RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5399
(156 letters)
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 239 bits (613), Expect = 1e-82
Identities = 77/157 (49%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + +
Sbjct: 13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAE 72
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE---HEIPVL 117
LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + +
Sbjct: 73 ALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIF 132
Query: 118 GGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 133 GNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 169
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 238 bits (610), Expect = 3e-82
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
M + GD LP + TP K+ +A+ GKK ++F VPGAFTPG S THLPGY+ +
Sbjct: 1 MPIKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAA 60
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-G 119
+ KG+ I C+AVND+FVM+AW + + A+ K++ LADP FTK + +E ++ +
Sbjct: 61 AIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGN 120
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
RSKRYS+V++DG +T++N+EPDG GLTCSL +
Sbjct: 121 VRSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNI 155
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 235 bits (602), Expect = 6e-81
Identities = 69/154 (44%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
+VGD +PD L++E+ P I D +G+K I+F V GAF PG + H+P YL+
Sbjct: 12 SPIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSN-NHIPEYLSLYD 70
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-G 119
K +G H I CIAVND FVM AW + + E KIR LAD + EFT+ LG E + +
Sbjct: 71 KFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGN 130
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDE 153
RS+RY+M++DD KI ++ EPD TGL C L +
Sbjct: 131 NRSRRYAMLIDDNKIRSVSTEPDITGLACLLSIQ 164
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural
genomics, NEW YORK structura genomics research
consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 227 bits (580), Expect = 2e-77
Identities = 69/157 (43%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 1 MCAQVGDTLPDALLHENTPQ--TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK 58
M VGD LP+A E T ++ KGK+V++F VPGAFTP CS+ HLPGYL
Sbjct: 24 MTIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLEN 83
Query: 59 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG 118
+ A+G+ +I +AVND VM AW + GKI FL+D N FTK +G+E ++
Sbjct: 84 RDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGT 143
Query: 119 -GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
G RSKRYSM+V+DG + LNIE T S +
Sbjct: 144 LGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAM 180
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 220 bits (563), Expect = 6e-75
Identities = 69/164 (42%), Positives = 93/164 (56%), Gaps = 11/164 (6%)
Query: 1 MCAQVGDTLPDALLHENTPQT---------KIQIADAIKGKKVIIFGVPGAFTPGCSVTH 51
QVGD LPDA L E + D + GK+V+IFG+PGAFTP CS H
Sbjct: 8 HMIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQH 67
Query: 52 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111
+PGY+ + L+A GI EI+C++VNDAFVM AW R + GK+R +AD + FT LG+
Sbjct: 68 VPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLT 127
Query: 112 HEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
++ G G RS RY+MV+D G + L +E G S +
Sbjct: 128 QDLSARGMGIRSLRYAMVIDGGVVKTLAVEAPG-KFEVSDAASV 170
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 219 bits (560), Expect = 1e-74
Identities = 51/158 (32%), Positives = 80/158 (50%), Gaps = 4/158 (2%)
Query: 1 MCAQVGDTLPDALLHENTPQ---TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA 57
+ A +L A + + + + D K KKV+IFG+PGA+T CS H+P Y
Sbjct: 10 LSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKH 69
Query: 58 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVL 117
KAKG+ + C+A+ND + + AW K A+ I F D + F K L + ++
Sbjct: 70 NIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAG 129
