Query psy5401
Match_columns 109
No_of_seqs 129 out of 1048
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 16:33:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0678 AHP1 Peroxiredoxin [Po 100.0 6.7E-40 1.5E-44 230.9 11.4 108 2-109 55-163 (165)
2 KOG0541|consensus 100.0 7.3E-38 1.6E-42 221.7 10.1 108 2-109 61-169 (171)
3 cd03013 PRX5_like Peroxiredoxi 100.0 3.6E-28 7.8E-33 171.6 12.2 106 4-109 49-155 (155)
4 COG0450 AhpC Peroxiredoxin [Po 99.9 2.4E-23 5.3E-28 152.1 8.8 97 2-103 50-152 (194)
5 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.1E-22 4.6E-27 143.5 9.7 87 2-91 47-136 (157)
6 PRK10382 alkyl hydroperoxide r 99.8 1.6E-20 3.4E-25 136.8 8.7 97 2-108 48-149 (187)
7 PTZ00137 2-Cys peroxiredoxin; 99.8 1.5E-19 3.3E-24 137.7 9.9 96 2-108 115-218 (261)
8 PRK13191 putative peroxiredoxi 99.8 3.4E-19 7.3E-24 132.1 8.9 95 2-100 50-149 (215)
9 KOG0852|consensus 99.8 5.4E-19 1.2E-23 127.7 8.5 96 3-103 51-152 (196)
10 PRK15000 peroxidase; Provision 99.8 1.2E-18 2.5E-23 127.9 9.2 95 2-101 51-151 (200)
11 PRK13189 peroxiredoxin; Provis 99.8 2.2E-18 4.8E-23 128.2 8.5 96 2-101 52-152 (222)
12 PRK13599 putative peroxiredoxi 99.8 2.9E-18 6.4E-23 127.2 8.7 94 2-99 45-143 (215)
13 cd03016 PRX_1cys Peroxiredoxin 99.7 6.7E-18 1.4E-22 123.7 8.7 94 2-100 42-142 (203)
14 PRK13190 putative peroxiredoxi 99.7 1.1E-17 2.5E-22 122.5 9.2 97 2-103 44-145 (202)
15 TIGR03137 AhpC peroxiredoxin. 99.7 3.8E-17 8.3E-22 118.2 9.5 92 2-98 48-142 (187)
16 COG2077 Tpx Peroxiredoxin [Pos 99.7 5.6E-17 1.2E-21 114.7 7.1 89 3-96 62-152 (158)
17 cd02971 PRX_family Peroxiredox 99.6 3.9E-15 8.4E-20 100.9 10.6 99 3-108 40-140 (140)
18 PRK00522 tpx lipid hydroperoxi 99.6 2.4E-15 5.2E-20 107.0 9.9 87 2-94 61-150 (167)
19 PTZ00253 tryparedoxin peroxida 99.6 1.5E-15 3.2E-20 110.8 8.0 94 3-101 54-153 (199)
20 cd03014 PRX_Atyp2cys Peroxired 99.6 7E-15 1.5E-19 100.7 9.2 86 2-95 43-130 (143)
21 KOG0855|consensus 99.6 8E-15 1.7E-19 105.9 7.6 78 2-85 107-184 (211)
22 cd03015 PRX_Typ2cys Peroxiredo 99.5 6.2E-14 1.3E-18 99.7 9.1 91 3-98 47-143 (173)
23 cd03018 PRX_AhpE_like Peroxire 99.5 1.7E-13 3.8E-18 94.0 9.3 96 3-105 46-144 (149)
24 cd02970 PRX_like2 Peroxiredoxi 99.5 3.2E-13 7E-18 92.0 9.6 88 3-93 41-148 (149)
25 PRK09437 bcp thioredoxin-depen 99.5 7.8E-13 1.7E-17 91.8 10.0 90 3-95 48-140 (154)
26 cd03017 PRX_BCP Peroxiredoxin 99.5 9.9E-13 2.2E-17 89.2 10.3 88 3-94 41-129 (140)
27 PF00578 AhpC-TSA: AhpC/TSA fa 99.4 2.8E-12 6E-17 85.1 9.4 81 3-90 43-124 (124)
28 PF08534 Redoxin: Redoxin; In 99.3 2E-11 4.2E-16 83.7 7.9 100 3-108 46-146 (146)
29 cd03012 TlpA_like_DipZ_like Tl 99.1 1.7E-10 3.6E-15 77.9 7.2 78 3-93 40-124 (126)
30 KOG0854|consensus 99.0 8.6E-10 1.9E-14 80.6 7.6 100 2-102 49-158 (224)
31 cd00340 GSH_Peroxidase Glutath 99.0 7.7E-10 1.7E-14 77.1 6.1 90 2-94 37-142 (152)
32 cd02968 SCO SCO (an acronym fo 99.0 3.8E-09 8.2E-14 71.6 7.8 86 3-91 40-140 (142)
33 cd02969 PRX_like1 Peroxiredoxi 99.0 5.5E-09 1.2E-13 73.8 8.9 79 3-94 42-129 (171)
34 PLN02412 probable glutathione 98.9 3E-09 6.6E-14 75.6 6.2 89 3-94 46-150 (167)
35 TIGR02540 gpx7 putative glutat 98.9 4.5E-09 9.7E-14 73.2 6.1 89 2-94 38-139 (153)
36 PTZ00256 glutathione peroxidas 98.7 1.6E-08 3.5E-13 72.8 4.4 89 3-94 58-167 (183)
37 PRK15412 thiol:disulfide inter 98.5 9.7E-07 2.1E-11 63.5 9.2 70 12-94 90-162 (185)
38 PTZ00056 glutathione peroxidas 98.5 5.4E-07 1.2E-11 66.0 7.2 85 3-93 56-163 (199)
39 PRK03147 thiol-disulfide oxido 98.5 1.1E-06 2.4E-11 61.4 7.9 78 3-93 78-157 (173)
40 TIGR00385 dsbE periplasmic pro 98.4 4.5E-06 9.8E-11 59.3 9.4 71 10-93 83-156 (173)
41 PLN02399 phospholipid hydroper 98.3 1.7E-06 3.8E-11 65.3 6.7 88 3-93 116-219 (236)
42 cd02966 TlpA_like_family TlpA- 98.3 4.7E-06 1E-10 52.8 7.7 76 3-91 36-114 (116)
43 PF13911 AhpC-TSA_2: AhpC/TSA 98.3 1.8E-05 4E-10 52.5 9.9 83 9-94 3-114 (115)
44 cd03010 TlpA_like_DsbE TlpA-li 98.2 2.9E-05 6.2E-10 51.8 9.2 63 19-93 55-119 (127)
45 cd02967 mauD Methylamine utili 98.0 3E-05 6.4E-10 50.6 7.0 75 3-92 38-113 (114)
46 cd03011 TlpA_like_ScsD_MtbDsbE 97.9 0.00015 3.3E-09 47.8 8.1 59 20-92 49-110 (123)
47 cd03008 TryX_like_RdCVF Trypar 97.8 9.3E-05 2E-09 52.2 6.8 79 3-92 42-130 (146)
48 TIGR02661 MauD methylamine deh 97.8 0.00011 2.4E-09 53.1 7.0 72 3-91 91-163 (189)
49 TIGR01626 ytfJ_HI0045 conserve 97.7 0.00032 7E-09 51.3 8.2 72 11-94 80-166 (184)
50 cd03009 TryX_like_TryX_NRX Try 97.2 0.00076 1.7E-08 45.2 4.5 76 3-91 35-116 (131)
51 PRK10606 btuE putative glutath 97.0 0.0017 3.6E-08 47.3 5.6 51 3-56 41-102 (183)
52 cd02964 TryX_like_family Trypa 97.0 0.0024 5.1E-08 43.1 5.8 78 3-93 34-118 (132)
53 PRK14018 trifunctional thiored 97.0 0.0034 7.4E-08 52.4 7.6 80 3-94 73-159 (521)
54 PF13905 Thioredoxin_8: Thiore 96.7 0.0028 6.1E-08 39.9 4.1 74 3-87 18-95 (95)
55 PLN02919 haloacid dehalogenase 96.5 0.012 2.6E-07 52.7 8.0 78 3-93 437-521 (1057)
56 PRK13728 conjugal transfer pro 94.6 0.11 2.4E-06 38.0 5.6 68 3-93 86-156 (181)
57 PF02630 SCO1-SenC: SCO1/SenC; 93.9 0.29 6.3E-06 34.8 6.6 83 8-91 75-171 (174)
58 PF05988 DUF899: Bacterial pro 92.8 1.7 3.6E-05 32.6 9.2 78 10-93 97-174 (211)
59 COG2179 Predicted hydrolase of 89.2 1.4 3.1E-05 32.1 5.7 39 5-44 48-86 (175)
60 cd01427 HAD_like Haloacid deha 88.4 1.4 3.1E-05 27.8 4.9 38 5-43 26-63 (139)
61 PF00837 T4_deiodinase: Iodoth 81.8 1.3 2.7E-05 33.8 2.5 49 47-107 183-232 (237)
62 PF09695 YtfJ_HI0045: Bacteria 81.7 2.1 4.6E-05 30.8 3.4 36 48-92 106-142 (160)
63 cd05017 SIS_PGI_PMI_1 The memb 80.5 6.2 0.00013 25.9 5.2 48 4-55 55-102 (119)
64 COG1999 Uncharacterized protei 79.0 23 0.00049 26.0 8.3 87 6-93 88-189 (207)
65 TIGR01488 HAD-SF-IB Haloacid D 79.0 7.1 0.00015 26.6 5.4 51 6-57 76-128 (177)
66 TIGR01491 HAD-SF-IB-PSPlk HAD- 78.6 11 0.00024 26.1 6.4 39 5-44 82-120 (201)
67 PF12710 HAD: haloacid dehalog 76.9 4.3 9.2E-05 28.0 3.8 39 6-45 88-130 (192)
68 TIGR01490 HAD-SF-IB-hyp1 HAD-s 75.7 11 0.00024 26.4 5.8 40 5-45 89-128 (202)
69 PRK00366 ispG 4-hydroxy-3-meth 75.4 8 0.00017 31.3 5.3 54 3-58 39-94 (360)
70 PF00702 Hydrolase: haloacid d 74.9 6.8 0.00015 27.3 4.4 58 5-64 129-194 (215)
71 TIGR00338 serB phosphoserine p 73.6 9 0.0002 27.3 4.9 39 5-44 87-125 (219)
72 PF05176 ATP-synt_10: ATP10 pr 72.0 7.5 0.00016 29.7 4.3 80 4-93 138-235 (252)
73 TIGR02738 TrbB type-F conjugat 71.7 13 0.00028 26.1 5.1 25 3-31 67-91 (153)
74 TIGR01662 HAD-SF-IIIA HAD-supe 71.4 19 0.00041 23.6 5.7 39 5-44 27-73 (132)
75 TIGR00612 ispG_gcpE 1-hydroxy- 71.0 11 0.00024 30.3 5.1 51 3-55 31-81 (346)
76 TIGR01449 PGP_bact 2-phosphogl 68.4 14 0.00031 25.9 4.9 40 5-45 87-126 (213)
77 PF04273 DUF442: Putative phos 67.8 8.1 0.00018 25.8 3.3 43 10-52 18-68 (110)
78 PRK13222 phosphoglycolate phos 66.7 25 0.00053 24.9 5.9 43 4-47 94-136 (226)
79 COG0821 gcpE 1-hydroxy-2-methy 65.4 15 0.00033 29.6 4.9 52 5-58 35-88 (361)
80 PF13419 HAD_2: Haloacid dehal 64.4 20 0.00044 23.6 4.8 39 5-44 79-117 (176)
81 COG3769 Predicted hydrolase (H 63.5 18 0.00038 27.9 4.7 45 11-57 31-75 (274)
82 TIGR01668 YqeG_hyp_ppase HAD s 62.1 26 0.00056 24.5 5.2 38 5-43 45-83 (170)
83 TIGR03333 salvage_mtnX 2-hydro 61.6 35 0.00075 24.5 5.9 39 4-43 71-109 (214)
84 TIGR01428 HAD_type_II 2-haloal 61.1 25 0.00054 24.6 5.0 47 5-52 94-142 (198)
85 PF04551 GcpE: GcpE protein; 59.6 21 0.00046 28.8 4.8 52 4-58 29-88 (359)
86 TIGR03765 ICE_PFL_4695 integra 58.3 48 0.001 22.3 5.6 53 8-64 40-92 (105)
87 TIGR01489 DKMTPPase-SF 2,3-dik 58.1 37 0.00079 23.1 5.3 40 5-45 74-113 (188)
88 PLN02954 phosphoserine phospha 57.6 27 0.00059 24.8 4.7 39 5-44 86-124 (224)
89 PRK13288 pyrophosphatase PpaX; 56.8 45 0.00097 23.6 5.8 40 5-45 84-123 (214)
90 TIGR02463 MPGP_rel mannosyl-3- 56.4 50 0.0011 23.5 6.0 39 5-44 18-56 (221)
91 PRK13225 phosphoglycolate phos 56.2 42 0.00091 25.5 5.8 44 5-49 144-187 (273)
92 PF13344 Hydrolase_6: Haloacid 55.6 18 0.00039 23.3 3.2 38 3-41 14-51 (101)
93 PF09048 Cro: Cro; InterPro: 54.7 11 0.00024 22.8 1.9 41 54-96 15-58 (59)
94 PF11072 DUF2859: Protein of u 54.6 61 0.0013 22.8 5.9 53 8-64 78-130 (142)
95 TIGR02253 CTE7 HAD superfamily 53.5 34 0.00074 24.2 4.7 40 5-45 96-135 (221)
96 PF08750 CNP1: CNP1-like famil 53.5 13 0.00028 26.1 2.4 25 83-107 48-72 (139)
97 COG3054 Predicted transcriptio 52.3 29 0.00062 25.2 4.0 35 47-91 127-163 (184)
98 PRK10826 2-deoxyglucose-6-phos 52.1 45 0.00097 23.8 5.1 40 5-45 94-133 (222)
99 cd03769 SR_IS607_transposase_l 50.6 47 0.001 22.4 4.8 47 5-53 48-99 (134)
100 TIGR01681 HAD-SF-IIIC HAD-supe 50.0 52 0.0011 21.8 4.9 37 5-42 31-68 (128)
101 COG0546 Gph Predicted phosphat 49.3 65 0.0014 23.3 5.7 42 3-45 89-130 (220)
102 PF13704 Glyco_tranf_2_4: Glyc 49.3 31 0.00066 21.3 3.5 36 5-43 7-42 (97)
103 PHA02762 hypothetical protein; 48.3 14 0.0003 22.1 1.6 17 80-96 32-49 (62)
104 PRK11033 zntA zinc/cadmium/mer 47.2 29 0.00062 30.3 4.0 38 6-44 571-608 (741)
105 TIGR01509 HAD-SF-IA-v3 haloaci 45.8 60 0.0013 21.8 4.8 39 5-45 87-125 (183)
106 PRK09552 mtnX 2-hydroxy-3-keto 45.7 47 0.001 23.9 4.4 36 5-41 76-111 (219)
107 TIGR01545 YfhB_g-proteo haloac 45.7 75 0.0016 23.1 5.5 38 5-43 96-134 (210)
108 PRK13226 phosphoglycolate phos 45.3 65 0.0014 23.3 5.1 42 5-47 97-138 (229)
109 PF13773 DUF4170: Domain of un 44.9 19 0.00041 22.5 1.8 30 13-42 18-47 (69)
110 PRK08674 bifunctional phosphog 44.5 87 0.0019 24.3 6.0 51 4-58 90-140 (337)
111 TIGR01549 HAD-SF-IA-v1 haloaci 44.1 58 0.0013 21.6 4.5 37 4-41 65-101 (154)
112 TIGR03351 PhnX-like phosphonat 43.7 63 0.0014 22.8 4.8 39 5-44 89-127 (220)
113 TIGR01511 ATPase-IB1_Cu copper 43.4 56 0.0012 27.5 5.0 38 6-44 408-445 (562)
114 cd03423 SirA SirA (also known 42.8 72 0.0016 18.9 4.4 37 8-44 13-52 (69)
115 cd03412 CbiK_N Anaerobic cobal 42.6 36 0.00078 22.9 3.2 26 3-28 53-78 (127)
116 PRK10200 putative racemase; Pr 42.5 57 0.0012 24.2 4.5 31 4-35 60-90 (230)
117 PLN02770 haloacid dehalogenase 42.5 71 0.0015 23.5 5.1 47 5-52 110-158 (248)
118 TIGR01454 AHBA_synth_RP 3-amin 42.2 88 0.0019 21.9 5.3 40 5-45 77-116 (205)
119 PF01136 Peptidase_U32: Peptid 42.2 78 0.0017 22.9 5.2 47 5-57 1-47 (233)
120 TIGR00067 glut_race glutamate 42.0 38 0.00082 25.5 3.5 26 6-32 47-73 (251)
121 PRK14988 GMP/IMP nucleotidase; 41.9 72 0.0016 23.1 5.0 47 5-52 95-143 (224)
122 cd03420 SirA_RHOD_Pry_redox Si 41.3 77 0.0017 18.8 4.7 36 9-44 14-52 (69)
123 cd03409 Chelatase_Class_II Cla 41.1 37 0.0008 21.0 2.9 24 5-28 44-67 (101)
124 PF01206 TusA: Sulfurtransfera 41.1 58 0.0013 19.1 3.7 42 9-52 15-59 (70)
125 TIGR01670 YrbI-phosphatas 3-de 41.1 67 0.0014 22.0 4.4 33 11-44 36-68 (154)
126 TIGR01497 kdpB K+-transporting 40.1 69 0.0015 28.0 5.2 38 6-44 449-486 (675)
127 KOG2944|consensus 40.1 64 0.0014 23.4 4.2 24 19-43 115-138 (170)
128 TIGR01512 ATPase-IB2_Cd heavy 38.8 71 0.0015 26.6 4.9 57 6-62 365-422 (536)
129 PF11720 Inhibitor_I78: Peptid 38.1 31 0.00067 20.4 2.0 18 74-91 40-58 (60)
130 PF00989 PAS: PAS fold; Inter 37.8 33 0.00072 20.6 2.3 15 78-92 13-28 (113)
131 KOG4498|consensus 37.8 1.1E+02 0.0025 22.7 5.3 88 8-98 73-183 (197)
132 TIGR00035 asp_race aspartate r 37.4 71 0.0015 23.4 4.3 53 5-62 61-116 (229)
133 TIGR01422 phosphonatase phosph 36.9 73 0.0016 23.2 4.3 40 5-45 101-140 (253)
134 PLN02367 lactoylglutathione ly 36.7 1.9E+02 0.0041 22.0 7.2 52 18-91 168-220 (233)
135 PRK13478 phosphonoacetaldehyde 36.3 81 0.0017 23.3 4.5 38 5-43 103-140 (267)
136 COG1794 RacX Aspartate racemas 36.1 80 0.0017 24.1 4.4 52 8-64 64-118 (230)
137 cd03411 Ferrochelatase_N Ferro 35.7 48 0.001 23.0 3.0 23 6-28 99-121 (159)
138 PRK02048 4-hydroxy-3-methylbut 35.7 1.3E+02 0.0027 26.3 5.9 53 3-58 38-98 (611)
139 TIGR01647 ATPase-IIIA_H plasma 35.6 83 0.0018 27.5 5.0 38 7-45 446-483 (755)
140 PF06971 Put_DNA-bind_N: Putat 35.4 44 0.00094 19.3 2.3 18 4-21 10-27 (50)
141 TIGR02740 TraF-like TraF-like 35.2 2E+02 0.0044 21.9 6.7 51 19-92 196-248 (271)
142 cd05014 SIS_Kpsf KpsF-like pro 35.1 76 0.0016 20.4 3.8 40 22-63 50-94 (128)
143 PLN03243 haloacid dehalogenase 34.8 97 0.0021 23.3 4.8 47 5-52 111-159 (260)
144 PRK01122 potassium-transportin 34.8 87 0.0019 27.4 5.0 38 6-44 448-485 (679)
145 TIGR01452 PGP_euk phosphoglyco 34.5 47 0.001 25.0 3.0 30 4-34 19-48 (279)
146 PF13686 DrsE_2: DsrE/DsrF/Drs 34.3 31 0.00067 24.1 1.9 25 3-28 88-112 (148)
147 TIGR01691 enolase-ppase 2,3-di 34.3 98 0.0021 22.9 4.6 36 5-41 97-132 (220)
148 PF09419 PGP_phosphatase: Mito 34.2 1.3E+02 0.0028 21.6 5.1 38 6-43 62-107 (168)
