHHHHHHHHHcCCCcceEE
Q psy5399 24 QIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-------AFVMEAWCRKNNAEGKIRF 96 (156)
Q Consensus 24 ~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-------~~~~~~~~~~~~~~~~f~~ 96 (156)
.|+++.+|++|+|-+-.|..+.+|.. +| ++.+++ |++++.|- -+..++-+.+.|.. =.+
T Consensus 4 ~~~~l~~~~KVvLAYSGGLDTSv~l~-wL----------~e~~~e-Via~~aDvGQ~~~ed~~~i~~kA~~~GA~--~~~ 69 (447)
T PRK05370 4 ILKHLPVGQRVGIAFSGGLDTSAALL-WM----------RQKGAV-PYAYTANLGQPDEDDYDAIPRRAMEYGAE--NAR 69 (447)
T ss_pred hhhhCCCCCEEEEEecCCchHHHHHH-HH----------HhcCCe-EEEEEEECCCCCccchHHHHHHHHHhCCC--EEE
Confidence 46775588888888766666666652 22 233777 98887652 24667777777775 457
Q ss_pred EecCCchhHHhh
Q psy5399 97 LADPNLEFTKKL 108 (156)
Q Consensus 97 ~~D~~~~~~~~~ 108 (156)
+.|-...|++.|
T Consensus 70 viDlr~eF~e~~ 81 (447)
T PRK05370 70 LIDCRAQLVAEG 81 (447)
T ss_pred EeccHHHHHHHH
Confidence 788888888887
No 244
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=59.79 E-value=28 Score=22.16 Aligned_cols=39 Identities=21% Similarity=0.212 Sum_probs=33.6
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.+.+.+..+++++.|.. ++.+|......++.+.+..++.
T Consensus 26 ~~~~~~~l~~l~~~g~~-i~ivS~~~~~~~~~~~~~~~~~ 64 (139)
T cd01427 26 YPGVKEALKELKEKGIK-LALATNKSRREVLELLEELGLD 64 (139)
T ss_pred CcCHHHHHHHHHHCCCe-EEEEeCchHHHHHHHHHHcCCc
Confidence 47788888888888988 9999998899999999998873
No 245
>PRK04596 minC septum formation inhibitor; Reviewed
Probab=59.07 E-value=53 Score=25.06 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=40.0
Q ss_pred hhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 26 ADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 26 ~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.++|++.|+||.+ ......+. ...|..+.+.+++.|+. +++|...+++. ++.+...+++
T Consensus 45 P~FF~~~PvVlDl--~~l~~~~~---~~dl~~L~~~Lr~~gl~-~vGV~g~~~~~-~~~a~~~gL~ 103 (248)
T PRK04596 45 PKLFGRAAVILDF--GGLSQVPD---LATAKALLDGLRSAGVL-PVALAYGTSEI-DLLSQQLGLP 103 (248)
T ss_pred hHhhCCCcEEEEc--hhhcCccc---cccHHHHHHHHHHCCCE-EEEEeCCCHHH-HHHHHHCCCC
Confidence 4568999999998 33322222 24678888888999999 99999876653 3444444544
No 246
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=58.99 E-value=28 Score=30.35 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=16.8
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTH 51 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~ 51 (156)
-.+||++|..= .+||-||..++
T Consensus 41 ~edkPIflSIG-ys~CHWChVM~ 62 (667)
T COG1331 41 EEDKPILLSIG-YSTCHWCHVMA 62 (667)
T ss_pred HhCCCEEEEec-cccccchHHHh
Confidence 36788888864 88999998643
No 247
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=57.77 E-value=12 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=20.1
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKG 66 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~ 66 (156)
++-.|||.|- . -..+..+.+.+.+.+
T Consensus 6 ~~~~~CpGCg-~-~~i~~~~~~a~~~l~ 31 (280)
T PRK11869 6 YDIAWCPGCG-N-FGIRNALMKALSELN 31 (280)
T ss_pred CCCCCCcCCC-C-HHHHHHHHHHHHHcC
Confidence 5678999999 3 478888888887654
No 248
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=57.67 E-value=19 Score=21.45 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=26.1
Q ss_pred CCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHH
Q psy5399 18 TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA 57 (156)
Q Consensus 18 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~ 57 (156)
.+|+.+.+-+ +++..+.|.+- |+ |-.|... .-.+..
T Consensus 14 ~dGGdv~lv~-v~~~~V~V~l~-Ga-C~gC~~s-~~Tl~~ 49 (68)
T PF01106_consen 14 SDGGDVELVD-VDDGVVYVRLT-GA-CSGCPSS-DMTLKQ 49 (68)
T ss_dssp HTTEEEEEEE-EETTEEEEEEE-SS-CCSSCCH-HHHHHH
T ss_pred hcCCcEEEEE-ecCCEEEEEEE-eC-CCCCCCH-HHHHHH
Confidence 5899999999 67776666664 65 8899853 455644
No 249
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=56.30 E-value=55 Score=21.49 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=31.5
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCC--------HHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVND--------AFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~--------~~~~~~~~~~~~~~ 91 (156)
.|...+..+.+++.|+. ++.+|... .+.++++++.+++.
T Consensus 27 ~~~v~~~l~~L~~~g~~-l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGYK-VVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 47777888888888988 88888776 67788888888887
No 250
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=55.90 E-value=26 Score=24.34 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=34.0
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
..|.++.+++++.|+. ++.+..+..+.+.+++++++.. .++++.+
T Consensus 53 ~sL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~~~---~V~~~~~ 97 (165)
T PF00875_consen 53 ESLADLQESLRKLGIP-LLVLRGDPEEVLPELAKEYGAT---AVYFNEE 97 (165)
T ss_dssp HHHHHHHHHHHHTTS--EEEEESSHHHHHHHHHHHHTES---EEEEE--
T ss_pred HHHHHHHHHHHhcCcc-eEEEecchHHHHHHHHHhcCcC---eeEeccc
Confidence 4567788888999999 9989999889999999999975 3444443
No 251
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=55.48 E-value=11 Score=21.94 Aligned_cols=53 Identities=19% Similarity=0.103 Sum_probs=23.7
Q ss_pred eeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 39 VPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 39 ~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
|...+||.|.. ...+ +...|++ +--+..+.......+.+.+... ..|++-+.+
T Consensus 4 y~~~~~~~~~~--v~~~------l~~~gi~-~~~~~v~~~~~~~~~~~~~p~~-~vP~l~~~~ 56 (73)
T cd03059 4 YSGPDDVYSHR--VRIV------LAEKGVS-VEIIDVDPDNPPEDLAELNPYG-TVPTLVDRD 56 (73)
T ss_pred EECCCChhHHH--HHHH------HHHcCCc-cEEEEcCCCCCCHHHHhhCCCC-CCCEEEECC
Confidence 33556888883 2222 2344665 3333222111112334433332 377776654
No 252
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=55.21 E-value=9.5 Score=29.43 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=40.9
Q ss_pred cCCcceecccCCCceeehhhHhC--CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH--HcCCCEEEEEecCCHHHHHH
Q psy5399 8 TLPDALLHENTPQTKIQIADAIK--GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK--AKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 8 ~~P~f~l~~~~~g~~~~l~~~~~--gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~--~~~~~~v~~is~d~~~~~~~ 83 (156)
.+|-|++. +.+|.++-.+. -. ++.+.++|+ |...+-..+.++...-. ..++. |..++.+...++.+
T Consensus 74 ~VPVF~it-n~~G~p~l~~~-~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~~~~~k-V~pvsL~~vY~l~~ 143 (274)
T PF04278_consen 74 GVPVFTIT-NSQGEPVLVSG-PDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPELASGAK-VVPVSLGKVYQLAQ 143 (274)
T ss_dssp TSEEEEEE--TT--B------TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHHHTT-E-EEEEEHHHHHHHHH
T ss_pred CceEEEEE-CCCCCEEEecc-CCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccccCceE-EEEecHHHHHHHHH
Confidence 58999999 79999988876 33 455666665 33222222223332211 35677 99999987665532
Q ss_pred HH--HHcCCCcceEEEecCCchhHHhh
Q psy5399 84 WC--RKNNAEGKIRFLADPNLEFTKKL 108 (156)
Q Consensus 84 ~~--~~~~~~~~f~~~~D~~~~~~~~~ 108 (156)
-- +..++. |.++.|+. ++..+.
T Consensus 144 ~~~~k~~~~~--F~~vP~~~-qV~~A~ 167 (274)
T PF04278_consen 144 ENKKKPEGLQ--FRFVPDPK-QVEAAL 167 (274)
T ss_dssp HTTT-TT-EE--EEEE--HH-HHHHHH
T ss_pred HhhcCCcCce--EEEcCCHH-HHHHHH
Confidence 11 233344 99999874 343433
No 253
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=54.70 E-value=27 Score=25.09 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.5
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEe
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIA 74 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is 74 (156)
-.||.| ||++. + .+..++++++.+.|+. +++||
T Consensus 83 DRVllf-----s~~~~--~-~e~~~~a~~L~~~gi~-~v~Vs 115 (172)
T PF10740_consen 83 DRVLLF-----SPFST--D-EEAVALAKQLIEQGIP-FVGVS 115 (172)
T ss_dssp -EEEEE-----ES-S-----HHHHHHHHHHHHHT---EEEEE
T ss_pred ceEEEE-----eCCCC--C-HHHHHHHHHHHHCCCC-EEEEE
Confidence 346776 66666 3 6888999999999999 99999
No 254
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=54.09 E-value=38 Score=22.12 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.5
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+++.+..+..+++|+. +++|+.+. .+.+++++.+..
T Consensus 57 ~e~i~~~~~a~~~g~~-iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 57 EETLSAVEQAKERGAK-IVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCc--hHHHHHHHcCCc
Confidence 6777888888888998 99999765 377777777543
No 255
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=53.74 E-value=29 Score=26.18 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=37.3
Q ss_pred CCCCCCCCcCChhh--HHHhHHHHHHcCCCEEEEEecC----CHHHHHHHHHHcCCCcceEEEec
Q psy5399 41 GAFTPGCSVTHLPG--YLAKEKDLKAKGIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 41 ~~~cp~C~~~~l~~--l~~~~~~~~~~~~~~v~~is~d----~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
..|...|....+|. ..++.+.++++|+. ++.||.- .....+..++.++++.-|+++..
T Consensus 103 ~~~~~~~~~~s~p~~~a~elL~~l~~~G~~-i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i~~ 166 (237)
T TIGR01672 103 EKVNNGWDEFSIPKEVARQLIDMHQRRGDA-IFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVIFA 166 (237)
T ss_pred HHHHHhcccCCcchhHHHHHHHHHHHCCCE-EEEEeCCCCCcCHHHHHHHHHHhCCchheeEEEC
Confidence 44444554334555 77888888999998 8878764 33455666777887643565543
No 256
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=53.69 E-value=15 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=18.0
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEE
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIF 71 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~ 71 (156)
|+-|+-||.|..+ +-.+-+++.+++ ++
T Consensus 7 FIAGA~CP~C~~~------Dtl~mW~En~ve-~v 33 (66)
T COG3529 7 FIAGAVCPACQAQ------DTLAMWRENNVE-IV 33 (66)
T ss_pred hhccCCCcccchh------hHHHHHHhcCCc-eE
Confidence 5667889999942 333445677888 54
No 257
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=52.89 E-value=35 Score=25.83 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=36.3
Q ss_pred HhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCc
Q psy5399 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 102 (156)
Q Consensus 57 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~ 102 (156)
..+.++++.|+. |+.+|+-+..++..+.++.+... .|+++....
T Consensus 30 pv~~el~d~G~~-Vi~~SSKT~aE~~~l~~~l~v~~-~p~iaEnG~ 73 (274)
T COG3769 30 PVLLELKDAGVP-VILCSSKTRAEMLYLQKSLGVQG-LPLIAENGA 73 (274)
T ss_pred hHHHHHHHcCCe-EEEeccchHHHHHHHHHhcCCCC-CceeecCCc
Confidence 456677788999 99999999999999999999875 777775443
No 258
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=50.74 E-value=31 Score=24.45 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=44.0
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecC--C------chhHHhhCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP--N------LEFTKKLGV 110 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~--~------~~~~~~~gv 110 (156)
.|...+..+.+++.|+. +..+|.|+.......+++.++.. .-+..+. . ..+.+++++
T Consensus 129 ~~~~~~~l~~L~~~Gi~-~~i~TGD~~~~a~~~~~~lgi~~-~~v~a~~~~kP~~k~~~~~i~~l~~ 193 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIK-VAILTGDNESTASAIAKQLGIFD-SIVFARVIGKPEPKIFLRIIKELQV 193 (215)
T ss_dssp HTTHHHHHHHHHHTTEE-EEEEESSEHHHHHHHHHHTTSCS-EEEEESHETTTHHHHHHHHHHHHTC
T ss_pred hhhhhhhhhhhhccCcc-eeeeecccccccccccccccccc-ccccccccccccchhHHHHHHHHhc
Confidence 47788888999999998 99999999999999999999953 4444443 2 356666665
No 259
>KOG0913|consensus
Probab=50.58 E-value=2.5 Score=31.81 Aligned_cols=39 Identities=23% Similarity=0.429 Sum_probs=25.0
Q ss_pred hHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 27 DAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 27 ~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
+++.|.+.+.++ ++|||.|... .+.+...+.--.+.++.
T Consensus 36 ~~l~gewmi~~~--ap~~psc~~~-~~~~~~~a~~s~dL~v~ 74 (248)
T KOG0913|consen 36 ELLTGEWMIEFG--APWCPSCSDL-IPHLENFATVSLDLGVK 74 (248)
T ss_pred hhhchHHHHHhc--CCCCccccch-HHHHhccCCccCCCcee
Confidence 344566655554 8999999954 57777666544444444
No 260
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=50.02 E-value=14 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=28.6
Q ss_pred cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH
Q psy5399 17 NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63 (156)
Q Consensus 17 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 63 (156)
..++....+++ ..++..++.|+ ..-||+|.. .++.+.+.+....
T Consensus 71 ~~~~~~~~~G~-~~~~v~v~~f~-d~~Cp~C~~-~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGKDVVLGN-PYAPVTVVEFF-DYTCPYCKE-AFPELKKKYIDDG 114 (244)
T ss_pred cCCCCcccccC-CCCCceEEEEe-cCcCccHHH-HHHHHHHHhhhcC
Confidence 35666666776 34454555554 777999974 5788888665554
No 261
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=49.52 E-value=40 Score=25.06 Aligned_cols=40 Identities=8% Similarity=-0.038 Sum_probs=32.9
Q ss_pred ChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 51 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 51 ~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..|.+.++.+++.++|+. ++..|.-+....+++..+.++.
T Consensus 22 ~~~~~~~~i~~~~~~gi~-fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 22 ALLRLNALLEDHRGEDSL-LVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHHhhccCce-EEEEcCCCHHHHHHHHhcCCCC
Confidence 358888888888888887 8888888888888888888776
No 262
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=49.07 E-value=53 Score=21.56 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=39.5
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChh------hHHH-hHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLP------GYLA-KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~------~l~~-~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
++|..+++ -.++..|+-|-. ..- .+.+ +.+.++... +.-.+..++.+.++.+++ .
T Consensus 20 ~~G~~~~v-~~~~~~C~~CGe-~~~~~e~~~~~~~~i~~~~~~~~-------~~~~~~~i~~~r~~~glt---------q 81 (127)
T TIGR03830 20 YKGESITI-GVPGWYCPACGE-ELLDPEESKRNSAALADFYRKVD-------GLLTPPEIRRIRKKLGLS---------Q 81 (127)
T ss_pred EcCEEEEE-eeeeeECCCCCC-EEEcHHHHHHHHHHHHHHHHHcc-------CCcCHHHHHHHHHHcCCC---------H
Confidence 57776666 677888999963 221 1111 222222211 122667888888888887 4
Q ss_pred chhHHhhCCee
Q psy5399 102 LEFTKKLGVEH 112 (156)
Q Consensus 102 ~~~~~~~gv~~ 112 (156)
..+++.+|+..
T Consensus 82 ~~lA~~lg~~~ 92 (127)
T TIGR03830 82 REAAELLGGGV 92 (127)
T ss_pred HHHHHHhCCCH
Confidence 57888888754
No 263
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=48.45 E-value=11 Score=20.99 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=24.5
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCC-EEEEEecCCHHHHHHHHHHcCCCcceEEEecCCch
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIH-EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 103 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~-~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~ 103 (156)
..+||.|.. +..+.+. .++. ++.-++.+..... .+.+..+.. ..|++.+.+..
T Consensus 6 ~~~~~~~~~--~~~~l~~------~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~P~l~~~~~~ 59 (71)
T cd00570 6 FPGSPRSLR--VRLALEE------KGLPYELVPVDLGEGEQE-EFLALNPLG-KVPVLEDGGLV 59 (71)
T ss_pred CCCCccHHH--HHHHHHH------cCCCcEEEEeCCCCCCCH-HHHhcCCCC-CCCEEEECCEE
Confidence 456998883 2222222 2443 1444444322211 334434332 27877776533
No 264
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=47.97 E-value=7.3 Score=27.50 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=21.9
Q ss_pred EEeeCCCCCCCCcCChhhHHHhHHHHHHcCCC
Q psy5399 37 FGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIH 68 (156)
Q Consensus 37 ~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~ 68 (156)
.||...-||+|-.. .+.+.++.+++. +++
T Consensus 3 ~~~~D~~Cp~cy~~-~~~l~~l~~~~~--~~~ 31 (193)
T PF01323_consen 3 EFFFDFICPWCYLA-SPRLRKLRAEYP--DVE 31 (193)
T ss_dssp EEEEBTTBHHHHHH-HHHHHHHHHHHT--TCE
T ss_pred EEEEeCCCHHHHHH-HHHHHHHHHHhc--CCc
Confidence 34447789999965 699999999984 355
No 265
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=47.72 E-value=19 Score=30.11 Aligned_cols=55 Identities=7% Similarity=-0.057 Sum_probs=30.3
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCc
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 92 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~ 92 (156)
.+++-|-.|-...||+|+ .....++++..+.+ ++. .-. -+.....+++++++...