Query: 118 G-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
G RS+R+S V DGK+ LN+E + + S + +
Sbjct: 130 LLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETI 167
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 218 bits (558), Expect = 2e-74
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1 MCAQVGDTLPDALLH---ENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA 57
VGD LPD L E ++ + + GKKVI+FGVPGAFTP CS+ H+PG++
Sbjct: 2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIE 61
Query: 58 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVL 117
K +LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T LG+E ++
Sbjct: 62 KAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEK 121
Query: 118 G-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
G G RS+R++++VDD K+ NIE G T S +++
Sbjct: 122 GLGTRSRRFALLVDDLKVKAANIEGGGE-FTVSSAEDI 158
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 205 bits (523), Expect = 5e-68
Identities = 54/151 (35%), Positives = 77/151 (50%), Gaps = 4/151 (2%)
Query: 1 MCAQVGDTLPDALLHENTPQ--TKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK 58
M + G +P + ++ K VI+F +PGAFTP CS +HLP Y
Sbjct: 1 MSSMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNEL 60
Query: 59 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG 118
K G+ +I ++VND FVM AW +E I F+ D N EFT+ +G+ LG
Sbjct: 61 APVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE-NISFIPDGNGEFTEGMGMLVGKEDLG 119
Query: 119 -GWRSKRYSMVVDDGKITQLNIEPDGTGLTC 148
G RS RYSM+V +G + ++ IEP+ G
Sbjct: 120 FGKRSWRYSMLVKNGVVEKMFIEPNEPGDPF 150
>4dss_A Peroxiredoxin type-2; electron transport, oxidoreductase,
peroxiredoxin, alkyl hydroperoxid reductase; 2.10A
{Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A
Length = 176
Score = 199 bits (509), Expect = 8e-67
Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MCAQVGDTLPDALLH---------------ENTPQTKIQIADAIKGKKVIIFGVPGAFTP 45
M V P PQT + KKVII G P AF+P
Sbjct: 1 MSDLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSP 60
Query: 46 GCSVTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL 102
+V+H+PGY+ +L K K + ++ + V++ F +AW + + I+F +DP
Sbjct: 61 TSTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGC 120
Query: 103 EFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTGLTCSLVDEL 154
FTK +G E + G + S R++MVV++G +T E + GT +T S V+ +
Sbjct: 121 AFTKSIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESV 172
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 198 bits (505), Expect = 4e-66
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 4 QVGDTLPDALLH--------------ENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSV 49
+ D +P+ + T I + KK+++ +PGAFTP CS
Sbjct: 2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCST 61
Query: 50 THLPGYLAK-EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108
+PGY + + +K +I+CI ND +V+++W + + + KI++++D N FT +
Sbjct: 62 KMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSM 120
Query: 109 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGT 144
+ + G R R+ +V++ + ++ E D
Sbjct: 121 NMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQ 157
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 67.7 bits (166), Expect = 3e-15
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 19/148 (12%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC--SVTHLPGYLAKEKD 61
+VGD P+A++ + + K +I VP TP C +A +
Sbjct: 22 KVGDRAPEAVV-VTKDLQEKIVGG-AKDVVQVIITVPSLDTPVCETETKKFNEIMAGMEG 79
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 121
+ ++ ++++ F + +C N + + +D +K GV L G
Sbjct: 80 V------DVTVVSMDLPFAQKRFCESFNIQ-NVTVASDFRYRDMEKYGVLIGEGALKG-I 131
Query: 122 SKRYSMVVD-DGKIT------QLNIEPD 142
R ++D +GK+ ++ EP+
Sbjct: 132 LARAVFIIDKEGKVAYVQLVPEITEEPN 159
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 64.2 bits (157), Expect = 8e-14
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC--SVTHLPGYLAKEKD 61
+VGD PD + + +AD +KGK II +P T C AK D