149 PF08448 PAS_4: PAS fold; Int 34.2 49 0.0011 19.7 2.6 16 78-93 7-23 (110)
150 TIGR03642 cas_csx13 CRISPR-ass 34.2 56 0.0012 22.4 3.1 22 19-40 20-41 (124)
151 TIGR01686 FkbH FkbH-like domai 34.1 1.3E+02 0.0029 23.1 5.6 36 4-40 32-67 (320)
152 TIGR01689 EcbF-BcbF capsule bi 34.1 1.3E+02 0.0027 20.5 4.8 38 6-44 27-79 (126)
153 PF04025 DUF370: Domain of unk 33.5 68 0.0015 20.1 3.1 34 58-94 33-66 (73)
154 TIGR00213 GmhB_yaeD D,D-heptos 33.3 59 0.0013 22.5 3.2 26 5-31 28-53 (176)
155 PHA03398 viral phosphatase sup 33.1 1.7E+02 0.0038 23.1 6.0 41 6-47 151-191 (303)
156 TIGR01685 MDP-1 magnesium-depe 32.9 1.5E+02 0.0033 21.1 5.3 39 5-44 47-86 (174)
157 KOG1346|consensus 32.1 59 0.0013 27.7 3.4 70 1-74 387-469 (659)
158 COG1433 Uncharacterized conser 31.5 74 0.0016 21.7 3.3 26 69-96 19-45 (121)
159 PRK13223 phosphoglycolate phos 31.0 1.3E+02 0.0029 22.5 5.0 39 5-44 103-141 (272)
160 PF03544 TonB_C: Gram-negative 30.8 1E+02 0.0022 18.0 3.6 19 77-95 19-38 (79)
161 COG2217 ZntA Cation transport 30.7 98 0.0021 27.3 4.7 66 8-86 542-609 (713)
162 PRK11590 hypothetical protein; 30.7 1.9E+02 0.0041 20.6 5.6 38 5-43 97-135 (211)
163 PF07762 DUF1618: Protein of u 30.4 77 0.0017 20.9 3.3 21 74-95 43-63 (131)
164 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.3 99 0.0021 19.8 3.8 38 23-62 50-92 (126)
165 TIGR01533 lipo_e_P4 5'-nucleot 30.1 1.1E+02 0.0025 23.4 4.5 40 4-44 119-161 (266)
166 TIGR01459 HAD-SF-IIA-hyp4 HAD- 30.1 1.3E+02 0.0029 21.9 4.8 41 4-45 25-67 (242)
167 TIGR01525 ATPase-IB_hvy heavy 30.0 1.3E+02 0.0028 25.1 5.2 39 5-44 386-425 (556)
168 TIGR02009 PGMB-YQAB-SF beta-ph 29.9 1.3E+02 0.0028 20.4 4.4 37 5-44 90-126 (185)
169 COG3322 Predicted periplasmic 29.8 44 0.00096 26.3 2.2 50 47-101 79-130 (295)
170 cd03052 GST_N_GDAP1 GST_N fami 29.8 38 0.00082 20.2 1.5 40 14-53 18-58 (73)
171 COG2052 Uncharacterized protei 29.6 74 0.0016 20.4 2.8 33 58-94 37-70 (89)
172 PRK11133 serB phosphoserine ph 29.4 1.3E+02 0.0029 23.5 4.9 39 5-44 183-221 (322)
173 TIGR02252 DREG-2 REG-2-like, H 29.3 1.3E+02 0.0029 20.8 4.5 38 5-44 107-144 (203)
174 cd08612 GDPD_GDE4 Glycerophosp 29.1 1.8E+02 0.004 22.2 5.5 44 10-58 252-295 (300)
175 TIGR00067 glut_race glutamate 29.0 1.6E+02 0.0034 22.2 5.1 51 8-61 161-211 (251)
176 TIGR01544 HAD-SF-IE haloacid d 29.0 2.1E+02 0.0046 22.2 5.9 38 5-43 123-160 (277)
177 PRK09456 ?-D-glucose-1-phospha 28.9 1.2E+02 0.0026 21.2 4.3 34 5-39 86-119 (199)
178 COG2093 DNA-directed RNA polym 28.8 1.1E+02 0.0024 18.7 3.4 27 47-82 36-63 (64)
179 PRK00865 glutamate racemase; P 28.8 1.4E+02 0.0031 22.4 4.9 51 8-61 166-216 (261)
180 TIGR01457 HAD-SF-IIA-hyp2 HAD- 28.7 1.7E+02 0.0038 21.6 5.3 40 4-44 18-60 (249)
181 PRK11587 putative phosphatase; 28.7 1.1E+02 0.0025 21.7 4.1 38 5-43 85-122 (218)
182 TIGR01524 ATPase-IIIB_Mg magne 28.3 1.3E+02 0.0028 26.8 5.1 37 7-44 519-555 (867)
183 COG4312 Uncharacterized protei 28.3 1.5E+02 0.0033 22.7 4.8 52 12-66 105-156 (247)
184 TIGR01664 DNA-3'-Pase DNA 3'-p 28.1 1.5E+02 0.0032 20.7 4.6 38 6-44 45-94 (166)
185 COG4087 Soluble P-type ATPase 28.1 2.2E+02 0.0048 20.3 5.3 52 5-60 32-83 (152)
186 COG1709 Predicted transcriptio 28.1 65 0.0014 24.6 2.8 21 23-43 21-41 (241)
187 PLN02925 4-hydroxy-3-methylbut 28.0 1.4E+02 0.0031 26.5 5.1 52 4-58 108-167 (733)
188 PF13128 DUF3954: Protein of u 27.7 82 0.0018 18.4 2.6 13 78-90 11-23 (50)
189 TIGR01656 Histidinol-ppas hist 27.6 82 0.0018 21.1 3.1 25 5-30 29-53 (147)
190 TIGR02461 osmo_MPG_phos mannos 27.4 2.5E+02 0.0053 20.5 6.2 40 4-44 16-55 (225)
191 COG4081 Uncharacterized protei 27.4 1.4E+02 0.003 21.1 4.1 70 4-90 17-90 (148)
192 TIGR01485 SPP_plant-cyano sucr 27.2 2.4E+02 0.0052 20.5 5.7 39 5-44 23-61 (249)
193 PRK06769 hypothetical protein; 27.2 86 0.0019 21.9 3.2 26 5-31 30-55 (173)
194 PF10055 DUF2292: Uncharacteri 27.1 98 0.0021 16.9 2.7 17 77-93 17-33 (38)
195 PRK15122 magnesium-transportin 27.0 1.4E+02 0.003 26.9 5.0 38 6-44 553-590 (903)
196 TIGR01352 tonB_Cterm TonB fami 26.6 1.2E+02 0.0026 17.4 3.4 20 76-95 12-32 (74)
197 PF14572 Pribosyl_synth: Phosp 26.5 57 0.0012 24.0 2.2 46 7-52 98-143 (184)
198 PLN02575 haloacid dehalogenase 26.1 1.7E+02 0.0037 23.8 5.0 41 4-45 217-257 (381)
199 cd02985 TRX_CDSP32 TRX family, 26.1 1.7E+02 0.0038 18.3 5.3 29 56-94 62-90 (103)
200 PF03749 SfsA: Sugar fermentat 25.8 92 0.002 23.2 3.3 24 4-28 178-202 (215)
201 PF00255 GSHPx: Glutathione pe 25.6 70 0.0015 21.2 2.4 26 4-30 38-63 (108)
202 PRK08351 DNA-directed RNA poly 25.3 1.5E+02 0.0033 17.9 3.6 20 47-66 33-53 (61)
203 PF01380 SIS: SIS domain SIS d 25.2 1.5E+02 0.0033 18.7 4.0 27 4-31 65-91 (131)
204 COG1011 Predicted hydrolase (H 25.1 2.3E+02 0.0049 19.8 5.1 50 4-55 100-151 (229)
205 TIGR01675 plant-AP plant acid 25.0 2.4E+02 0.0051 21.3 5.4 40 5-45 122-164 (229)
206 TIGR01684 viral_ppase viral ph 24.9 3.1E+02 0.0067 21.7 6.1 39 6-45 149-187 (301)
207 PRK10517 magnesium-transportin 24.8 1.6E+02 0.0035 26.4 5.1 37 7-44 554-590 (902)
208 TIGR01522 ATPase-IIA2_Ca golgi 24.8 1.6E+02 0.0035 26.2 5.0 38 6-44 531-568 (884)
209 cd03416 CbiX_SirB_N Sirohydroc 24.6 1E+02 0.0022 19.3 2.9 12 7-18 17-28 (101)
210 PRK14010 potassium-transportin 24.5 1.7E+02 0.0038 25.5 5.1 38 6-44 444-481 (673)
211 COG0560 SerB Phosphoserine pho 24.5 1.9E+02 0.004 21.2 4.7 40 5-45 79-118 (212)
212 cd08162 MPP_PhoA_N Synechococc 24.2 97 0.0021 24.1 3.3 22 8-29 196-217 (313)
213 cd02646 R3H_G-patch R3H domain 24.2 67 0.0015 18.6 1.9 25 55-82 33-57 (58)
214 PF01123 Stap_Strp_toxin: Stap 24.2 37 0.0008 21.8 0.8 18 10-28 48-65 (87)
215 cd05013 SIS_RpiR RpiR-like pro 24.2 1.4E+02 0.0031 18.9 3.6 14 47-60 90-104 (139)
216 cd08576 GDPD_like_SMaseD_PLD G 24.1 2E+02 0.0043 22.3 4.9 17 22-38 211-227 (265)
217 COG0386 BtuE Glutathione perox 24.0 86 0.0019 22.6 2.7 89 2-93 40-145 (162)
218 cd07409 MPP_CD73_N CD73 ecto-5 23.8 1.8E+02 0.0038 22.0 4.5 36 6-41 169-204 (281)
219 PRK00694 4-hydroxy-3-methylbut 23.7 1.8E+02 0.0039 25.3 4.9 52 4-58 43-102 (606)
220 PF07824 Chaperone_III: Type I 23.7 1.4E+02 0.0029 20.3 3.4 37 56-100 6-42 (112)
221 PF02743 Cache_1: Cache domain 23.6 52 0.0011 19.7 1.3 13 77-89 54-67 (81)
222 cd00291 SirA_YedF_YeeD SirA, Y 23.6 1.6E+02 0.0034 16.9 5.3 37 8-44 13-52 (69)
223 cd07245 Glo_EDI_BRP_like_9 Thi 23.4 1.3E+02 0.0029 17.7 3.3 22 22-43 66-87 (114)
224 PF00762 Ferrochelatase: Ferro 23.4 93 0.002 24.3 3.0 56 6-61 100-167 (316)
225 PF10622 Ehbp: Energy-converti 23.2 54 0.0012 20.7 1.3 31 3-34 35-66 (78)
226 TIGR01486 HAD-SF-IIB-MPGP mann 23.2 3E+02 0.0066 20.0 5.8 39 5-44 18-56 (256)
227 cd00419 Ferrochelatase_C Ferro 23.2 97 0.0021 21.1 2.8 21 6-26 77-97 (135)
228 PF05932 CesT: Tir chaperone p 23.1 2E+02 0.0042 17.8 5.6 39 56-100 5-44 (119)
229 TIGR00230 sfsA sugar fermentat 23.1 98 0.0021 23.4 3.0 25 4-29 190-215 (232)
230 PF11009 DUF2847: Protein of u 23.0 1.4E+02 0.0031 19.8 3.5 61 22-91 23-94 (105)
231 PRK13582 thrH phosphoserine ph 23.0 2E+02 0.0044 19.9 4.5 38 5-44 70-107 (205)
232 PRK10671 copA copper exporting 22.8 1.9E+02 0.0041 25.5 5.1 38 6-44 653-690 (834)
233 smart00577 CPDc catalytic doma 22.8 2.5E+02 0.0054 18.9 5.9 38 5-44 47-84 (148)
234 cd04795 SIS SIS domain. SIS (S 22.7 1.6E+02 0.0035 17.2 3.5 20 7-27 62-81 (87)
235 PF03033 Glyco_transf_28: Glyc 22.5 1.5E+02 0.0033 19.0 3.6 44 3-52 10-53 (139)
236 COG0637 Predicted phosphatase/ 22.5 1.6E+02 0.0036 21.3 4.0 45 3-48 86-130 (221)
237 TIGR01523 ATPase-IID_K-Na pota 22.4 1.9E+02 0.0041 26.6 5.1 37 7-44 650-686 (1053)
238 cd07262 Glo_EDI_BRP_like_19 Th 22.4 2.1E+02 0.0045 17.8 5.0 20 22-41 66-85 (123)
239 PF14061 Mtf2_C: Polycomb-like 22.4 1E+02 0.0022 18.0 2.3 16 73-91 28-43 (50)
240 TIGR01261 hisB_Nterm histidino 22.3 1.2E+02 0.0026 21.1 3.2 25 5-30 31-55 (161)
241 cd03414 CbiX_SirB_C Sirohydroc 22.2 1.3E+02 0.0028 19.2 3.2 22 5-26 44-65 (117)
242 PF13653 GDPD_2: Glycerophosph 22.0 81 0.0018 16.3 1.7 19 10-31 11-29 (30)
243 cd06337 PBP1_ABC_ligand_bindin 22.0 3.7E+02 0.0079 20.5 6.3 56 6-62 190-249 (357)
244 PF06888 Put_Phosphatase: Puta 21.9 2E+02 0.0044 21.6 4.5 39 6-45 74-114 (234)
245 PF00875 DNA_photolyase: DNA p 21.9 1.7E+02 0.0037 19.9 3.9 45 7-53 54-98 (165)
246 PRK11320 prpB 2-methylisocitra 21.8 2.3E+02 0.0049 22.1 4.8 39 5-43 165-203 (292)
247 COG0647 NagD Predicted sugar p 21.7 1.2E+02 0.0026 23.4 3.3 38 3-41 24-61 (269)
248 cd01247 PH_GPBP Goodpasture an 21.7 1.1E+02 0.0024 19.3 2.6 20 74-94 15-34 (91)
249 cd06323 PBP1_ribose_binding Pe 21.7 2.3E+02 0.0049 20.0 4.6 32 8-39 44-75 (268)
250 PRK09259 putative oxalyl-CoA d 21.6 2.1E+02 0.0045 23.9 4.9 32 1-32 3-37 (569)
251 TIGR02247 HAD-1A3-hyp Epoxide 21.4 1.4E+02 0.003 20.9 3.4 27 5-32 96-122 (211)
252 cd05710 SIS_1 A subgroup of th 21.3 1.9E+02 0.0041 18.8 3.8 40 22-63 50-94 (120)
253 PF03193 DUF258: Protein of un 21.2 2.2E+02 0.0047 20.2 4.3 33 10-43 3-35 (161)
254 PF14864 Alkyl_sulf_C: Alkyl s 21.2 1.9E+02 0.0041 19.1 3.9 28 76-103 45-73 (125)
255 cd02072 Glm_B12_BD B12 binding 21.2 95 0.0021 21.3 2.4 20 1-20 60-79 (128)
256 cd01011 nicotinamidase Nicotin 21.1 2.3E+02 0.005 20.1 4.5 48 10-59 128-178 (196)
257 PF02645 DegV: Uncharacterised 21.1 1.4E+02 0.0031 22.5 3.5 26 7-32 67-92 (280)
258 PF12244 DUF3606: Protein of u 21.0 82 0.0018 18.4 1.8 20 25-44 14-33 (57)
259 KOG3559|consensus 20.9 99 0.0022 26.0 2.8 17 77-93 90-107 (598)
260 PRK07475 hypothetical protein; 20.9 82 0.0018 23.6 2.2 26 4-30 63-88 (245)
261 PRK12435 ferrochelatase; Provi 20.8 1.1E+02 0.0025 23.8 3.0 23 6-28 90-112 (311)
262 cd03061 GST_N_CLIC GST_N famil 20.7 1.2E+02 0.0026 19.4 2.7 10 29-38 21-30 (91)
263 PRK08942 D,D-heptose 1,7-bisph 20.6 1.4E+02 0.003 20.7 3.2 25 5-30 31-55 (181)
264 PRK00035 hemH ferrochelatase; 20.6 1.2E+02 0.0025 23.6 3.0 27 6-32 105-131 (333)
265 cd03050 GST_N_Theta GST_N fami 20.5 73 0.0016 18.6 1.5 7 46-52 51-57 (76)
266 PF03767 Acid_phosphat_B: HAD 20.5 1.1E+02 0.0023 22.7 2.7 50 4-54 116-170 (229)
267 PRK00192 mannosyl-3-phosphogly 20.4 3.5E+02 0.0076 20.0 5.5 39 5-44 23-61 (273)
268 KOG1448|consensus 20.1 1.1E+02 0.0024 24.4 2.8 36 7-42 229-264 (316)
269 TIGR01116 ATPase-IIA1_Ca sarco 20.1 2.3E+02 0.005 25.4 5.1 38 6-44 540-577 (917)
No 1
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-40 Score=230.93 Aligned_cols=108 Identities=49% Similarity=0.855 Sum_probs=103.5
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~f 80 (109)
++|||+|++++++|+++|||+|+|||+||+|||+||++.++..++|.||+|++++|+|++|++.+.+.+| |.||+||++
T Consensus 55 ~~hlPgY~~~~d~f~~kGVD~I~cVSVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsm 134 (165)
T COG0678 55 SSHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSM 134 (165)
T ss_pred cccCccHHHHHHHHHHcCCceEEEEEeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeecccCCcceeeeeEEE
Confidence 4699999999999999999999999999999999999999998789999999999999999999987777 899999999
Q ss_pred EEeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 81 VVDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 81 iVddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
||+||+|+++++|++++++++|+||+||+
T Consensus 135 vV~nGvV~~~~iE~p~~~~~vS~a~~mL~ 163 (165)
T COG0678 135 VVENGVVEKLFIEPPGDPFTVSSADTMLA 163 (165)
T ss_pred EEeCCeEEEEEecCCCCceeecCHHHHHh
Confidence 99999999999999888899999999985
No 2
>KOG0541|consensus
Probab=100.00 E-value=7.3e-38 Score=221.68 Aligned_cols=108 Identities=44% Similarity=0.842 Sum_probs=102.6
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccC-CceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVL-GGWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~-Gg~r~~R~~f 80 (109)
++|+|+|+++++||+++|||+|+|+|+||||+++||++.++.++.+.|++|++|+|++++|++.|.... +|.||+||++
T Consensus 61 ~~HvPGyi~~a~elksKGVd~iicvSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~ 140 (171)
T KOG0541|consen 61 SSHVPGYIEKADELKSKGVDEIICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYAL 140 (171)
T ss_pred cccCchHHHHHHHHHhcCCcEEEEEecCcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeeccccCccccccEEE
Confidence 589999999999999999999999999999999999999999888999999999999999999997543 3899999999
Q ss_pred EEeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 81 VVDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 81 iVddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
+++||+|+++++|++++++++|+||.||+
T Consensus 141 vvengkV~~~nvE~~g~~~t~ssa~~il~ 169 (171)