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp-~~v~~~~~~a~~~p--~i~-~~~---id~~~~~~~~~~~~v~~ 170 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCP-DVVQALNQMALLNP--NIS-HTM---IDGALFQDEVEALGIQG 170 (515)
T ss_pred CCCeEEEEEEeCCCCCCH-HHHHHHHHHHHhCC--Cce-EEE---EEchhCHHHHHhcCCcc
Confidence 456655555588899999 44555555554433 333 222 23333445556666543
No 266
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=47.39 E-value=36 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=32.9
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|.+.++.+++++.|+. ++.+|..+...++...+.+++.
T Consensus 79 ~~~~~~~L~~l~~~~~~-~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 79 YPGVRELLERLKAKGIP-LVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp STTHHHHHHHHHHTTSE-EEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhhhcccccce-eEEeecCCcccccccccccccc
Confidence 46777888888888999 9999999888888888888865
No 267
>PRK08244 hypothetical protein; Provisional
Probab=46.74 E-value=28 Score=28.83 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.5
Q ss_pred cCCCcCCcceecccCCCceeehhhHhCC-CeEEEEE
Q psy5399 4 QVGDTLPDALLHENTPQTKIQIADAIKG-KKVIIFG 38 (156)
Q Consensus 4 ~~G~~~P~f~l~~~~~g~~~~l~~~~~g-k~vvl~f 38 (156)
.+|..+|+..+. ..+|...+|.+++.+ ++++|.|
T Consensus 392 ~~G~r~p~~~~~-~~~~~~~~l~~~~~~~~~~ll~~ 426 (493)
T PRK08244 392 LNGKRLPDLELT-LSDGESERLYSLLHKGTFLLLSF 426 (493)
T ss_pred CCCCCCCCccee-cCCCCceeHHHhhcCCeEEEEEe
Confidence 579999999987 567777899997754 5677765
No 268
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=46.53 E-value=40 Score=26.13 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=16.9
Q ss_pred eCCCCCCCCcCChhhHHHhHHHHHHc
Q psy5399 40 PGAFTPGCSVTHLPGYLAKEKDLKAK 65 (156)
Q Consensus 40 ~~~~cp~C~~~~l~~l~~~~~~~~~~ 65 (156)
+-.|||.|- . -..+..+.+.+.+.
T Consensus 6 ~~~~CpGCg-~-~~il~al~~al~~l 29 (279)
T PRK11866 6 PPIWCPGCG-N-YGILEALRKALAEL 29 (279)
T ss_pred CCCCCCCCC-C-hHHHHHHHHHHHHh
Confidence 457999999 3 46677777766554
No 269
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=45.84 E-value=70 Score=25.16 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=37.5
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchh
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 104 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~ 104 (156)
|...+..++++++|+. +..+|..+.+.....++..++...|.++.-.+...
T Consensus 151 p~V~EtL~eLkekGik-LaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKERGCV-LVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHcCCCccccEEEECCCcc
Confidence 7788899999999987 66666677777888999999875465444444333
No 270
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=45.50 E-value=29 Score=22.71 Aligned_cols=60 Identities=17% Similarity=0.043 Sum_probs=37.4
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--C--CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--N--DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
.+.|.-|+ .+ .+.+++.++. +..+.. + +.++++.|++..+.+ +.-+....+..++..+..
T Consensus 6 ~~~C~t~r-kA-------~~~L~~~~i~-~~~~di~~~~~t~~el~~~l~~~~~~--~~~lin~~~~~y~~l~~~ 69 (112)
T cd03034 6 NPRCSKSR-NA-------LALLEEAGIE-PEIVEYLKTPPTAAELRELLAKLGIS--PRDLLRTKEAPYKELGLA 69 (112)
T ss_pred CCCCHHHH-HH-------HHHHHHCCCC-eEEEecccCCcCHHHHHHHHHHcCCC--HHHHHhcCCchHHHcCCC
Confidence 44466666 22 3344556777 655543 2 678999999999976 444444556666766654
No 271
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=44.47 E-value=94 Score=22.27 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.6
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
.|.+.++.+.+++.|+. +..+|......++.+++.+++...|..+
T Consensus 95 ~~g~~~~l~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~~~f~~~ 139 (226)
T PRK13222 95 YPGVKETLAALKAAGYP-LAVVTNKPTPFVAPLLEALGIADYFSVV 139 (226)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCCccCccEE
Confidence 57888888888888888 8888877777788888888875435543
No 272
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=43.73 E-value=48 Score=23.06 Aligned_cols=35 Identities=14% Similarity=0.305 Sum_probs=28.8
Q ss_pred HHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 56 LAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 56 ~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.++.+.+++.|+. ++.||.+...-.+.+++..+++
T Consensus 95 ~e~i~~~~~~~~~-v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 95 MELIRELKDNGIK-VVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHHTTSE-EEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCC
Confidence 3666777788888 9999998888888888888877
No 273
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=43.65 E-value=76 Score=21.92 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=26.7
Q ss_pred eehhhHhCCCeEEEEEeeCC-CCCCCCcCChh--------h---HHHhHHHHHHcC-CCEEEEEecCC
Q psy5399 23 IQIADAIKGKKVIIFGVPGA-FTPGCSVTHLP--------G---YLAKEKDLKAKG-IHEIFCIAVND 77 (156)
Q Consensus 23 ~~l~~~~~gk~vvl~f~~~~-~cp~C~~~~l~--------~---l~~~~~~~~~~~-~~~v~~is~d~ 77 (156)
.++.+ -.|-.++|++-.++ -|++|...+.. . +.++.+++.+.+ +. -+.+|...
T Consensus 8 ~s~~d-G~G~r~~if~~gCnl~C~~C~n~~~~~~~~g~~~~~~~~~~i~~~l~~~~~~~-gVt~sGGE 73 (154)
T TIGR02491 8 DDIVN-GEGIRVSLFVAGCKHHCEGCFNKETWNFNGGKEFTEALEKEIIRDLNDNPLID-GLTLSGGD 73 (154)
T ss_pred Cceec-CCCcEEEEEECCCCCCCcCCCcccccCCCCCCcCCHHHHHHHHHHHHhcCCcC-eEEEeChh
Confidence 34444 34544555543332 28999643221 1 455556665544 44 56777653
No 274
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.80 E-value=81 Score=19.53 Aligned_cols=40 Identities=8% Similarity=0.210 Sum_probs=20.7
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCC-EEEEEecCCHHHHHHHHHHcC
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIH-EIFCIAVNDAFVMEAWCRKNN 89 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~-~v~~is~d~~~~~~~~~~~~~ 89 (156)
+..||-|. ..+..|.++ +++ +.+-|. .+-..+++|..-..
T Consensus 9 sn~Cpdca-~a~eyl~rl-------~v~yd~VeIt-~Sm~NlKrFl~lRD 49 (85)
T COG4545 9 SNLCPDCA-PAVEYLERL-------NVDYDFVEIT-ESMANLKRFLHLRD 49 (85)
T ss_pred cccCcchH-HHHHHHHHc-------CCCceeeehh-hhhhhHHHHHhhhc
Confidence 78899998 344333333 343 123222 24455666665544
No 275
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=42.53 E-value=1.2e+02 Score=24.92 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=51.2
Q ss_pred EEEEeeCCCCCCCCcCChhhHHHhHHHHH--HcCCCEEEEEecCC-----HHHHHHHHHHcCCCcceEEEecCCchhHHh
Q psy5399 35 IIFGVPGAFTPGCSVTHLPGYLAKEKDLK--AKGIHEIFCIAVND-----AFVMEAWCRKNNAEGKIRFLADPNLEFTKK 107 (156)
Q Consensus 35 vl~f~~~~~cp~C~~~~l~~l~~~~~~~~--~~~~~~v~~is~d~-----~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~ 107 (156)
++.+. |+ +..-.. -.|.|++..|. ...-. |-.|+.|+ .+.++.|++..+.+ +.++.++. .+..+
T Consensus 205 vi~LV-GP-TGVGKT---TTlAKLAar~~~~~~~~k-VaiITtDtYRIGA~EQLk~Ya~im~vp--~~vv~~~~-el~~a 275 (407)
T COG1419 205 VIALV-GP-TGVGKT---TTLAKLAARYVMLKKKKK-VAIITTDTYRIGAVEQLKTYADIMGVP--LEVVYSPK-ELAEA 275 (407)
T ss_pred EEEEE-CC-CCCcHH---HHHHHHHHHHHhhccCcc-eEEEEeccchhhHHHHHHHHHHHhCCc--eEEecCHH-HHHHH
Confidence 33333 54 455552 46777777775 33333 77778875 68889999999999 99988864 56555
Q ss_pred hCCeeeccCCCcceeeeEEEEEe-CCc
Q psy5399 108 LGVEHEIPVLGGWRSKRYSMVVD-DGK 133 (156)
Q Consensus 108 ~gv~~~~~~~~~~~~~~~~~iid-~G~ 133 (156)
.....+ .- .+++| -|+
T Consensus 276 i~~l~~-------~d---~ILVDTaGr 292 (407)
T COG1419 276 IEALRD-------CD---VILVDTAGR 292 (407)
T ss_pred HHHhhc-------CC---EEEEeCCCC
Confidence 544321 11 57777 775
No 276
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=42.17 E-value=23 Score=20.35 Aligned_cols=11 Identities=9% Similarity=0.002 Sum_probs=7.7
Q ss_pred eeCCCCCCCCc
Q psy5399 39 VPGAFTPGCSV 49 (156)
Q Consensus 39 ~~~~~cp~C~~ 49 (156)
|...+||+|..
T Consensus 4 y~~~~s~~~~~ 14 (74)
T cd03051 4 YDSPTAPNPRR 14 (74)
T ss_pred EeCCCCcchHH
Confidence 44667998883
No 277
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.39 E-value=1e+02 Score=20.34 Aligned_cols=62 Identities=11% Similarity=0.005 Sum_probs=42.3
Q ss_pred hhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-----CHHHHHHHHHHcCCCc
Q psy5399 25 IADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-----DAFVMEAWCRKNNAEG 92 (156)
Q Consensus 25 l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-----~~~~~~~~~~~~~~~~ 92 (156)
..++++|+-++|.. +..++... -..+.++.+++.+.|+. =++|... =|+.+.+.+.+++++.
T Consensus 36 ~~~~l~~gElvltt--g~~~~~~~---~~~~~~~i~~L~~~~~a-gL~i~~~~~~~~iP~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 36 PSDWLRGGELVLTT--GYALRDDD---EEELREFIRELAEKGAA-GLGIKTGRYLDEIPEEIIELADELGLPL 102 (123)
T ss_pred HHHhCCCCeEEEEC--CcccCCCC---HHHHHHHHHHHHHCCCe-EEEEeccCccccCCHHHHHHHHHcCCCE
Confidence 45656777666664 22233222 13578888888888888 7777654 4788899999999773
No 278
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=41.35 E-value=72 Score=21.89 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=24.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|.+.++.+.+++.|.. ++.+|.......+.+++.+++.
T Consensus 76 ~g~~~~l~~l~~~g~~-~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 76 PGARELISWLKERGID-TVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCc
Confidence 4556666666666766 6666666666666666666654
No 279
>PRK10026 arsenate reductase; Provisional
Probab=41.08 E-value=42 Score=23.21 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=35.8
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEe--cC--CHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIA--VN--DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is--~d--~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
-+-|.-|+. + .+.+.+.|+. +-.+. .+ +.++++.|++..+.+ ..-+....+..++.++...
T Consensus 9 ~p~Cst~RK-A-------~~wL~~~gi~-~~~~d~~~~ppt~~eL~~~l~~~g~~--~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 9 NPACGTSRN-T-------LEMIRNSGTE-PTIIHYLETPPTRDELVKLIADMGIS--VRALLRKNVEPYEELGLAE 73 (141)
T ss_pred CCCCHHHHH-H-------HHHHHHCCCC-cEEEeeeCCCcCHHHHHHHHHhCCCC--HHHHHHcCCchHHHcCCCc
Confidence 344666662 2 2334455777 55554 23 679999999999875 3323334556666666543
No 280
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.97 E-value=1e+02 Score=20.18 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=38.5
Q ss_pred HhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcC-CCEEEEEecCCHHHHHHHHHHc-CCCcceEE
Q psy5399 28 AIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKG-IHEIFCIAVNDAFVMEAWCRKN-NAEGKIRF 96 (156)
Q Consensus 28 ~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~-~~~v~~is~d~~~~~~~~~~~~-~~~~~f~~ 96 (156)
..+.++|+|+.=...--|-|-.. .. ..+-+...| ++ +..++.=..+++|+=.+++ +|+- ||-
T Consensus 11 ~i~~n~VvLFMKGtp~~P~CGFS--~~---~vqiL~~~g~v~-~~~vnVL~d~eiR~~lk~~s~WPT-~PQ 74 (105)
T COG0278 11 QIKENPVVLFMKGTPEFPQCGFS--AQ---AVQILSACGVVD-FAYVDVLQDPEIRQGLKEYSNWPT-FPQ 74 (105)
T ss_pred HhhcCceEEEecCCCCCCCCCcc--HH---HHHHHHHcCCcc-eeEEeeccCHHHHhccHhhcCCCC-Cce
Confidence 35678888887766678888853 33 344445667 56 8888764445566544444 4543 773
No 281
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=40.94 E-value=96 Score=19.85 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=32.1
Q ss_pred HHHHHcCCCEEEEEecCCH----HHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 60 KDLKAKGIHEIFCIAVNDA----FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 60 ~~~~~~~~~~v~~is~d~~----~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
+..+...+. ++.|+.|.+ +....++++++.+ +-.+.....++++..|..
T Consensus 26 kai~~gkak-lViiA~D~~~~~~~~i~~~c~~~~Ip--~~~~~~tk~eLG~a~Gk~ 78 (99)
T PRK01018 26 KAIKLGKAK-LVIVASNCPKDIKEDIEYYAKLSGIP--VYEYEGSSVELGTLCGKP 78 (99)
T ss_pred HHHHcCCce-EEEEeCCCCHHHHHHHHHHHHHcCCC--EEEECCCHHHHHHHhCCC
Confidence 444545566 888887743 4556677888777 655544567888888863
No 282
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=40.05 E-value=44 Score=21.93 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=36.8
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec--C--CHHHHHHHHHHcCCCcce-EEEecCCchhHHhhCCe
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV--N--DAFVMEAWCRKNNAEGKI-RFLADPNLEFTKKLGVE 111 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~--d--~~~~~~~~~~~~~~~~~f-~~~~D~~~~~~~~~gv~ 111 (156)
+|....|.-|+. + .+.+++.|+. +..+.. + +.++++.|++..+.+ . .=+....+..++.++..
T Consensus 3 iy~~~~C~t~rk-A-------~~~L~~~~i~-~~~~di~~~p~t~~el~~~l~~~g~~--~~~~lin~~~~~~~~l~~~ 70 (114)
T TIGR00014 3 IYHNPRCSKSRN-T-------LALLEDKGIE-PEVVKYLKNPPTKSELEAIFAKLGLT--VAREMIRTKEALYKELGLS 70 (114)
T ss_pred EEECCCCHHHHH-H-------HHHHHHCCCC-eEEEeccCCCcCHHHHHHHHHHcCCc--hHHHHHhcCCcHHHHcCCC
Confidence 343445777762 2 2333455777 665553 2 678999999998764 2 11334456666666654
No 283
>PHA03075 glutaredoxin-like protein; Provisional
Probab=39.78 E-value=12 Score=25.13 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=20.9
Q ss_pred CeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 32 KKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 32 k~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
|.++|.| ..+.|+.|... -..+.++.++|. ++.|+.
T Consensus 2 K~tLILf-GKP~C~vCe~~-s~~l~~ledeY~------ilrVNI 37 (123)
T PHA03075 2 KKTLILF-GKPLCSVCESI-SEALKELEDEYD------ILRVNI 37 (123)
T ss_pred CceEEEe-CCcccHHHHHH-HHHHHHhhcccc------EEEEEe
Confidence 3455554 47789999853 345545555553 555554
No 284
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.71 E-value=70 Score=23.19 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=30.3
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCC-----HHHHHHHHHHcCCCcceEEEe
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVND-----AFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~-----~~~~~~~~~~~~~~~~f~~~~ 98 (156)
-.+.|++..+..++-. |..||.|+ .+.++.|++..+.+ |-...
T Consensus 16 Tt~aKLAa~~~~~~~~-v~lis~D~~R~ga~eQL~~~a~~l~vp--~~~~~ 63 (196)
T PF00448_consen 16 TTIAKLAARLKLKGKK-VALISADTYRIGAVEQLKTYAEILGVP--FYVAR 63 (196)
T ss_dssp HHHHHHHHHHHHTT---EEEEEESTSSTHHHHHHHHHHHHHTEE--EEESS
T ss_pred hHHHHHHHHHhhcccc-ceeecCCCCCccHHHHHHHHHHHhccc--cchhh
Confidence 5677888888777777 88888885 47778888888866 44443
No 285
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=39.21 E-value=53 Score=25.37 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=17.8
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHc
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAK 65 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~ 65 (156)
..|-.|||.|.. . -..+.+.+.+.+.
T Consensus 13 ~~~~~~CpGCg~-~-i~~~~v~~al~e~ 38 (277)
T PRK09628 13 KMPTLWCWGCGD-G-VILKSIIRAIDKL 38 (277)
T ss_pred CCCCCcCCCCCC-c-hHHHHHHHHHHHh
Confidence 457789999983 2 4566666777654
No 286
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=39.12 E-value=47 Score=20.44 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=8.2
Q ss_pred EEEEEeeCCCCCCCC
Q psy5399 34 VIIFGVPGAFTPGCS 48 (156)
Q Consensus 34 vvl~f~~~~~cp~C~ 48 (156)
+.|+. ...||+|.