Sbjct: 19 KVGDQAPDFTV-LTNSLEEKSLAD-MKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKLGD 76
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPVLGGW 120
+ ++ I+ + F WC N + K+ L+D ++ F + GV I L
Sbjct: 77 V------NVYTISADLPFAQARWCGANGID-KVETLSDHRDMSFGEAFGV--YIKELRL- 126
Query: 121 RSKRYSMVVD-DGKI--TQLNIEP 141
R V+D +GK+ + E
Sbjct: 127 -LARSVFVLDENGKVVYAEYVSEA 149
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 64.2 bits (157), Expect = 9e-14
Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 16/136 (11%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKE--KD 61
VG P L I +GK V++ P TP C+ + + +
Sbjct: 19 AVGSPAPAFTL-TGGDLGVISSDQ-FRGKSVLLNIFPSVDTPVCATS------VRTFDER 70
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH-EIPVLGGW 120
A G + C++ + F + +C E + + F + GV + P+ G
Sbjct: 71 AAASGA-TVLCVSKDLPFAQKRFCGAEGTE-NVMPASAFRDSFGEDYGVTIADGPMAGL- 127
Query: 121 RSKRYSMVVD-DGKIT 135
R +V+ DG +
Sbjct: 128 -LARAIVVIGADGNVA 142
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 63.9 bits (156), Expect = 2e-13
Identities = 28/150 (18%), Positives = 55/150 (36%), Gaps = 22/150 (14%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC--SVTHLPGYLAKEKD 61
Q+GD D L + + ++ GK+ ++ P T C SV + ++
Sbjct: 53 QIGDKAKDFTL-VAKDLSDVALSS-FAGKRKVLNIFPSIDTGVCAASVRKFNQLAGELEN 110
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEH-EIPVLGG 119
+ CI+ + F +C + L+ +F + GV E P+ G
Sbjct: 111 T------VVLCISSDLPFAQSRFCGAEGLS-NVITLSTLRGADFKQAYGVAITEGPLAGL 163
Query: 120 WRSKRYSMVVD-DGKIT------QLNIEPD 142
+ R +V+D + ++ EP+
Sbjct: 164 --TARAVVVLDGQDNVIYSELVNEITTEPN 191
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 62.7 bits (153), Expect = 2e-13
Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 16/144 (11%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC--SVTHLPGYLAKEKD 61
QVG+ + + +L N + + D K+ ++ P T C SV AK +
Sbjct: 18 QVGEIVENFILVGNDLA-DVALND-FASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN 75
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGW 120
+ CI+ + F +C E + ++ N +LGV+ + L G
Sbjct: 76 T------IVLCISADLPFAQARFCGAEGIE-NAKTVSTFRNHALHSQLGVDIQTGPLAGL 128
Query: 121 RSKRYSMVVD-DGKI--TQLNIEP 141
+ R +V+D + +QL E
Sbjct: 129 -TSRAVIVLDEQNNVLHSQLVEEI 151
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 63.7 bits (155), Expect = 3e-13
Identities = 16/141 (11%), Positives = 41/141 (29%), Gaps = 8/141 (5%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+ GD LP +L + + + +I + + L +
Sbjct: 23 RKGDYLPSFMLV-DDQKHDAALES-FSHTPKLIVTLLSVDEDEHA-GLLLLRETRRFLDS 79
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 123
+ ++ I V+ + ++ +F K+ GV L G+ +
Sbjct: 80 WPHL-KLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGY-TS 137
Query: 124 RYSMVVD-DGKI--TQLNIEP 141
++ D + ++
Sbjct: 138 PAIILADAANVVHYSERLANT 158
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 62.2 bits (152), Expect = 3e-13
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 20/147 (13%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
GD PD + + ++ +AD GKK +I VP T C + + +
Sbjct: 21 NEGDFAPDFTV-LDNDLNQVTLAD-YAGKKKLISVVPSIDTGVCD-QQTRKFNSDASKEE 77
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRS 122
+ I+ + F + WC + + L+D +L F + GV + L
Sbjct: 78 G----IVLTISADLPFAQKRWCASAGLD-NVITLSDHRDLSFGENYGV--VMEELRL--L 128
Query: 123 KRYSMVVD-DGKIT------QLNIEPD 142
R V+D D K+ + PD
Sbjct: 129 ARAVFVLDADNKVVYKEIVSEGTDFPD 155
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 61.5 bits (150), Expect = 7e-13
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 23/149 (15%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC--SVTHLPGYLAKEKD 61
QVGD D L T +K +AD GKK ++ VP T C LA +
Sbjct: 17 QVGDKALDFSL-TTTDLSKKSLAD-FDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN 74
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGW 120
+ ++++ F + WC + L+D + F + + I
Sbjct: 75 T------VVLTVSMDLPFAQKRWCGAEGLD-NAIMLSDYFDHSFGRDYAL--LINEWH-- 123