T KOG0541|consen 141 VVENGKVTVVNVEEGGTDFTVSSAEDILK 169 (171)
T ss_pred EEeCCeEEEEEeccCCCceEEecHHHHhh
Confidence 99999999999999999999999999985
No 3
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.96 E-value=3.6e-28 Score=171.63 Aligned_cols=106 Identities=48% Similarity=0.838 Sum_probs=95.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~fiV 82 (109)
|+|.|.+++++|+++|+++|+|||+|++|+|++|++++++..+|+||||++++++++||+..+....| +.+++|++|||
T Consensus 49 ~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiI 128 (155)
T cd03013 49 HLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIV 128 (155)
T ss_pred HHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEE
Confidence 49999999999999999569999999999999999999983239999999999999999986643123 34689999999
Q ss_pred eCCeEEEEEEecCCCceeeeccccccC
Q psy5401 83 DDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 83 ddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
|+|+|+|++++..+.++++|++++||+
T Consensus 129 d~g~I~~~~~~~~~~~~~~~~~~~~~~ 155 (155)
T cd03013 129 DDGKVKYLFVEEDPGDVEVSSAENVLK 155 (155)
T ss_pred CCCEEEEEEEecCCCCccccCHHHhcC
Confidence 999999999999999999999999986
No 4
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-23 Score=152.08 Aligned_cols=97 Identities=23% Similarity=0.457 Sum_probs=84.9
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh----cCCCC-ceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK----NNAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~----~~~~~-~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.+||..|.++|++|+++|+ +||++|+|+.|+|+||.+. .++.+ ++||+||++++++++||+..+.. | .+-
T Consensus 50 pTEi~af~~~y~eF~~~g~-eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~--g--~a~ 124 (194)
T COG0450 50 PTEIIAFAKRYEEFQKRGV-EVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE--G--LAL 124 (194)
T ss_pred cchHHHHHhhhHHHHHcCC-EEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC--C--cce
Confidence 4789999999999999999 6999999999999999987 45432 48999999999999999987642 3 488
Q ss_pred EEEEEEe-CCeEEEEEEecCCCceeeec
Q psy5401 77 RYSMVVD-DGKITQLNIEPDGTGLTCSL 103 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~~~~~~~~s~ 103 (109)
|++|||| +|+|+++.+.+.+.+++++.
T Consensus 125 R~~FIIDp~g~ir~~~v~~~~iGRn~dE 152 (194)
T COG0450 125 RGTFIIDPDGVIRHILVNPLTIGRNVDE 152 (194)
T ss_pred eEEEEECCCCeEEEEEEecCCCCcCHHH
Confidence 9999999 99999999999888877643
No 5
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.1e-22 Score=143.47 Aligned_cols=87 Identities=21% Similarity=0.272 Sum_probs=79.5
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC--ceeEeEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG--GWRSKRYS 79 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G--g~r~~R~~ 79 (109)
++|.|+|++++++|+++|+ +|+|||+|++..|++|++++++. |+||||++++++++||+..+....| ...+.|.+
T Consensus 47 T~Ea~~Frd~~~ef~~~~a-~V~GIS~Ds~~~~~~F~~k~~L~--f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~T 123 (157)
T COG1225 47 TTEACDFRDLLEEFEKLGA-VVLGISPDSPKSHKKFAEKHGLT--FPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERST 123 (157)
T ss_pred hHHHHHHHHHHHHHHhCCC-EEEEEeCCCHHHHHHHHHHhCCC--ceeeECCcHHHHHHhCcccccccCccccccccceE
Confidence 5789999999999999999 79999999999999999999997 9999999999999999988754333 23589999
Q ss_pred EEEe-CCeEEEEE
Q psy5401 80 MVVD-DGKITQLN 91 (109)
Q Consensus 80 fiVd-dG~V~~~~ 91 (109)
|||| ||+|++++
T Consensus 124 fvId~dG~I~~~~ 136 (157)
T COG1225 124 FVIDPDGKIRYVW 136 (157)
T ss_pred EEECCCCeEEEEe
Confidence 9999 99999999
No 6
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.83 E-value=1.6e-20 Score=136.84 Aligned_cols=97 Identities=23% Similarity=0.443 Sum_probs=81.8
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
++|+|.|.+.+++|+++|+ +|+|||+|+++.|++|++.. ++ +|++|||++++++++||+..+. .| .+.|
T Consensus 48 ~~el~~l~~~~~~f~~~g~-~vigIS~D~~~~~~a~~~~~~~~~~l--~fpllsD~~~~ia~~ygv~~~~--~g--~~~r 120 (187)
T PRK10382 48 PTELGDVADHYEELQKLGV-DVYSVSTDTHFTHKAWHSSSETIAKI--KYAMIGDPTGALTRNFDNMRED--EG--LADR 120 (187)
T ss_pred HHHHHHHHHHHHHHHhCCC-EEEEEeCCCHHHHHHHHHhhccccCC--ceeEEEcCchHHHHHcCCCccc--CC--ceee
Confidence 4689999999999999999 69999999999999999875 33 3899999999999999997543 23 5789
Q ss_pred EEEEEe-CCeEEEEEEecCCCceeeecccccc
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 108 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~~s~a~~vl 108 (109)
++|||| +|+|+|+++.+.+.+. +++++|
T Consensus 121 ~tfIID~~G~I~~~~~~~~~~~~---~~~eil 149 (187)
T PRK10382 121 ATFVVDPQGIIQAIEVTAEGIGR---DASDLL 149 (187)
T ss_pred EEEEECCCCEEEEEEEeCCCCCC---CHHHHH
Confidence 999999 9999999998766554 444443
No 7
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.81 E-value=1.5e-19 Score=137.74 Aligned_cols=96 Identities=26% Similarity=0.473 Sum_probs=81.3
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh-------cCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK-------NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~-------~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
..|+|.|.+.+++|+++|+ +|+|||+|++++|++|++. .++ +|++|||++++++++||+..+ .| .
T Consensus 115 t~El~~l~~~~~ef~~~gv-~VigIS~Ds~~~h~aw~~~~~~~~g~~~l--~fPlLsD~~~~iakayGv~~~---~g--~ 186 (261)
T PTZ00137 115 PSELLGFSERLKEFEERGV-KVLGVSVDSPFSHKAWKELDVRQGGVSPL--KFPLFSDISREVSKSFGLLRD---EG--F 186 (261)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHhhhhhhccccCc--ceEEEEcCChHHHHHcCCCCc---CC--c
Confidence 3689999999999999999 6999999999999999974 233 399999999999999999754 24 6
Q ss_pred EeEEEEEEe-CCeEEEEEEecCCCceeeecccccc
Q psy5401 75 SKRYSMVVD-DGKITQLNIEPDGTGLTCSLVDELK 108 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~~~~~~~~~s~a~~vl 108 (109)
+.|++|||| +|+|+|.++.+.+.+. +++++|
T Consensus 187 a~R~tFIID~dG~I~~~~~~~~~~gr---~v~eiL 218 (261)
T PTZ00137 187 SHRASVLVDKAGVVKHVAVYDLGLGR---SVDETL 218 (261)
T ss_pred eecEEEEECCCCEEEEEEEeCCCCCC---CHHHHH
Confidence 889999999 9999999998766654 444443
No 8
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.79 E-value=3.4e-19 Score=132.13 Aligned_cols=95 Identities=21% Similarity=0.305 Sum_probs=79.9
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.+++|.|.+.+++|+++|+ +|++||+|++++|++|++.. +..-+|++|||++++++++||+..+.. .+ .+.|
T Consensus 50 ~tEl~~l~~~~~ef~~~g~-~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~-~~--~~~r 125 (215)
T PRK13191 50 TTEFYSFAKKYEEFKKLNT-ELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES-ST--ATVR 125 (215)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCccccc-CC--ceeE
Confidence 4689999999999999999 69999999999999998622 322249999999999999999976532 12 5789
Q ss_pred EEEEEe-CCeEEEEEEecCCCcee
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLT 100 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~ 100 (109)
++|||| +|+|+++.+.+.+.+.+
T Consensus 126 ~tfIID~~G~Ir~~~~~~~~~gr~ 149 (215)
T PRK13191 126 AVFIVDDKGTVRLILYYPMEIGRN 149 (215)
T ss_pred EEEEECCCCEEEEEEecCCCCCCC
Confidence 999999 99999999988776653
No 9
>KOG0852|consensus
Probab=99.79 E-value=5.4e-19 Score=127.75 Aligned_cols=96 Identities=23% Similarity=0.374 Sum_probs=83.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCC-ceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~-~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
+|+-.|.+.+.+|++.|+ +|+++|+|+.|+|.||.... |+.. .+|||||.+.++++.||++.+.. | .+-|
T Consensus 51 teIiafSd~~~eF~~~n~-eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~--G--~~lR 125 (196)
T KOG0852|consen 51 TEIIAFSDRAPEFRKLNT-EVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDE--G--IALR 125 (196)
T ss_pred hhhhhhhhhHHHHHhcCC-eEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCC--C--ccee
Confidence 688899999999999999 69999999999999998543 4422 38999999999999999998753 4 6889
Q ss_pred EEEEEe-CCeEEEEEEecCCCceeeec
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLTCSL 103 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~~s~ 103 (109)
..|||| +|+++.+.+++-|.+++|.-
T Consensus 126 glfIId~~gi~R~it~NDlpvgRSVdE 152 (196)
T KOG0852|consen 126 GLFIIDPDGILRQITINDLPVGRSVDE 152 (196)
T ss_pred eeEEEccccceEEeeecccCCCccHHH
Confidence 999999 99999999999888877653
No 10
>PRK15000 peroxidase; Provisional
Probab=99.78 E-value=1.2e-18 Score=127.86 Aligned_cols=95 Identities=22% Similarity=0.391 Sum_probs=80.3
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh----cCCCC-ceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK----NNAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~----~~~~~-~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.+|+|.|.+++++|+++|+ +|++||+|++++|++|.+. .++.+ +++++||++++++++||+..+. .| .+.
T Consensus 51 ~~El~~l~~~~~~f~~~g~-~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~--~g--~~~ 125 (200)
T PRK15000 51 PSELIAFDKRYEEFQKRGV-EVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD--EG--VAL 125 (200)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC--CC--cEE
Confidence 3689999999999999999 6999999999999999865 34311 4999999999999999997653 24 578
Q ss_pred EEEEEEe-CCeEEEEEEecCCCceee
Q psy5401 77 RYSMVVD-DGKITQLNIEPDGTGLTC 101 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~~~~~~~~ 101 (109)
|++|||| +|+|++..+.+.+.+..+
T Consensus 126 r~tfiID~~G~I~~~~~~~~~~gr~~ 151 (200)
T PRK15000 126 RGSFLIDANGIVRHQVVNDLPLGRNI 151 (200)
T ss_pred eEEEEECCCCEEEEEEecCCCCCCCH
Confidence 9999999 999999999877766543
No 11
>PRK13189 peroxiredoxin; Provisional
Probab=99.76 E-value=2.2e-18 Score=128.23 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=79.6
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.+|+|.|.+.+++|+++|+ +|++||+|++++|++|.+.. +..-+|+++||++++++++||+..+.. ++ .+.|
T Consensus 52 ~tEl~~l~~~~~ef~~~~v-~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~--~~-~~~r 127 (222)
T PRK13189 52 TTEFVAFQKRYDEFRELNT-ELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK--GT-NTVR 127 (222)
T ss_pred HHHHHHHHHHHHHHHHcCC-EEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc--CC-Ccee
Confidence 3689999999999999999 69999999999999999863 221148999999999999999975421 12 3789
Q ss_pred EEEEEe-CCeEEEEEEecCCCceee
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLTC 101 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~~ 101 (109)
++|||| +|+|+++.+.+.+.+..+
T Consensus 128 ~tfIID~~G~Ir~~~~~~~~~gr~~ 152 (222)
T PRK13189 128 AVFIIDPKGIIRAILYYPQEVGRNM 152 (222)
T ss_pred EEEEECCCCeEEEEEecCCCCCCCH
Confidence 999999 999999999876666543
No 12
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.76 E-value=2.9e-18 Score=127.17 Aligned_cols=94 Identities=23% Similarity=0.336 Sum_probs=78.1
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
++|+|.|.+.+++|+++|+ +|+|||+|++++|++|++.. +..-+|++++|++++++++||+..+.. +.++.|
T Consensus 45 t~El~~l~~~~~~f~~~gv-~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~---~~~~~R 120 (215)
T PRK13599 45 TTEFVEFARKANDFKELNT-ELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK---GTNTVR 120 (215)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCC---CCceee
Confidence 4689999999999999999 79999999999999998732 111139999999999999999975431 235789
Q ss_pred EEEEEe-CCeEEEEEEecCCCce
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
++|||| ||+|+++.+.+...+.
T Consensus 121 ~tfIID~dG~Ir~~~~~p~~~gr 143 (215)
T PRK13599 121 AVFIVDDKGTIRLIMYYPQEVGR 143 (215)
T ss_pred EEEEECCCCEEEEEEEcCCCCCC
Confidence 999999 9999999987655443
No 13
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.75 E-value=6.7e-18 Score=123.66 Aligned_cols=94 Identities=22% Similarity=0.354 Sum_probs=79.2
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh------cCCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK------NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~------~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
++++|.|.+.+++|+++|+ +|++||+|++++|++|.+. .++ +|++++|++++++++||+..... |...+
T Consensus 42 ~~el~~l~~~~~~f~~~gv-~vigvS~D~~~~~~~~~~~i~~~~~~~~--~fpil~D~~~~ia~~yg~~~~~~--~~~~~ 116 (203)
T cd03016 42 TTELGAFAKLAPEFKKRNV-KLIGLSVDSVESHIKWIEDIEEYTGVEI--PFPIIADPDREVAKLLGMIDPDA--GSTLT 116 (203)
T ss_pred HHHHHHHHHHHHHHHHcCC-EEEEEECCCHHHHHHHHhhHHHhcCCCC--ceeEEECchHHHHHHcCCccccC--CCCce
Confidence 4689999999999999999 6999999999999999976 344 39999999999999999975431 22257
Q ss_pred eEEEEEEe-CCeEEEEEEecCCCcee
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDGTGLT 100 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~~~~~ 100 (109)
.|++|||| +|+|+++.+.+...+..