T Consensus 19 ~~Ly~--~~~sp~~~ 31 (89)
T cd03055 19 IRLYS--MRFCPYAQ 31 (89)
T ss_pred EEEEe--CCCCchHH
Confidence 44444 44599998
No 287
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.10 E-value=26 Score=31.61 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=25.3
Q ss_pred eEEEecCCchhHHhhCCeeec---------cCCCcceeeeEEEEEe-CCcEEEE
Q psy5399 94 IRFLADPNLEFTKKLGVEHEI---------PVLGGWRSKRYSMVVD-DGKITQL 137 (156)
Q Consensus 94 f~~~~D~~~~~~~~~gv~~~~---------~~~~~~~~~~~~~iid-~G~I~~~ 137 (156)
.|++.|+. +-..||..... ...|-.+..|..-++| +|+|..-
T Consensus 252 IpIiaD~~--VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~ 303 (877)
T COG0525 252 IPIIADEY--VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEE 303 (877)
T ss_pred eeeecCcc--cCCcCCCceEEecCCCCchhhhhhhcCCCCceEEECCCCeeccC
Confidence 89999975 33445443222 1223345566677888 9999843
No 288
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=39.05 E-value=89 Score=22.06 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=33.6
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|...++.+.++++|+. +..+|..+...++..++..++...|.
T Consensus 94 ~~~~~~~L~~L~~~g~~-~~i~Sn~~~~~~~~~l~~~gl~~~fd 136 (198)
T TIGR01428 94 HPDVPAGLRALKERGYR-LAILSNGSPAMLKSLVKHAGLDDPFD 136 (198)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHCCChhhhh
Confidence 47777888888888988 88888888888888888888743244
No 289
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=38.77 E-value=38 Score=26.55 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEe-CCcEEEEEEccCCCceeecchhh
Q psy5399 126 SMVVD-DGKITQLNIEPDGTGLTCSLVDE 153 (156)
Q Consensus 126 ~~iid-~G~I~~~~~~~~~~~~~~~~~~~ 153 (156)
+|++| +|+++|....+..+++..+-.+.
T Consensus 107 vf~vd~~G~~vy~~~~d~~t~~~~~~~~~ 135 (295)
T COG3322 107 VFVVDPSGKLVYSKLVDQETATELPLPES 135 (295)
T ss_pred EEEECCCCCEEEEeeeccccccccCCcHH
Confidence 78888 99999998877776666653333
No 290
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=38.48 E-value=35 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=16.9
Q ss_pred CCCCCCCcCChhhHHHhHHHHHHcC
Q psy5399 42 AFTPGCSVTHLPGYLAKEKDLKAKG 66 (156)
Q Consensus 42 ~~cp~C~~~~l~~l~~~~~~~~~~~ 66 (156)
.|||.|-. -..+..+.+.+.+.+
T Consensus 18 ~~CpGCg~--~~il~~l~~al~~l~ 40 (286)
T PRK11867 18 RWCPGCGD--GSILAALQRALAELG 40 (286)
T ss_pred CcCCCCCC--HHHHHHHHHHHHHhC
Confidence 49999993 467888888886543
No 291
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=38.44 E-value=1.6e+02 Score=21.77 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=33.3
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCH--HHHHHHHHHcCCCc-ceEEEecCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDA--FVMEAWCRKNNAEG-KIRFLADPN 101 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~--~~~~~~~~~~~~~~-~f~~~~D~~ 101 (156)
.|...++.+++++.|.. +..+|..+. ....+..++.++.. .|..+.-.+
T Consensus 26 ~pga~e~L~~L~~~G~~-~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKP-VYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG 77 (242)
T ss_pred CccHHHHHHHHHHCCCE-EEEEeCCCCChHHHHHHHHHCCCCccccceEEccH
Confidence 58888899999988988 777765433 33336778888764 355544433
No 292
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.42 E-value=75 Score=23.36 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=31.1
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...++.+.+++.|.. ++.||.....-.+..++..++.
T Consensus 79 ~~ga~elv~~lk~~G~~-v~iiSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 79 TPGAEELVAALKAAGAK-VVIISGGFTFLVEPIAERLGID 117 (212)
T ss_pred CccHHHHHHHHHHCCCE-EEEEcCChHHHHHHHHHHhCCc
Confidence 46777788888888888 8888888777778888888876
No 293
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=38.29 E-value=77 Score=22.41 Aligned_cols=43 Identities=12% Similarity=0.078 Sum_probs=29.7
Q ss_pred HHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 56 LAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 56 ~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+++.+.|++.|.. |+.+|..+.+.+.++.+...-. ..++..+.
T Consensus 2 ~~~~~~y~~~gy~-v~~~S~~~~~g~~~l~~~l~~k--~~vl~G~S 44 (161)
T PF03193_consen 2 EELLEQYEKLGYP-VFFISAKTGEGIEELKELLKGK--TSVLLGQS 44 (161)
T ss_dssp HHHHHHHHHTTSE-EEE-BTTTTTTHHHHHHHHTTS--EEEEECST
T ss_pred HHHHHHHHHcCCc-EEEEeCCCCcCHHHHHHHhcCC--EEEEECCC
Confidence 3567778888999 9999987666666655555545 66666664
No 294
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=38.28 E-value=1.1e+02 Score=21.76 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=33.0
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|...++.+.+++.|+. +..+|..+...++.+.+..++..-|.
T Consensus 87 ~~g~~~~L~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~~~f~ 129 (213)
T TIGR01449 87 FPGVEATLGALRAKGLR-LGLVTNKPTPLARPLLELLGLAKYFS 129 (213)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCcHhhCc
Confidence 46777777888888888 88788888888888889888753244
No 295
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=38.14 E-value=36 Score=20.94 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=20.0
Q ss_pred EEEEEeCCcEEEEEEccCCCceeecc
Q psy5399 125 YSMVVDDGKITQLNIEPDGTGLTCSL 150 (156)
Q Consensus 125 ~~~iid~G~I~~~~~~~~~~~~~~~~ 150 (156)
..||+|.|..+|++++...+......
T Consensus 27 d~fild~~~~iyvW~G~~as~~ek~~ 52 (90)
T smart00262 27 DCYILDTGSEIYVWVGKKSSQDEKKK 52 (90)
T ss_pred CEEEEECCCEEEEEECCCCCHHHHHH
Confidence 38999988899999998776544333
No 296
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=38.00 E-value=1e+02 Score=21.77 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=27.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+...+..+.+++.|.. ++.+|.....-++.+++..++.
T Consensus 90 ~~~~~~l~~l~~~g~~-v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 90 PEARDLIRWHKAEGHT-IVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHcCCc
Confidence 4555666666777877 7777777767777788777765
No 297
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=37.57 E-value=83 Score=22.59 Aligned_cols=39 Identities=23% Similarity=0.128 Sum_probs=31.3
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...++.+.+++.|.. +..+|.+.....+.+++..++.
T Consensus 87 ~~g~~~~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 87 TEGAEELVKTLKEKGYK-VAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCCHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHcCCC
Confidence 46777778888888888 8888888888888888888875
No 298
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=37.06 E-value=77 Score=24.17 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=36.6
Q ss_pred hhHHHhHHHHHHcCCCEEEEEec-------CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAV-------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
..|+++.+..++.+++++.++.. |..+-+.+..++.|++ +.+++..+......+|+.
T Consensus 42 ~~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~--i~iIsgeeEa~l~~~gv~ 105 (285)
T PF02541_consen 42 DALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGID--IEIISGEEEARLSFLGVL 105 (285)
T ss_dssp HHHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS---EEEE-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCc--eEEecHHHHHHHHHHHHH
Confidence 34444444555667777878854 3456677888889999 999998875444445554
No 299
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=36.62 E-value=97 Score=21.51 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=27.2
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChh----hHHHhHHHHHHcCCCEEEEEecC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLP----GYLAKEKDLKAKGIHEIFCIAVN 76 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~----~l~~~~~~~~~~~~~~v~~is~d 76 (156)
|||+ +++ +|+ +.|....... .|++...++++.|+.-|+.|+.|
T Consensus 48 fKGR-v~l--~P~--~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D 94 (142)
T PF10673_consen 48 FKGR-VLL--FPA--FTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSD 94 (142)
T ss_pred cCce-EEe--cCC--eeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 6787 222 233 4455433222 46777788888899878888888
No 300
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=36.38 E-value=33 Score=20.25 Aligned_cols=16 Identities=19% Similarity=0.655 Sum_probs=13.1
Q ss_pred EEEEe-CCcEEEEEEcc
Q psy5399 126 SMVVD-DGKITQLNIEP 141 (156)
Q Consensus 126 ~~iid-~G~I~~~~~~~ 141 (156)
.|.|| +|+|..+.+..
T Consensus 21 ~~~I~~~G~v~~~~v~~ 37 (79)
T PF03544_consen 21 EFTIDPDGRVSDVRVIQ 37 (79)
T ss_dssp EEEEETTTEEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEEE
Confidence 78888 99999987643
No 301
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=36.36 E-value=61 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=16.7
Q ss_pred CCcceeeeEEEEEe-CCcEEEEEEccCCCc
Q psy5399 117 LGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145 (156)
Q Consensus 117 ~~~~~~~~~~~iid-~G~I~~~~~~~~~~~ 145 (156)
+|.|-+--.++++| .|+|.....+|+.+-
T Consensus 102 LGvPGSGSmlvimD~kGRiLtaslSPs~~i 131 (154)
T PF11576_consen 102 LGVPGSGSMLVIMDSKGRILTASLSPSHVI 131 (154)
T ss_dssp -SSTTS-EEEEEEETTS-EEEEEEE--TTT
T ss_pred ccCCCCccEEEEEcCCCcEEeeccCchhhh
Confidence 34443433466669 999999999887653
No 302
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=36.21 E-value=1e+02 Score=18.83 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHcCCCc-ceEEEecCCchhHHhhCCe
Q psy5399 77 DAFVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~f~~~~D~~~~~~~~~gv~ 111 (156)
+.++.+++++++++.. ++|-+...| -+++.||+.
T Consensus 16 s~eE~~~lL~~y~i~~~qLP~I~~~D-Pv~r~~g~k 50 (74)
T PF01191_consen 16 SEEEKKELLKKYNIKPEQLPKILSSD-PVARYLGAK 50 (74)
T ss_dssp -HHHHHHHHHHTT--TTCSSEEETTS-HHHHHTT--
T ss_pred CHHHHHHHHHHhCCChhhCCcccccC-hhhhhcCCC
Confidence 5677888888888754 488776655 577888874
No 303
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=35.85 E-value=1.6e+02 Score=21.00 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=34.9
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
.|...++.+.++++|+. +..+|......+....+..++..-|..+
T Consensus 84 ~~g~~~~l~~L~~~g~~-~~i~S~~~~~~~~~~l~~~gl~~~f~~i 128 (214)
T PRK13288 84 YETVYETLKTLKKQGYK-LGIVTTKMRDTVEMGLKLTGLDEFFDVV 128 (214)
T ss_pred CcCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCChhceeEE
Confidence 57888888888888988 7778888888888888888876434433
No 304
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=35.52 E-value=1.3e+02 Score=21.90 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=37.5
Q ss_pred ChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 51 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 51 ~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
..|...+...+++++|+. +..+|..+...++..++.+++..-|..+
T Consensus 90 ~~~gv~e~L~~L~~~g~~-l~i~T~k~~~~~~~~l~~~gl~~~F~~i 135 (220)
T COG0546 90 LFPGVKELLAALKSAGYK-LGIVTNKPERELDILLKALGLADYFDVI 135 (220)
T ss_pred cCCCHHHHHHHHHhCCCe-EEEEeCCcHHHHHHHHHHhCCccccceE
Confidence 368888889999999998 8888888888899999999887545533
No 305
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=34.71 E-value=83 Score=24.74 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=34.8
Q ss_pred CCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC------HHHHHHHHHH----cCCCc-ceEEEecCC
Q psy5399 42 AFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND------AFVMEAWCRK----NNAEG-KIRFLADPN 101 (156)
Q Consensus 42 ~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~------~~~~~~~~~~----~~~~~-~f~~~~D~~ 101 (156)
.|--.-..+++..|+++.+.-++.++..+++||+.. .+..+...++ +.+.. .|.++.|.-
T Consensus 45 ~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lGvr~FailfDDi 115 (306)
T PF07555_consen 45 KWREPYPEEELAELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLGVRSFAILFDDI 115 (306)
T ss_dssp TTTS---HHHHHHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT--EEEEE-TS-
T ss_pred hhcccCCHHHHHHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Confidence 343333445688999999999999999778999841 2333333333 23322 399998863
No 306
>PLN02954 phosphoserine phosphatase
Probab=34.66 E-value=98 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=32.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|.+.++.+.+++.|+. +..+|......++..++.+++.
T Consensus 86 ~pg~~e~l~~l~~~g~~-~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGTD-VYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCCE-EEEECCCcHHHHHHHHHHhCCC
Confidence 47777888888888988 8888888888888888888875
No 307
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=34.65 E-value=55 Score=21.32 Aligned_cols=29 Identities=7% Similarity=0.030 Sum_probs=23.0
Q ss_pred EEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 71 FCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 71 ~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+.+..++.++.-+||+++|+. |.+.....
T Consensus 51 v~l~F~skE~Ai~yaer~G~~--Y~V~~p~~ 79 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWD--YEVEEPKK 79 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-E--EEEE-STT
T ss_pred eEeeeCCHHHHHHHHHHcCCe--EEEeCCCC
Confidence 457789999999999999999 98886554
No 308
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=34.60 E-value=1.6e+02 Score=23.23 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=35.6
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEec
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
|...+..++++++|+. +..+|....+...+..++.|+..-|..+..
T Consensus 149 PgV~EaL~~LkekGik-LaIaTS~~Re~v~~~L~~lGLd~YFdvIIs 194 (301)
T TIGR01684 149 PRIYDSLTELKKRGCI-LVLWSYGDRDHVVESMRKVKLDRYFDIIIS 194 (301)
T ss_pred HHHHHHHHHHHHCCCE-EEEEECCCHHHHHHHHHHcCCCcccCEEEE
Confidence 7888999999999987 666677777777888999998754544443
No 309
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=34.36 E-value=2e+02 Score=23.45 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..|.++.+++++.|+. ++....+..+.+.+++++++..
T Consensus 61 esL~~L~~~L~~~g~~-L~v~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSD-LLVRSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHHHHHcCCC-eEEEeCCHHHHHHHHHHHhCCC
Confidence 5677888889999999 8888888888899999999875
No 310
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=34.24 E-value=43 Score=21.24 Aligned_cols=38 Identities=13% Similarity=0.045 Sum_probs=19.5
Q ss_pred HcCCC-EEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchh
Q psy5399 64 AKGIH-EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 104 (156)
Q Consensus 64 ~~~~~-~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~ 104 (156)
++|+. +++-|...... ..|.+.+-.. .+|++.|.+..+
T Consensus 34 eKgi~ye~~~vd~~~~p--~~~~~~nP~g-~vPvL~~~~~~i 72 (91)
T cd03061 34 LKGVVFNVTTVDMKRKP--EDLKDLAPGT-QPPFLLYNGEVK 72 (91)
T ss_pred HCCCceEEEEeCCCCCC--HHHHHhCCCC-CCCEEEECCEEe
Confidence 34666 24445443321 2345445443 389998866433
No 311
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=33.88 E-value=1.1e+02 Score=20.07 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=26.7
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEe--cC--CHHHHHHHHHHcCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIA--VN--DAFVMEAWCRKNNA 90 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is--~d--~~~~~~~~~~~~~~ 90 (156)
+|.-+.|..|+. ++ +.+.+.|+. +-.+. .+ +.+++++|+++.++
T Consensus 4 iy~~p~C~~crk-A~-------~~L~~~gi~-~~~~d~~~~p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 4 FYEKPGCANNAR-QK-------ALLEAAGHE-VEVRDLLTEPWTAETLRPFFGDLPV 51 (113)
T ss_pred EEECCCCHHHHH-HH-------HHHHHcCCC-cEEeehhcCCCCHHHHHHHHHHcCH
Confidence 343556888873 32 333455666 54443 23 67889999997764
No 312
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=33.66 E-value=1.2e+02 Score=21.25 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=28.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|...++.+.+++.|+. ++.+|.......+.+++.+++.
T Consensus 83 ~g~~e~l~~l~~~g~~-~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 83 DYAEELVRWLKEKGLK-TAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred ccHHHHHHHHHHCCCE-EEEEeCCcHHHHHHHHHHhCCC
Confidence 5666777777888888 8888877777777777777764
No 313
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=33.56 E-value=1.7e+02 Score=22.30 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=35.9
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
.|...++.+.+++.|+. +..+|......+....+..++..-|..+
T Consensus 144 ~pg~~e~L~~L~~~gi~-laIvSn~~~~~~~~~L~~~gl~~~F~~v 188 (273)
T PRK13225 144 FPGVADLLAQLRSRSLC-LGILSSNSRQNIEAFLQRQGLRSLFSVV 188 (273)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCChhheEEE
Confidence 58888888999988988 7778888888888888888875435544
No 314
>KOG3277|consensus
Probab=33.49 E-value=41 Score=23.73 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=6.9
Q ss_pred CCCCCcCChhhHHH
Q psy5399 44 TPGCSVTHLPGYLA 57 (156)
Q Consensus 44 cp~C~~~~l~~l~~ 57 (156)
|..|...+...+.+
T Consensus 82 CkvCntRs~ktisk 95 (165)
T KOG3277|consen 82 CKVCNTRSTKTISK 95 (165)
T ss_pred eeccCCccccccCh
Confidence 55555444444443
No 315
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=33.08 E-value=1.3e+02 Score=19.09 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=28.2
Q ss_pred ChhhHHHhHHHHHHcCCCEEEEEecC---CHHHHHHHHHHcCCC
Q psy5399 51 HLPGYLAKEKDLKAKGIHEIFCIAVN---DAFVMEAWCRKNNAE 91 (156)
Q Consensus 51 ~l~~l~~~~~~~~~~~~~~v~~is~d---~~~~~~~~~~~~~~~ 91 (156)
.+|.-.+..+.+++.|.. ++.+|-+ +++...+..+..|++
T Consensus 15 ~ipga~e~l~~L~~~g~~-~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKP-VVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp E-TTHHHHHHHHHHTTSE-EEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cCcCHHHHHHHHHHcCCC-EEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 467777888888888888 8888765 456666667788877
No 316
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=33.00 E-value=1.6e+02 Score=22.61 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=51.3
Q ss_pred CCcceecccCCCceeehhhHh-----CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC---HHH
Q psy5399 9 LPDALLHENTPQTKIQIADAI-----KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND---AFV 80 (156)
Q Consensus 9 ~P~f~l~~~~~g~~~~l~~~~-----~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~---~~~ 80 (156)
.|.--+. |.|++.++-+.+. .|++.==-.| ..|.--.....+|...++.+.+.+.|+. ++.||.-+ .+.
