RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5399
(156 letters)
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 179
Score = 120 bits (303), Expect = 4e-36
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 17/157 (10%)
Query: 4 QVGDTLPDALLH--------------ENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSV 49
+ D +P+ + T I + KK+++ +PGAFTP CS
Sbjct: 1 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCST 60
Query: 50 THLPGYLAK-EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 108
+PGY + + +K +I+CI ND +V+++W + + + KI++++D N FT +
Sbjct: 61 KMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSM 119
Query: 109 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGT 144
+ + G R R+ +V++ + ++ E D
Sbjct: 120 NMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQ 156
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 107 bits (268), Expect = 4e-31
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 3/154 (1%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+VGD +P + E P K+ +A+ KGKK ++FGVPGAFTPGCS THLPG++ + + LK
Sbjct: 4 KVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALK 63
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGG---W 120
AKG+ + C++VNDAFV W R + AEGK+R LADP F K+ + + ++
Sbjct: 64 AKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNR 123
Query: 121 RSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 124 RLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 157
>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam
poplar(Populus trichocarpa) [TaxId: 3694]}
Length = 162
Score = 103 bits (256), Expect = 3e-29
Identities = 67/155 (43%), Positives = 98/155 (63%), Gaps = 5/155 (3%)
Query: 4 QVGDTLPDALLH---ENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
VGD LPD L E ++ + + GKKVI+FGVPGAFTP CS+ H+PG++ K
Sbjct: 5 AVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAG 64
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-G 119
+LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T LG+E ++ G G
Sbjct: 65 ELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLG 124
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
RS+R++++VDD K+ NIE G T S +++
Sbjct: 125 TRSRRFALLVDDLKVKAANIEGGGE-FTVSSAEDI 158
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 163
Score = 83.8 bits (206), Expect = 7e-22
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 4/146 (2%)
Query: 6 GDTLPDALLH--ENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
G +P + + ++ K VI+F +PGAFTP CS +HLP Y K
Sbjct: 4 GKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFK 63
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRS 122
G+ +I ++VND FVM AW I F+ D N EFT+ +G+ LG G RS
Sbjct: 64 KYGVDDILVVSVNDTFVMNAWKEDEK-SENISFIPDGNGEFTEGMGMLVGKEDLGFGKRS 122
Query: 123 KRYSMVVDDGKITQLNIEPDGTGLTC 148
RYSM+V +G + ++ IEP+ G
Sbjct: 123 WRYSMLVKNGVVEKMFIEPNEPGDPF 148
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 64.8 bits (157), Expect = 5e-14
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 8/146 (5%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+G+ P+ + + K+ +GK ++F P FTP C+ T + + +D +
Sbjct: 2 LIGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCT-TEFVSFARRYEDFQ 60
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF----LADPNLEFTKKLGVEHEIPVLGG 119
G+ + ++V+ F W +R +ADP ++LG+ H
Sbjct: 61 RLGVD-LIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHT 119
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTG 145
R +V G I + P G
Sbjct: 120 VRG--VFIVDARGVIRTMLYYPMELG 143
>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii
yoelii [TaxId: 73239]}
Length = 219
Score = 62.9 bits (152), Expect = 2e-13
Identities = 28/143 (19%), Positives = 49/143 (34%), Gaps = 9/143 (6%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+G T P+ + ++ I+ I+F P FTP C T L K +
Sbjct: 3 HLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVC--TTELAELGKMHEDF 60
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEG-----KIRFLADPNLEFTKKLGV--EHEIPV 116
K ++ + N + W G +I + D + E KL + E E +
Sbjct: 61 LKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDI 120
Query: 117 LGGWRSKRYSMVVDDGKITQLNI 139
G + R + K + +
Sbjct: 121 TGLPLTCRCLFFISPEKKIKATV 143
>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 57.8 bits (138), Expect = 8e-12
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 23/158 (14%)
Query: 4 QVGDTLPD--------------ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSV 49
+GD P T I + GK ++F P FT C
Sbjct: 4 TIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDE-HPGKWRVVFFWPKDFTFVCPT 62
Query: 50 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKK 107
++ +I ++++ F W ++N + F L+D E ++
Sbjct: 63 EIAAFSKLNDEFEDRD--AQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQA 120
Query: 108 LGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTG 145
GV + G + +V + +I ++ G