Query: 121 RSKRYSMVVD-DGKIT------QLNIEPD 142
R V+D D I +N EP+
Sbjct: 124 LLARAVFVLDTDNTIRYVEYVDNINSEPN 152
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 55.3 bits (134), Expect = 1e-10
Identities = 33/150 (22%), Positives = 52/150 (34%), Gaps = 16/150 (10%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
VG T PD L + Q + + K V++ P AFT C L
Sbjct: 7 HMLNVGATAPDFTL-RDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQ-GELDQLRDHLP 64
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LAD--PNLEFTKKLGVEHEIPV 116
+ + I+V + W + F L+D P+ ++ GV +E
Sbjct: 65 EFENDDS-AALAISVGPPPTHKIWATQ----SGFTFPLLSDFWPHGAVSQAYGVFNE--- 116
Query: 117 LGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
G + R + VVD G I ++ G
Sbjct: 117 QAGI-ANRGTFVVDRSGIIRFAEMKQPGEV 145
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 54.6 bits (132), Expect = 6e-10
Identities = 33/155 (21%), Positives = 66/155 (42%), Gaps = 15/155 (9%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK-E 59
M +G+ P+ ++ K++ D + ++F P FTP + T L G + + E
Sbjct: 1 MGITLGEVFPN--FEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVST-TEL-GRVIQLE 56
Query: 60 KDLKAKGIHEIFCIAVNDAFVMEAWCR----KNNAEGKIRF--LADPNLEFTKKLGVEH- 112
D K +G+ ++ ++ ++ + W + +G + + +AD E KLG+
Sbjct: 57 GDFKKRGV-KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDP 115
Query: 113 -EIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
E G + R ++ D K+ + P TG
Sbjct: 116 DERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTG 150
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 54.5 bits (132), Expect = 6e-10
Identities = 32/154 (20%), Positives = 54/154 (35%), Gaps = 12/154 (7%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK-E 59
M +G T P+ + ++ I+ I+F P FTP C+ T L L K
Sbjct: 1 MGYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCT-TEL-AELGKMH 58
Query: 60 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEH-- 112
+D ++ + N + W + K + D + E KL +
Sbjct: 59 EDFLKLNC-KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQ 117
Query: 113 EIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
E + G + R + + KI + P TG
Sbjct: 118 EKDITGLPLTCRCLFFISPEKKIKATVLYPATTG 151
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 53.4 bits (129), Expect = 2e-09
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 17/157 (10%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK-E 59
+GD P+ NT +I+ D + I+F P FTP C+ T L G AK
Sbjct: 3 GGLLLGDVAPN--FEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCT-TEL-GRAAKLA 58
Query: 60 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE------GKIRF--LADPNLEFTKKLGVE 111
+ + + ++ ++++ AW + NA K+ F + D N E LG+
Sbjct: 59 PEFAKRNV-KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGML 117
Query: 112 H--EIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
E G + R V D K+ + P TG
Sbjct: 118 DPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG 154
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 51.1 bits (123), Expect = 6e-09
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
++G+ PD L +T K++++ +KGK V++ P AFT C+ + +
Sbjct: 5 EIGELAPDFEL-PDTELKKVKLSA-LKGKVVVLAFYPAAFTQVCT-KEMCTFRDSMAKFN 61
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWR 121
+ I+V+ F +A+ N + F L+D N E KK V E P L G+
Sbjct: 62 QVNA-VVLGISVDPPFSNKAFKEHNK----LNFTILSDYNREVVKKYNVAWEFPALPGYV 116
Query: 122 -SKRYSMVVD-DGKITQ 136
+KR V+D +GK+
Sbjct: 117 LAKRAVFVIDKEGKVRY 133
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 50.0 bits (120), Expect = 2e-08
Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 11/143 (7%)
Query: 6 GDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK 65
GD T I + GK ++F P FT C T + + + + +
Sbjct: 21 GDLSKVDAKQPGDYFTTITSDE-HPGKWRVVFFWPKDFTFVCP-TEIAAFSKLNDEFEDR 78
Query: 66 GIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWRSK 123
+I ++++ F W ++N + F L+D E ++ GV + V +
Sbjct: 79 DA-QILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGV-----AD 132
Query: 124 RYSMVVD-DGKITQLNIEPDGTG 145