T Consensus 74 kp~AVV~-DIDeTvLdns~y~~~~~~~~~~~~~~~w-~~wv~~~~a~~ipGA~e~L~~L~~~G~~-v~iVTnR~~~~~~~ 150 (266)
T TIGR01533 74 KKYAIVL-DLDETVLDNSPYQGYQVLNNKPFDPETW-DKWVQAAQAKPVAGALDFLNYANSKGVK-IFYVSNRSEKEKAA 150 (266)
T ss_pred CCCEEEE-eCccccccChHHHHHHhcCCCcCCHHHH-HHHHHcCCCCcCccHHHHHHHHHHCCCe-EEEEeCCCcchHHH
Confidence 3666666 6888888777531 2332000012 3344444444568888999999999999 88888644 455
Q ss_pred HHHHHHHcCCC
Q psy5399 81 MEAWCRKNNAE 91 (156)
Q Consensus 81 ~~~~~~~~~~~ 91 (156)
..++++++|++
T Consensus 151 T~~~Lkk~Gi~ 161 (266)
T TIGR01533 151 TLKNLKRFGFP 161 (266)
T ss_pred HHHHHHHcCcC
Confidence 66888888886
No 317
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=32.81 E-value=13 Score=23.66 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.1
Q ss_pred eeEEEEEeCCcEEEEEEccCC
Q psy5399 123 KRYSMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 123 ~~~~~iid~G~I~~~~~~~~~ 143 (156)
.+..|+.|+|+|++.+-++..
T Consensus 24 a~hgflfddg~~vw~e~~d~~ 44 (111)
T PF02484_consen 24 ARHGFLFDDGDIVWSEDDDET 44 (111)
T ss_pred cccceEecCCcEEEecCChHH
Confidence 344799999999998766544
No 318
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=32.78 E-value=1.7e+02 Score=20.34 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=19.3
Q ss_pred CCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcC
Q psy5399 43 FTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNN 89 (156)
Q Consensus 43 ~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~ 89 (156)
+||+|.. +..+- ++.++. +--+..+ +++..++..+..+
T Consensus 15 t~~~C~~--ak~iL------~~~~V~-~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 15 TFEDCNN--VRAIL------ESFRVK-FDERDVSMDSGFREELRELLG 53 (147)
T ss_pred cChhHHH--HHHHH------HHCCCc-EEEEECCCCHHHHHHHHHHhC
Confidence 7999983 33333 334676 6555554 3333334444433
No 319
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=32.65 E-value=1.3e+02 Score=18.73 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHcCCCEEEEEecCC----HHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 60 KDLKAKGIHEIFCIAVND----AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 60 ~~~~~~~~~~v~~is~d~----~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
+..+...+. ++.|+.|. ......+++.++.+ +. ......++++..|+..
T Consensus 18 kaIk~gkak-LViiA~Da~~~~~k~i~~~c~~~~Vp--v~-~~~t~~eLG~A~G~~v 70 (82)
T PRK13601 18 KAITNCNVL-QVYIAKDAEEHVTKKIKELCEEKSIK--IV-YIDTMKELGVMCGIDV 70 (82)
T ss_pred HHHHcCCee-EEEEeCCCCHHHHHHHHHHHHhCCCC--EE-EeCCHHHHHHHHCCcc
Confidence 444545566 77787774 34455667777877 73 3444578999999865
No 320
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=32.63 E-value=1.3e+02 Score=18.90 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=44.6
Q ss_pred cCCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEE
Q psy5399 17 NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF 96 (156)
Q Consensus 17 ~~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~ 96 (156)
+.+++-+++.. +++.+|+.|= . -..=.+....+.+.+.. .-.|-.=+++.+..||+++|+. +.+
T Consensus 10 ~~~eGI~si~~--~~~~~Vl~FE--------~---edDA~RYa~lLEAqd~~-~p~Ve~id~~~i~~fC~~~gy~--~~i 73 (86)
T PF11360_consen 10 TETEGIYSIQN--KDRNVVLMFE--------D---EDDAERYAGLLEAQDFP-DPTVEEIDPEEIEEFCRSAGYE--YEI 73 (86)
T ss_pred CCCCcEEEEEe--CCCCEEEEEc--------c---HHHHHHHHHHHHhcCCC-CCCeEEECHHHHHHHHHHCCce--EEE
Confidence 34567788875 5677888872 1 23444455555555555 4444444788999999999998 887
Q ss_pred EecC
Q psy5399 97 LADP 100 (156)
Q Consensus 97 ~~D~ 100 (156)
+...
T Consensus 74 v~~g 77 (86)
T PF11360_consen 74 VPPG 77 (86)
T ss_pred ECCC
Confidence 7643
No 321
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.37 E-value=53 Score=21.33 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=22.0
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHH
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 83 (156)
+++.+..+..+++|+. +++|+.+....+.+
T Consensus 60 ~e~~~~~~~a~~~g~~-vi~iT~~~~s~la~ 89 (126)
T cd05008 60 ADTLAALRLAKEKGAK-TVAITNVVGSTLAR 89 (126)
T ss_pred HHHHHHHHHHHHcCCe-EEEEECCCCChHHH
Confidence 6777888888888888 88888765444444
No 322
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.35 E-value=1e+02 Score=19.85 Aligned_cols=50 Identities=20% Similarity=0.084 Sum_probs=35.4
Q ss_pred HhHHHHHHcCCCEEEEEecC----CHHHHHHHHHHcCCCcceEEEecCCchhHHhhC
Q psy5399 57 AKEKDLKAKGIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 109 (156)
Q Consensus 57 ~~~~~~~~~~~~~v~~is~d----~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~g 109 (156)
+..+.+++.|++ +-.+..- +.+++.+|++..+.+ +.-+....+..++.++
T Consensus 11 ka~~~L~~~gi~-~~~~d~~k~p~s~~el~~~l~~~~~~--~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 11 KALKWLEENGIE-YEFIDYKKEPLSREELRELLSKLGNG--PDDLINTRSKTYKELG 64 (110)
T ss_dssp HHHHHHHHTT---EEEEETTTS---HHHHHHHHHHHTSS--GGGGB-TTSHHHHHTT
T ss_pred HHHHHHHHcCCC-eEeehhhhCCCCHHHHHHHHHHhccc--HHHHhcCccchHhhhh
Confidence 455566777888 8777753 578899999999977 6655667788888888
No 323
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=32.18 E-value=1.4e+02 Score=21.47 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=31.0
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...++.+.+++.|+. +..+|....+.++..++..++.
T Consensus 89 ~~G~~~~L~~L~~~g~~-~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGIK-VALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHHhhhh
Confidence 46777888888888888 8788888888888888878764
No 324
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=31.54 E-value=69 Score=21.06 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=20.7
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecC-----------CHHHHHHHHHHcC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVN-----------DAFVMEAWCRKNN 89 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d-----------~~~~~~~~~~~~~ 89 (156)
+..++..+++| |+. +++++.| ++++..+++.++-
T Consensus 33 ~a~lr~W~er~---ga~-i~~i~~d~le~~v~~pP~~~~ea~~lA~E~y 77 (111)
T PF14062_consen 33 IAVLRYWEERY---GAE-IVGIGFDTLELSVARPPQTPEEAEALAAEHY 77 (111)
T ss_pred HHHHHHHHHHh---CEE-EEEEECCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 33344444444 777 8898776 3467777777663
No 325
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=31.54 E-value=1.1e+02 Score=27.04 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=13.5
Q ss_pred HhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCC
Q psy5399 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 90 (156)
Q Consensus 57 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 90 (156)
+..+++++.|+. ++-+|.|.+...++.+++.|+
T Consensus 452 eai~~Lr~~GI~-vvMiTGDn~~TA~aIA~elGI 484 (679)
T PRK01122 452 ERFAELRKMGIK-TVMITGDNPLTAAAIAAEAGV 484 (679)
T ss_pred HHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCC
Confidence 333333444443 444444444444444444443
No 326
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=31.54 E-value=1.3e+02 Score=18.64 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCCCc-ceEEEecCCchhHHhhCCe
Q psy5399 77 DAFVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~f~~~~D~~~~~~~~~gv~ 111 (156)
++++.+++++++++.. .+|-+...| -+++.||+.
T Consensus 19 s~eE~~~lL~~y~i~~~qLP~I~~~D-Pv~r~~g~k 53 (79)
T PRK09570 19 SEEEAKKLLKEYGIKPEQLPKIKASD-PVVKAIGAK 53 (79)
T ss_pred CHHHHHHHHHHcCCCHHHCCceeccC-hhhhhcCCC
Confidence 6788888999998765 466444433 366777874
No 327
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=31.52 E-value=20 Score=20.87 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=23.7
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCC-EEEEEecCCH-HHHHHHHHHcCCCcceEEEecCC
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIH-EIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~-~v~~is~d~~-~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
...||.|.. ...+ ++..|+. +++-+..... .....+.+.+... .+|++.+.+
T Consensus 6 ~~~~~~~~~--v~~~------l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~-~vP~l~~~~ 59 (74)
T cd03045 6 LPGSPPCRA--VLLT------AKALGLELNLKEVNLMKGEHLKPEFLKLNPQH-TVPTLVDNG 59 (74)
T ss_pred CCCCCcHHH--HHHH------HHHcCCCCEEEEecCccCCcCCHHHHhhCcCC-CCCEEEECC
Confidence 556887762 2111 1233554 1444443222 2223445444443 388887654
No 328
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=31.26 E-value=2.2e+02 Score=21.55 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=40.3
Q ss_pred cCCcceecccCCC--ceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEec
Q psy5399 8 TLPDALLHENTPQ--TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAV 75 (156)
Q Consensus 8 ~~P~f~l~~~~~g--~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~ 75 (156)
.+|.|-.. +..| ..+.+.. +.|++|++.- |....+=. ..+.........++..|++.+++.+.
T Consensus 27 ~ip~fp~~-tv~gH~g~l~~G~-l~g~~V~~l~--Gr~H~yeg-~~~~~v~~~i~al~~lGv~~ii~tna 91 (237)
T TIGR01698 27 EIPGFPAP-TVSGHAGELIRVR-IGDGPVLVLG--GRTHAYEG-GDARAVVHPVRTARATGAETLILTNA 91 (237)
T ss_pred cCCCCCCC-cccCccceEEEEE-ECCEEEEEEc--CCCcccCC-CcHHHhHHHHHHHHHcCCCEEEEEcc
Confidence 36666665 4444 4588888 6888766554 55455444 33455566777788999997766643
No 329
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=30.81 E-value=1.4e+02 Score=22.39 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=32.9
Q ss_pred ChhhHHHhHHHHHHcCCCEEEEEecCCH---HHHHHHHHHcCCCc
Q psy5399 51 HLPGYLAKEKDLKAKGIHEIFCIAVNDA---FVMEAWCRKNNAEG 92 (156)
Q Consensus 51 ~l~~l~~~~~~~~~~~~~~v~~is~d~~---~~~~~~~~~~~~~~ 92 (156)
.+|.-.++++.++++|+. |+.+|.=+. +...+++.+.|++.
T Consensus 121 aip~al~l~~~l~~~G~~-Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 121 ALPEGLKLYQKIIELGIK-IFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred CCHHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 578889999999999999 998886443 34678888888874
No 330
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=30.79 E-value=1.8e+02 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=34.3
Q ss_pred HHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 55 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 55 l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
-.+..++++++|+. |+..|.-+..++..+.++.++. .|+++...
T Consensus 23 a~~aL~~Lk~~GI~-vVlaTGRt~~ev~~l~~~Lgl~--~p~I~eNG 66 (302)
T PRK12702 23 ARQALAALERRSIP-LVLYSLRTRAQLEHLCRQLRLE--HPFICEDG 66 (302)
T ss_pred HHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHhCCC--CeEEEeCC
Confidence 44566777788998 8888888888999999999987 67666544
No 331
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.67 E-value=58 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.040 Sum_probs=26.0
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~ 63 (156)
.+++-|.+|.-.-||+|-.- -+.|.++..++.
T Consensus 3 ~~~i~I~v~sD~vCPwC~ig-~~rL~ka~~~~~ 34 (225)
T COG2761 3 PMKIEIDVFSDVVCPWCYIG-KRRLEKALAEYP 34 (225)
T ss_pred CceEEEEEEeCCcCchhhcC-HHHHHHHHHhcC
Confidence 35677888878889999975 599999988886
No 332
>KOG0713|consensus
Probab=30.58 E-value=20 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHcCCCcceEEEecCC-chhHHhhC
Q psy5399 75 VNDAFVMEAWCRKNNAEGKIRFLADPN-LEFTKKLG 109 (156)
Q Consensus 75 ~d~~~~~~~~~~~~~~~~~f~~~~D~~-~~~~~~~g 109 (156)
+|+|.++..|++-.. - |.+|+|++ ++.+.+||
T Consensus 50 pddp~A~e~F~~in~-A--YEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 50 PDDPNANEKFKEINA-A--YEVLSDPEKRKHYDTYG 82 (336)
T ss_pred CCCHHHHHHHHHHHH-H--HHHhcCHHHHHHHHhhh
Confidence 358888888776544 3 99999998 67777776
No 333
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=30.47 E-value=1.5e+02 Score=20.04 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=27.1
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCC---H------------HHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVND---A------------FVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~---~------------~~~~~~~~~~~~~ 91 (156)
+...+..+++++.|.. |+.+|.-+ . ....+|+.+++++
T Consensus 27 ~~~ie~L~~l~~~G~~-IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 27 LAVIEKLRHYKALGFE-IVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 5556667777778888 88777432 1 2668899999988
No 334
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=30.38 E-value=1.9e+02 Score=20.13 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=28.7
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCC-HHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~-~~~~~~~~~~~~~~ 91 (156)
.|.+.+..+.+++.|.. ++.+|..+ ....+.+.+..++.
T Consensus 45 ~pgv~e~L~~Lk~~g~~-l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 45 YPALRDWIEELKAAGRK-LLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred ChhHHHHHHHHHHcCCE-EEEEeCCchHHHHHHHHHHcCCE
Confidence 47778888889988988 88888776 45555666666654
No 335
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=30.36 E-value=2.5e+02 Score=21.40 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=15.1
Q ss_pred HHHHHcCCCEEEEEecC-----CHHHHHHHHHHcCCC
Q psy5399 60 KDLKAKGIHEIFCIAVN-----DAFVMEAWCRKNNAE 91 (156)
Q Consensus 60 ~~~~~~~~~~v~~is~d-----~~~~~~~~~~~~~~~ 91 (156)
+.+++.|.. ++.++.. +.++..+..++.+..
T Consensus 47 ~~i~~~g~~-v~~~~~~~~~~~d~~~~~~~l~~~~~d 82 (279)
T TIGR03590 47 DLLLSAGFP-VYELPDESSRYDDALELINLLEEEKFD 82 (279)
T ss_pred HHHHHcCCe-EEEecCCCchhhhHHHHHHHHHhcCCC
Confidence 344556666 6666542 233344555554433
No 336
>KOG1615|consensus
Probab=30.25 E-value=1.9e+02 Score=21.54 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|.+.++...++++|++ |+.||..=..-..--+.+.+++
T Consensus 91 ~Gi~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred CCHHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCc
Confidence 7777888888999999 9999987544444455566666
No 337
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.05 E-value=46 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=22.3
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHH
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEA 83 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~ 83 (156)
+++.+..+..+++|+. +++|+.+....+.+
T Consensus 61 ~~~~~~~~~a~~~g~~-vi~iT~~~~s~la~ 90 (128)
T cd05014 61 DELLNLLPHLKRRGAP-IIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHHHHHHHCCCe-EEEEeCCCCCchhh
Confidence 7777777888888888 88888765554444
No 338
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=29.99 E-value=1.7e+02 Score=21.30 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=31.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
.|...++.+.+++.|+. +..+|..+....+...+..++..-|.++
T Consensus 97 ~pg~~~~L~~L~~~g~~-l~i~Tn~~~~~~~~~l~~~~l~~~f~~i 141 (229)
T PRK13226 97 FDGVEGMLQRLECAGCV-WGIVTNKPEYLARLILPQLGWEQRCAVL 141 (229)
T ss_pred CCCHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCchhcccEE
Confidence 46667777788888887 6667776766667777888765335543
No 339
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=29.96 E-value=1.3e+02 Score=21.71 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=32.0
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCc
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 92 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~ 92 (156)
.|...++.+.++++|.. +..+|......++.+.+..++..
T Consensus 94 ~~g~~~~l~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~~ 133 (222)
T PRK10826 94 LPGVREALALCKAQGLK-IGLASASPLHMLEAVLTMFDLRD 133 (222)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCcHHHHHHHHHhCcchh
Confidence 46777788888888988 88888888888888888888643
No 340
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=29.57 E-value=2e+02 Score=20.40 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=33.7
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF 96 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~ 96 (156)
.|...++.+.+++.|+. +..+|......++...+..++..-|..
T Consensus 77 ~~g~~~~L~~L~~~g~~-~~i~Sn~~~~~~~~~l~~~~l~~~f~~ 120 (205)
T TIGR01454 77 FPGVPELLAELRADGVG-TAIATGKSGPRARSLLEALGLLPLFDH 120 (205)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEeCCchHHHHHHHHHcCChhheee
Confidence 58888888999988988 877887777777777888887432453
No 341
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=29.25 E-value=1.3e+02 Score=26.57 Aligned_cols=36 Identities=11% Similarity=0.305 Sum_probs=18.0
Q ss_pred hHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCC
Q psy5399 54 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 90 (156)
Q Consensus 54 ~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 90 (156)
+..+..+++++.|++ ++-++.|.+...++.+++.|+
T Consensus 445 ~a~e~I~~Lr~~GI~-vvMiTGDn~~TA~aIA~elGI 480 (673)
T PRK14010 445 GLVERFRELREMGIE-TVMCTGDNELTAATIAKEAGV 480 (673)
T ss_pred HHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCC
Confidence 344444444555555 555555555555555555554
No 342
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=29.23 E-value=51 Score=20.54 Aligned_cols=20 Identities=20% Similarity=0.657 Sum_probs=15.2
Q ss_pred EEEEe-CCcEEEEEEccCCCc
Q psy5399 126 SMVVD-DGKITQLNIEPDGTG 145 (156)
Q Consensus 126 ~~iid-~G~I~~~~~~~~~~~ 145 (156)
++.++ +|+|+.+.+++....