T Consensus 117 ~r~~fiID~~G~I~~~~~~~~~~gr~ 142 (203)
T cd03016 117 VRAVFIIDPDKKIRLILYYPATTGRN 142 (203)
T ss_pred eeEEEEECCCCeEEEEEecCCCCCCC
Confidence 79999999 99999999987655543
No 14
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.74 E-value=1.1e-17 Score=122.52 Aligned_cols=97 Identities=20% Similarity=0.314 Sum_probs=81.0
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh----cCCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK----NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~----~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.+|+|.|.+.+++|+++|+ +|++||+|++++|++|.+. .+..-+|++++|++++++++||+..+. .| .+.|
T Consensus 44 ~~El~~l~~~~~~f~~~~~-~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~--~g--~~~p 118 (202)
T PRK13190 44 TTEFIAFSRRYEDFKKLGV-ELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDEN--SG--ATVR 118 (202)
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCcccc--CC--cEEe
Confidence 3689999999999999999 6999999999999999864 343224999999999999999996543 24 4679
Q ss_pred EEEEEe-CCeEEEEEEecCCCceeeec
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLTCSL 103 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~~s~ 103 (109)
++|||| ||+|+++.+.+.+.+.++..
T Consensus 119 ~~fiId~~G~I~~~~~~~~~~gr~~~e 145 (202)
T PRK13190 119 GVFIIDPNQIVRWMIYYPAETGRNIDE 145 (202)
T ss_pred EEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 999999 99999999988776665443
No 15
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.72 E-value=3.8e-17 Score=118.21 Aligned_cols=92 Identities=32% Similarity=0.550 Sum_probs=77.2
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC--ceEEeecCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG--KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~--~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
..|+|.|.+.+++|++.|+ +|++||+|++++|++|++..+... .|++++|++++++++||+..+. .| .+.|++
T Consensus 48 ~~el~~l~~~~~~~~~~gv-~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~--~g--~~~p~t 122 (187)
T TIGR03137 48 PTELEDLADKYAELKKLGV-EVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEE--AG--LADRGT 122 (187)
T ss_pred HHHHHHHHHHHHHHHhcCC-cEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccC--CC--ceeeEE
Confidence 3689999999999999999 699999999999999998752111 3899999999999999997653 23 467999
Q ss_pred EEEe-CCeEEEEEEecCCCc
Q psy5401 80 MVVD-DGKITQLNIEPDGTG 98 (109)
Q Consensus 80 fiVd-dG~V~~~~v~~~~~~ 98 (109)
|||| +|+|+++++...+.+
T Consensus 123 fiID~~G~I~~~~~~~~~~~ 142 (187)
T TIGR03137 123 FVIDPEGVIQAVEITDNGIG 142 (187)
T ss_pred EEECCCCEEEEEEEeCCCCC
Confidence 9999 999999999865544
No 16
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.6e-17 Score=114.71 Aligned_cols=89 Identities=24% Similarity=0.414 Sum_probs=73.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.|...|.+.+.++. |+ .|+|||.|.||+|++||...|+.+ +..||| .+..|.++||+.+.+..+-| +..|++||
T Consensus 62 ~qvr~Fn~~aa~~~--~~-~Vl~IS~DLPFAq~RfC~aeGi~n-v~~lSd~r~~~Fge~yGv~I~egpL~g-LlARaV~V 136 (158)
T COG2077 62 TQVRKFNEEAAKLG--NT-VVLCISMDLPFAQKRFCGAEGIEN-VITLSDFRDRAFGENYGVLINEGPLAG-LLARAVFV 136 (158)
T ss_pred HHHHHHHHHHhccC--Cc-EEEEEeCCChhHHhhhhhhcCccc-ceEhhhhhhhhhhHhhCEEeccccccC-eeeeEEEE
Confidence 34556776666654 46 699999999999999999999976 999999 57789999999987632212 78899999
Q ss_pred Ee-CCeEEEEEEecCC
Q psy5401 82 VD-DGKITQLNIEPDG 96 (109)
Q Consensus 82 Vd-dG~V~~~~v~~~~ 96 (109)
+| +|+|.|.++.++.
T Consensus 137 ~De~g~V~y~elv~ei 152 (158)
T COG2077 137 LDENGKVTYSELVPEI 152 (158)
T ss_pred EcCCCcEEEEEccchh
Confidence 99 9999999998653
No 17
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.63 E-value=3.9e-15 Score=100.92 Aligned_cols=99 Identities=31% Similarity=0.525 Sum_probs=84.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-CCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++|++.|+ .+++||+|++..+++|.+++ +.. +++|+|+++.++++||+...... ++.+..|++||
T Consensus 40 ~~~~~l~~~~~~~~~~~~-~~i~is~d~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~g~~~~~~~-~~~~~~p~~~l 115 (140)
T cd02971 40 TELCAFRDLAEEFAKGGA-EVLGVSVDSPFSHKAWAEKEGGLN--FPLLSDPDGEFAKAYGVLIEKSA-GGGLAARATFI 115 (140)
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHhcccCCC--ceEEECCChHHHHHcCCcccccc-ccCceeEEEEE
Confidence 468999999999998899 79999999999999999998 553 99999999999999998754321 23367899999
Q ss_pred Ee-CCeEEEEEEecCCCceeeecccccc
Q psy5401 82 VD-DGKITQLNIEPDGTGLTCSLVDELK 108 (109)
Q Consensus 82 Vd-dG~V~~~~v~~~~~~~~~s~a~~vl 108 (109)
|| +|+|+|.++...+ +.++++.+|
T Consensus 116 id~~g~i~~~~~~~~~---~~~~~~~~~ 140 (140)
T cd02971 116 IDPDGKIRYVEVEPLP---TGRNAEELL 140 (140)
T ss_pred ECCCCcEEEEEecCCC---CCcChHhhC
Confidence 99 9999999999876 777777664
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.63 E-value=2.4e-15 Score=106.97 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=73.7
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCcccc-ccCCceeEeEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEI-PVLGGWRSKRYS 79 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~-~~~Gg~r~~R~~ 79 (109)
..|+|.|.+.+++|. |+ +|++||.|+++.+++|.+++++.. +++||| +.++++++||+..+. ...| ...|.+
T Consensus 61 ~~e~~~l~~~~~~~~--~~-~vv~vs~D~~~~~~~f~~~~~~~~-~~~lsD~~~~~~~~~~gv~~~~~~~~g--~~~r~t 134 (167)
T PRK00522 61 ATSVRKFNQEAAELD--NT-VVLCISADLPFAQKRFCGAEGLEN-VITLSDFRDHSFGKAYGVAIAEGPLKG--LLARAV 134 (167)
T ss_pred HHHHHHHHHHHHHcC--Cc-EEEEEeCCCHHHHHHHHHhCCCCC-ceEeecCCccHHHHHhCCeecccccCC--ceeeEE
Confidence 357999999999993 88 799999999999999999998853 899999 566999999997543 1123 578999
Q ss_pred EEEe-CCeEEEEEEec
Q psy5401 80 MVVD-DGKITQLNIEP 94 (109)
Q Consensus 80 fiVd-dG~V~~~~v~~ 94 (109)
|||| +|+|+|.++..
T Consensus 135 fvId~~G~I~~~~~~~ 150 (167)
T PRK00522 135 FVLDENNKVVYSELVP 150 (167)
T ss_pred EEECCCCeEEEEEECC
Confidence 9999 99999999854
No 19
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.62 E-value=1.5e-15 Score=110.75 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=77.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC----CC-CceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN----AE-GKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~----~~-~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.+++.|.+.+++|+++|+ +|++||+|+++.|.+|..... .. -+|++++|++++++++||+.... .| .+.|
T Consensus 54 ~e~~~l~~~~~~f~~~g~-~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~--~g--~~~r 128 (199)
T PTZ00253 54 TEIIQFSDSVKRFNELNC-EVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE--QG--VAYR 128 (199)
T ss_pred HHHHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC--CC--ceEE
Confidence 467899999999999999 799999999999999975321 11 13999999999999999996543 23 4679
Q ss_pred EEEEEe-CCeEEEEEEecCCCceee
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTGLTC 101 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~~~~ 101 (109)
.+|||| +|+|++..+.+.+.+.++
T Consensus 129 ~~fiID~~G~i~~~~~~~~~~~r~~ 153 (199)
T PTZ00253 129 GLFIIDPKGMLRQITVNDMPVGRNV 153 (199)
T ss_pred EEEEECCCCEEEEEEecCCCCCCCH
Confidence 999999 999999999876655443
No 20
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.60 E-value=7e-15 Score=100.75 Aligned_cols=86 Identities=22% Similarity=0.416 Sum_probs=74.2
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCC-chHhHhhCCccccccCCceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN-LEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~-~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
..|+|.|.+.+++|+ |+ .|++||+|++.++++|.++++.. .+++++|+. ++++++||+..+.. | .+.|++|
T Consensus 43 ~~e~~~l~~~~~~~~--~~-~vi~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~--~--~~~~~~~ 114 (143)
T cd03014 43 ATQTKRFNKEAAKLD--NT-VVLTISADLPFAQKRWCGAEGVD-NVTTLSDFRDHSFGKAYGVLIKDL--G--LLARAVF 114 (143)
T ss_pred HHHHHHHHHHHHhcC--CC-EEEEEECCCHHHHHHHHHhcCCC-CceEeecCcccHHHHHhCCeeccC--C--ccceEEE
Confidence 357899999999983 89 69999999999999999999874 399999996 99999999987642 3 4579999
Q ss_pred EEe-CCeEEEEEEecC
Q psy5401 81 VVD-DGKITQLNIEPD 95 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~ 95 (109)
||| +|+|++..+...
T Consensus 115 iid~~G~I~~~~~~~~ 130 (143)
T cd03014 115 VIDENGKVIYVELVPE 130 (143)
T ss_pred EEcCCCeEEEEEECCC
Confidence 999 999999999653
No 21
>KOG0855|consensus
Probab=99.57 E-value=8e-15 Score=105.91 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=70.8
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
++|.|+|+++|++|++.|+ +|+|+|-||.-+|+||+.+++++ +.+|||+.++|.+.+|..-+. +| ....|..+|
T Consensus 107 TkQaCgFRDnY~k~kka~a-eV~GlS~D~s~sqKaF~sKqnlP--YhLLSDpk~e~ik~lGa~k~p--~g-g~~~Rsh~i 180 (211)
T KOG0855|consen 107 TKQACGFRDNYEKFKKAGA-EVIGLSGDDSASQKAFASKQNLP--YHLLSDPKNEVIKDLGAPKDP--FG-GLPGRSHYI 180 (211)
T ss_pred ccccccccccHHHHhhcCc-eEEeeccCchHHHHHhhhhccCC--eeeecCcchhHHHHhCCCCCC--CC-CcccceEEE
Confidence 6899999999999999999 79999999999999999999997 999999999999999998763 23 367899999
Q ss_pred EeCC
Q psy5401 82 VDDG 85 (109)
Q Consensus 82 VddG 85 (109)
.++|
T Consensus 181 f~kg 184 (211)
T KOG0855|consen 181 FDKG 184 (211)
T ss_pred EecC
Confidence 9966
No 22
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.53 E-value=6.2e-14 Score=99.68 Aligned_cols=91 Identities=21% Similarity=0.411 Sum_probs=76.1
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC-----CCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN-----AEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~-----~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.|.+.+++|++.|+ .|++||+|+.+.+++|.+..+ ..-++++++|+.++++++||+..+.. | .+.|
T Consensus 47 ~~l~~l~~~~~~~~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~--~--~~~p 121 (173)
T cd03015 47 TEIIAFSDRYEEFKKLNA-EVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE--G--VALR 121 (173)
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccC--C--ceee
Confidence 478999999999999999 699999999999999988753 11139999999999999999976532 3 4568
Q ss_pred EEEEEe-CCeEEEEEEecCCCc
Q psy5401 78 YSMVVD-DGKITQLNIEPDGTG 98 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~~~~ 98 (109)
.+|||| +|+|+|.++...+.+
T Consensus 122 ~~~lID~~G~I~~~~~~~~~~~ 143 (173)
T cd03015 122 GTFIIDPEGIIRHITVNDLPVG 143 (173)
T ss_pred EEEEECCCCeEEEEEecCCCCC
Confidence 999999 999999999765533
No 23
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.50 E-value=1.7e-13 Score=93.96 Aligned_cols=96 Identities=28% Similarity=0.353 Sum_probs=79.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCC--chHhHhhCCccccccCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN--LEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~--~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
.++|.+.+.+++|+++|+ .|++||+|++..+++|.++++.. +++++|++ +++++.||+..... | ...|.+|
T Consensus 46 ~~~~~l~~~~~~~~~~~v-~vi~vs~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~g~~~~~~--~--~~~~~~~ 118 (149)
T cd03018 46 KELCALRDSLELFEAAGA-EVLGISVDSPFSLRAWAEENGLT--FPLLSDFWPHGEVAKAYGVFDEDL--G--VAERAVF 118 (149)
T ss_pred HHHHHHHHHHHHHHhCCC-EEEEecCCCHHHHHHHHHhcCCC--ceEecCCCchhHHHHHhCCccccC--C--CccceEE
Confidence 589999999999999999 69999999999999999999875 99999988 99999999875421 2 3457899
Q ss_pred EEe-CCeEEEEEEecCCCceeeeccc
Q psy5401 81 VVD-DGKITQLNIEPDGTGLTCSLVD 105 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~~~~~~~s~a~ 105 (109)
||| +|+|++.+........+....+
T Consensus 119 lid~~G~v~~~~~~~~~~~~~~~~~~ 144 (149)
T cd03018 119 VIDRDGIIRYAWVSDDGEPRDLPDYD 144 (149)
T ss_pred EECCCCEEEEEEecCCcccccchhHH
Confidence 999 9999999998763333443333
No 24
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.49 E-value=3.2e-13 Score=91.99 Aligned_cols=88 Identities=20% Similarity=0.285 Sum_probs=75.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccc--------------
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP-------------- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~-------------- 68 (109)
.|+|.+.+.+++|++.|+ .|++||.|++..+.+|.+..++. +++++|+++++.++||+.....
T Consensus 41 ~~~~~l~~~~~~~~~~~v-~vv~V~~~~~~~~~~~~~~~~~~--~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 117 (149)
T cd02970 41 EYLRALSKLLPELDALGV-ELVAVGPESPEKLEAFDKGKFLP--FPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAI 117 (149)
T ss_pred HHHHHHHHHHHHHHhcCe-EEEEEeCCCHHHHHHHHHhcCCC--CeEEECCchhHHHHcCceecCcHHHHHHHHhhCccc
Confidence 579999999999999999 69999999999999999998885 9999999999999999964321
Q ss_pred -----cCCceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 -----VLGGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 -----~~Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..|.....+++|||| +|+|+|.++.
T Consensus 118 ~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 118 GFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred ccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 011224679999999 9999999874
No 25
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.46 E-value=7.8e-13 Score=91.83 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=74.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC--ceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG--GWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G--g~r~~R~~f 80 (109)
.++|.+.+.+++|++.|+ +|++||.|++..+++|.++.+.. +++|+|+++.++++||+.......| .....|.+|
T Consensus 48 ~~~~~l~~~~~~~~~~~v-~vi~Is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~ 124 (154)
T PRK09437 48 VQACGLRDNMDELKKAGV-VVLGISTDKPEKLSRFAEKELLN--FTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISF 124 (154)
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHhCCC--CeEEECCCchHHHHhCCCcccccccccccCcceEEE
Confidence 367889999999999999 79999999999999999999885 9999999999999999864321111 112358899
Q ss_pred EEe-CCeEEEEEEecC
Q psy5401 81 VVD-DGKITQLNIEPD 95 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~ 95 (109)
||| +|+|++.+....
T Consensus 125 lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 125 LIDADGKIEHVFDKFK 140 (154)
T ss_pred EECCCCEEEEEEcCCC
Confidence 999 999999987543
No 26
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.46 E-value=9.9e-13 Score=89.18 Aligned_cols=88 Identities=19% Similarity=0.241 Sum_probs=75.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.|+|.+.+.+++|+++|+ +|++||+|++..+++|.+..+.. +++++|++++++++||+..... -|.....|.++||
T Consensus 41 ~~~~~l~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~~~-~~~~~~~p~~~li 116 (140)
T cd03017 41 KEACDFRDLYEEFKALGA-VVIGVSPDSVESHAKFAEKYGLP--FPLLSDPDGKLAKAYGVWGEKK-KKYMGIERSTFLI 116 (140)
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHhCCC--ceEEECCccHHHHHhCCccccc-cccCCcceeEEEE
Confidence 478999999999999999 79999999999999999999885 9999999999999999875421 1222466899999
Q ss_pred e-CCeEEEEEEec
Q psy5401 83 D-DGKITQLNIEP 94 (109)
Q Consensus 83 d-dG~V~~~~v~~ 94 (109)
| +|+|++.+...
T Consensus 117 d~~G~v~~~~~g~ 129 (140)
T cd03017 117 DPDGKIVKVWRKV 129 (140)
T ss_pred CCCCEEEEEEecC
Confidence 9 99999998654
No 27
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.41 E-value=2.8e-12 Score=85.06 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=72.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.++|.+.+.+++|+++|+ .|++||.|++..+++|.+..+.. +++++|++++++++||+..... .-..+.+|||
T Consensus 43 ~~l~~l~~~~~~~~~~~~-~vi~is~d~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~----~~~~p~~~li 115 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGV-QVIGISTDDPEEIKQFLEEYGLP--FPVLSDPDGELAKAFGIEDEKD----TLALPAVFLI 115 (124)
T ss_dssp HHHHHHHHHHHHHHTTTE-EEEEEESSSHHHHHHHHHHHTCS--SEEEEETTSHHHHHTTCEETTT----SEESEEEEEE
T ss_pred cchhHHHHHhhhhccceE-Eeeecccccccchhhhhhhhccc--cccccCcchHHHHHcCCccccC----CceEeEEEEE
Confidence 478999999999999999 79999999999999999999975 9999999999999999975431 1356899999
Q ss_pred e-CCeEEEE
Q psy5401 83 D-DGKITQL 90 (109)
Q Consensus 83 d-dG~V~~~ 90 (109)
| +|+|+|.