Sbjct: 121 AGVLNA----DGVADRVTFIVDPNNEIQFVSATAGSVG 154
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 57.2 bits (137), Expect = 1e-11
Identities = 21/141 (14%), Positives = 44/141 (31%), Gaps = 6/141 (4%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
Q G L + + + GK+ ++ P T C + + +
Sbjct: 19 QAGSKAQTFTL-VAKDLSDVTLGQ-FAGKRKVLNIFPSIDTGVC-AASVRKF---NQLAT 72
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 123
+ CI+ + F +C I N EF + GV L G ++
Sbjct: 73 EIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAAR 132
Query: 124 RYSMVVDDGKITQLNIEPDGT 144
++ ++ + + + T
Sbjct: 133 AVVVIDENDNVIFSQLVDEIT 153
>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
[TaxId: 727]}
Length = 164
Score = 54.1 bits (129), Expect = 2e-10
Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 8/142 (5%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
QVG+ + + +L + + D K+ ++ P T C+ + +
Sbjct: 17 QVGEIVENFIL-VGNDLADVALND-FASKRKVLNIFPSIDTGVCATSV----RKFNQQAA 70
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 123
+ CI+ + F +C E N +LGV+ + L +
Sbjct: 71 KLSNTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPL-AGLTS 129
Query: 124 RYSMVVD-DGKITQLNIEPDGT 144
R +V+D + + +
Sbjct: 130 RAVIVLDEQNNVLHSQLVEEIK 151
>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 220
Score = 51.3 bits (122), Expect = 3e-09
Identities = 31/144 (21%), Positives = 51/144 (35%), Gaps = 14/144 (9%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
+GD P+ NT +I+ D + I+F P FTP C+ T L +
Sbjct: 2 LLGDVAPNFEA--NTTVGRIRFHDFLGDSWGILFSHPRDFTPVCT-TELGRAAKLAPEFA 58
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEG--------KIRFLADPNLEFTKKLGV--EHE 113
+ ++ ++++ AW + NA + D N E LG+ E
Sbjct: 59 KRN-VKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAE 117
Query: 114 IPVLGGWRSKRYSMVVDDGKITQL 137
G + R V K +L
Sbjct: 118 KDEKGMPVTARVVFVFGPDKKLKL 141
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 50.9 bits (121), Expect = 4e-09
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 16/152 (10%)
Query: 3 AQVGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKE 59
A+ PD L N K+ + KGK +++F P FT C +
Sbjct: 3 AEDLHPAPDFNETALMPNGTFKKVALTS-YKGKWLVLFFYPMDFTFVCPTEI--CQFSDR 59
Query: 60 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI-----RFLADPNLEFTKKLGVEHEI 114
+ E+ +++ + AW G + LAD K GV E
Sbjct: 60 VKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKE- 118
Query: 115 PVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
+ R ++D + Q+ + G
Sbjct: 119 ---EDGVAYRGLFIIDPKQNLRQITVNDLPVG 147
>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 197
Score = 48.6 bits (115), Expect = 3e-08
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 15/151 (9%)
Query: 3 AQVGDTLPD--ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
A++G PD A + +++++D KGK V++F P FT C +
Sbjct: 5 ARIGKPAPDFKATAVVDGAFKEVKLSD-YKGKYVVLFFYPLDFTFVC--PTEIIAFSNRA 61
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG-----KIRFLADPNLEFTKKLGVEHEIP 115
+ K E+ ++V+ F AW EG I LAD ++ GV
Sbjct: 62 EDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT-- 119
Query: 116 VLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
+ R ++D G + Q+ + G
Sbjct: 120 --DEGIAYRGLFIIDGKGVLRQITVNDLPVG 148
>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 46.8 bits (110), Expect = 9e-08
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 30 KGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 89
KGK +++F P FT C + + E+ ++V+ F AW
Sbjct: 25 KGKYLVLFFYPLDFTFVCPTEI--IAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPR 82
Query: 90 AEGKIRFLADPNL-EFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
G + + L + TK++ ++ + + G + R ++D +G I L++ G
Sbjct: 83 KNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVG 140
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 46.8 bits (110), Expect = 1e-07
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 11/146 (7%)
Query: 5 VGDTLPD---ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKD 61
+G + ++ AD +KGK I+ P F+ C + KE
Sbjct: 3 IGTEVQPFRAQAFQSGKDFFEVTEAD-LKGKWSIVVFYPADFSFVCPTEL--EDVQKEYA 59
Query: 62 LKAKGIHEIFCIAVNDAFVMEAWCRKNNA--EGKIRFLADPNLEFTKKLGVEHEIPVLGG 119
K E++ ++ + FV +AW + A + + DP+ +++ V +E G
Sbjct: 60 ELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNE---ETG 116
Query: 120 WRSKRYSMVVDDGKITQLNIEPDGTG 145
+ ++ DG I + I DG G
Sbjct: 117 LADRGTFIIDPDGVIQAIEINADGIG 142
>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin
peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii
[TaxId: 5861]}
Length = 170
Score = 45.3 bits (106), Expect = 3e-07
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 11/134 (8%)
Query: 17 NTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVN 76
+ ++ ++D I K V+++ P FT C L K D + E+ +V+
Sbjct: 13 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVC--PSEIIALDKALDSFKERNVELLGCSVD 70