T Consensus 33 ~V~v~g~g~v~~i~i~~~~~~ 53 (93)
T PF02575_consen 33 TVTVNGNGEVVDIEIDPSALR 53 (93)
T ss_dssp EEEEETTS-EEEEEE-GGGGC
T ss_pred EEEEecCceEEEEEEehHhhc
Confidence 68888 999999999987664
No 343
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.21 E-value=23 Score=28.68 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHcCCCcceEEEecCC-chhHHhhCCee
Q psy5399 77 DAFVMEAWCRKNNAEGKIRFLADPN-LEFTKKLGVEH 112 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~D~~-~~~~~~~gv~~ 112 (156)
++++.++|.+-... |.+|+|++ +..+.+||-..
T Consensus 40 ~~~AeeKFKEI~eA---YEVLsD~eKRa~YD~fG~~~ 73 (371)
T COG0484 40 DKEAEEKFKEINEA---YEVLSDPEKRAAYDQFGHAG 73 (371)
T ss_pred CHHHHHHHHHHHHH---HHHhCCHHHHHHhhccCccc
Confidence 56666777666553 88899997 67777777654
No 344
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=28.94 E-value=1.9e+02 Score=19.67 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=31.9
Q ss_pred hhHHHhHHHHHHcCCCEEE--EEecCCHHHHHHHHHHcCCCc-ceEEEecCCchhHHhhCCee
Q psy5399 53 PGYLAKEKDLKAKGIHEIF--CIAVNDAFVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~--~is~d~~~~~~~~~~~~~~~~-~f~~~~D~~~~~~~~~gv~~ 112 (156)
..|+.+..+.++.|+. ++ |+-.++-.+..+...+..-.. +..+..||. +-++|+|..
T Consensus 12 ~~Lk~l~~~a~~~g~~-~VlRG~~~~~~~~T~~~i~~L~~~~~~~~v~IdP~--lF~~f~I~~ 71 (130)
T TIGR02742 12 PLLKQLLDQAEALGAP-LVIRGLLDNGFKATATRIQSLIKDGGKSGVQIDPQ--WFKQFDITA 71 (130)
T ss_pred HHHHHHHHHHHHhCCe-EEEeCCCCCCHHHHHHHHHHHHhcCCCCcEEEChH--HHhhcCceE
Confidence 5677777777766765 43 333344444443333332111 155667764 889999964
No 345
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=28.71 E-value=2.2e+02 Score=20.93 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=32.5
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
+.-.+..+++++.|+. ++..|.-++.....+.++.++. -++++
T Consensus 18 ~~~~~ai~~l~~~G~~-~vi~TgR~~~~~~~~~~~lg~~--~~~I~ 60 (225)
T TIGR02461 18 GPAREALEELKDLGFP-IVFVSSKTRAEQEYYREELGVE--PPFIV 60 (225)
T ss_pred hHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHHcCCC--CcEEE
Confidence 4445666677788998 8878888888888899999976 45554
No 346
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=28.43 E-value=1.6e+02 Score=22.52 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=30.5
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCH
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDA 78 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~ 78 (156)
|.+++.++- |.. . ....++.....+.+.|+..|+++..|.+
T Consensus 58 g~~~i~Hlt----~r~-~--n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 58 GIPTVPHLT----CIG-A--TREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred CCCeeEEee----ecC-C--CHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 667888874 443 2 3467888888888999999999987754
No 347
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=28.29 E-value=1.9e+02 Score=20.79 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=30.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEec
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
+...+..++++++|+. |+..|.-+....+.+.+..+++ -++++.
T Consensus 23 ~~~~~al~~l~~~G~~-~~iaTGR~~~~~~~~~~~l~~~--~~~i~~ 66 (230)
T PRK01158 23 LKAVEAIRKAEKLGIP-VILATGNVLCFARAAAKLIGTS--GPVIAE 66 (230)
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHhCCC--CcEEEe
Confidence 4556667777888988 7777776777777777888776 444443
No 348
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=28.04 E-value=1.5e+02 Score=21.24 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=32.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|...++.+.+++.|.. +..+|......+....+..++..-|.
T Consensus 96 ~~g~~~~L~~L~~~g~~-~~i~Tn~~~~~~~~~l~~~~l~~~f~ 138 (221)
T TIGR02253 96 YPGVRDTLMELRESGYR-LGIITDGLPVKQWEKLERLGVRDFFD 138 (221)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHHhCChHHhcc
Confidence 46777888888888888 88888877777777888888753243
No 349
>PHA00649 hypothetical protein
Probab=27.94 E-value=36 Score=20.56 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=22.1
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 89 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~ 89 (156)
|.-++.+.+--.+-+. ++++..|+|++.++|.+..-
T Consensus 9 pacqEAA~rAV~~~~~-~LGVD~~~P~~VEEFr~D~~ 44 (83)
T PHA00649 9 PACQEAADRAVKKVFA-ILGVDVDVPEQVEEFREDLR 44 (83)
T ss_pred hHHHHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Confidence 4444444443333344 67778899998888776543
No 350
>PRK04011 peptide chain release factor 1; Provisional
Probab=27.69 E-value=1e+02 Score=25.35 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=15.2
Q ss_pred hHHHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 54 GYLAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 54 ~l~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
.+..+.+...+.|.. |..||.++++
T Consensus 368 ~v~~l~e~a~~~g~~-v~iis~~~e~ 392 (411)
T PRK04011 368 IIEELSELAEQSGTK-VEVISTDTEE 392 (411)
T ss_pred HHHHHHHHHHHcCCE-EEEECCCChh
Confidence 344455666666776 7777766544
No 351
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=27.49 E-value=1.8e+02 Score=21.66 Aligned_cols=52 Identities=8% Similarity=-0.024 Sum_probs=39.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHh
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 107 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~ 107 (156)
+...+..++.+++|+. |+..+.-+...++.+.++.+.. .++++.-...+...
T Consensus 23 ~~~~~al~~~~~~g~~-v~iaTGR~~~~~~~~~~~l~~~--~~~I~~NGa~i~~~ 74 (264)
T COG0561 23 PETKEALARLREKGVK-VVLATGRPLPDVLSILEELGLD--GPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCChHHHHHHHHHcCCC--ccEEEeCCeEEecC
Confidence 6666777788899998 8888888888999999999988 56666544444333
No 352
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=27.46 E-value=1.5e+02 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=33.7
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..|+.+++.+.+.|+. ++....++.+.+.+++++.+.+
T Consensus 55 ~sL~~L~~~L~~~gi~-L~v~~~~~~~~l~~~~~~~~~~ 92 (461)
T COG0415 55 QSLQALQQSLAELGIP-LLVREGDPEQVLPELAKQLAAT 92 (461)
T ss_pred HHHHHHHHHHHHcCCc-eEEEeCCHHHHHHHHHHHhCcc
Confidence 4588899999999999 9999999999999999999954
No 353
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=27.33 E-value=1.4e+02 Score=26.54 Aligned_cols=38 Identities=5% Similarity=0.036 Sum_probs=33.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|+..+..+++++.|+. ++-++.|.+...++.+++.|+.
T Consensus 445 ~~a~~aI~~l~~aGI~-v~miTGD~~~tA~~IA~~lGI~ 482 (755)
T TIGR01647 445 HDTKETIERARHLGVE-VKMVTGDHLAIAKETARRLGLG 482 (755)
T ss_pred hhHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCCC
Confidence 5666778888999999 9999999999999999999986
No 354
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=27.29 E-value=2.2e+02 Score=20.99 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=31.7
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEe
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~ 98 (156)
+.-.+..++++++|+. ++..|..+....+...++.++. .++++
T Consensus 19 ~~~~~~i~~l~~~G~~-~~iaTGR~~~~~~~~~~~~~~~--~~~I~ 61 (256)
T TIGR00099 19 PSTKEALAKLREKGIK-VVLATGRPYKEVKNILKELGLD--TPFIT 61 (256)
T ss_pred HHHHHHHHHHHHCCCe-EEEEeCCCHHHHHHHHHHcCCC--CCEEE
Confidence 4445667777888998 8878888888888888888876 44444
No 355
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=27.29 E-value=1.3e+02 Score=24.93 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=30.1
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecC------CHHHHHHHHHHcCCCc-ceEEEecCC--chhHHhhCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVN------DAFVMEAWCRKNNAEG-KIRFLADPN--LEFTKKLGV 110 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d------~~~~~~~~~~~~~~~~-~f~~~~D~~--~~~~~~~gv 110 (156)
|-..-+.+.|++.|+. +++=|.. +..-.++|+++++++. .|....|.+ ..+.+++|.
T Consensus 74 pL~~GvvD~l~~~Gi~-vFGPsk~AA~lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~ 139 (428)
T COG0151 74 PLVAGVVDALRAAGIP-VFGPTKAAAQLEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGA 139 (428)
T ss_pred HHhhhhHHHHHHCCCc-eeCcCHHHHHHHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCC
Confidence 3333444445555555 4444432 3444677888888774 366666554 334444443
No 356
>PRK10200 putative racemase; Provisional
Probab=27.15 E-value=1.8e+02 Score=21.65 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=32.0
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.+.|.+..+.+.+.|++ +++|..++.-..-...++ ..+ +|+++=.+
T Consensus 61 ~~~l~~~~~~L~~~g~~-~iviaCNTah~~~~~l~~-~~~--iPii~ii~ 106 (230)
T PRK10200 61 GDILAEAALGLQRAGAE-GIVLCTNTMHKVADAIES-RCS--LPFLHIAD 106 (230)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCchHHHHHHHHHH-hCC--CCEeehHH
Confidence 57888888999999999 999999986444333333 234 67776333
No 357
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=27.03 E-value=1.4e+02 Score=22.41 Aligned_cols=37 Identities=11% Similarity=-0.053 Sum_probs=25.1
Q ss_pred hHHHhHHHHHHcCCCEEEEEecC---CHH-HHHHHHHHcCCC
Q psy5399 54 GYLAKEKDLKAKGIHEIFCIAVN---DAF-VMEAWCRKNNAE 91 (156)
Q Consensus 54 ~l~~~~~~~~~~~~~~v~~is~d---~~~-~~~~~~~~~~~~ 91 (156)
...++.+.++++|+. ++.||.- ..+ ..+..++.++++
T Consensus 118 Ga~elL~~L~~~G~~-I~iVTnR~~~k~~~t~~~Llk~~gip 158 (237)
T PRK11009 118 VARQLIDMHVKRGDS-IYFITGRTATKTETVSKTLADDFHIP 158 (237)
T ss_pred HHHHHHHHHHHCCCe-EEEEeCCCCcccHHHHHHHHHHcCCC
Confidence 378888888899998 8888862 233 334444457773
No 358
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=26.96 E-value=76 Score=19.35 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.9
Q ss_pred EEEEe-CCcEEEEE
Q psy5399 126 SMVVD-DGKITQLN 138 (156)
Q Consensus 126 ~~iid-~G~I~~~~ 138 (156)
.+++| +|+|+++.
T Consensus 14 i~~~d~~g~I~~~N 27 (113)
T PF00989_consen 14 IFVIDEDGRILYVN 27 (113)
T ss_dssp EEEEETTSBEEEEC
T ss_pred EEEEeCcCeEEEEC
Confidence 67778 99999984
No 359
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=26.84 E-value=2.2e+02 Score=20.35 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=26.0
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+...+..+++++.|+. ++..|.-+....+.+.+..+.+
T Consensus 18 ~~~~~al~~l~~~Gi~-~~~aTGR~~~~~~~~~~~l~~~ 55 (225)
T TIGR01482 18 ESALEAIRKAESVGIP-VVLVTGNSVQFARALAKLIGTP 55 (225)
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCCchHHHHHHHHHhCCC
Confidence 3444556667778887 7766666677777777777755
No 360
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=26.82 E-value=1.5e+02 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=14.3
Q ss_pred HhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCC
Q psy5399 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 90 (156)
Q Consensus 57 ~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 90 (156)
+..+++++.|++ ++-+|.|.+...++.+++.|+
T Consensus 453 eaI~~l~~~Gi~-v~miTGD~~~ta~~iA~~lGI 485 (675)
T TIGR01497 453 ERFAQLRKMGIK-TIMITGDNRLTAAAIAAEAGV 485 (675)
T ss_pred HHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCC
Confidence 333444444444 444444444444444444443
No 361
>PRK01973 septum formation inhibitor; Reviewed
Probab=26.82 E-value=2.6e+02 Score=21.63 Aligned_cols=57 Identities=7% Similarity=0.023 Sum_probs=37.3
Q ss_pred hhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 26 ADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 26 ~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.++|++-|+||.+- ..-..+. -.|..+.+.+++.|+. .++|+.++ .++.++...++.
T Consensus 43 P~FF~~aPvVlDl~--~l~~~~~----~dl~~L~~~lr~~gl~-~VGV~g~~--~~~~~a~~~gL~ 99 (271)
T PRK01973 43 PEFFADDVVAIDVR--RLADDER----VPLDDIRQMLNDVRMR-PIGVVAQP--AQQGWAGEAGLP 99 (271)
T ss_pred hHhhcCCCEEEEch--HhCCCcc----cCHHHHHHHHHHCCCE-EEEEeCCH--HHHHHHHHcCCC
Confidence 35688889999983 3222222 2466777777888999 99999632 344566666654
No 362
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=26.74 E-value=2.1e+02 Score=21.24 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=32.5
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|.+.++.+.++++|+. +..+|......++...+..++..-|.
T Consensus 110 ~pgv~e~L~~L~~~g~~-l~I~Tn~~~~~~~~~l~~~gl~~~Fd 152 (248)
T PLN02770 110 LNGLYKLKKWIEDRGLK-RAAVTNAPRENAELMISLLGLSDFFQ 152 (248)
T ss_pred CccHHHHHHHHHHcCCe-EEEEeCCCHHHHHHHHHHcCChhhCc
Confidence 46777777888888888 77777778888888888888653243
No 363
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=26.74 E-value=1.3e+02 Score=17.14 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q psy5399 41 GAFTPGCS 48 (156)
Q Consensus 41 ~~~cp~C~ 48 (156)
..+||+|.
T Consensus 6 ~~~~p~~~ 13 (71)
T cd03037 6 YEHCPFCV 13 (71)
T ss_pred cCCCcHhH
Confidence 45699998
No 364
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=26.71 E-value=1.4e+02 Score=21.15 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=25.4
Q ss_pred EEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEEEEEEc
Q psy5399 95 RFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 140 (156)
Q Consensus 95 ~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~~~~~~ 140 (156)
.++.|..+..-.+|++... .-+.++.| +|+|.++.-+
T Consensus 128 q~vlD~~gvak~AWqL~e~---------~SaivVlDk~G~VkfvkeG 165 (184)
T COG3054 128 QFVLDSNGVAKNAWQLKEE---------SSAVVVLDKDGRVKFVKEG 165 (184)
T ss_pred eeEEccchhhhhhhccccc---------cceEEEEcCCCcEEEEecC
Confidence 3788988844448998642 11256668 9999998755
No 365
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=26.67 E-value=82 Score=21.84 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=18.5
Q ss_pred EEEEecCCHHHHHHHHHHcCCCcceEEEecCCch
Q psy5399 70 IFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 103 (156)
Q Consensus 70 v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~ 103 (156)
+++|..++.++-.+++.+.-++ +.++.|++++
T Consensus 30 LvGV~~~Dt~~~a~~l~~Ki~~--lRiF~D~~gK 61 (145)
T COG1490 30 LVGVTHDDTEEDADYLAEKILN--LRIFEDEEGK 61 (145)
T ss_pred EEeecCCCCHHHHHHHHHHHhc--eEeecCcccc
Confidence 4566665555555555555555 6677776544
No 366
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=26.57 E-value=1.3e+02 Score=25.63 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=47.2
Q ss_pred EeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCeeeccCC
Q psy5399 38 GVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVL 117 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~~~~~~ 117 (156)
||+..- |+..-+....++++-..+.... |++=. ..+.++.+|++.+.++ +...-|. |-+.-|.