R + +VD + +I ++ G
Sbjct: 133 RVTFIVDPNNEIQFVSATAGSVG 155
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 49.9 bits (120), Expect = 2e-08
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 5 VGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
V PD A+L N +++ + VI+F P FT C T + + + K
Sbjct: 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCP-TEIIAFDKRVK 61
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
D KG + ++++ V AW + G++ F +AD ++ V E
Sbjct: 62 DFHEKGF-NVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE 118
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 49.7 bits (119), Expect = 4e-08
Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Query: 3 AQVGDTLPDALLHENTPQTKIQIAD--AIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
+G+ P+ + T I++ D +GK ++F P FTP C+ T + + +
Sbjct: 5 PLIGERFPE--MEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYE 61
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF----LADPNLEFTKKLGVEHEIPV 116
D + G+ ++ ++V+ F W +R +ADP ++LG+ H
Sbjct: 62 DFQRLGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHA--- 117
Query: 117 LGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
+ R +VD G I + P G
Sbjct: 118 ESATHTVRGVFIVDARGVIRTMLYYPMELG 147
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 48.8 bits (117), Expect = 5e-08
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 11/137 (8%)
Query: 4 QVGDTLPDALLHENTPQTKIQIAD-AIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62
++G+ PD L N + + + +G+ ++ P AF+P C+ L + K L
Sbjct: 6 ELGEKAPDFTL-PNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCT-KELCTFRDKMAQL 63
Query: 63 KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGW 120
+ E+ I+V+ + ++ + +N + F L+D N E K V HE
Sbjct: 64 EKANA-EVLAISVDSPWCLKKFKDENR----LAFNLLSDYNREVIKLYNVYHEDLKGLKM 118
Query: 121 RSKRYSMVVD-DGKITQ 136
+KR +V DG +
Sbjct: 119 VAKRAVFIVKPDGTVAY 135
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 47.6 bits (114), Expect = 2e-07
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 1 MCAQVGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL 56
VG P A+ +N+ ++ + I K V+++ P FT C + +
Sbjct: 19 SPTYVGKEAPFFKAEAVFGDNS-FGEVNLTQFIGKKYVLLYFYPLDFTFVCP-SEIIALD 76
Query: 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVE 111
+ + E+ +V+ + AW G I+ L+D +K V
Sbjct: 77 KALDAFHERNV-ELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVL 135
Query: 112 HE 113
+
Sbjct: 136 FD 137
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 46.8 bits (112), Expect = 3e-07
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88
+KGK I+ P F+ C T L + +LK G+ E++ ++ + FV +AW +
Sbjct: 29 LKGKWSIVVFYPADFSFVCP-TELEDVQKEYAELKKLGV-EVYSVSTDTHFVHKAWHENS 86
Query: 89 NAEGKIRF--LADPNLEFTKKLGVEHE 113
A G I + + DP+ +++ V +E
Sbjct: 87 PAVGSIEYIMIGDPSQTISRQFDVLNE 113
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 46.4 bits (111), Expect = 4e-07
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 11/121 (9%)
Query: 1 MCAQVGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA 57
A++ P+ L N K+ ++ KGK V++F P FT C T + +
Sbjct: 4 GAAKLNHPAPEFDDMALMPNGTFKKVSLSS-YKGKYVVLFFYPMDFTFVCP-TEIIQFSD 61
Query: 58 KEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEH 112
K E+ + + + W RK G + LAD + GV
Sbjct: 62 DAKRFAEINT-EVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLD 120
Query: 113 E 113
E
Sbjct: 121 E 121
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 46.0 bits (110), Expect = 5e-07
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 2 CAQVGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAK 58
A+ PD L N K+ + KGK +++F P FT C T + + +
Sbjct: 5 EAEDLHPAPDFNETALMPNGTFKKVALTS-YKGKWLVLFFYPMDFTFVCP-TEICQFSDR 62
Query: 59 EKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
K+ G E+ +++ + AW RK G++ LAD K GV E
Sbjct: 63 VKEFSDIGC-EVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKE 121
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 46.1 bits (110), Expect = 7e-07