T Consensus 116 d~~g~I~~~ 124 (124)
T PF00578_consen 116 DPDGKIRYA 124 (124)
T ss_dssp ETTSBEEEE
T ss_pred CCCCEEEeC
Confidence 9 9999985
No 28
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.28 E-value=2e-11 Score=83.72 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=73.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.++|.+.+.+++++++|++ +++|+.++....++|.++.+.. +++++|++++++++||+........+ ..-..++||
T Consensus 46 ~~~p~l~~l~~~~~~~~v~-~v~v~~~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~~~-~~~P~~~lI 121 (146)
T PF08534_consen 46 KELPYLNELQEKYKDKGVD-VVGVSSDDDPPVREFLKKYGIN--FPVLSDPDGALAKALGVTIMEDPGNG-FGIPTTFLI 121 (146)
T ss_dssp HHHHHHHHHHHHHHTTTCE-EEEEEESSSHHHHHHHHHTTTT--SEEEEETTSHHHHHTTCEEECCTTTT-SSSSEEEEE
T ss_pred hhhhhHHhhhhhhccCceE-EEEecccCCHHHHHHHHhhCCC--ceEEechHHHHHHHhCCccccccccC-CeecEEEEE
Confidence 4678777777777999995 7666666544477777777764 99999999999999998644321112 223445677
Q ss_pred e-CCeEEEEEEecCCCceeeecccccc
Q psy5401 83 D-DGKITQLNIEPDGTGLTCSLVDELK 108 (109)
Q Consensus 83 d-dG~V~~~~v~~~~~~~~~s~a~~vl 108 (109)
| ||+|+|......+ + +.+.+|+||
T Consensus 122 d~~G~V~~~~~g~~~-~-~~~~~~~~l 146 (146)
T PF08534_consen 122 DKDGKVVYRHVGPDP-D-EESDLEAVL 146 (146)
T ss_dssp ETTSBEEEEEESSBT-T-SHHSHHHHH
T ss_pred ECCCEEEEEEeCCCC-C-CCCChhhcC
Confidence 7 9999999999876 4 788998887
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.15 E-value=1.7e-10 Score=77.87 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=68.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec------CCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~------dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.++++++.|+ +|++|+. +++..+++|.+++++. +++++|+++++.+.||+. + .
T Consensus 40 ~~~p~l~~l~~~~~~~~~-~vi~i~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~D~~~~~~~~~~v~------~----~ 106 (126)
T cd03012 40 HTLPYLTDLEQKYKDDGL-VVIGVHSPEFAFERDLANVKSAVLRYGIT--YPVANDNDYATWRAYGNQ------Y----W 106 (126)
T ss_pred HHHHHHHHHHHHcCcCCe-EEEEeccCccccccCHHHHHHHHHHcCCC--CCEEECCchHHHHHhCCC------c----C
Confidence 578999999999999999 7999987 5799999999999985 999999999999999873 2 2
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
+.+|||| +|+|++..+-
T Consensus 107 P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 107 PALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CeEEEECCCCcEEEEEec
Confidence 5789999 9999998764
No 30
>KOG0854|consensus
Probab=99.05 E-value=8.6e-10 Score=80.57 Aligned_cols=100 Identities=21% Similarity=0.346 Sum_probs=81.1
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC----CCC---ceEEeecCCchHhHhhCCcccc--ccCCc
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN----AEG---KIRFLADPNLEFTKKLGVEHEI--PVLGG 72 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~----~~~---~i~~lsD~~~~~~k~~G~~~~~--~~~Gg 72 (109)
+++|-.|..+..||..+|| ..+++|+|++-+|+.|.+.-+ ..+ .+++++|++.+++=.|||.... ...|-
T Consensus 49 TTElgr~Akl~pEF~KRnv-KlialS~d~vesH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~ 127 (224)
T KOG0854|consen 49 TTELGRFAKLAPEFDKRNV-KLIALSVDDVESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGD 127 (224)
T ss_pred hHHHHHHHhhChhhhhcCc-eEEEeehhhHHHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCC
Confidence 5678899999999999999 799999999999999987541 111 3899999999999999996543 22232
Q ss_pred eeEeEEEEEEe-CCeEEEEEEecCCCceeee
Q psy5401 73 WRSKRYSMVVD-DGKITQLNIEPDGTGLTCS 102 (109)
Q Consensus 73 ~r~~R~~fiVd-dG~V~~~~v~~~~~~~~~s 102 (109)
...-|++|||+ |-+|+-....+..++++.+
T Consensus 128 ~~T~Ravfvi~pdkKirLs~lYP~ttGRN~d 158 (224)
T KOG0854|consen 128 GKTVRAVFVIDPDKKIRLSFLYPSTTGRNFD 158 (224)
T ss_pred CceEEEEEEECCCceEEEEEEcccccCcCHH
Confidence 26779999999 9999999988877776653
No 31
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.02 E-value=7.7e-10 Score=77.09 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=68.5
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHh-cCCCCceEEeecC--Cch-HhHhhCCcccc-c
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRK-NNAEGKIRFLADP--NLE-FTKKLGVEHEI-P 68 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~-~~~~~~i~~lsD~--~~~-~~k~~G~~~~~-~ 68 (109)
.+++|.+.+.+++|+++|+ .|++||.| ++..+++|.++ +++. +++++|. ++. ..++||..... +
T Consensus 37 ~~e~p~l~~l~~~~~~~~~-~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~--fp~~~d~d~~~~~~~~~~~~~~~~~p 113 (152)
T cd00340 37 TPQYEGLEALYEKYKDRGL-VVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT--FPMFAKIDVNGENAHPLYKYLKEEAP 113 (152)
T ss_pred hHHHHHHHHHHHHhcCCCE-EEEEeccCccccCCCCCHHHHHHHHHHhcCCC--ceeeeeEeccCCCCChHHHHHHhcCC
Confidence 4689999999999999999 79999974 58899999987 7875 9999874 555 56777753221 1
Q ss_pred cC--CceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 69 VL--GGWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 69 ~~--Gg~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
.. +..+..|.+|||| ||+|++.....
T Consensus 114 ~~~~~~~~~~~ttflId~~G~i~~~~~G~ 142 (152)
T cd00340 114 GLLGKDIKWNFTKFLVDRDGEVVKRFAPT 142 (152)
T ss_pred CCCCCccccccEEEEECCCCcEEEEECCC
Confidence 10 1234568999999 99999987754
No 32
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.96 E-value=3.8e-09 Score=71.63 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=68.6
Q ss_pred CcchhHHHcHHHHHhCC---CCEEEEEec----CCHHHHHHHHHhcCCCCceEEeecCC---chHhHhhCCccccccC--
Q psy5401 3 THLPGYLAKEKDLKAKG---IHEIFCIAV----NDAFVMEAWCRKNNAEGKIRFLADPN---LEFTKKLGVEHEIPVL-- 70 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~G---vd~V~~iS~----dd~f~~~aW~~~~~~~~~i~~lsD~~---~~~~k~~G~~~~~~~~-- 70 (109)
.++|.+.+.+++|++.| + ++++||. |++..+++|.+.++.. +++|+|+. +.++++||+.......
T Consensus 40 ~~l~~l~~~~~~~~~~~~~~v-~~v~vs~d~~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~g~~~~~~~~~~ 116 (142)
T cd02968 40 TTLANLAQALKQLGADGGDDV-QVVFISVDPERDTPEVLKAYAKAFGPG--WIGLTGTPEEIEALAKAFGVYYEKVPEDD 116 (142)
T ss_pred HHHHHHHHHHHHhhHhhcCce-EEEEEEECCCCCCHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHhcEEEEecCCCC
Confidence 47899999999999875 8 7999998 4679999999999864 99999975 8999999987543110
Q ss_pred -C-ceeEeEEEEEEe-CCeEEEEE
Q psy5401 71 -G-GWRSKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 71 -G-g~r~~R~~fiVd-dG~V~~~~ 91 (109)
+ +....|.+|||| +|+|++.+
T Consensus 117 ~~~~~~~~~~~~lid~~G~i~~~~ 140 (142)
T cd02968 117 GDYLVDHSAAIYLVDPDGKLVRYY 140 (142)
T ss_pred CceeEeccceEEEECCCCCEEEee
Confidence 1 223468999999 99999864
No 33
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.96 E-value=5.5e-09 Score=73.77 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=67.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
.++|.+.+.+++|+++++ ++++||.| ++..+++|.+..+.. +++++|+++.+++.||+..
T Consensus 42 ~~~~~l~~l~~~~~~~~v-~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~--------- 109 (171)
T cd02969 42 AIEDRLNRLAKEYGAKGV-AVVAINSNDIEAYPEDSPENMKAKAKEHGYP--FPYLLDETQEVAKAYGAAC--------- 109 (171)
T ss_pred HHHHHHHHHHHHHhhCCe-EEEEEecCccccccccCHHHHHHHHHHCCCC--ceEEECCchHHHHHcCCCc---------
Confidence 467899999999998899 79999996 478999999988885 9999999999999999842
Q ss_pred EeEEEEEEe-CCeEEEEEEec
Q psy5401 75 SKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~~ 94 (109)
.++++||| +|+|+|.....
T Consensus 110 -~P~~~lid~~G~v~~~~~~~ 129 (171)
T cd02969 110 -TPDFFLFDPDGKLVYRGRID 129 (171)
T ss_pred -CCcEEEECCCCeEEEeeccc
Confidence 15689999 99999987654
No 34
>PLN02412 probable glutathione peroxidase
Probab=98.92 E-value=3e-09 Score=75.63 Aligned_cols=89 Identities=18% Similarity=0.206 Sum_probs=67.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CH-HHHHHHHHhcCCCCceEEee--cCCc-hHhHhhCCccccc-c
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DA-FVMEAWCRKNNAEGKIRFLA--DPNL-EFTKKLGVEHEIP-V 69 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~-f~~~aW~~~~~~~~~i~~ls--D~~~-~~~k~~G~~~~~~-~ 69 (109)
.++|.+.+.+++|+++|+ .|++||.| ++ .+++.|++++++. +++++ |+++ ..++.|+...... .
T Consensus 46 ~e~~~l~~l~~~~~~~g~-~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~--fpvl~~~d~~g~~~~~~~~~~~~~~~~ 122 (167)
T PLN02412 46 SNYKELNVLYEKYKEQGF-EILAFPCNQFLGQEPGSNEEIQQTVCTRFKAE--FPIFDKVDVNGKNTAPLYKYLKAEKGG 122 (167)
T ss_pred HHHHHHHHHHHHHhhCCc-EEEEecccccccCCCCCHHHHHHHHHHccCCC--CceEeEEeeCCCCCCHHHHHHHhhCCC
Confidence 478999999999999999 79999975 33 4467778888885 99998 4675 8888888643321 1
Q ss_pred C-C-ceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 70 L-G-GWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 70 ~-G-g~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
+ | +.+..|++|||| +|+|++.+...
T Consensus 123 ~~~~~v~~~p~tflId~~G~vv~~~~g~ 150 (167)
T PLN02412 123 LFGDAIKWNFTKFLVSKEGKVVQRYAPT 150 (167)
T ss_pred CCCCCcCCCCeeEEECCCCcEEEEECCC
Confidence 1 1 234568999999 99999988643
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.89 E-value=4.5e-09 Score=73.20 Aligned_cols=89 Identities=8% Similarity=0.156 Sum_probs=66.0
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHHHh-cCCCCceEEeecC---CchHhHhhCCcccccc
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWCRK-NNAEGKIRFLADP---NLEFTKKLGVEHEIPV 69 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~~~-~~~~~~i~~lsD~---~~~~~k~~G~~~~~~~ 69 (109)
.+++|.+.+.++++++.|+ .|++|+. |++..+++|+++ +++. +++++|. ......+|+...+..
T Consensus 38 ~~~~~~l~~l~~~~~~~~~-~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~--fp~~~d~~~~~~~~~~~~~~~~~~~- 113 (153)
T TIGR02540 38 DQNYRALQELHRELGPSHF-NVLAFPCNQFGESEPDSSKEIESFARRNYGVT--FPMFSKIKILGSEAEPAFRFLVDSS- 113 (153)
T ss_pred hhhHHHHHHHHHHHhhCCe-EEEEEeccccccCCCCCHHHHHHHHHHhcCCC--CCccceEecCCCCCCcHHHHHHhcC-
Confidence 3678999999999999999 7999994 788999999986 7885 9999883 334444444433211
Q ss_pred CCceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 70 LGGWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 70 ~Gg~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
.+.....|.+|||| +|+|++.....
T Consensus 114 ~~~p~~~~~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 114 KKEPRWNFWKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred CCCCCCccEEEEEcCCCcEEEEECCC
Confidence 01113378999999 99999987653
No 36
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.71 E-value=1.6e-08 Score=72.78 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=63.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHH-HhcCCCCceEEeec--CCchH-hHhhCCcccccc-
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWC-RKNNAEGKIRFLAD--PNLEF-TKKLGVEHEIPV- 69 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~-~~~~~~~~i~~lsD--~~~~~-~k~~G~~~~~~~- 69 (109)
.++|.+.+.+++|+++|+ .|++||+| ++...++|. +.+++. +++++| .++.. .+.|++..+...
T Consensus 58 ~e~p~l~~l~~~~~~~gv-~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~--fpv~~d~d~~g~~~~~~~~~l~~~~~~ 134 (183)
T PTZ00256 58 DHYTQLVELYKQYKSQGL-EILAFPCNQFMEQEPWDEPEIKEYVQKKFNVD--FPLFQKIEVNGENTHEIYKYLRRNSEL 134 (183)
T ss_pred HHHHHHHHHHHHHhhCCc-EEEEEecccccccCCCCHHHHHHHHHHhcCCC--CCCceEEecCCCCCCHHHHHHHhhCCC
Confidence 578999999999999999 79999976 345566664 577875 899976 67665 456643222110
Q ss_pred ----CC---ceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 70 ----LG---GWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 70 ----~G---g~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
.| +.-..|.+|||| +|+|++..+..
T Consensus 135 ~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~ 167 (183)
T PTZ00256 135 FQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPK 167 (183)
T ss_pred CcCccccCcccCcceEEEEECCCCCEEEEECCC
Confidence 01 122357899999 99999988754
No 37
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.53 E-value=9.7e-07 Score=63.53 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=57.2
Q ss_pred HHHHHhCCCCEEEEEec-CCHHHHHHHHHhcCCCCceE-EeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEE
Q psy5401 12 EKDLKAKGIHEIFCIAV-NDAFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKIT 88 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~-dd~f~~~aW~~~~~~~~~i~-~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~ 88 (109)
+.+|+++|+ +|++|+. |++..+++|.++++.. ++ .+.|++++++++||+. | -..+|+|| +|+|+
T Consensus 90 l~~l~~~~~-~vi~v~~~~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~gv~------~----~P~t~vid~~G~i~ 156 (185)
T PRK15412 90 LNQLSAQGI-RVVGMNYKDDRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVY------G----APETFLIDGNGIIR 156 (185)
T ss_pred HHHHHHcCC-EEEEEECCCCHHHHHHHHHHcCCC--CceEEEcCCccHHHhcCCC------c----CCeEEEECCCceEE
Confidence 456677799 6999997 5688899999999875 65 5899999999999874 2 14689999 99999
Q ss_pred EEEEec
Q psy5401 89 QLNIEP 94 (109)
Q Consensus 89 ~~~v~~ 94 (109)
+..+.+
T Consensus 157 ~~~~G~ 162 (185)
T PRK15412 157 YRHAGD 162 (185)
T ss_pred EEEecC
Confidence 998864
No 38
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.49 E-value=5.4e-07 Score=66.01 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=61.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHHHhcCCCCceEEeecC--Cc----hHh--------Hh
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWCRKNNAEGKIRFLADP--NL----EFT--------KK 60 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~~~~~~~~~i~~lsD~--~~----~~~--------k~ 60 (109)
.++|.+.+.++++++.|+ +|++||. |++..+++|.+.+++. +++++|. +| .+. +.
T Consensus 56 ~e~p~L~~l~~~~~~~g~-~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~--fpvl~d~~v~g~~~~~l~~~l~~~~~~~ 132 (199)
T PTZ00056 56 KHVDQMNRLHSVFNPLGL-EILAFPTSQFLNQEFPNTKDIRKFNDKNKIK--YNFFEPIEVNGENTHELFKFLKANCDSM 132 (199)
T ss_pred HHHHHHHHHHHHHhcCce-EEEEecchhccCCCCCCHHHHHHHHHHcCCC--ceeeeeeeccCCccCHHHHHHHHhCccc
Confidence 578999999999999999 7999996 6789999999999985 9999873 22 222 22
Q ss_pred hCCccccccCCceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 61 LGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 61 ~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
|+..... .+....+.+|||| +|+|++....
T Consensus 133 ~d~~~~~---~~i~~~~~tflID~~G~iv~~~~g 163 (199)
T PTZ00056 133 HDENGTL---KAIGWNFGKFLVNKSGNVVAYFSP 163 (199)
T ss_pred ccccccC---CccCCCCEEEEECCCCcEEEEeCC
Confidence 3321110 0112235799999 9999977653
No 39
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.46 E-value=1.1e-06 Score=61.37 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=65.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
+++|.|.+.+++|++.++ .+++||.|+ +..++.|.+..+.. ++++.|.++++++.||+. + -..+|+
T Consensus 78 ~~~~~l~~~~~~~~~~~~-~vi~i~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~------~----~P~~~l 144 (173)
T PRK03147 78 KEMPYMNELYPKYKEKGV-EIIAVNVDETELAVKNFVNRYGLT--FPVAIDKGRQVIDAYGVG------P----LPTTFL 144 (173)
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEEEcCCCHHHHHHHHHHhCCC--ceEEECCcchHHHHcCCC------C----cCeEEE
Confidence 467889999999998889 699999875 47889999999885 899999999999999973 1 146789
Q ss_pred Ee-CCeEEEEEEe
Q psy5401 82 VD-DGKITQLNIE 93 (109)
Q Consensus 82 Vd-dG~V~~~~v~ 93 (109)
|| +|+|.+....