T Consensus 338 fF~~~~---~r~~fl~~~~~l~ri~~~~~ar-ilaWG-~~~~~lv~~A~~h~iP--l~~~EDG---FlRSv~L------- 400 (671)
T COG3563 338 FFPVPR---CRLKFLNSTQKLARIKLKDDAR-ILAWG-NGKEALVEFAEQHHIP--LLRMEDG---FLRSVGL------- 400 (671)
T ss_pred cccCCC---ceEEEccchHHHHHHhcCcCce-EEEec-CCcHHHHHHHHHhCCC--eeeeccc---ceeeccc-------
Confidence 554443 4433355666666655555666 66555 7889999999998877 6666553 4444444
Q ss_pred CcceeeeEEEEEe
Q psy5399 118 GGWRSKRYSMVVD 130 (156)
Q Consensus 118 ~~~~~~~~~~iid 130 (156)
|...+.|...+.|
T Consensus 401 Gs~ltPPlSLv~D 413 (671)
T COG3563 401 GSNLTPPLSLVLD 413 (671)
T ss_pred cccCCCCeeEEEc
Confidence 4345555567776
No 367
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=26.54 E-value=1.2e+02 Score=22.90 Aligned_cols=39 Identities=10% Similarity=-0.028 Sum_probs=25.3
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
...|.....++.+.|+. |+|+..|-.........+.|++
T Consensus 195 ~~~l~~iI~~l~~~g~~-VvAivsD~g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYN-VVAIVSDMGSNNISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHCCCE-EEEEECCCCcchHHHHHHcCCC
Confidence 35666777778888888 8888777554444445555543
No 368
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.54 E-value=2.7e+02 Score=20.55 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=28.7
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEE--EEecC---------CHHHHHHHHHHcCCC
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIF--CIAVN---------DAFVMEAWCRKNNAE 91 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~--~is~d---------~~~~~~~~~~~~~~~ 91 (156)
.++|+. +|.+|.. ..+..+. +.|++ +. .-+++ -.+++.+|+++++++
T Consensus 5 kiLlH~----CCAPcs~---y~le~l~----~~~~~-i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~ 62 (204)
T COG1636 5 KLLLHS----CCAPCSG---YVLEKLR----DSGIK-ITIYFYNPNIHPLSEYELRKEEVKRFAEKFGIN 62 (204)
T ss_pred eeEEEe----ecCCCcH---HHHHHHH----hcCcc-eEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCe
Confidence 366665 6999993 3444433 33566 43 33343 146678899999977
No 369
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.36 E-value=1.5e+02 Score=17.67 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=33.5
Q ss_pred hhhHHHhHHHHHHcCCCEEEE-EecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFC-IAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~-is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.....++++.+++.|+. +.. .+..+...+-+++.+.|.+ |-++.+.+
T Consensus 14 ~~~a~~~~~~Lr~~g~~-v~~d~~~~~~~~~~~~a~~~g~~--~~iiig~~ 61 (91)
T cd00860 14 LDYAKEVAKKLSDAGIR-VEVDLRNEKLGKKIREAQLQKIP--YILVVGDK 61 (91)
T ss_pred HHHHHHHHHHHHHCCCE-EEEECCCCCHHHHHHHHHHcCCC--EEEEECcc
Confidence 44556778888888887 543 3445677777888888888 88777654
No 370
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=26.10 E-value=32 Score=18.75 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=4.9
Q ss_pred CCCCCc
Q psy5399 44 TPGCSV 49 (156)
Q Consensus 44 cp~C~~ 49 (156)
||+|..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 899974
No 371
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=26.01 E-value=1.4e+02 Score=17.28 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=22.8
Q ss_pred CCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecC
Q psy5399 41 GAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP 100 (156)
Q Consensus 41 ~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~ 100 (156)
...||+|+. +. ..+..+|+. .-.+..+... ...+ +..+.. ..|++.+.
T Consensus 7 ~~~~p~c~k--v~------~~L~~~gi~-y~~~~~~~~~-~~~~-~~~~~~-~vP~l~~~ 54 (77)
T cd03040 7 YKTCPFCCK--VR------AFLDYHGIP-YEVVEVNPVS-RKEI-KWSSYK-KVPILRVE 54 (77)
T ss_pred cCCCHHHHH--HH------HHHHHCCCc-eEEEECCchh-HHHH-HHhCCC-ccCEEEEC
Confidence 456998883 22 223445666 4444444322 1222 223322 27777644
No 372
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=26.00 E-value=2.1e+02 Score=21.53 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=13.1
Q ss_pred cCCCcceEEEecCCc----hhHHhhCCe
Q psy5399 88 NNAEGKIRFLADPNL----EFTKKLGVE 111 (156)
Q Consensus 88 ~~~~~~f~~~~D~~~----~~~~~~gv~ 111 (156)
.+.. +-++||.+. .+-+.+|+.
T Consensus 88 ~~~~--~~IiSDaNs~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 88 RGFD--LIIISDANSFFIETILEHHGLR 113 (234)
T ss_pred CCce--EEEEeCCcHhHHHHHHHhCCCc
Confidence 4555 778888773 334445553
No 373
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=25.99 E-value=85 Score=18.47 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=17.0
Q ss_pred HHcCCC-EEEEEecCCHHH-HHHHHHHcCCCcceEEEecCC
Q psy5399 63 KAKGIH-EIFCIAVNDAFV-MEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 63 ~~~~~~-~v~~is~d~~~~-~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.++|+. +++.+.....+. ...|.+-+... .+|++.|.+
T Consensus 20 ~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g-~vP~L~~~g 59 (73)
T cd03052 20 AEKGLRCEEYDVSLPLSEHNEPWFMRLNPTG-EVPVLIHGD 59 (73)
T ss_pred HHcCCCCEEEEecCCcCccCCHHHHHhCcCC-CCCEEEECC
Confidence 344554 245444322221 22344444433 388887754
No 374
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=25.91 E-value=2.1e+02 Score=19.62 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=26.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+...++.+.+++.|+. +..+|......++...+.+++.
T Consensus 75 ~g~~~ll~~l~~~g~~-~~i~S~~~~~~~~~~l~~~~l~ 112 (188)
T TIGR01489 75 PGFKEFIAFIKEHGID-FIVISDGNDFFIDPVLEGIGEK 112 (188)
T ss_pred ccHHHHHHHHHHcCCc-EEEEeCCcHHHHHHHHHHcCCh
Confidence 5566667777777877 7777777677677777777654
No 375
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=25.51 E-value=93 Score=26.25 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=23.3
Q ss_pred hHHHhHHHHHHcCCCEEEEEecC------------------CHHHHHHHHHHc
Q psy5399 54 GYLAKEKDLKAKGIHEIFCIAVN------------------DAFVMEAWCRKN 88 (156)
Q Consensus 54 ~l~~~~~~~~~~~~~~v~~is~d------------------~~~~~~~~~~~~ 88 (156)
-|.+..++|++.|+. |.+||++ +++.++.|.+.+
T Consensus 209 Y~vkfi~aY~~~GI~-i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~ 260 (496)
T PF02055_consen 209 YFVKFIQAYKKEGIP-IWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNY 260 (496)
T ss_dssp HHHHHHHHHHCTT---ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCC-eEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 456667888999999 9999874 256677787763
No 376
>PRK10853 putative reductase; Provisional
Probab=25.37 E-value=1.3e+02 Score=19.92 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=29.2
Q ss_pred HHHHHcCCCEEEEEec----CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 60 KDLKAKGIHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 60 ~~~~~~~~~~v~~is~----d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
+.+.+.|+. +-.+.. =+.+.+++|+++.|+. - +....+..++.++..
T Consensus 18 ~~L~~~~i~-~~~~d~~k~p~s~~eL~~~l~~~g~~--~--l~n~~~~~~r~L~~~ 68 (118)
T PRK10853 18 RWLEAQGID-YRFHDYRVDGLDSELLQGFIDELGWE--A--LLNTRGTTWRKLDET 68 (118)
T ss_pred HHHHHcCCC-cEEeehccCCcCHHHHHHHHHHcCHH--H--HHhcCCchHHhCCHh
Confidence 334555777 666653 2678999999988754 1 334455666665543
No 377
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=25.10 E-value=2.9e+02 Score=20.50 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=27.4
Q ss_pred eEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEE--eCCcEEEEEEcc
Q psy5399 94 IRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV--DDGKITQLNIEP 141 (156)
Q Consensus 94 f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~ii--d~G~I~~~~~~~ 141 (156)
=+++.|..+.+.++||+.. .|+ +|- -+|+...+...+
T Consensus 165 ~~vYfdQ~G~Lt~rF~I~~----------VPA-vV~~~q~G~~l~I~E~~ 203 (209)
T PRK13738 165 SRIYFDQNGVLCQRFGIDQ----------VPA-RVSAVPGGRFLKVEFIP 203 (209)
T ss_pred CceEEcCcchHHHhcCCee----------ece-EEEEcCCCCEEEEEEEC
Confidence 7789999999999999964 333 555 588877775443
No 378
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=25.10 E-value=1.7e+02 Score=22.67 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=32.9
Q ss_pred ChhhHHHhHHHHHHcCCCEEEEEecCC---HHHHHHHHHHcCCC
Q psy5399 51 HLPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAE 91 (156)
Q Consensus 51 ~l~~l~~~~~~~~~~~~~~v~~is~d~---~~~~~~~~~~~~~~ 91 (156)
.+|...++++.+.+.|+. |+.||.=+ .+...+++.+.|++
T Consensus 146 Alp~al~ly~~l~~~G~k-If~VSgR~e~~r~aT~~NL~kaGy~ 188 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFK-IIFLSGRLKDKQAVTEANLKKAGYH 188 (275)
T ss_pred CChHHHHHHHHHHHCCCE-EEEEeCCchhHHHHHHHHHHHcCCC
Confidence 589999999999999999 99998633 35567888888886
No 379
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=24.86 E-value=1.8e+02 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=33.8
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
-|...+..+++++.|+. +.-+|.|.....++.+++.+++
T Consensus 407 ~~~a~e~i~~Lk~~Gi~-v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 407 RPEAKEVIQALKRRGIE-PVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred cHHHHHHHHHHHHcCCe-EEEEcCCCHHHHHHHHHHcCCc
Confidence 36777888889999998 8888999999999999999885
No 380
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.84 E-value=59 Score=24.41 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=32.0
Q ss_pred eEEEecCCchhHHhhCCeeeccCCCcceeeeEEEEEe-CCcEE-EEEEccCCCceeecchhhh
Q psy5399 94 IRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKIT-QLNIEPDGTGLTCSLVDEL 154 (156)
Q Consensus 94 f~~~~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~iid-~G~I~-~~~~~~~~~~~~~~~~~~~ 154 (156)
.|+..|.++.|++-|-... |.. + +=|.. +|+++ .+..++.+.+.+...+..+
T Consensus 93 mPl~~d~dG~F~RPyaFg~-----GSN-s---VeV~sadG~~rqRvQFY~~~~g~~~arlRvv 146 (268)
T COG4676 93 MPLRIDSDGSFARPYAFGE-----GSN-S---VEVRSADGQSRQRVQFYETNAGKTRARLRVV 146 (268)
T ss_pred cceeecCCCceecceeccC-----CCC-c---eEEECCCcchhheEEEEecCCCccCceEEEE
Confidence 8999999999998875532 211 1 44555 88888 5554444455554444433
No 381
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=24.75 E-value=81 Score=18.36 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=15.9
Q ss_pred EEEEeCCcEEEEEEccCC
Q psy5399 126 SMVVDDGKITQLNIEPDG 143 (156)
Q Consensus 126 ~~iid~G~I~~~~~~~~~ 143 (156)
.||+|.|.-+|+|++...
T Consensus 20 ~yIld~~~~i~vW~G~~~ 37 (76)
T PF00626_consen 20 CYILDCGYEIFVWVGKKS 37 (76)
T ss_dssp EEEEEESSEEEEEEHTTS
T ss_pred EEEEEeCCCcEEEEeccC
Confidence 799999999999998774
No 382
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=24.56 E-value=2.5e+02 Score=19.98 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=24.9
Q ss_pred hhHHHhHHHHHHcCCCEEEEEec-CCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAV-NDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~-d~~~~~~~~~~~~~~~ 91 (156)
|......+++++.|+. +...|. +.|+..++.++.+++.
T Consensus 48 pdv~~iL~~L~~~gv~-lavASRt~~P~~A~~~L~~l~i~ 86 (169)
T PF12689_consen 48 PDVPEILQELKERGVK-LAVASRTDEPDWARELLKLLEID 86 (169)
T ss_dssp TTHHHHHHHHHHCT---EEEEE--S-HHHHHHHHHHTT-C
T ss_pred cCHHHHHHHHHHCCCE-EEEEECCCChHHHHHHHHhcCCC
Confidence 4555666677778998 766664 6788999999998887
No 383
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=24.53 E-value=52 Score=23.24 Aligned_cols=24 Identities=33% Similarity=0.783 Sum_probs=18.3
Q ss_pred eCCCCCCCCcCChhhHHHhHHHHHHc
Q psy5399 40 PGAFTPGCSVTHLPGYLAKEKDLKAK 65 (156)
Q Consensus 40 ~~~~cp~C~~~~l~~l~~~~~~~~~~ 65 (156)
|-.+||.|. +. +.+..+.+.+.+.
T Consensus 3 ~~~~c~gc~-~~-~~~~~l~~~l~~~ 26 (178)
T cd02008 3 PPGLCPGCP-HR-PSFYALRKAFKKD 26 (178)
T ss_pred CCCcCCCCC-Ch-HHHHHHHHHhcCC
Confidence 346899999 44 8888888888643
No 384
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.50 E-value=1.2e+02 Score=16.06 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=11.7
Q ss_pred EEEEeCCcEEEEEEc
Q psy5399 126 SMVVDDGKITQLNIE 140 (156)
Q Consensus 126 ~~iid~G~I~~~~~~ 140 (156)
++++-||+|+.+.-.
T Consensus 19 ~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 19 TIIIQDGRVVQIEKT 33 (38)
T ss_pred EEEEECCEEEEEEhh
Confidence 567779999998653
No 385
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=24.46 E-value=3e+02 Score=20.52 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=44.5
Q ss_pred hhHH-HhHHHHHHcCCCEEEEEecCCHH-----HHHHHHHHcCCCcceE-EEecCC-------chhHHhhCCeeeccCCC
Q psy5399 53 PGYL-AKEKDLKAKGIHEIFCIAVNDAF-----VMEAWCRKNNAEGKIR-FLADPN-------LEFTKKLGVEHEIPVLG 118 (156)
Q Consensus 53 ~~l~-~~~~~~~~~~~~~v~~is~d~~~-----~~~~~~~~~~~~~~f~-~~~D~~-------~~~~~~~gv~~~~~~~~ 118 (156)
|.+. .+.+..++.|+. .+.+...++. .+++.+++++...-|| ..++-+ ..|.+.||-
T Consensus 62 PDl~~~l~~~~~e~g~k-avIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~i~~F~~~fGk-------- 132 (217)
T PF02593_consen 62 PDLTYELPEIAKEAGVK-AVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQIDEFAEYFGK-------- 132 (217)
T ss_pred chhHHHHHHHHHHcCCC-EEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChhHHHHHHHhCC--------
Confidence 6665 566666667888 6666655555 8888888887542133 222222 355555554
Q ss_pred cceeeeEEEEEeCCcEEEEEE
Q psy5399 119 GWRSKRYSMVVDDGKITQLNI 139 (156)
Q Consensus 119 ~~~~~~~~~iid~G~I~~~~~ 139 (156)
|-. -+.+++|+|..+.+
T Consensus 133 -P~~---ei~v~~~~I~~V~V 149 (217)
T PF02593_consen 133 -PKV---EIEVENGKIKDVKV 149 (217)
T ss_pred -ceE---EEEecCCcEEEEEE
Confidence 222 34457999988865
No 386
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=24.39 E-value=2.5e+02 Score=22.27 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=32.4
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCH-----------HHHHHHHHHcCCCcceEEEecCCchh
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDA-----------FVMEAWCRKNNAEGKIRFLADPNLEF 104 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~-----------~~~~~~~~~~~~~~~f~~~~D~~~~~ 104 (156)
...+.+..+++++.|.. |+.|..-++ .+..+.+.+.|+ .|+++|++..+
T Consensus 250 r~~~l~~L~~~~~~G~~-Vl~IDY~~~~~~~~~n~~~~~~~~~~~~~~Gf---~pYVsd~~l~l 309 (315)
T TIGR01370 250 RQRRLLALYRLWQQGKF-VLTVDYVDDGTKTNENPARMKDAAEKARAAGL---IPYVAESDLEL 309 (315)
T ss_pred HHHHHHHHHHHHHCCCc-EEEEEecCCcccchhhHHHHHHHHHHHHHcCC---eeeecCchhcc
Confidence 34455556667788999 999964332 334566777776 68999876443
No 387
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=24.38 E-value=2.7e+02 Score=19.93 Aligned_cols=47 Identities=15% Similarity=0.116 Sum_probs=33.7
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
+...+..++++++|+. ++.+|.-+...++.+.+..++.. .++++...
T Consensus 19 ~~~~~~l~~l~~~gi~-~~i~TgR~~~~~~~~~~~l~~~~-~~~I~~NG 65 (221)
T TIGR02463 19 QPAAPWLTRLQEAGIP-VILCTSKTAAEVEYLQKALGLTG-DPYIAENG 65 (221)
T ss_pred HHHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCCC-CcEEEeCC
Confidence 3345666777888998 88888888888888888888652 34554433
No 388
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.06 E-value=2.1e+02 Score=23.60 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=31.9
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..|..+.+++++.|.. ++....+..+.+.+++++++..
T Consensus 78 esL~~L~~~L~~~g~~-L~v~~g~~~~~l~~l~~~~~i~ 115 (454)
T TIGR00591 78 GGLDEVANECERLIIP-FHLLDGPPKELLPYFVDLHAAA 115 (454)
T ss_pred HHHHHHHHHHHHcCCc-eEEeecChHHHHHHHHHHcCCC
Confidence 4677788888889999 8888888888999999988875
No 389
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=23.96 E-value=2e+02 Score=21.06 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=31.3
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...++.+.++++|+. +..+|....+.++...+..++.
T Consensus 95 ~~g~~e~L~~Lk~~g~~-~~i~Tn~~~~~~~~~l~~~~l~ 133 (224)
T PRK14988 95 REDTVPFLEALKASGKR-RILLTNAHPHNLAVKLEHTGLD 133 (224)
T ss_pred CCCHHHHHHHHHhCCCe-EEEEeCcCHHHHHHHHHHCCcH
Confidence 57888889999999988 8778877777777777777763
No 390
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.92 E-value=82 Score=21.79 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=36.5
Q ss_pred eeehhhHhCCCeEEEEEee-C-CCCCCCCcCChh--------hHHHhHHHHHHc--CCCEEEEEecCC--H---HHHHHH
Q psy5399 22 KIQIADAIKGKKVIIFGVP-G-AFTPGCSVTHLP--------GYLAKEKDLKAK--GIHEIFCIAVND--A---FVMEAW 84 (156)
Q Consensus 22 ~~~l~~~~~gk~vvl~f~~-~-~~cp~C~~~~l~--------~l~~~~~~~~~~--~~~~v~~is~d~--~---~~~~~~ 84 (156)
-+++.| +.++.-++.|+. + .-|++|...+.. .+.++.+...+. .+. -+.+|... . .++-+.
