BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5401
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WFC|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|C Chain C, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
pdb|2WFC|D Chain D, Crystal Structure Of Peroxiredoxin 5 From Arenicola Marina
Length = 167
Score = 118 bits (296), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 78/107 (72%), Gaps = 1/107 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPGY+ + + KG+ I C+AVND+FVM+AW + + A+ K++ LADP FTK +
Sbjct: 49 KTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAV 108
Query: 62 GVEHEI-PVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+E ++ VLG RSKRYS+V++DG +T++N+EPDG GLTCSL +
Sbjct: 109 DMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNI 155
>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
Length = 172
Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 60 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 119
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 120 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 168
>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
pdb|1OC3|B Chain B, Human Peroxiredoxin 5
pdb|1OC3|C Chain C, Human Peroxiredoxin 5
pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 60 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 119
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 120 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 168
>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
Inhibitor
Length = 173
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 61 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 120
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 121 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 169
>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
Length = 161
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/109 (49%), Positives = 73/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 49 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 108
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 109 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 157
>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
Length = 173
Score = 110 bits (276), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + ++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 61 KTHLPGFVEQAEALKAKGVQVVASLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 120
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 121 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 169
>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
Length = 172
Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 60 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 119
Query: 62 GV---EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + + G R KR+SMVV DG + LN+EPDGTGLT SL +
Sbjct: 120 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTXSLAPNI 168
>pdb|2XHF|A Chain A, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
pdb|2XHF|B Chain B, Crystal Structure Of Peroxiredoxin 5 From Alvinella
Pompejana
Length = 171
Score = 100 bits (248), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 63
H+P YL+ K +G H I CIAVND FVM AW + + E KIR LAD + EFT+ LG
Sbjct: 61 HIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGT 120
Query: 64 EHEIP-VLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSL 103
E + +LG RS+RY+M++DD KI ++ EPD TGL C L
Sbjct: 121 ELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEPDITGLACLL 161
>pdb|4F82|A Chain A, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
pdb|4F82|B Chain B, X-Ray Crystal Structure Of A Putative Thioredoxin
Reductase From Burkholderia Cenocepacia
Length = 176
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 63
H+PGY+ + L+A GI EI+C++VNDAFVM AW R + GK+R +AD + FT LG+
Sbjct: 67 HVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGL 126
Query: 64 EHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDG 96
++ G G RS RY+MV+D G + L +E G
Sbjct: 127 TQDLSARGMGIRSLRYAMVIDGGVVKTLAVEAPG 160
>pdb|1TP9|A Chain A, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|B Chain B, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|C Chain C, Prx D (Type Ii) From Populus Tremula
pdb|1TP9|D Chain D, Prx D (Type Ii) From Populus Tremula
Length = 162
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 63
H+PG++ K +LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T LG+
Sbjct: 55 HVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGL 114
Query: 64 EHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDELK 108
E ++ G G RS+R++++VDD K+ NIE G S D LK
Sbjct: 115 ELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSAEDILK 160
>pdb|3UMA|A Chain A, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|B Chain B, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
pdb|3UMA|C Chain C, Crystal Structure Of A Hypothetical Peroxiredoxin Protein
Frm Sinorhizobium Meliloti
Length = 184
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 63
HLPGYL + A+G+ +I +AVND V AW + GKI FL+D N FTK +G
Sbjct: 76 HLPGYLENRDAILARGVDDIAVVAVNDLHVXGAWATHSGGXGKIHFLSDWNAAFTKAIGX 135
Query: 64 EHEIPV-LGGWRSKRYSMVVDDGKITQLNIE 93
E ++ G RSKRYS +V+DG + LNIE
Sbjct: 136 EIDLSAGTLGIRSKRYSXLVEDGVVKALNIE 166
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGV 63
H+P Y KAKG+ + C+A+ND + + AW K A+ I F D + F K L +
Sbjct: 63 HVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLEL 122
Query: 64 EHEIPV-LGGWRSKRYSMVVDDGKITQLNIE 93
++ L G RS+R+S V DGK+ LN+E
Sbjct: 123 TTDLSAGLLGIRSERWSAYVVDGKVKALNVE 153
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 62
+HLP Y K G+ +I ++VND FV AW +E I F+ D N EFT+ G
Sbjct: 52 SHLPRYNELAPVFKKYGVDDILVVSVNDTFVXNAWKEDEKSE-NISFIPDGNGEFTEGXG 110
Query: 63 VEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTG 98
LG G RS RYS +V +G + + IEP+ G
Sbjct: 111 XLVGKEDLGFGKRSWRYSXLVKNGVVEKXFIEPNEPG 147
>pdb|4DSS|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 176
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 3 THLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNLEFTK 59
+H+PGY+ +L K K + ++ + V++ F +AW + + I+F +DP FTK
Sbjct: 65 SHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTK 124
Query: 60 KLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTGLTCSLVDEL 107
+G E + G + S R++MVV++G +T E + GT +T S V+ +
Sbjct: 125 SIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESV 172
>pdb|4DSQ|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSQ|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Oxidized Form
pdb|4DSR|A Chain A, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|C Chain C, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
pdb|4DSR|D Chain D, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Reduced Form
Length = 184
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 3 THLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNLEFTK 59
+H+PGY+ +L K K + ++ + V++ F +AW + + I+F +DP FTK