Query: 77 DAFVMEAWCRKNNAEG-----KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDD 131
F AW + ++G K ++D + + V + + ++
Sbjct: 71 SKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNE----SVALRAFVLIDKQ 126
Query: 132 GKITQLNIEPDGTG 145
G + L + G
Sbjct: 127 GVVQHLLVNNLALG 140
>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
{Salmonella typhimurium [TaxId: 90371]}
Length = 186
Score = 43.3 bits (101), Expect = 2e-06
Identities = 25/137 (18%), Positives = 48/137 (35%), Gaps = 11/137 (8%)
Query: 5 VGDTLPD--ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDL 62
+ + +N ++ D +G+ + F P FT G +A +
Sbjct: 3 INTKIKPFKNQAFKNGEFIEVTEKD-TEGRWSVFFFYPADFTFVSPTEL--GDVADHYEE 59
Query: 63 KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL--ADPNLEFTKKLGVEHEIPVLGGW 120
K +++ ++ + F +AW + KI++ DP T+ E
Sbjct: 60 LQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMRED----EG 115
Query: 121 RSKRYSMVVDDGKITQL 137
+ R + VVD I Q
Sbjct: 116 LADRATFVVDPQGIIQA 132
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 42.9 bits (100), Expect = 2e-06
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 17/151 (11%)
Query: 5 VGDTLPD----ALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEK 60
V PD A+L N +++ + VI+F P FT C T + + + K
Sbjct: 3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVC-PTEIIAFDKRVK 61
Query: 61 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFL-----ADPNLEFTKKLGVEHEIP 115
D KG + ++++ V AW +G I + AD ++ V E
Sbjct: 62 DFHEKGF-NVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-- 118
Query: 116 VLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 145
+ R + ++D + K+ I G
Sbjct: 119 ---EAIALRGAFLIDKNMKVRHAVINDLPLG 146
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 41.1 bits (95), Expect = 8e-06
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 9/151 (5%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
++GD +PD L N I + + +V++F V + S G+ ++LK
Sbjct: 6 EIGDPIPDLSL-LNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELK 64
Query: 64 AKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 123
+F ++ + + + K N L+DP EF LG + S
Sbjct: 65 EYAA--VFGLSADSVTSQKKFQSKQN--LPYHLLSDPKREFIGLLGAKKT----PLSGSI 116
Query: 124 RYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 154
R + DGK+ ++ E+
Sbjct: 117 RSHFIFVDGKLKFKRVKISPEVSVNDAKKEV 147
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 26.8 bits (59), Expect = 0.65
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFG 38
+C Q+ D + DA L ++ P K+ K +++ G
Sbjct: 18 ICDQISDAVLDAHLQQD-PDAKVACETVAKTGMILLAG 54
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 25.3 bits (55), Expect = 1.9
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 1 MCAQVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGV 39
+ Q+ D + DA+L ++ P+ ++ +K V++ G
Sbjct: 18 IADQISDAVLDAILEQD-PKARVACETYVKTGMVLVGGE 55
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 25.3 bits (54), Expect = 2.8
Identities = 10/112 (8%), Positives = 28/112 (25%), Gaps = 8/112 (7%)
Query: 4 QVGDTLPDALLHENTPQTKIQIADAIKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLK 63
++ +P+ + ++ I K +I ++ C + E K
Sbjct: 2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIH----FWSISCHLCKEAMPQVNEFRDK 57
Query: 64 AKGIHEIFCIAVND----AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 111
+ + + + + + D + T E
Sbjct: 58 YQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFENE 109
>d1ty0a1 b.40.2.2 (A:4-99) Streptococcal pyrogenic exotoxin Spe-J
{Streptococcus pyogenes [TaxId: 1314]}
Length = 96
Score = 24.1 bits (52), Expect = 4.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 27 DAIKGKKVIIFGVPGAFTP 45
K +KV IFG+P FT
Sbjct: 60 KFTKNQKVNIFGLPYIFTR 78
>d1an8a1 b.40.2.2 (A:3-95) Streptococcal superantigen Spe-C
{Streptococcus pyogenes [TaxId: 1314]}
Length = 93
Score = 24.1 bits (52), Expect = 4.4
Identities = 3/19 (15%), Positives = 6/19 (31%)
Query: 27 DAIKGKKVIIFGVPGAFTP 45
+ V +FG+
Sbjct: 60 KFKRDDHVDVFGLFYILNS 78
>d1k0ha_ b.106.1.2 (A:) Tail attachment protein gpF3 {Bacteriophage
lambda [TaxId: 10710]}
Length = 117
Score = 24.4 bits (53), Expect = 4.6
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 122 SKRYSMVVDDGKITQLNIEPDGTGLT 147
+ ++ + + + PD G
Sbjct: 76 RRGDTLTIGEENFWVDRVSPDDGGSC 101
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 24.5 bits (52), Expect = 5.5
Identities = 5/63 (7%), Positives = 15/63 (23%)
Query: 29 IKGKKVIIFGVPGAFTPGCSVTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 88
G ++++ G GA + E+ + + + +
Sbjct: 16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL 75
Query: 89 NAE 91
Sbjct: 76 EGH 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.426
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,180
Number of extensions: 28963
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 33
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.0 bits)