T Consensus 6 ~~~~~d-~p~~~~~~vfl~GCnlrC~~C~n~~~~~~~~g~~lt~eel~~~I~~~~~~~~-gVt~SGGEl~~~~l~~ll~~ 83 (147)
T TIGR02826 6 IIVFQE-VPNEYSLAFYITGCPLGCKGCHSPESWHLSEGTKLTPEYLTKTLDKYRSLIS-CVLFLGGEWNREALLSLLKI 83 (147)
T ss_pred eEEEee-cCCCEEEEEEeCCCCCCCCCCCChHHcCCCCCcCCCHHHHHHHHHHhCCCCC-EEEEechhcCHHHHHHHHHH
Confidence 346677 678876666663 2 239999643221 122344444332 344 57777653 1 223334
Q ss_pred HHHcCCCcceEEEe
Q psy5399 85 CRKNNAEGKIRFLA 98 (156)
Q Consensus 85 ~~~~~~~~~f~~~~ 98 (156)
+++.+++ .-+.+
T Consensus 84 lk~~Gl~--i~l~T 95 (147)
T TIGR02826 84 FKEKGLK--TCLYT 95 (147)
T ss_pred HHHCCCC--EEEEC
Confidence 4555555 44443
No 391
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=23.84 E-value=1.9e+02 Score=24.41 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=34.7
Q ss_pred hhhHHHhHHHHHHcCC-CEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGI-HEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~-~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...+..+++++.|+ . +..+|.|+....++.+++.++.
T Consensus 364 ~~~~~e~i~~L~~~Gi~~-v~vvTgd~~~~a~~i~~~lgi~ 403 (536)
T TIGR01512 364 RPDAAEAIAELKALGIEK-VVMLTGDRRAVAERVARELGID 403 (536)
T ss_pred hHHHHHHHHHHHHcCCCc-EEEEcCCCHHHHHHHHHHcCCh
Confidence 4788888899999999 8 9999999999999999999985
No 392
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=23.79 E-value=3e+02 Score=21.36 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=23.6
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 90 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 90 (156)
.|.+.++.+.+++.|+. +..+|.......+..++..++
T Consensus 123 ~pG~~efl~~L~~~GIp-v~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 123 KDGYENFFDKLQQHSIP-VFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred CcCHHHHHHHHHHCCCc-EEEEeCCcHHHHHHHHHHcCC
Confidence 35555666666666666 666666666666666665555
No 393
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=23.73 E-value=2.7e+02 Score=20.79 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=31.5
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEec
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
+.-.+..++++++|+. |+..|.-+....+.+.++.++. .++++.
T Consensus 22 ~~~~~ai~~l~~~G~~-~~iaTGR~~~~~~~~~~~l~~~--~~~I~~ 65 (272)
T PRK15126 22 EKTLSTLARLRERDIT-LTFATGRHVLEMQHILGALSLD--AYLITG 65 (272)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHHcCCC--CcEEec
Confidence 4555667778888987 7766666777788888888876 454443
No 394
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=23.49 E-value=2.6e+02 Score=21.98 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=28.1
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
++..+..+..+++|+. +++|+.+. .+.+++++++..
T Consensus 92 ~e~~~a~~~a~~~ga~-vIaIT~~~--~L~~~a~~~~~~ 127 (337)
T PRK08674 92 EETLSAVEQALKRGAK-IIAITSGG--KLKEMAKEHGLP 127 (337)
T ss_pred HHHHHHHHHHHHCCCe-EEEECCCc--hHHHHHHhcCCe
Confidence 6777788888888998 99999655 388888887654
No 395
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=23.43 E-value=2.1e+02 Score=23.78 Aligned_cols=39 Identities=5% Similarity=0.128 Sum_probs=31.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+..|.++.+++++.|+. ++....+..+.+.+++++++..
T Consensus 54 ~esL~~L~~~L~~~G~~-L~v~~G~p~~vl~~l~~~~~~~ 92 (471)
T TIGR03556 54 IGCLQELQQRYQQAGSQ-LLILQGDPVQLIPQLAQQLGAK 92 (471)
T ss_pred HHHHHHHHHHHHHCCCC-eEEEECCHHHHHHHHHHHcCCC
Confidence 35677788889999999 8877777778888888887765
No 396
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=23.39 E-value=2.2e+02 Score=18.58 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHHHcCCCEEEEEecCCH----HHHHHHHHHcCCCcceEEEecCCchhHHhhCCe
Q psy5399 61 DLKAKGIHEIFCIAVNDA----FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111 (156)
Q Consensus 61 ~~~~~~~~~v~~is~d~~----~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~ 111 (156)
.++...+. .+.|+.|.+ +....+++.++.+ +-.+.....+++++.|..
T Consensus 36 alk~gkak-lViiA~D~~~~~kkki~~~~~~~~Vp--v~~~~~t~~eLG~A~Gk~ 87 (108)
T PTZ00106 36 ALRNGKAK-LVIISNNCPPIRRSEIEYYAMLSKTG--VHHYAGNNNDLGTACGRH 87 (108)
T ss_pred HHHcCCee-EEEEeCCCCHHHHHHHHHHHhhcCCC--EEEeCCCHHHHHHHhCCc
Confidence 33444555 777887743 3445566666665 544445567888888864
No 397
>TIGR03831 YgiT_finger YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.
Probab=23.35 E-value=56 Score=17.12 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=15.3
Q ss_pred hCCCeEEEEEeeCCCCCCCC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCS 48 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~ 48 (156)
++|+-++|--.|+-.|+.|-
T Consensus 20 ~~~~~~~i~~vp~~~C~~CG 39 (46)
T TIGR03831 20 YGGELIVIENVPALVCPQCG 39 (46)
T ss_pred eCCEEEEEeCCCccccccCC
Confidence 46666666677888899998
No 398
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=23.32 E-value=2.1e+02 Score=18.30 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=27.6
Q ss_pred cCCCceeehhhHhCC--CeEEEEEeeCCCCCCCCcCChhhHHH-hHHHHHH
Q psy5399 17 NTPQTKIQIADAIKG--KKVIIFGVPGAFTPGCSVTHLPGYLA-KEKDLKA 64 (156)
Q Consensus 17 ~~~g~~~~l~~~~~g--k~vvl~f~~~~~cp~C~~~~l~~l~~-~~~~~~~ 64 (156)
..||+.+.+-+ ++. ..|.|.| .|+ |-.|... .-.++. ..+.+++
T Consensus 27 ~~dGGdve~~~-i~~~~g~V~l~l-~Ga-C~gC~sS-~~TLk~gIE~~L~~ 73 (93)
T COG0694 27 AMDGGDVELVG-IDEEDGVVYLRL-GGA-CSGCPSS-TVTLKNGIERQLKE 73 (93)
T ss_pred eccCCeEEEEE-EecCCCeEEEEe-CCc-CCCCccc-HHHHHHHHHHHHHH
Confidence 36899999998 563 3355555 354 9999954 455555 3444443
No 399
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=23.24 E-value=2.7e+02 Score=21.05 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=31.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|...+..+.+++.|+. +..+|..+...++...++.++..-|.
T Consensus 103 ~~g~~e~L~~Lk~~g~~-l~ivTn~~~~~~~~~l~~~~i~~~f~ 145 (272)
T PRK13223 103 YPGVRDTLKWLKKQGVE-MALITNKPERFVAPLLDQMKIGRYFR 145 (272)
T ss_pred CCCHHHHHHHHHHCCCe-EEEEECCcHHHHHHHHHHcCcHhhCe
Confidence 47778888888888888 77777777766777777777643244
No 400
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=23.05 E-value=1e+02 Score=18.66 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=10.3
Q ss_pred EEEEe-CCcEEEEE
Q psy5399 126 SMVVD-DGKITQLN 138 (156)
Q Consensus 126 ~~iid-~G~I~~~~ 138 (156)
.+++| +|+|++..
T Consensus 8 i~v~D~~~~i~~~N 21 (110)
T PF08448_consen 8 IFVIDPDGRIVYAN 21 (110)
T ss_dssp EEEEETTSBEEEE-
T ss_pred eEEECCCCEEEEEH
Confidence 57778 99999985
No 401
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=22.90 E-value=2.2e+02 Score=21.49 Aligned_cols=43 Identities=21% Similarity=0.129 Sum_probs=32.5
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceE
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~ 95 (156)
.|...++.+++++.|+. +..+|..+...++...+.+++..-|.
T Consensus 111 ~pg~~e~L~~L~~~g~~-l~I~Tn~~~~~~~~~l~~~gl~~~Fd 153 (260)
T PLN03243 111 RPGSREFVQALKKHEIP-IAVASTRPRRYLERAIEAVGMEGFFS 153 (260)
T ss_pred CCCHHHHHHHHHHCCCE-EEEEeCcCHHHHHHHHHHcCCHhhCc
Confidence 46777788888888888 77777777888888888888753243
No 402
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.49 E-value=3.6e+02 Score=22.80 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=37.2
Q ss_pred HHHhHHHHHHcCCCEEEEEec-------CCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 55 YLAKEKDLKAKGIHEIFCIAV-------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 55 l~~~~~~~~~~~~~~v~~is~-------d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
|....+...+.++.+|.+|.. |..+-+++-.++.|++ +.+++..+..-...+|+..
T Consensus 61 L~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~--ievIsGeeEArl~~lGv~~ 123 (492)
T COG0248 61 LKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLP--IEVISGEEEARLIYLGVAS 123 (492)
T ss_pred HHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCc--eEEeccHHHHHHHHHHHHh
Confidence 333444445556776777744 4567777778888998 9999987755555566653
No 403
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=22.45 E-value=2.9e+02 Score=19.50 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCCceeehhhHhCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC---HHHHHHHHHHc-----C
Q psy5399 18 TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKN-----N 89 (156)
Q Consensus 18 ~~g~~~~l~~~~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~---~~~~~~~~~~~-----~ 89 (156)
.|| +++.|| ..|.. +... +.. . .+ +...+++..+.+.|.. ++-+|.=+ ....+.|+.++ +
T Consensus 6 IDG-TiT~SD-~~G~i--~~~~-G~d----~-~h-~g~~~l~~~i~~~GY~-ilYlTaRp~~qa~~Tr~~L~~~~q~~~~ 73 (157)
T PF08235_consen 6 IDG-TITKSD-VLGHI--LPIL-GKD----W-TH-PGAAELYRKIADNGYK-ILYLTARPIGQANRTRSWLAQHQQQGHN 73 (157)
T ss_pred ccC-CcCccc-hhhhh--hhcc-Cch----h-hh-hcHHHHHHHHHHCCeE-EEEECcCcHHHHHHHHHHHHHHHhCCcc
Confidence 444 577788 45652 2222 322 2 24 7788899999999998 98887643 46677888888 6
Q ss_pred CCcceEEEecCCc
Q psy5399 90 AEGKIRFLADPNL 102 (156)
Q Consensus 90 ~~~~f~~~~D~~~ 102 (156)
++. -|++..|++
T Consensus 74 lP~-Gpv~~sP~~ 85 (157)
T PF08235_consen 74 LPD-GPVLLSPDS 85 (157)
T ss_pred CCC-CCEEECCcc
Confidence 664 566666543
No 404
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=22.15 E-value=1.9e+02 Score=26.36 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=32.3
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
++..+..+++++.|+. ++-|+.|.+...++.+++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~-v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 553 ESAAPAIAALRENGVA-VKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHHHCCCe-EEEECCCCHHHHHHHHHHcCCC
Confidence 4556677888889998 9999999999999999999985
No 405
>KOG1503|consensus
Probab=22.14 E-value=2.1e+02 Score=21.97 Aligned_cols=56 Identities=9% Similarity=0.071 Sum_probs=41.7
Q ss_pred CCCCCCcCChhhHHHhHHH-HHH-cCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 43 FTPGCSVTHLPGYLAKEKD-LKA-KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 43 ~cp~C~~~~l~~l~~~~~~-~~~-~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
.||.-...+.|.|.+..++ .++ ++.. +++=|++...+.+.|+++..+. ..++..+.
T Consensus 143 ~~pvdnlraspfllqyiqe~ipdyrnav-ivaksp~~akka~syaerlrlg--lavihge~ 200 (354)
T KOG1503|consen 143 SIPVDNLRASPFLLQYIQEEIPDYRNAV-IVAKSPGVAKKAQSYAERLRLG--LAVIHGEQ 200 (354)
T ss_pred cccccccccCHHHHHHHHHhCccccceE-EEecCcchhhHHHhHHHHHhhc--eeEeeccc
Confidence 4888877777877765543 332 3555 7788888889999999999988 88887654
No 406
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=22.14 E-value=1.9e+02 Score=26.26 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=33.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
++..+..+++++.|+. ++-|+.|.+...++.+++.|+.
T Consensus 518 ~~~~~aI~~l~~aGI~-vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 518 ESTKEAIAALFKNGIN-VKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCCC
Confidence 4566777888899999 9999999999999999999985
No 407
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=22.07 E-value=1.9e+02 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=32.9
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|+..+..+++++.|+. ++-|+.|.+...++.+++.|+.
T Consensus 553 ~~a~~aI~~l~~aGI~-v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 553 ETTAPALKALKASGVT-VKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCCC
Confidence 4556677888889999 9999999999999999999985
No 408
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=22.01 E-value=2.6e+02 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=11.8
Q ss_pred hCCCeEEEEEeeCC-CCCCCCc
Q psy5399 29 IKGKKVIIFGVPGA-FTPGCSV 49 (156)
Q Consensus 29 ~~gk~vvl~f~~~~-~cp~C~~ 49 (156)
-.|...+|++..++ -|++|..
T Consensus 14 GpG~r~~if~~GCnl~C~~C~n 35 (154)
T PRK11121 14 GPGTRCTLFVSGCVHQCPGCYN 35 (154)
T ss_pred CCCcEEEEEcCCCCCcCcCCCC
Confidence 34555556554332 2899953
No 409
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=21.85 E-value=1.1e+02 Score=20.55 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.3
Q ss_pred hHHhhCCe
Q psy5399 104 FTKKLGVE 111 (156)
Q Consensus 104 ~~~~~gv~ 111 (156)
+.+.||+.
T Consensus 71 ~~~~fgl~ 78 (130)
T cd02983 71 LEEALNIG 78 (130)
T ss_pred HHHHcCCC
Confidence 55555553
No 410
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=21.75 E-value=2.9e+02 Score=19.65 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=33.6
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEec
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
+...+..+++.++|+. ++..|.-+......+..+.++. .++++.
T Consensus 18 ~~~~~al~~l~~~g~~-~~i~TGR~~~~~~~~~~~~~~~--~~~I~~ 61 (254)
T PF08282_consen 18 PETIEALKELQEKGIK-LVIATGRSYSSIKRLLKELGID--DYFICS 61 (254)
T ss_dssp HHHHHHHHHHHHTTCE-EEEECSSTHHHHHHHHHHTTHC--SEEEEG
T ss_pred HHHHHHHHhhcccceE-EEEEccCcccccccccccccch--hhhccc
Confidence 5666677778888987 7777777888899999988877 565554
No 411
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=21.74 E-value=2.7e+02 Score=20.56 Aligned_cols=44 Identities=7% Similarity=0.138 Sum_probs=29.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCCcceEEEec
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 99 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~f~~~~D 99 (156)
+.-.+..++++++|+. |+..|.-.......+.++.++. .++++.
T Consensus 23 ~~~~~ai~~~~~~G~~-~~iaTGR~~~~~~~~~~~l~~~--~~~I~~ 66 (272)
T PRK10530 23 PESLEALARAREAGYK-VIIVTGRHHVAIHPFYQALALD--TPAICC 66 (272)
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCCChHHHHHHHHhcCCC--CCEEEc
Confidence 4445666777888887 6666666667777788888776 444443
No 412
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=21.73 E-value=1.3e+02 Score=22.58 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=28.0
Q ss_pred EEEecCCHHHHHHHHHHcCCCcceEEEecCCchhHHhhCCee
Q psy5399 71 FCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 112 (156)
Q Consensus 71 ~~is~d~~~~~~~~~~~~~~~~~f~~~~D~~~~~~~~~gv~~ 112 (156)
+.+|.|+.+.+++|.+.++.. ...+|+.+|+..
T Consensus 22 IvlS~~pge~lrKWR~~F~vS---------Q~elA~~l~vSp 54 (241)
T COG1709 22 IVLSEDPGETLRKWREIFNVS---------QTELARELGVSP 54 (241)
T ss_pred eEecCChhHHHHHHHHHhCcc---------HHHHHHHhCCCc
Confidence 668999999999999999886 568899998863
No 413
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=21.54 E-value=1.7e+02 Score=21.56 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=29.2
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.|...++.+.++++|+. +..+|..+.+.++...++.++.
T Consensus 101 ~pg~~e~L~~L~~~g~~-l~IvT~~~~~~~~~~l~~~gl~ 139 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIK-IGSTTGYTREMMDVVAPEAALQ 139 (253)
T ss_pred CCCHHHHHHHHHHCCCe-EEEECCCcHHHHHHHHHHHHhc
Confidence 46667777888888888 7777777777777777777654
No 414
>PF10453 NUFIP1: Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1); InterPro: IPR019496 Nuclear fragile X mental retardation-interacting protein 1 (Nufip1) has been implicated in the assembly of the large subunit of the ribosome [] and in telomere maintenance []. It is known to bind RNA [] and is phosphorylated upon DNA damage []. This entry represents a conserved domain found within Nufip1. Some proteins containing this region also contain a CCCH zinc finger.
Probab=21.52 E-value=71 Score=18.41 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=18.2
Q ss_pred EecCCHHHHHHHHHHcCCCcceEEE
Q psy5399 73 IAVNDAFVMEAWCRKNNAEGKIRFL 97 (156)
Q Consensus 73 is~d~~~~~~~~~~~~~~~~~f~~~ 97 (156)
++.++++.+++|.++..-. ||.-
T Consensus 15 ~~L~t~eeI~~W~eERrk~--~PT~ 37 (56)
T PF10453_consen 15 IKLQTPEEIAKWIEERRKN--YPTK 37 (56)
T ss_pred eecCCHHHHHHHHHHHHHc--CCcH
Confidence 4557999999999998776 7754
No 415
>TIGR00035 asp_race aspartate racemase.