T Consensus 145 id~~g~i~~~~~g 157 (173)
T PRK03147 145 IDKDGKVVKVITG 157 (173)
T ss_pred ECCCCcEEEEEeC
Confidence 98 9999877543
No 40
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.37 E-value=4.5e-06 Score=59.31 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=56.5
Q ss_pred HcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceE-EeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCe
Q psy5401 10 AKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGK 86 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~-~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~ 86 (109)
..+.+|.++|+ +|++|+.+ +...+++|.++.+.. ++ ++.|++++++++||+. | -+.+|+|| ||+
T Consensus 83 p~l~~l~~~~~-~vi~V~~~~~~~~~~~~~~~~~~~--f~~v~~D~~~~~~~~~~v~------~----~P~~~~id~~G~ 149 (173)
T TIGR00385 83 PYLNELAKDGL-PIVGVDYKDQSQNALKFLKELGNP--YQAILIDPNGKLGLDLGVY------G----APETFLVDGNGV 149 (173)
T ss_pred HHHHHHHHcCC-EEEEEECCCChHHHHHHHHHcCCC--CceEEECCCCchHHhcCCe------e----CCeEEEEcCCce
Confidence 34566777899 79999985 567778999998875 65 6789999999999874 2 25789998 999
Q ss_pred EEEEEEe
Q psy5401 87 ITQLNIE 93 (109)
Q Consensus 87 V~~~~v~ 93 (109)
|++....
T Consensus 150 i~~~~~G 156 (173)
T TIGR00385 150 ILYRHAG 156 (173)
T ss_pred EEEEEec
Confidence 9998765
No 41
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.33 E-value=1.7e-06 Score=65.31 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=64.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHH-HhcCCCCceEEee--cCCc-hHhHhhCCcccc-c-
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWC-RKNNAEGKIRFLA--DPNL-EFTKKLGVEHEI-P- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~-~~~~~~~~i~~ls--D~~~-~~~k~~G~~~~~-~- 68 (109)
.++|.+.+.+++++++|+ +|++|+. +++..+++|. +.+++. +++++ |.+| ..+..|++.... .
T Consensus 116 ~e~p~L~~L~~~~~~~Gv-~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~--fPvl~~~D~~G~~~~~~y~~l~~~~~~ 192 (236)
T PLN02399 116 SNYSELSHLYEKYKTQGF-EILAFPCNQFGGQEPGSNPEIKQFACTRFKAE--FPIFDKVDVNGPSTAPVYQFLKSNAGG 192 (236)
T ss_pred HHHHHHHHHHHHHhcCCc-EEEEEecccccccCCCCHHHHHHHHHHhcCCC--CccccccCCCcchhhHHHHHHHHhcCC
Confidence 478999999999999999 7999996 4677888987 677875 88886 4566 566777653211 0
Q ss_pred cCC-ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 VLG-GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~~G-g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..| ..+....+|||| +|+|++...-
T Consensus 193 ~~g~~i~~~PttfLIDk~GkVv~~~~G 219 (236)
T PLN02399 193 FLGDLIKWNFEKFLVDKNGKVVERYPP 219 (236)
T ss_pred ccCCccccCceEEEECCCCcEEEEECC
Confidence 011 123346799999 9999998764
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.32 E-value=4.7e-06 Score=52.78 Aligned_cols=76 Identities=28% Similarity=0.483 Sum_probs=62.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCC--HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVND--AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd--~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
..+|.+.+..+++.+.++ .++.|++|. +...++|.+..+.. ++++.|.+.++.+.||+.. ...++
T Consensus 36 ~~~~~l~~~~~~~~~~~~-~~~~v~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----------~P~~~ 102 (116)
T cd02966 36 AEMPELEALAKEYKDDGV-EVVGVNVDDDDPAAVKAFLKKYGIT--FPVLLDPDGELAKAYGVRG----------LPTTF 102 (116)
T ss_pred HHhHHHHHHHHHhCCCCe-EEEEEECCCCCHHHHHHHHHHcCCC--cceEEcCcchHHHhcCcCc----------cceEE
Confidence 356778888888876788 699999999 99999999999864 9999999999999999741 12467
Q ss_pred EEe-CCeEEEEE
Q psy5401 81 VVD-DGKITQLN 91 (109)
Q Consensus 81 iVd-dG~V~~~~ 91 (109)
|+| +|+|.+..
T Consensus 103 l~d~~g~v~~~~ 114 (116)
T cd02966 103 LIDRDGRIRARH 114 (116)
T ss_pred EECCCCcEEEEe
Confidence 888 99988764
No 43
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=98.27 E-value=1.8e-05 Score=52.51 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=64.8
Q ss_pred HHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCcccc---------------------
Q psy5401 9 LAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI--------------------- 67 (109)
Q Consensus 9 ~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~--------------------- 67 (109)
.+..++|+++|| .+++|+..++...++|++..+.+ +++++|++.++-+++|+....
T Consensus 3 ~~~~~~l~~~gv-~lv~I~~g~~~~~~~f~~~~~~p--~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (115)
T PF13911_consen 3 SRRKPELEAAGV-KLVVIGCGSPEGIEKFCELTGFP--FPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAK 79 (115)
T ss_pred hHhHHHHHHcCC-eEEEEEcCCHHHHHHHHhccCCC--CcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHH
Confidence 456889999999 59999999998899999988875 889999999999999985310
Q ss_pred -----ccC--CceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 68 -----PVL--GGWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 68 -----~~~--Gg~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
... |...-.=.+||+| +|+|.|.+.+.
T Consensus 80 ~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~~ 114 (115)
T PF13911_consen 80 NGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRDR 114 (115)
T ss_pred HcCCCCcccCCCceecCeEEEEcCCCeEEEEEecC
Confidence 001 2112223689998 89999998764
No 44
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.17 E-value=2.9e-05 Score=51.84 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCCEEEEEec-CCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 19 GIHEIFCIAV-NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 19 Gvd~V~~iS~-dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
++ +|++||. +++..+++|.+.++..- .+++.|.++++++.||+.. -..++++| +|+|++....
T Consensus 55 ~~-~vv~v~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~v~~----------~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 55 RV-PIYGINYKDNPENALAWLARHGNPY-AAVGFDPDGRVGIDLGVYG----------VPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred Cc-EEEEEECCCCHHHHHHHHHhcCCCC-ceEEECCcchHHHhcCCCC----------CCeEEEECCCceEEEEEec
Confidence 58 6999995 78999999999988852 3578999999999998741 14578998 9999988664
No 45
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.03 E-value=3e-05 Score=50.58 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=55.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
+++|.+.+.+++++ .++ .|+.+|.+++..+++|.+.+++.. ++.+.| ..+++.||+.. -..+|||
T Consensus 38 ~~~p~l~~~~~~~~-~~~-~vi~v~~~~~~~~~~~~~~~~~~~-~p~~~~--~~~~~~~~~~~----------~P~~~vi 102 (114)
T cd02967 38 KLLPVIRSIARAEA-DWL-DVVLASDGEKAEHQRFLKKHGLEA-FPYVLS--AELGMAYQVSK----------LPYAVLL 102 (114)
T ss_pred hHhHHHHHHHHHhc-CCc-EEEEEeCCCHHHHHHHHHHhCCCC-CcEEec--HHHHhhcCCCC----------cCeEEEE
Confidence 46788877666653 467 588999999999999999999853 666653 56888888631 2466999
Q ss_pred e-CCeEEEEEE
Q psy5401 83 D-DGKITQLNI 92 (109)
Q Consensus 83 d-dG~V~~~~v 92 (109)
| +|+|+|..+
T Consensus 103 d~~G~v~~~~~ 113 (114)
T cd02967 103 DEAGVIAAKGL 113 (114)
T ss_pred CCCCeEEeccc
Confidence 9 999998753
No 46
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.85 E-value=0.00015 Score=47.76 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCEEEEEecCC--HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEE
Q psy5401 20 IHEIFCIAVND--AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 20 vd~V~~iS~dd--~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v 92 (109)
+ .+++||+|+ +..+++|.++.++. ++++.|+++++.+.||+. + -.+.+|+| +| |++...
T Consensus 49 ~-~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~------~----~P~~~vid~~g-i~~~~~ 110 (123)
T cd03011 49 Y-PVVSVALRSGDDGAVARFMQKKGYG--FPVINDPDGVISARWGVS------V----TPAIVIVDPGG-IVFVTT 110 (123)
T ss_pred C-CEEEEEccCCCHHHHHHHHHHcCCC--ccEEECCCcHHHHhCCCC------c----ccEEEEEcCCC-eEEEEe
Confidence 5 588998864 89999999999985 999999999999999873 1 14678888 77 877654
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.81 E-value=9.3e-05 Score=52.17 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=58.2
Q ss_pred CcchhHHHcHHHHHhC-------CCCEEEEEecCC-HHHHHHHHHhcCCCCc-eEEeecCCchHhHhhCCccccccCCce
Q psy5401 3 THLPGYLAKEKDLKAK-------GIHEIFCIAVND-AFVMEAWCRKNNAEGK-IRFLADPNLEFTKKLGVEHEIPVLGGW 73 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~-------Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~-i~~lsD~~~~~~k~~G~~~~~~~~Gg~ 73 (109)
.++|.+.+.+++++++ ++ +|++||.|. .-..++|.+++++.-. +++..+..+++++.||+.. +.
T Consensus 42 ~e~P~L~~ly~~~~~~~~~~~~~~~-~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~----iP-- 114 (146)
T cd03008 42 LFAPKLKDFFVRLTDEFYVDRSAQL-ALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEE----LP-- 114 (146)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCE-EEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCC----CC--
Confidence 4678888888888754 68 799999995 4457889998886311 3556666779999999741 11
Q ss_pred eEeEEEEEEe-CCeEEEEEE
Q psy5401 74 RSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 74 r~~R~~fiVd-dG~V~~~~v 92 (109)
++++|| +|+|+.-..
T Consensus 115 ----t~vlId~~G~Vv~~~~ 130 (146)
T cd03008 115 ----TVVVLKPDGDVLAANA 130 (146)
T ss_pred ----EEEEECCCCcEEeeCh
Confidence 678999 999987643
No 48
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.78 E-value=0.00011 Score=53.09 Aligned_cols=72 Identities=15% Similarity=0.210 Sum_probs=53.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
+++|.+.+.++ +.|+ .+++||.|++..+++|.+++++. ++.+. .+++++++||+.. . -++|||
T Consensus 91 ~~lp~l~~~~~---~~~~-~vv~Is~~~~~~~~~~~~~~~~~--~~~~~-~~~~i~~~y~v~~----~------P~~~lI 153 (189)
T TIGR02661 91 KLFPIIKSIAR---AEET-DVVMISDGTPAEHRRFLKDHELG--GERYV-VSAEIGMAFQVGK----I------PYGVLL 153 (189)
T ss_pred HHHHHHHHHHH---hcCC-cEEEEeCCCHHHHHHHHHhcCCC--cceee-chhHHHHhccCCc----c------ceEEEE
Confidence 35666665443 3478 59999999999999999999885 43332 5688999998741 1 145899
Q ss_pred e-CCeEEEEE
Q psy5401 83 D-DGKITQLN 91 (109)
Q Consensus 83 d-dG~V~~~~ 91 (109)
| +|+|++..
T Consensus 154 D~~G~I~~~g 163 (189)
T TIGR02661 154 DQDGKIRAKG 163 (189)
T ss_pred CCCCeEEEcc
Confidence 9 99999863
No 49
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.68 E-value=0.00032 Score=51.26 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=52.9
Q ss_pred cHHHHHhCCCCEE------EEEecCC-HHHHHHH----HHhcCCCCceE---EeecCCchHhHhhCCccccccCCceeEe
Q psy5401 11 KEKDLKAKGIHEI------FCIAVND-AFVMEAW----CRKNNAEGKIR---FLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 11 ~~~~f~~~Gvd~V------~~iS~dd-~f~~~aW----~~~~~~~~~i~---~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.+++++++|+. + ++|+.|+ ++....| .++.+.. ++ ++.|+++.++++||+... .
T Consensus 80 ~l~~l~~~~~~-~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~--~P~~~vllD~~g~v~~~~gv~~~----P----- 147 (184)
T TIGR01626 80 LIDAIKAAKFP-PVKYQTTTIINADDAIVGTGMFVKSSAKKGKKE--NPWSQVVLDDKGAVKNAWQLNSE----D----- 147 (184)
T ss_pred HHHHHHHcCCC-cccccceEEEECccchhhHHHHHHHHHHHhccc--CCcceEEECCcchHHHhcCCCCC----C-----
Confidence 34566888995 8 9999996 3444444 4555553 55 999999999999997521 1
Q ss_pred EEEEEEe-CCeEEEEEEec
Q psy5401 77 RYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~ 94 (109)
..+|||| +|+|++..+-.
T Consensus 148 ~T~fVIDk~GkVv~~~~G~ 166 (184)
T TIGR01626 148 SAIIVLDKTGKVKFVKEGA 166 (184)
T ss_pred ceEEEECCCCcEEEEEeCC
Confidence 3558999 99999998764
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.17 E-value=0.00076 Score=45.18 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=51.7
Q ss_pred CcchhHHHcHHHHHhC--CCCEEEEEecCCHHHHHHHHHhcCCCC--ceEEe-ecCCchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAK--GIHEIFCIAVNDAFVMEAWCRKNNAEG--KIRFL-ADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~--Gvd~V~~iS~dd~f~~~aW~~~~~~~~--~i~~l-sD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.+.+.+++++++ ++ +|++||.|..- ..|.+.....+ .+++. +|.+..++++||+. + -.
T Consensus 35 ~~~p~l~~~~~~~~~~~~~~-~vv~is~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~----~P 101 (131)
T cd03009 35 AFTPKLVEFYEKLKESGKNF-EIVFISWDRDE--ESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIE------G----IP 101 (131)
T ss_pred HHhHHHHHHHHHHHhcCCCE-EEEEEECCCCH--HHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCC------C----CC
Confidence 4678899999999875 67 69999998763 45544332111 13332 36667899999874 2 13
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
.++||| +|+|++..
T Consensus 102 ~~~lid~~G~i~~~~ 116 (131)
T cd03009 102 TLIILDADGEVVTTD 116 (131)
T ss_pred EEEEECCCCCEEccc
Confidence 678999 99988654
No 51
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.05 E-value=0.0017 Score=47.28 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=43.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHH-hcCCCCceEEeec--CCch
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCR-KNNAEGKIRFLAD--PNLE 56 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~-~~~~~~~i~~lsD--~~~~ 56 (109)
.|+|.+.+.+++|+++|+ +|++++.| +...+++|++ .+++. |++++| -+|.
T Consensus 41 ~q~~~L~~L~~~y~~~gl-~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~--Fpv~~k~dvnG~ 102 (183)
T PRK10606 41 PQYEQLENIQKAWADQGF-VVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT--FPMFSKIEVNGE 102 (183)
T ss_pred HHHHHHHHHHHHHhhCCe-EEEEeeccccccCCCCCHHHHHHHHHHccCCC--ceeEEEEccCCC
Confidence 578999999999999999 79999984 7899999997 67875 999955 4543
No 52
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.02 E-value=0.0024 Score=43.11 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=54.5
Q ss_pred CcchhHHHcHHHHHhC--CCCEEEEEecCC-HHHHHHHHHhcCCCCc-eEEeec--CCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAK--GIHEIFCIAVND-AFVMEAWCRKNNAEGK-IRFLAD--PNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~--Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~-i~~lsD--~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.++++++. ++ +|+.||.|. +-..++|.++++ ... +++ +| ....+++.||+. + -
T Consensus 34 ~~~p~l~~l~~~~~~~~~~v-~vi~Vs~d~~~~~~~~~~~~~~-~~~~~~~-~d~~~~~~~~~~~~v~------~----i 100 (132)
T cd02964 34 AFTPKLVEFYEKLKEEGKNF-EIVFVSRDRSEESFNEYFSEMP-PWLAVPF-EDEELRELLEKQFKVE------G----I 100 (132)
T ss_pred HHHHHHHHHHHHHhhcCCCe-EEEEEecCCCHHHHHHHHhcCC-CeEeecc-CcHHHHHHHHHHcCCC------C----C
Confidence 3578888888888875 78 699999985 457888998886 211 222 34 346788889874 2 1
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
-.++||| +|+|++....
T Consensus 101 Pt~~lid~~G~iv~~~~~ 118 (132)
T cd02964 101 PTLVVLKPDGDVVTTNAR 118 (132)
T ss_pred CEEEEECCCCCEEchhHH
Confidence 3668888 9999876543
No 53
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.99 E-value=0.0034 Score=52.44 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=62.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.+++++..++ +|++|+++ +.-..+.|.+..+.. .++++.|.++++++.||+.. ..
T Consensus 73 ~emP~L~eL~~e~k~~~v-~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~-~~pV~~D~~~~lak~fgV~g----iP----- 141 (521)
T PRK14018 73 SELGETEKWAQDAKFSSA-NLITVASPGFLHEKKDGDFQKWYAGLDYP-KLPVLTDNGGTLAQSLNISV----YP----- 141 (521)
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEecccccccccHHHHHHHHHhCCCc-ccceeccccHHHHHHcCCCC----cC-----
Confidence 468889988888887788 69999873 345677888777664 38999999999999998741 11
Q ss_pred EEEEEEe-CCeEEEEEEec
Q psy5401 77 RYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~ 94 (109)
.++||| +|+|++..+..