Sbjct: 73 SHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTK 132
Query: 60 KLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTGLTCSLVDEL 107
+G E + G + S R++MVV++G +T E + GT +T S V+ +
Sbjct: 133 SIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESV 180
>pdb|4H86|A Chain A, Crystal Structure Of Ahp1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 199
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 5/109 (4%)
Query: 3 THLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNLEFTK 59
+H+PGY+ +L K K + ++ + V++ F +AW + + I+F +DP FTK
Sbjct: 88 SHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTK 147
Query: 60 KLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTGLTCSLVDEL 107
+G E + G + S R++MVV++G +T E + GT +T S V+ +
Sbjct: 148 SIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESV 195
>pdb|1XIY|A Chain A, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
pdb|1XIY|B Chain B, Crystal Structure Of Plasmodium Falciparum Antioxidant
Protein (1-Cys Peroxiredoxin)
Length = 182
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 5 LPGYLAKEKD--LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 62
+PGY +E D +K +I+CI ND +V+++W + + + KI++++D N FT +
Sbjct: 64 IPGY-EEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSMN 121
Query: 63 -VEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD 95
+ + G R R+ +V++ + ++ E D
Sbjct: 122 MLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKD 155
>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|B Chain B, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|C Chain C, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|D Chain D, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|E Chain E, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|F Chain F, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|G Chain G, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|H Chain H, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|I Chain I, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|J Chain J, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
Length = 187
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 14 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLG 71
+LK G+ E++ ++ + FV +AW + A G I + + DP+ +++ V +E L
Sbjct: 60 ELKKLGV-EVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGL- 117
Query: 72 GWRSKRYSMVVD-DGKITQLNIEPDGTGLTCS-LVDELK 108
+ R + ++D DG I + I DG G S L++++K
Sbjct: 118 ---ADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK 153
>pdb|1XEZ|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Pro-Toxin With Octylglucoside Bound
Length = 721
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 21 HEIFCIAVNDAFVME------AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74
H F I+VN A E +W KN +G F D N+ ++ +E R
Sbjct: 146 HVAFYISVNRAISDEECTFNNSWLWKNE-KGSRPFCKDANISLIYRVNLE---------R 195
Query: 75 SKRYSMV---VDDGKITQLNIEPDGTGLTCSLVDEL 107
S +Y +V D KI +++++ D TG L D+L
Sbjct: 196 SLQYGIVGSATPDAKIVRISLDDDSTGAGIHLNDQL 231
>pdb|3O44|A Chain A, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|B Chain B, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|C Chain C, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|D Chain D, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|E Chain E, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|F Chain F, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|G Chain G, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|H Chain H, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|I Chain I, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|J Chain J, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|K Chain K, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|L Chain L, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|M Chain M, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
pdb|3O44|N Chain N, Crystal Structure Of The Vibrio Cholerae Cytolysin (Hlya)
Heptameric Pore
Length = 593
Score = 32.7 bits (73), Expect = 0.056, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 21 HEIFCIAVNDAFVME------AWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74
H F I+VN A E +W KN +G F D N+ ++ +E R
Sbjct: 18 HVAFYISVNRAISDEECTFNNSWLWKNE-KGSRPFCKDANISLIYRVNLE---------R 67
Query: 75 SKRYSMV---VDDGKITQLNIEPDGTGLTCSLVDEL 107
S +Y +V D KI +++++ D TG L D+L
Sbjct: 68 SLQYGIVGSATPDAKIVRISLDDDSTGAGIHLNDQL 103
>pdb|2YWN|A Chain A, Crystal Structure Of Peroxiredoxin-Like Protein From
Sulfolobus Tokodaii
pdb|4G2E|A Chain A, Crystal Structure Of A Dimeric Prxq From Sulfolobus
Tokodaii
Length = 157
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 23 IFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGW-RSKRYSMV 81
+ I+V+ F +A+ N I L+D N E KK V E P L G+ +KR V
Sbjct: 67 VLGISVDPPFSNKAFKEHNKLNFTI--LSDYNREVVKKYNVAWEFPALPGYVLAKRAVFV 124
Query: 82 VD-DGKITQLNIEPDGT 97
+D +GK+ + D T
Sbjct: 125 IDKEGKVRYKWVSDDPT 141
>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|F Chain F, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|G Chain G, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|H Chain H, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|I Chain I, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|J Chain J, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79
+++ ++ + FV +AW + KI++ + DP T+ E L + R +
Sbjct: 66 DVYSVSTDTHFVHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGL----ADRAT 121
Query: 80 MVVD-DGKITQLNIEPDGTGLTCS 102
VVD G I + + +G G S
Sbjct: 122 FVVDPQGIIQAIEVTAEGIGRDAS 145
>pdb|2GBW|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBW|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1
pdb|2GBX|A Chain A, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|C Chain C, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
pdb|2GBX|E Chain E, Crystal Structure Of Biphenyl 2,3-Dioxygenase From
Sphingomonas Yanoikuyae B1 Bound To Biphenyl
Length = 454
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 44 EGKIRFLADPNLEFTKKLGVEHEIPVLGGW 73
EG +FL D E +K G E E LG W
Sbjct: 265 EGWTKFLEDTRGEVRRKFGPERERLYLGHW 294
>pdb|1W4R|A Chain A, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|B Chain B, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|C Chain C, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|D Chain D, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|E Chain E, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|F Chain F, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|G Chain G, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
pdb|1W4R|H Chain H, Structure Of A Type Ii Thymidine Kinase With Bound Dttp
Length = 195
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 57 FTKKLGVEHEIPVLGG 72
+TK+LG E E+ V+GG
Sbjct: 163 YTKRLGTEKEVEVIGG 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,613,056
Number of Sequences: 62578
Number of extensions: 137493
Number of successful extensions: 276
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 26
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)