Probab=21.50 E-value=2.7e+02 Score=20.51 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=29.1
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecCCHHH-HHHHHHHcCCCcceEEEe
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFV-MEAWCRKNNAEGKIRFLA 98 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d~~~~-~~~~~~~~~~~~~f~~~~ 98 (156)
.+.+.+..+.+.+.|++ ++.|..++.-. ..+..+.. + .|+++
T Consensus 61 ~~~l~~~~~~L~~~g~d-~iviaCNTah~~~~~l~~~~--~--iPii~ 103 (229)
T TIGR00035 61 RPILIDIAVKLENAGAD-FIIMPCNTAHKFAEDIQKAI--G--IPLIS 103 (229)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCccHHHHHHHHHHhC--C--CCEec
Confidence 46777888888889999 99999987654 33333333 4 55555
No 416
>PF07788 DUF1626: Protein of unknown function (DUF1626); InterPro: IPR012431 This is a family consisting of sequences from hypothetical proteins of unknown function expressed by certain species of archaea. One member (Q9YCN7 from SWISSPROT) is thought to be similar to tropomyosin [].
Probab=21.49 E-value=2e+02 Score=17.37 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=34.1
Q ss_pred CCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCC
Q psy5399 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 90 (156)
Q Consensus 30 ~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~ 90 (156)
++..++|.-.-++--..-. ..+..-.++|++...+.+..++.|++.=.+...+.+++.|+
T Consensus 10 kdg~~ilvEikSs~~~~Dv-~~f~rk~~lYek~~grk~~r~ivVtp~id~~a~~~A~~LGI 69 (70)
T PF07788_consen 10 KDGKVILVEIKSSVSRGDV-YIFKRKAELYEKVHGRKVDRLIVVTPYIDDRAKEMAEELGI 69 (70)
T ss_pred ECCeEEEEEEEccCCHHHH-HHHHHHHHHHHHHHCCCcceEEEEEeecCHHHHHHHHHhCC
Confidence 4444566555444333333 22444456777777666556777887543446677777765
No 417
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=21.49 E-value=1.1e+02 Score=17.64 Aligned_cols=16 Identities=31% Similarity=0.661 Sum_probs=12.9
Q ss_pred EEEEe-CCcEEEEEEcc
Q psy5399 126 SMVVD-DGKITQLNIEP 141 (156)
Q Consensus 126 ~~iid-~G~I~~~~~~~ 141 (156)
.|.|+ +|+|..+.+..
T Consensus 15 ~~~i~~~G~v~~~~i~~ 31 (74)
T TIGR01352 15 RFTVDADGRVTSVSVLK 31 (74)
T ss_pred EEEECCCCCEEEEEEEE
Confidence 68888 99999987643
No 418
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=21.36 E-value=2.1e+02 Score=25.38 Aligned_cols=38 Identities=16% Similarity=0.094 Sum_probs=32.2
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
|...+..+++++.|+. ++-+|.|.....++++++.|+.
T Consensus 571 ~~a~~~i~~L~~~gi~-~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 571 ADARQAISELKALGIK-GVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred hhHHHHHHHHHHCCCE-EEEEcCCCHHHHHHHHHHcCCC
Confidence 6677777888888888 8888999999999999999886
No 419
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=21.31 E-value=2.5e+02 Score=18.45 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=27.3
Q ss_pred hhhHHHhHHHHHHcCCCEEEEEecC-CHHHHHHHHHHcC
Q psy5399 52 LPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNN 89 (156)
Q Consensus 52 l~~l~~~~~~~~~~~~~~v~~is~d-~~~~~~~~~~~~~ 89 (156)
.+...++.+.+++.|+. +..+|.. .+.......+..+
T Consensus 31 ~~gv~e~L~~Lk~~g~~-l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFL-LALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHCCeE-EEEEeCCCCHHHHHHHHHhcc
Confidence 47888888999989988 7777777 5665656556555
No 420
>KOG0780|consensus
Probab=21.19 E-value=4.9e+02 Score=21.72 Aligned_cols=57 Identities=19% Similarity=0.161 Sum_probs=33.4
Q ss_pred hCCCeEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHcCCCEEEEEecCC-----HHHHHHHHHHcCCC
Q psy5399 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVND-----AFVMEAWCRKNNAE 91 (156)
Q Consensus 29 ~~gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~~~~~v~~is~d~-----~~~~~~~~~~~~~~ 91 (156)
-++++-||.|. |.---. . . -...+++--|+.+|.. +.-|+.|+ -+.+++++.+-+.+
T Consensus 97 ~K~kpsVimfV-GLqG~G-K--T-Ttc~KlA~y~kkkG~K-~~LvcaDTFRagAfDQLkqnA~k~~iP 158 (483)
T KOG0780|consen 97 KKGKPSVIMFV-GLQGSG-K--T-TTCTKLAYYYKKKGYK-VALVCADTFRAGAFDQLKQNATKARVP 158 (483)
T ss_pred ccCCCcEEEEE-eccCCC-c--c-eeHHHHHHHHHhcCCc-eeEEeecccccchHHHHHHHhHhhCCe
Confidence 46788888876 321111 1 1 2334555555677887 76676664 35566677777766
No 421
>KOG4614|consensus
Probab=20.85 E-value=1e+02 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.2
Q ss_pred eEEEEEe-CCcEEEEEEccC
Q psy5399 124 RYSMVVD-DGKITQLNIEPD 142 (156)
Q Consensus 124 ~~~~iid-~G~I~~~~~~~~ 142 (156)
=+++++| .|+|++.--++.
T Consensus 249 GyV~L~D~s~kIRW~g~G~a 268 (287)
T KOG4614|consen 249 GYVLLLDKSGKIRWQGFGTA 268 (287)
T ss_pred EEEEEEccCceEEEeecCCC
Confidence 3578888 999999987654
No 422
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=20.83 E-value=1.1e+02 Score=20.79 Aligned_cols=30 Identities=10% Similarity=0.194 Sum_probs=17.6
Q ss_pred EEEEecC-CHHHHHHHHHHcCCCcceEEEecCC
Q psy5399 70 IFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPN 101 (156)
Q Consensus 70 v~~is~d-~~~~~~~~~~~~~~~~~f~~~~D~~ 101 (156)
|++++.. +.+.+.+.++++... +-++.|++
T Consensus 27 v~~Lsa~~n~~~L~~q~~~f~p~--~v~i~~~~ 57 (129)
T PF02670_consen 27 VVALSAGSNIEKLAEQAREFKPK--YVVIADEE 57 (129)
T ss_dssp EEEEEESSTHHHHHHHHHHHT-S--EEEESSHH
T ss_pred EEEEEcCCCHHHHHHHHHHhCCC--EEEEcCHH
Confidence 6666543 456666666666665 66666653
No 423
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=20.72 E-value=1.1e+02 Score=20.62 Aligned_cols=57 Identities=16% Similarity=0.158 Sum_probs=30.5
Q ss_pred EEeeCCCCC--CC---CcCChhhHHHhHHHHHHcCCCEEEEEecC--C-----HHHHHHHHHHcCCCcceE
Q psy5399 37 FGVPGAFTP--GC---SVTHLPGYLAKEKDLKAKGIHEIFCIAVN--D-----AFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 37 ~f~~~~~cp--~C---~~~~l~~l~~~~~~~~~~~~~~v~~is~d--~-----~~~~~~~~~~~~~~~~f~ 95 (156)
+|=|+-+|. .| ...+|-++....+.++++|+. |.=.+.. + -+..++++++.|... +|
T Consensus 6 ifepamCC~tGvCG~~vd~eL~~~a~~~~~Lk~~gv~-v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~-LP 74 (123)
T PF06953_consen 6 IFEPAMCCSTGVCGPSVDPELVRFAADLDWLKEQGVE-VERYNLAQNPQAFVENPEVNQLLQTEGAEA-LP 74 (123)
T ss_dssp EEE-S-SSTTS-SSSS--HHHHHHHHHHHHHHHTT-E-EEEEETTT-TTHHHHSHHHHHHHHHH-GGG--S
T ss_pred EeccccccccCccCCCCCHHHHHHHHHHHHHHhCCce-EEEEccccCHHHHHhCHHHHHHHHHcCccc-CC
Confidence 344665553 33 334577777888888999988 6544432 2 144567777777544 44
No 424
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=20.71 E-value=1.8e+02 Score=23.81 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=14.7
Q ss_pred HHhHHHHHHcCCCEEEEEecCCHH
Q psy5399 56 LAKEKDLKAKGIHEIFCIAVNDAF 79 (156)
Q Consensus 56 ~~~~~~~~~~~~~~v~~is~d~~~ 79 (156)
..+.+..++.|.. |..||.+..+
T Consensus 366 e~L~e~a~~~Ga~-V~iiS~~~ee 388 (409)
T TIGR00108 366 EWLSELAENFGAK-LEFISTESEE 388 (409)
T ss_pred HHHHHHHHHcCCE-EEEECCCChh
Confidence 4456666666777 7777766554
No 425
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=20.63 E-value=2.3e+02 Score=19.37 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=18.1
Q ss_pred hHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 58 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 58 ~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
..++++++|+. +..+|.......++.++.+++.
T Consensus 36 ~i~~Lk~~G~~-i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGIE-VAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCCE-EEEEECCCCHHHHHHHHHcCCC
Confidence 34455555665 5555555555555556665554
No 426
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=20.61 E-value=36 Score=23.64 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=12.3
Q ss_pred EeeCCCCCCCCcCChhhHH
Q psy5399 38 GVPGAFTPGCSVTHLPGYL 56 (156)
Q Consensus 38 f~~~~~cp~C~~~~l~~l~ 56 (156)
|=+-.-||.|+ +.+|.|.
T Consensus 6 FGpei~CPhCR-Q~ipALt 23 (163)
T TIGR02652 6 FGPEIRCPHCR-QNIPALT 23 (163)
T ss_pred cCCcCcCchhh-cccchhe
Confidence 33455699999 5677763
No 427
>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=2e+02 Score=23.76 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHcCCCcceEEEecC
Q psy5399 77 DAFVMEAWCRKNNAEGKIRFLADP 100 (156)
Q Consensus 77 ~~~~~~~~~~~~~~~~~f~~~~D~ 100 (156)
..+.+.+.+++.|.+ ..+++|.
T Consensus 366 ~vd~l~e~a~~~Ga~--ve~is~~ 387 (411)
T COG1503 366 LVDELAELAEESGAK--VEIISDD 387 (411)
T ss_pred HHHHHHHHHHhcCCe--EEEecCc
Confidence 345555566666666 6666654
No 428
>KOG3218|consensus
Probab=20.57 E-value=3.5e+02 Score=19.99 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=29.0
Q ss_pred eEEEecCC-chhHHhhCCeeec-c-CCCcceeeeEEEEEeCCcEEEEEEccCCCceee
Q psy5399 94 IRFLADPN-LEFTKKLGVEHEI-P-VLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTC 148 (156)
Q Consensus 94 f~~~~D~~-~~~~~~~gv~~~~-~-~~~~~~~~~~~~iid~G~I~~~~~~~~~~~~~~ 148 (156)
..+++|++ .++-++|.+...- + .....+..|+ |=++.|.|+.+...++..+|-+
T Consensus 146 H~vL~~eEK~~LL~ry~l~e~qLPRIq~~DpvaRY-yGLKrGqVVKI~r~setag~yi 202 (208)
T KOG3218|consen 146 HQVLTDEEKEELLRRYKLKETQLPRIQKKDPVARY-YGLKRGQVVKIIRRSETAGRYI 202 (208)
T ss_pred eEEcCHHHHHHHHHHhcCCcccCCeeeccChHHhh-hccccCcEEEEEecCccCcceE
Confidence 66666665 4666666664311 0 0001121111 2234899999988877777643
No 429
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.56 E-value=47 Score=19.03 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=5.8
Q ss_pred ceEEEecCC
Q psy5399 93 KIRFLADPN 101 (156)
Q Consensus 93 ~f~~~~D~~ 101 (156)
++|++.|.+
T Consensus 51 ~vP~l~~~~ 59 (73)
T cd03056 51 EVPVLELDG 59 (73)
T ss_pred CCCEEEECC
Confidence 377777654
No 430
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=20.55 E-value=4e+02 Score=20.40 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=40.1
Q ss_pred eEEEEEeeCCCCCCCCcCChhhHHHhHHHHHHc-C-CCEEEEEecCC-----HHHHHHHHHHcCCCcceEEEecCCchhH
Q psy5399 33 KVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK-G-IHEIFCIAVND-----AFVMEAWCRKNNAEGKIRFLADPNLEFT 105 (156)
Q Consensus 33 ~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~~~~-~-~~~v~~is~d~-----~~~~~~~~~~~~~~~~f~~~~D~~~~~~ 105 (156)
+.++.|. |. .++-. . -.+.++...+... | .. |..|+.|+ .+.++.|....+.+ +....++ ..+.
T Consensus 194 ~~vi~~v-Gp--tGvGK-T-Tt~~kLa~~~~~~~g~~~-V~li~~D~~r~~a~eql~~~~~~~~~p--~~~~~~~-~~l~ 264 (282)
T TIGR03499 194 GGVIALV-GP--TGVGK-T-TTLAKLAARFVLEHGNKK-VALITTDTYRIGAVEQLKTYAKILGVP--VKVARDP-KELR 264 (282)
T ss_pred CeEEEEE-CC--CCCCH-H-HHHHHHHHHHHHHcCCCe-EEEEECCccchhHHHHHHHHHHHhCCc--eeccCCH-HHHH
Confidence 3455554 43 34442 2 4566777777654 4 66 88888886 45667788877777 7665554 2344
Q ss_pred Hhh
Q psy5399 106 KKL 108 (156)
Q Consensus 106 ~~~ 108 (156)
+.+
T Consensus 265 ~~l 267 (282)
T TIGR03499 265 KAL 267 (282)
T ss_pred HHH
Confidence 443
No 431
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.40 E-value=1.1e+02 Score=20.05 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=17.7
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHH
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~ 81 (156)
++..+..+..+++|+. +++|+......+
T Consensus 61 ~~~~~~~~~a~~~g~~-vi~iT~~~~s~l 88 (120)
T cd05710 61 KETVAAAKFAKEKGAT-VIGLTDDEDSPL 88 (120)
T ss_pred hHHHHHHHHHHHcCCe-EEEEECCCCCcH
Confidence 5666666666777777 777776544333
No 432
>KOG1515|consensus
Probab=20.27 E-value=2.3e+02 Score=22.58 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCeEEEEEeeCCCCCCCCcCChhhHHHhHHHH-HHcCCCEEEEEecC
Q psy5399 31 GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL-KAKGIHEIFCIAVN 76 (156)
Q Consensus 31 gk~vvl~f~~~~~cp~C~~~~l~~l~~~~~~~-~~~~~~~v~~is~d 76 (156)
..|++|+|..|.||-.-.. .+.+..+-... .+.+ .++||+|
T Consensus 89 ~~p~lvyfHGGGf~~~S~~--~~~y~~~~~~~a~~~~---~vvvSVd 130 (336)
T KOG1515|consen 89 KLPVLVYFHGGGFCLGSAN--SPAYDSFCTRLAAELN---CVVVSVD 130 (336)
T ss_pred CceEEEEEeCCccEeCCCC--CchhHHHHHHHHHHcC---eEEEecC
Confidence 4589999999999987652 46777766665 3334 4555554
No 433
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=20.26 E-value=3.5e+02 Score=19.99 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=28.9
Q ss_pred hHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 54 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 54 ~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
.-.+..+++++.|+. ++.+|.-+......+.++.++.
T Consensus 20 ~~~~~i~~l~~~g~~-~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 20 PAKEVLERLQELGIP-VIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHHCCCe-EEEEcCCCHHHHHHHHHHcCCC
Confidence 345566677788998 8888888888888899988875
No 434
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.25 E-value=3.2e+02 Score=19.22 Aligned_cols=34 Identities=9% Similarity=0.249 Sum_probs=26.4
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHH
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 87 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~ 87 (156)
+...+..+++.++|+. ++.+|.-+...+.++.+.
T Consensus 20 ~~~~~~l~~l~~~g~~-~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 20 PETIEALERLREAGVK-VVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred HHHHHHHHHHHHCCCE-EEEECCCCHHHHHHHHHh
Confidence 6677777888888876 777787788878777776
No 435
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=20.19 E-value=3.1e+02 Score=19.61 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=26.7
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCCHHHHHHHHHHcCCC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 91 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~ 91 (156)
+...+..++++++|.. |+..|.-+...++.+.+..++.
T Consensus 21 ~~~~~~i~~l~~~g~~-~~~~TGR~~~~~~~~~~~l~~~ 58 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIP-VSLVTGNTVPFARALAVLIGTS 58 (215)
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCCcchhHHHHHHHhCCC
Confidence 4555666777778887 7767766667777777777765
No 436
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=20.17 E-value=2.8e+02 Score=19.24 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=29.8
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecCC---------------HHHHHHHHHHcCCCcceE
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVND---------------AFVMEAWCRKNNAEGKIR 95 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d~---------------~~~~~~~~~~~~~~~~f~ 95 (156)
|...+..++++++|.. ++.+|..+ ...+.+.++.+++. |.
T Consensus 32 pgv~e~L~~L~~~g~~-l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd 86 (161)
T TIGR01261 32 KGVIPALLKLKKAGYK-FVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FD 86 (161)
T ss_pred CCHHHHHHHHHHCCCe-EEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--ee
Confidence 6677788888888998 88777642 34566778888988 74
No 437
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=20.15 E-value=3.5e+02 Score=19.57 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=28.4
Q ss_pred hhHHHhHHHHHHcCCCEEEEEecC----CHHHHHHHHHHcC
Q psy5399 53 PGYLAKEKDLKAKGIHEIFCIAVN----DAFVMEAWCRKNN 89 (156)
Q Consensus 53 ~~l~~~~~~~~~~~~~~v~~is~d----~~~~~~~~~~~~~ 89 (156)
..+.+..+++++.|+. +..|+.. ..+.++.|.+.-.
T Consensus 123 ~~i~~~~~~lkk~~I~-v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 123 KDLVKLAKRLKKNNVS-VDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred HHHHHHHHHHHHcCCe-EEEEEeCCCCCCHHHHHHHHHHhc
Confidence 6788899999999998 8777654 4677888887774
Done!