T Consensus 142 -Tt~IIDkdGkIV~~~~G~ 159 (521)
T PRK14018 142 -SWAIIGKDGDVQRIVKGS 159 (521)
T ss_pred -eEEEEcCCCeEEEEEeCC
Confidence 557888 99999887753
No 54
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.74 E-value=0.0028 Score=39.93 Aligned_cols=74 Identities=27% Similarity=0.399 Sum_probs=49.2
Q ss_pred CcchhHHHcHHHHH-hCCCCEEEEEecCCH-HHHHHHHHhcCCCC-ceEEeecCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLK-AKGIHEIFCIAVNDA-FVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~-~~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~-~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
..+|.+.+.+++++ ..++ +|+.||.|.- ...+++.+.++... .+++-.|.+.++.+.||+.. .. ..
T Consensus 18 ~~~~~l~~l~~~~~~~~~v-~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~----iP------~~ 86 (95)
T PF13905_consen 18 KELPKLKELYKKYKKKDDV-EFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGING----IP------TL 86 (95)
T ss_dssp HHHHHHHHHHHHHTTTTTE-EEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TS----SS------EE
T ss_pred HHHHHHHHHHHHhCCCCCE-EEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCc----CC------EE
Confidence 35788888888888 6678 7999999964 55666666664432 13444456778999998752 11 34
Q ss_pred EEEe-CCeE
Q psy5401 80 MVVD-DGKI 87 (109)
Q Consensus 80 fiVd-dG~V 87 (109)
+|+| ||+|
T Consensus 87 ~lld~~G~I 95 (95)
T PF13905_consen 87 VLLDPDGKI 95 (95)
T ss_dssp EEEETTSBE
T ss_pred EEECCCCCC
Confidence 7778 9987
No 55
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.52 E-value=0.012 Score=52.73 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=60.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec---C---CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV---N---DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~---d---d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.+++|+++|+ .|++|+. | +.-..++|.++.++. ++.+.|.++++.+.||+. | .
T Consensus 437 ~e~P~L~~l~~~y~~~~~-~vvgV~~~~~D~~~~~~~~~~~~~~~~i~--~pvv~D~~~~~~~~~~V~------~--i-- 503 (1057)
T PLN02919 437 HVLPDLEFLEKKYKDQPF-TVVGVHSAKFDNEKDLEAIRNAVLRYNIS--HPVVNDGDMYLWRELGVS------S--W-- 503 (1057)
T ss_pred hHhHHHHHHHHHcCCCCe-EEEEEecccccccccHHHHHHHHHHhCCC--ccEEECCchHHHHhcCCC------c--c--
Confidence 568999999999999999 6999984 2 344555666777775 889999999999999874 2 1
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
=..+|+| +|+|.+....
T Consensus 504 Pt~ilid~~G~iv~~~~G 521 (1057)
T PLN02919 504 PTFAVVSPNGKLIAQLSG 521 (1057)
T ss_pred ceEEEECCCCeEEEEEec
Confidence 1568888 9999887543
No 56
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=94.62 E-value=0.11 Score=37.96 Aligned_cols=68 Identities=9% Similarity=0.006 Sum_probs=44.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
+++|.+.+.++++ |+ +|++||.|..- .. .|+.+-| ..+.+.+.||.... + -=.+|+
T Consensus 86 ~e~P~L~~l~~~~---g~-~Vi~Vs~D~~~---------~~--~fPv~~dd~~~~~~~~~g~~~~----~----iPttfL 142 (181)
T PRK13728 86 QFDPVLKQLAQQY---GF-SVFPYTLDGQG---------DT--AFPEALPAPPDVMQTFFPNIPV----A----TPTTFL 142 (181)
T ss_pred HHHHHHHHHHHHc---CC-EEEEEEeCCCC---------CC--CCceEecCchhHHHHHhCCCCC----C----CCeEEE
Confidence 3456666655554 78 79999998542 12 3888875 67788889985211 1 116799
Q ss_pred Ee-CCeEEE-EEEe
Q psy5401 82 VD-DGKITQ-LNIE 93 (109)
Q Consensus 82 Vd-dG~V~~-~~v~ 93 (109)
|| +|+|.+ +.+.
T Consensus 143 Id~~G~i~~~~~~G 156 (181)
T PRK13728 143 VNVNTLEALPLLQG 156 (181)
T ss_pred EeCCCcEEEEEEEC
Confidence 99 999865 4443
No 57
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=93.94 E-value=0.29 Score=34.85 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=51.4
Q ss_pred HHHcHHHHHhC--CCCEEEEEecC----CHHHHHHHHHhcCCCC-ceEEeecCCchHhHhhCCcccccc----CC-c-ee
Q psy5401 8 YLAKEKDLKAK--GIHEIFCIAVN----DAFVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVEHEIPV----LG-G-WR 74 (109)
Q Consensus 8 f~~~~~~f~~~--Gvd~V~~iS~d----d~f~~~aW~~~~~~~~-~i~~lsD~~~~~~k~~G~~~~~~~----~G-g-~r 74 (109)
+.+..+++.+. .+ +++.||.| +|.++++|++..+..- ......+.-.+++++|++...... .+ + ..
T Consensus 75 l~~~~~~l~~~~~~v-~~v~ISvDP~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~ 153 (174)
T PF02630_consen 75 LSQLQKQLGEEGKDV-QFVFISVDPERDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQID 153 (174)
T ss_dssp HHHHHHHHHHTTTTE-EEEEEESSTTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEE
T ss_pred HHHHHHHhhhccCce-EEEEEEeCCCCCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEe
Confidence 44455566543 56 79999976 6999999999988641 123333445678899997643210 11 1 11
Q ss_pred EeEEEEEEe-CCeEEEEE
Q psy5401 75 SKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~ 91 (109)
-.-..++|| +|+|+..+
T Consensus 154 Hs~~~~Lidp~G~i~~~y 171 (174)
T PF02630_consen 154 HSAFIYLIDPDGRIRAIY 171 (174)
T ss_dssp ESSEEEEE-TTSEEEEEE
T ss_pred cccEEEEEcCCCcEEEEE
Confidence 223567888 99998765
No 58
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=92.82 E-value=1.7 Score=32.64 Aligned_cols=78 Identities=13% Similarity=0.136 Sum_probs=62.5
Q ss_pred HcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEE
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQ 89 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~ 89 (109)
..+.-|.+.++ ..+.||.-..-...+|++..|-. ++++|-....|...||+..+... .+..=.+|+=|+|.|-+
T Consensus 97 g~l~hL~~rd~-tfa~vSraP~~~i~afk~rmGW~--~pw~Ss~gs~Fn~D~~~~~~~~~---~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 97 GALRHLHARDT-TFAVVSRAPLEKIEAFKRRMGWT--FPWYSSYGSDFNYDFGVSFDEGG---EMPGLSVFLRDGGRVFH 170 (211)
T ss_pred hhHHHHHhCCc-eEEEEeCCCHHHHHHHHHhcCCC--ceEEEcCCCcccccccceeccCC---CceeEEEEEEcCCEEEE
Confidence 44566788899 69999999999999999999986 99999999999999999776421 12223667778899877
Q ss_pred EEEe
Q psy5401 90 LNIE 93 (109)
Q Consensus 90 ~~v~ 93 (109)
-+-.
T Consensus 171 Tyst 174 (211)
T PF05988_consen 171 TYST 174 (211)
T ss_pred Eeec
Confidence 6654
No 59
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=89.18 E-value=1.4 Score=32.06 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=35.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
-|...+-+.+++++|+ .++.+|.|+..=.+.|++.+++.
T Consensus 48 tpe~~~W~~e~k~~gi-~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 48 TPELRAWLAELKEAGI-KVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CHHHHHHHHHHHhcCC-EEEEEeCCCHHHHHhhhhhcCCc
Confidence 4777888999999999 79999999999999999988864
No 60
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=88.43 E-value=1.4 Score=27.80 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=33.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++++++.|+ .|+.+|........+|.+..++
T Consensus 26 ~~~~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGI-KLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCchHHHHHHHHHHcCC
Confidence 4677888899999999 6999999999999999999886
No 61
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=81.85 E-value=1.3 Score=33.85 Aligned_cols=49 Identities=22% Similarity=0.300 Sum_probs=35.8
Q ss_pred eEEeec-CCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEEecCCCceeeeccccc
Q psy5401 47 IRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107 (109)
Q Consensus 47 i~~lsD-~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v~~~~~~~~~s~a~~v 107 (109)
++++-| -+..+.++||...+ |- +||.||+|.|..-- .|-++..+..++.
T Consensus 183 ~pi~vD~mdN~~~~~YgA~Pe----------Rl-yIi~~gkv~Y~Gg~-GP~~y~~~e~r~~ 232 (237)
T PF00837_consen 183 CPIVVDTMDNNFNKAYGALPE----------RL-YIIQDGKVVYKGGP-GPFGYSPEELREW 232 (237)
T ss_pred CCEEEEccCCHHHHHhCCCcc----------eE-EEEECCEEEEeCCC-CCCcCCHHHHHHH
Confidence 788888 69999999998643 43 68899999999763 5556655544443
No 62
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=81.67 E-value=2.1 Score=30.83 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=28.5
Q ss_pred EEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEE
Q psy5401 48 RFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 48 ~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v 92 (109)
.|+-|.+|.+.++.+|..+ + + ..+|+| +|+|+|+.-
T Consensus 106 ~~vlD~~G~~~~aW~L~~~----~---S--aiiVlDK~G~V~F~k~ 142 (160)
T PF09695_consen 106 QFVLDSNGVVRKAWQLQEE----S---S--AIIVLDKQGKVQFVKE 142 (160)
T ss_pred EEEEcCCCceeccccCCCC----C---c--eEEEEcCCccEEEEEC
Confidence 6999999999999998643 1 2 456778 999999853
No 63
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=80.46 E-value=6.2 Score=25.94 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=31.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 55 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~ 55 (109)
+-+...+.++..+++|+ .|++|+.+.+ +..++.+.+.. .+++=+|..+
T Consensus 55 ~t~e~i~~~~~a~~~g~-~iI~IT~~~~--l~~~~~~~~~~-~~~~p~~~~~ 102 (119)
T cd05017 55 NTEETLSAVEQAKERGA-KIVAITSGGK--LLEMAREHGVP-VIIIPKGLQP 102 (119)
T ss_pred CCHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHcCCc-EEECCCCCCC
Confidence 34566777788888888 6888887775 66677766543 1444444333
No 64
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=79.04 E-value=23 Score=26.02 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=52.6
Q ss_pred hhHHHcHHHHH-hCCCC-EEEEEecC----CHHHHHHHHHhcCCCCceEEeec---CCchHhHhhCCccc---cccC-Cc
Q psy5401 6 PGYLAKEKDLK-AKGIH-EIFCIAVN----DAFVMEAWCRKNNAEGKIRFLAD---PNLEFTKKLGVEHE---IPVL-GG 72 (109)
Q Consensus 6 p~f~~~~~~f~-~~Gvd-~V~~iS~d----d~f~~~aW~~~~~~~~~i~~lsD---~~~~~~k~~G~~~~---~~~~-Gg 72 (109)
..+.+..+++. ..+.+ +++-||+| +|-.++++.+ .+...++..+.- ...+++++|++... .... ..
T Consensus 88 ~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~-~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y 166 (207)
T COG1999 88 AELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE-LNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNY 166 (207)
T ss_pred HHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc-ccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCc
Confidence 34555666665 33333 68999975 7999999999 444333554443 45688999999742 1110 12
Q ss_pred eeEeE-EEEEEe-CCeEEEEEEe
Q psy5401 73 WRSKR-YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 73 ~r~~R-~~fiVd-dG~V~~~~v~ 93 (109)
.+... ..+++| +|++....-.
T Consensus 167 ~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 167 TIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred eeeeeeEEEEECCCCeEEEEecC
Confidence 23333 345558 9998766544
No 65
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=78.98 E-value=7.1 Score=26.60 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=39.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeecCCchH
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLADPNLEF 57 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD~~~~~ 57 (109)
|++.+.++.+++.|. .++.+|....+....|.+.+++..-+ .+..|.+|.+
T Consensus 76 ~g~~~~l~~l~~~g~-~~~ivS~~~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~ 128 (177)
T TIGR01488 76 PGARELISWLKERGI-DTVIVSGGFDFFVEPVAEKLGIDDVFANRLEFDDNGLL 128 (177)
T ss_pred cCHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcCCchheeeeEEECCCCEE
Confidence 788899999999999 69999999999999999998875311 4445544433
No 66
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=78.59 E-value=11 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=34.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|++.+.++.+++.|+ .++.+|....+....+.+.+|+.
T Consensus 82 ~~g~~e~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 82 RDYAEELVRWLKEKGL-KTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred CccHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhCCC
Confidence 4778888999999999 69999999999999999988875
No 67
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=76.90 E-value=4.3 Score=28.00 Aligned_cols=39 Identities=18% Similarity=0.445 Sum_probs=33.9
Q ss_pred hhHH----HcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 6 PGYL----AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 6 p~f~----~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
|++. +.++++++.|+ .|+.||.+..+..+.+++..++..
T Consensus 88 ~~~~~~~~e~i~~~~~~~~-~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 88 PGFIPDAMELIRELKDNGI-KVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp TTCHTTHHHHHHHHHHTTS-EEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred cCchhhHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcCCCc
Confidence 5666 88888899999 699999999999999999888863
No 68
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=75.75 E-value=11 Score=26.35 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=33.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|. .++.+|...-+..+.|++.+++..
T Consensus 89 ~~~~~~~l~~l~~~g~-~v~ivS~s~~~~v~~~~~~lg~~~ 128 (202)
T TIGR01490 89 YPEARDLIRWHKAEGH-TIVLVSASLTILVKPLARILGIDN 128 (202)
T ss_pred cHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHcCCcc
Confidence 4677788888899999 699999888889999999988854
No 69
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=75.41 E-value=8 Score=31.26 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=42.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC--CchHh
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP--NLEFT 58 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~--~~~~~ 58 (109)
..+..-.+...+|.+.|+| |+=++++|.-.-++..+-..-. ++|+++|- +.+++
T Consensus 39 ~Dv~atv~Qi~~L~~aGce-iVRvav~~~~~a~al~~I~~~~-~iPlvADIHFd~~lA 94 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCE-IVRVAVPDMEAAAALPEIKKQL-PVPLVADIHFDYRLA 94 (360)
T ss_pred hhHHHHHHHHHHHHHcCCC-EEEEccCCHHHHHhHHHHHHcC-CCCEEEecCCCHHHH
Confidence 4556677889999999995 9999999999999998654433 39999994 55444
No 70
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=74.95 E-value=6.8 Score=27.27 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=44.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC------C--chHhHhhCCc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP------N--LEFTKKLGVE 64 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~------~--~~~~k~~G~~ 64 (109)
.|+-.+.+.+|+++|+ .+..+|-|......+.++..|+.+ ..+.++- . ..+.+.++..
T Consensus 129 ~~~~~~~l~~L~~~Gi-~~~i~TGD~~~~a~~~~~~lgi~~-~~v~a~~~~kP~~k~~~~~i~~l~~~ 194 (215)
T PF00702_consen 129 RPGAKEALQELKEAGI-KVAILTGDNESTASAIAKQLGIFD-SIVFARVIGKPEPKIFLRIIKELQVK 194 (215)
T ss_dssp HTTHHHHHHHHHHTTE-EEEEEESSEHHHHHHHHHHTTSCS-EEEEESHETTTHHHHHHHHHHHHTCT
T ss_pred hhhhhhhhhhhhccCc-ceeeeecccccccccccccccccc-ccccccccccccchhHHHHHHHHhcC
Confidence 3667788899999999 799999999999999999999954 3333332 2 4667777653
No 71
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=73.64 E-value=9 Score=27.26 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=34.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|++.+.++.+++.|. .++.+|....+....+.+.+++.
T Consensus 87 ~~g~~~~l~~l~~~g~-~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 87 TEGAEELVKTLKEKGY-KVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCCHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHcCCC
Confidence 5788899999999999 69999999989999999988875
No 72
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=71.96 E-value=7.5 Score=29.68 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=49.5
Q ss_pred cchhHHH-cHHHHHhC---CCCEEEEEecCCHHHHHHHHHhc---C----CCC---ceEEeecC---CchHhHhhCCccc
Q psy5401 4 HLPGYLA-KEKDLKAK---GIHEIFCIAVNDAFVMEAWCRKN---N----AEG---KIRFLADP---NLEFTKKLGVEHE 66 (109)
Q Consensus 4 hlp~f~~-~~~~f~~~---Gvd~V~~iS~dd~f~~~aW~~~~---~----~~~---~i~~lsD~---~~~~~k~~G~~~~ 66 (109)
|+.+|.. -..+|... .+ ++|=|+.-+-+. ++|-... + ++. .-.|+.+. .-.+-+++|+...
T Consensus 138 ~~~sw~~p~~~~~~~~~~~~~-q~v~In~~e~~~-k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~ 215 (252)
T PF05176_consen 138 MVDSWTSPFLEDFLQEPYGRV-QIVEINLIENWL-KSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNS 215 (252)
T ss_pred HHHHHhhHHHHHHhhCCCCce-EEEEEecchHHH-HHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCC
Confidence 4445544 34445433 45 799998887776 4454322 1 111 13566663 4477899998754
Q ss_pred cccCCceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 67 IPVLGGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 67 ~~~~Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
. .| |+|+|| +|+|+|..--
T Consensus 216 ~--~G------YvyLVD~~grIRWagsG 235 (252)
T PF05176_consen 216 Y--VG------YVYLVDPNGRIRWAGSG 235 (252)
T ss_pred C--cC------eEEEECCCCeEEeCccC
Confidence 3 24 999999 9999998654
No 73
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=71.66 E-value=13 Score=26.10 Aligned_cols=25 Identities=8% Similarity=0.337 Sum_probs=18.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
+++|.+.+.++++ |+ .|++||.|+.