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 1 MCAQVGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL 56
M P+ A++ N +I + D +GK V++F P FT C T + +
Sbjct: 38 MVLLPNRPAPEFKGQAVI--NGEFKEICLKD-YRGKYVVLFFYPADFTFVCP-TEIIAFS 93
Query: 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVE 111
+ ++ ++ ++ + + + AW RK+ G ++ LAD E +K GV
Sbjct: 94 DQVEEFNSRNC-QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVF 152
Query: 112 HE 113
E
Sbjct: 153 DE 154
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 45.7 bits (109), Expect = 8e-07
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 1 MCAQVGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL 56
M AQV P A++ + ++ + KGK V++ +P AFT T + +
Sbjct: 21 MVAQVQKQAPTFKKTAVV--DGVFDEVSLDK-YKGKYVVLAFIPLAFTFVSP-TEIIAFS 76
Query: 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVE 111
K + +G ++ + + + + AW RK G I LAD N ++ GV
Sbjct: 77 EAAKKFEEQGA-QVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVL 135
Query: 112 HE 113
E
Sbjct: 136 IE 137
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 45.6 bits (109), Expect = 9e-07
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Query: 1 MCAQVGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL 56
A++G PD A++ + +++++D KGK V++F P FT T + +
Sbjct: 3 GNARIGKPAPDFKATAVV--DGAFKEVKLSD-YKGKYVVLFFYPLDFTFVAP-TEIIAFS 58
Query: 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVE 111
+ +D + G E+ ++V+ F AW RK G + LAD ++ GV
Sbjct: 59 NRAEDFRKLGC-EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVL 117
Query: 112 HE 113
Sbjct: 118 KT 119
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88
+G+ + F P FT T L ++L+ G+ +++ ++ + F +AW +
Sbjct: 28 TEGRWSVFFFYPADFTFVSP-TELGDVADHYEELQKLGV-DVYSVSTDTHFTHKAWHSSS 85
Query: 89 NAEGKIRF--LADPNLEFTKKLGVEHE 113
KI++ + DP T+ E
Sbjct: 86 ETIAKIKYAMIGDPTGALTRNFDNMRE 112
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 45.0 bits (107), Expect = 1e-06
Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 1 MCAQVGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLA 57
+ V + L++N + ++ I K + P +T C T + +
Sbjct: 23 KLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCP-TEIIEFNK 81
Query: 58 KEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEH 112
KD + K + E+ I+V+ + AW + G + F ++D N + +K V +
Sbjct: 82 HIKDFENKNV-ELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLY 140
Query: 113 E 113
+
Sbjct: 141 D 141
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 45.4 bits (108), Expect = 1e-06
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 22 KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81
++++ D +GK ++ F P FT C T + + + ++ ++ E+ +V+ F
Sbjct: 83 ELKLTD-YRGKYLVFFFYPLDFTFVCP-TEIIAFGDRLEEFRSINT-EVVACSVDSQFTH 139
Query: 82 EAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
AW R+ G IR L+D + +K GV E
Sbjct: 140 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 176
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 44.9 bits (107), Expect = 2e-06
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 22 KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81
++++ D +GK ++ F P FT C T + + + ++ ++ E+ +V+ F
Sbjct: 40 ELKLTD-YRGKYLVFFFYPLDFTFVCP-TEIIAFGDRLEEFRSINT-EVVACSVDSQFTH 96
Query: 82 EAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
AW R+ G IR L+D + +K GV E
Sbjct: 97 LAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 133
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 44.6 bits (106), Expect = 2e-06
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 22 KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81
+++++D +GK ++ F P FT C T + + + + +A E+ +V+ F
Sbjct: 69 ELKLSD-YRGKYLVFFFYPLDFTFVCP-TEIIAFSDRVHEFRAINT-EVVACSVDSQFTH 125
Query: 82 EAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
AW RK G ++ L+D + +K GV E
Sbjct: 126 LAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLE 162
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 43.8 bits (104), Expect = 5e-06
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 1 MCAQVGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYL 56
V P A++ + +I + D KGK +++F P FT C T + +
Sbjct: 25 PAPAVTQHAPYFKGTAVV--SGEFKEISLDD-FKGKYLVLFFYPLDFTFVCP-TEIIAFS 80
Query: 57 AKEKDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVE 111
K + E+ ++V+ F AW RKN G + L+D + ++ GV
Sbjct: 81 DKASEFHDVNC-EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVL 139
Query: 112 HE 113
E
Sbjct: 140 LE 141
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 42.2 bits (100), Expect = 1e-05
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 22 KIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 81
++ ++D I K V+++ P FT C + + K + + E+ +V+ F
Sbjct: 22 EVSLSDFIGKKYVLLYFYPLDFTFVCP-SEIIALDKALDSFKERNV-ELLGCSVDSKFTH 79
Query: 82 EAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 113
AW G I+ ++D + + V
Sbjct: 80 LAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFN 116
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical
2-Cys peroxiredoxin, oxidoreductase; 1.80A
{Saccharomyces cerevisiae} SCOP: c.47.1.10
Length = 159
Score = 34.9 bits (81), Expect = 0.003
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 4 QVGDTLPDALLHENTPQTKIQIAD-AIKGKKVIIFGVPGAFTPGC 47
++GD +PD L N I + + V+ F P A TPG
Sbjct: 8 EIGDPIPDLSL-LNEDNDSISLKKITENNRVVVFFVYPRASTPGS 51
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.016
Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 22/127 (17%)
Query: 19 PQTKIQIADAIK----GKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIF--- 71
Q +++ A+ K V+I GV G+ G + + + ++ K +IF
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGS---GKTW--VALDVCLSYKVQCKMDFKIFWLN 188
Query: 72 ---CIAVNDAFVM-EAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYS- 126
C + M + + + R N++ ++ E+ L +SK Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRL--LKSKPYEN 245
Query: 127 --MVVDD 131
+V+ +
Sbjct: 246 CLLVLLN 252
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 31.5 bits (72), Expect = 0.065
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC 47
++ D L + T+ + G ++I+ P TPG
Sbjct: 10 ELPAATFDLPL-SLSGGTQTTLRA-HAGHWLVIYFYPKDSTPGA 51
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 31.1 bits (71), Expect = 0.093
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGC 47
+ +L + L + T ++D + ++++ P TPG
Sbjct: 26 TLNHSLLNHPL-MLSGSTCKTLSD-YTNQWLVLYFYPKDNTPGS 67
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET: CIT;
2.15A {Sulfolobus solfataricus}
Length = 161
Score = 30.3 bits (69), Expect = 0.15
Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 28/142 (19%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKE---- 59
+VGD P KI ++D I ++++ P TPG + +E
Sbjct: 3 KVGDKAPLFEG-IADNGEKISLSDYIGKHNIVLYFYPKDDTPGST---------REASAF 52
Query: 60 ----KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP 115
LK + + ++ +D + + K ++DP+ + + G
Sbjct: 53 RDNWDLLKDYDV-VVIGVSSDDINSHKRFKEKYKL--PFILVSDPDKKIRELYG------ 103
Query: 116 VLGGWRSKRYSMVVD-DGKITQ 136
G R + V+D G I
Sbjct: 104 AKGFILPARITFVIDKKGIIRH 125
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI;
2.85A {Plasmodium falciparum}
Length = 375
Score = 28.8 bits (65), Expect = 0.74
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 8/63 (12%)
Query: 9 LPDALLHEN---TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAK 65
L L N +A I ++IF VP + + + + + AK
Sbjct: 82 LKGVPLPHNIVAHSD----LASVINDADLLIFIVPCQYLESV-LASIKESESIKIASHAK 136
Query: 66 GIH 68
I
Sbjct: 137 AIS 139
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+],
cytoplasmic; two independent domains, GXGXXG motif,
oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A*
1wpq_A* 2pla_A*
Length = 354
Score = 28.7 bits (65), Expect = 0.86
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 9 LPDALLHEN---TPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL--K 63
LP L N P + A + ++IF VP F L G+L
Sbjct: 69 LPGHKLPPNVVAVPD----VVQAAEDADILIFVVPHQFIGKI-CDQLKGHLKANATGISL 123
Query: 64 AKGI 67
KG+
Sbjct: 124 IKGV 127
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 27.4 bits (61), Expect = 1.6
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKE-KDLKAKGIHEIFCIAVNDAFVME 82
+ VII A T G L Y +E + G ++ + V D +
Sbjct: 105 RTASVII-----ALTDGELHEDLFFYSEREANRSRDLGA-IVYAVGVKDFNETQ 152
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.0 bits (60), Expect = 3.4
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 33/135 (24%)
Query: 6 GDTLPDALLHENTPQTKIQIADAI-------KGKKVIIFGVP-------------GAFTP 45
G + DAL E ++ D + GKK ++G P G
Sbjct: 333 GKPIADALTLERG-----RLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGCEPT 387
Query: 46 GCSVTHLPGYLAKE-KDLKAKGIHEIFCIAV--NDAFVMEAWCRKNNAE-----GKIRFL 97
+ K + + D + + + +F+
Sbjct: 388 VILSHNANKRWQKAMNKMLDASPYGRDSEVFINCDLWHFRSLMFTRQPDFMIGNSYGKFI 447
Query: 98 ADPNLEFTKKLGVEH 112
L K V
Sbjct: 448 QRDTLAKGKAFEVPL 462
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic
protein, arginine protein binding, transport protein;
1.92A {Chlamydia trachomatis}
Length = 242
Score = 26.5 bits (59), Expect = 3.9
Identities = 8/98 (8%), Positives = 22/98 (22%), Gaps = 16/98 (16%)
Query: 21 TKIQIADAIKGKKVIIFGVPGAFT--------PGCSVTHLPGYLAKEKDLKAKGIHEIFC 72
+ + V V + L ++
Sbjct: 108 ENKHPLPLTQYRSV---AVQTGTYQEAYLQSLSEVHIRSFDSTLEVLMEVMHGKSP---- 160
Query: 73 IAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110
+AV + + + K+ + P ++ G+
Sbjct: 161 VAVLEPSIAQVVL-KDFPALSTATIDLPEDQWVLGYGI 197
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 26.2 bits (58), Expect = 5.2
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 33/133 (24%)
Query: 6 GDTLPDALLHENTPQTKIQIADAI-------KGKKVIIFGVP-------------GAFTP 45
G +P +L E ++ D + GK+ ++G P G
Sbjct: 337 GQPIPASLTKERG-----RLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGCEPV 391
Query: 46 GCSVTHLPGYLAKEKDLKAKGIHEIFCIAV---NDAFVMEAWCRKNNAE-----GKIRFL 97
+ K D V D + + + + + +F+
Sbjct: 392 HILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLRSLVFTDKPDFMIGNSYGKFI 451
Query: 98 ADPNLEFTKKLGV 110
L K+ V
Sbjct: 452 QRDTLHKGKEFEV 464
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA
binding motif, transcriptional regulator, bacter
antitoxin, Zn binding protein, transcription
regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB:
3gn5_A* 3gn5_B* 2kz8_A
Length = 133
Score = 25.5 bits (55), Expect = 5.7
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88
+G+K ++ G+ G + C + + + + K + +K
Sbjct: 24 FRGRKTVLKGIHGLYCVHCEESIMNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKL 83
Query: 89 NAEGKIRFLADPNLEFTKKLGV 110
+ K E ++ G
Sbjct: 84 SLTQK---------EASEIFGG 96
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic,
transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae}
PDB: 3g41_A* 3n26_A*
Length = 268
Score = 25.7 bits (57), Expect = 7.0
Identities = 13/98 (13%), Positives = 24/98 (24%), Gaps = 16/98 (16%)
Query: 21 TKIQIADAIKGKKVIIFGVPGAFT--------PGCSVTHLPGYLAKEKDLKAKGIHEIFC 72
+ + + V V PG V L +++
Sbjct: 129 LETPVLPLTQYSSV---AVQTGTYQEHYLLSQPGICVRSFDSTLEVIMEVRYGKSP---- 181
Query: 73 IAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 110
+AV + V K+ L P + G+
Sbjct: 182 VAVLEPSVGRVVL-KDFPNLVATRLELPPECWVLGCGL 218
>3nrt_A Putative ryanodine receptor; PSI-2, protein structure initiative,
structural genomics, MI center for structural genomics
(MCSG); 2.54A {Bacteroides thetaiotaomicron}
Length = 103
Score = 24.9 bits (54), Expect = 7.7
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 40 PGAFTPG---CSVTHLPGYLAKEKDLKAKGIHEIFC 72
+ P S+ LP L + + A+ +HE++
Sbjct: 8 KLDYIPEPMDLSLVDLPESLIQLSERIAENVHEVWA 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.426
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,536,065
Number of extensions: 150564
Number of successful extensions: 546
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 62
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)