T Consensus 67 ~e~P~L~~l~~~~---~~-~Vi~Vs~d~~ 91 (153)
T TIGR02738 67 QFAPVLKRFSQQF---GL-PVYAFSLDGQ 91 (153)
T ss_pred HHHHHHHHHHHHc---CC-cEEEEEeCCC
Confidence 4567777766654 67 6999999874
No 74
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=71.38 E-value=19 Score=23.55 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=31.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC--------HHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND--------AFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd--------~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.|+++|+ .++.+|... ....+++.+.+++.
T Consensus 27 ~~~v~~~l~~L~~~g~-~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGY-KVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4778888999999999 688888877 55677788888875
No 75
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=71.01 E-value=11 Score=30.35 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=40.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 55 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~ 55 (109)
..+.+-.+...+|.+.|+| |+=++++|.-.-++..+-..-- ++|+++|-.-
T Consensus 31 ~Dv~atv~QI~~L~~aGce-iVRvavp~~~~A~al~~I~~~~-~iPlVADIHF 81 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCD-IVRVTVPDRESAAAFEAIKEGT-NVPLVADIHF 81 (346)
T ss_pred hhHHHHHHHHHHHHHcCCC-EEEEcCCCHHHHHhHHHHHhCC-CCCEEEeeCC
Confidence 3456677889999999995 9999999999999998655432 3999999543
No 76
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=68.40 E-value=14 Score=25.91 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=34.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.+..++++|+ .+..+|..+...+..+.+..++.+
T Consensus 87 ~~g~~~~L~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~~ 126 (213)
T TIGR01449 87 FPGVEATLGALRAKGL-RLGLVTNKPTPLARPLLELLGLAK 126 (213)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCcHh
Confidence 5788888899999999 688888888899999999988754
No 77
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=67.80 E-value=8.1 Score=25.77 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=25.5
Q ss_pred HcHHHHHhCCCCEEEEEecCC-------HHHHHHHHHhcCCCC-ceEEeec
Q psy5401 10 AKEKDLKAKGIHEIFCIAVND-------AFVMEAWCRKNNAEG-KIRFLAD 52 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd-------~f~~~aW~~~~~~~~-~i~~lsD 52 (109)
+.+.++++.|+..|||.-.|. ....+++++.+|+.- .+|+-++
T Consensus 18 ~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~ 68 (110)
T PF04273_consen 18 EDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGG 68 (110)
T ss_dssp HHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TT
T ss_pred HHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCC
Confidence 567889999999999999883 234779999999852 1355443
No 78
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=66.70 E-value=25 Score=24.88 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
..|+..+.+..+++.|+ .+..+|.........+.+.+++...|
T Consensus 94 ~~~g~~~~l~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~~~f 136 (226)
T PRK13222 94 LYPGVKETLAALKAAGY-PLAVVTNKPTPFVAPLLEALGIADYF 136 (226)
T ss_pred cCCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCCccCc
Confidence 56888899999999999 68888988888888899888875433
No 79
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=65.42 E-value=15 Score=29.59 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=39.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC--CchHh
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP--NLEFT 58 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~--~~~~~ 58 (109)
+-+=.+...+|...|+| |+=|++++.-.-.|+.+-..-. ++|+++|. +.+++
T Consensus 35 v~aTv~QI~~L~~aG~d-IVRvtv~~~e~A~A~~~Ik~~~-~vPLVaDiHf~~rla 88 (361)
T COG0821 35 VEATVAQIKALERAGCD-IVRVTVPDMEAAEALKEIKQRL-NVPLVADIHFDYRLA 88 (361)
T ss_pred HHHHHHHHHHHHHcCCC-EEEEecCCHHHHHHHHHHHHhC-CCCEEEEeeccHHHH
Confidence 44556788899999996 9999999999999997643322 39999994 44444
No 80
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=64.35 E-value=20 Score=23.59 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=32.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.+.+++++|+ .++++|..++.....-.+.+++.
T Consensus 79 ~~~~~~~L~~l~~~~~-~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 79 YPGVRELLERLKAKGI-PLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp STTHHHHHHHHHHTTS-EEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhhhhhcccccc-eeEEeecCCcccccccccccccc
Confidence 4777888899999999 79999999988777777777765
No 81
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=63.51 E-value=18 Score=27.95 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=37.4
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchH
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 57 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~ 57 (109)
-+.+++++|+ .|+-.|.-+..-|-...+++++++ .+++|...+.+
T Consensus 31 v~~el~d~G~-~Vi~~SSKT~aE~~~l~~~l~v~~-~p~iaEnG~aI 75 (274)
T COG3769 31 VLLELKDAGV-PVILCSSKTRAEMLYLQKSLGVQG-LPLIAENGAAI 75 (274)
T ss_pred HHHHHHHcCC-eEEEeccchHHHHHHHHHhcCCCC-CceeecCCceE
Confidence 4678999999 688889999999999999999976 88888755443
No 82
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=62.13 E-value=26 Score=24.48 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=29.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~ 43 (109)
.|+..+.++++++.|. .++.+|.++ ....+.+.+..++
T Consensus 45 ~pgv~e~L~~Lk~~g~-~l~I~Sn~~~~~~~~~~~~~~gl 83 (170)
T TIGR01668 45 YPALRDWIEELKAAGR-KLLIVSNNAGEQRAKAVEKALGI 83 (170)
T ss_pred ChhHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHcCC
Confidence 4778888999999999 688888887 4555667666665
No 83
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=61.56 E-value=35 Score=24.48 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=33.2
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
-.|++.+.++.+++.|+ .+..+|....+....|.+.++.
T Consensus 71 l~pg~~e~l~~l~~~g~-~~~IvS~~~~~~i~~il~~~~~ 109 (214)
T TIGR03333 71 IREGFREFVAFINEHGI-PFYVISGGMDFFVYPLLEGIVE 109 (214)
T ss_pred ccccHHHHHHHHHHCCC-eEEEECCCcHHHHHHHHHhhCC
Confidence 35888999999999999 6999999998999999887643
No 84
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=61.14 E-value=25 Score=24.59 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=36.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.++.++++|+ .+..+|..+...+....+..|+..- ..+.||
T Consensus 94 ~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~ 142 (198)
T TIGR01428 94 HPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKHAGLDDPFDAVLSAD 142 (198)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHCCChhhhheeEehh
Confidence 4777888899999999 6999998888888888888887432 344455
No 85
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=59.64 E-value=21 Score=28.84 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=36.3
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc------CCCCceEEeec--CCchHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN------NAEGKIRFLAD--PNLEFT 58 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~------~~~~~i~~lsD--~~~~~~ 58 (109)
.+..=.+...+|.+.|+| |+=+++.+.-.-++..+-. |. ++|+++| .+.+++
T Consensus 29 Dv~atv~QI~~L~~aGce-ivRvavp~~~~a~al~~I~~~l~~~g~--~iPlVADIHFd~~lA 88 (359)
T PF04551_consen 29 DVEATVAQIKRLEEAGCE-IVRVAVPDMEAAEALKEIKKRLRALGS--PIPLVADIHFDYRLA 88 (359)
T ss_dssp -HHHHHHHHHHHHHCT-S-EEEEEE-SHHHHHHHHHHHHHHHCTT---SS-EEEEESTTCHHH
T ss_pred cHHHHHHHHHHHHHcCCC-EEEEcCCCHHHHHHHHHHHHhhccCCC--CCCeeeecCCCHHHH
Confidence 345556788899999996 9999999999999887532 33 3999999 455554
No 86
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=58.30 E-value=48 Score=22.25 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCc
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 64 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~ 64 (109)
..++.++++++++ .=+.|.+++.-.+++-++--. +++|+-...-.+++.+|+.
T Consensus 40 L~~~~~~L~~l~A-vGlVVnV~t~~~l~~Lr~lap---gl~l~P~sgddLa~rL~l~ 92 (105)
T TIGR03765 40 LQQNAAALKSLGA-VGLVVNVETAAALQRLRALAP---GLPLLPVSGDDLAERLGLR 92 (105)
T ss_pred HHHHHHHHHHCCC-eEEEEecCCHHHHHHHHHHcC---CCcccCCCHHHHHHHhCCC
Confidence 4578999999999 699999999999998876442 2778888888999999864
No 87
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=58.09 E-value=37 Score=23.12 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=32.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|+ .++.+|.........+.+..++..
T Consensus 74 ~~g~~~ll~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~~ 113 (188)
T TIGR01489 74 DPGFKEFIAFIKEHGI-DFIVISDGNDFFIDPVLEGIGEKD 113 (188)
T ss_pred CccHHHHHHHHHHcCC-cEEEEeCCcHHHHHHHHHHcCChh
Confidence 4677788889999999 588888888888888888887753
No 88
>PLN02954 phosphoserine phosphatase
Probab=57.61 E-value=27 Score=24.85 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=34.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|++.+.++.+++.|+ .+..+|...........+.+++.
T Consensus 86 ~pg~~e~l~~l~~~g~-~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 86 SPGIPELVKKLRARGT-DVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred CccHHHHHHHHHHCCC-EEEEECCCcHHHHHHHHHHhCCC
Confidence 4889999999999999 69999999989999999998875
No 89
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=56.81 E-value=45 Score=23.61 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=34.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.++++|+ .+..+|.+.........+..++..
T Consensus 84 ~~g~~~~l~~L~~~g~-~~~i~S~~~~~~~~~~l~~~gl~~ 123 (214)
T PRK13288 84 YETVYETLKTLKKQGY-KLGIVTTKMRDTVEMGLKLTGLDE 123 (214)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCChh
Confidence 5788899999999999 688888888888888888888764
No 90
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=56.38 E-value=50 Score=23.48 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=34.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+|...+.+.+++++|+ .++.+|..++...+.+.+.+++.
T Consensus 18 ~~~~~~~l~~l~~~gi-~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 18 WQPAAPWLTRLQEAGI-PVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred cHHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCC
Confidence 5667788999999999 69999999999999999988864
No 91
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=56.16 E-value=42 Score=25.50 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=36.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEE
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF 49 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~ 49 (109)
.|+..+.++.++++|+ .+..+|.........+.+..++..-|..
T Consensus 144 ~pg~~e~L~~L~~~gi-~laIvSn~~~~~~~~~L~~~gl~~~F~~ 187 (273)
T PRK13225 144 FPGVADLLAQLRSRSL-CLGILSSNSRQNIEAFLQRQGLRSLFSV 187 (273)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCChhheEE
Confidence 5888899999999999 6888899899999999898988654543
No 92
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=55.60 E-value=18 Score=23.34 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=28.1
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
+-+|+=.+-++.++++|. .++.+|.|+........+.+
T Consensus 14 ~~ipga~e~l~~L~~~g~-~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGK-PVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EE-TTHHHHHHHHHHTTS-EEEEEES-SSS-HHHHHHHH
T ss_pred CcCcCHHHHHHHHHHcCC-CEEEEeCCCCCCHHHHHHHH
Confidence 347888899999999999 79999999977766665443
No 93
>PF09048 Cro: Cro; InterPro: IPR000655 Bacteriophage lambda encodes two repressors: the Cro repressor that acts to turn off early gene transcription during the lytic cycle, and the lambda or cI repressor that is required to maintain lysogenic growth. Together the Cro and cI repressors form a helix-turn-helix (HTH) superfamily. The lambda Cro repressor binds to DNA as a highly flexible dimer. The crystal structure of the lambda Cro repressor [] reveals a HTH DNA-binding protein with an alpha/beta fold that differs from other Cro family members, possibly by an evolutionary fold change []. Most Cro proteins, such as Enterobacteria phage P22 Cro and Bacteriophage 434 Cro, have an all-alpha structure that is thought to be ancestral to lambda Cro, where the fourth and fifth helices are replaced by a beta-sheet, possibly as a result of secondary structure switching rather than by nonhomologous replacement []. This entry represents the lambda-type Cro repressor with an alpha/beta topology.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 5CRO_A 2ECS_A 2OVG_A 6CRO_A 1D1L_A 2ORC_A 1D1M_B 3ORC_A 1ORC_A 2A63_A ....
Probab=54.70 E-value=11 Score=22.82 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=27.7
Q ss_pred CchHhHhhCCcccc-ccCCceeEeEEEEEE-e-CCeEEEEEEecCC
Q psy5401 54 NLEFTKKLGVEHEI-PVLGGWRSKRYSMVV-D-DGKITQLNIEPDG 96 (109)
Q Consensus 54 ~~~~~k~~G~~~~~-~~~Gg~r~~R~~fiV-d-dG~V~~~~v~~~~ 96 (109)
..+.++++|+.... +. -.|+.|-.||. . ||.+...++-+=|
T Consensus 15 Q~kaA~~lGV~Q~AIsK--Alr~gR~I~v~~~~dGs~~A~EirpFP 58 (59)
T PF09048_consen 15 QAKAARALGVTQSAISK--ALRAGRNIFVTIMPDGSVEAEEIRPFP 58 (59)
T ss_dssp HHHHHHHHTS-HHHHHH--HHHCT-EEEEEEETTSEEEEEEEEESS
T ss_pred hHHHHHHcCCcHHHHHH--HHHcCCcEEEEEcCCCeEEEEEecCCC
Confidence 34678888987543 11 24788999998 3 9999998886533
No 94
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=54.58 E-value=61 Score=22.82 Aligned_cols=53 Identities=13% Similarity=0.231 Sum_probs=44.0
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCc
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 64 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~ 64 (109)
+.++.++|+++|+ .=+.|.+++.-.+++-++.-. +++|+-.....+++.+|+.
T Consensus 78 L~~~~~~L~~l~A-vGlVVNV~t~~~L~~Lr~lap---gl~l~P~sgddLA~rL~l~ 130 (142)
T PF11072_consen 78 LQQNAEELKQLGA-VGLVVNVATEAALQRLRQLAP---GLPLLPVSGDDLARRLGLS 130 (142)
T ss_pred HHHHHHHHHHCCC-eEEEEecCCHHHHHHHHHHcC---CCeecCCCHHHHHHHhCCC
Confidence 4578899999999 699999999999998876442 2788888888999999874
No 95
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=53.53 E-value=34 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.056 Sum_probs=31.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.+++++++|+ .+..+|..+........+..++..
T Consensus 96 ~~g~~~~L~~L~~~g~-~~~i~Tn~~~~~~~~~l~~~~l~~ 135 (221)
T TIGR02253 96 YPGVRDTLMELRESGY-RLGIITDGLPVKQWEKLERLGVRD 135 (221)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHhCChHH
Confidence 4677888899999999 688888887777777777777753
No 96
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=53.51 E-value=13 Score=26.06 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=19.4
Q ss_pred eCCeEEEEEEecCCCceeeeccccc
Q psy5401 83 DDGKITQLNIEPDGTGLTCSLVDEL 107 (109)
Q Consensus 83 ddG~V~~~~v~~~~~~~~~s~a~~v 107 (109)
.||+|+|+-+...+.|...-+.|.|
T Consensus 48 ~DgvVRY~lv~~S~~Ga~NvsyEGi 72 (139)
T PF08750_consen 48 PDGVVRYTLVVRSPSGARNVSYEGI 72 (139)
T ss_pred CCCcEEEEEEEcCCCCcccceEEeE
Confidence 4899999988887777777666665
No 97
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=52.32 E-value=29 Score=25.25 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=25.3
Q ss_pred eEEeecCCchHhH-hhCCccccccCCceeEeEEEEEEe-CCeEEEEE
Q psy5401 47 IRFLADPNLEFTK-KLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 47 i~~lsD~~~~~~k-~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~ 91 (109)
-.|+-|.+| .+| +.++..+ + -++.+.| +|+|+++.
T Consensus 127 Sq~vlD~~g-vak~AWqL~e~----~-----SaivVlDk~G~Vkfvk 163 (184)
T COG3054 127 SQFVLDSNG-VAKNAWQLKEE----S-----SAVVVLDKDGRVKFVK 163 (184)
T ss_pred eeeEEccch-hhhhhhccccc----c-----ceEEEEcCCCcEEEEe
Confidence 478999999 666 8888643 1 1445558 99999884
No 98
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=52.06 E-value=45 Score=23.81 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=34.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.+..++++|+ .+..+|..+......+.+..++.+
T Consensus 94 ~~g~~~~l~~l~~~g~-~~~i~S~~~~~~~~~~l~~~~l~~ 133 (222)
T PRK10826 94 LPGVREALALCKAQGL-KIGLASASPLHMLEAVLTMFDLRD 133 (222)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCcHHHHHHHHHhCcchh
Confidence 4677888888999999 699999999999999998888754
No 99
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=50.59 E-value=47 Score=22.42 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=31.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEe-----cCCHHHHHHHHHhcCCCCceEEeecC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIA-----VNDAFVMEAWCRKNNAEGKIRFLADP 53 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS-----~dd~f~~~aW~~~~~~~~~i~~lsD~ 53 (109)
=|+|.+.++..++..+|.|++-+ .|........++..|+. +..+.++
T Consensus 48 Rp~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~~~l~~~gv~--l~~~~~~ 99 (134)
T cd03769 48 RKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLEELFKAYGVE--IVVINQE 99 (134)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHHHHHHHCCCE--EEEEeCC
Confidence 38999999998887777666633 33444444556666664 7777764
No 100
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=49.98 E-value=52 Score=21.81 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=27.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNN 42 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~ 42 (109)
.|+..+.++++++.|+ .+..+|.. .+.....-.+..+
T Consensus 31 ~~gv~e~L~~Lk~~g~-~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGF-LLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred HHHHHHHHHHHHHCCe-EEEEEeCCCCHHHHHHHHHhcc
Confidence 5788899999999999 68878877 5665555444444
No 101
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=49.27 E-value=65 Score=23.25 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=37.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
...|+..+.+.+++++|+ ....+|.+.......-.+.+++..
T Consensus 89 ~~~~gv~e~L~~L~~~g~-~l~i~T~k~~~~~~~~l~~~gl~~ 130 (220)
T COG0546 89 RLFPGVKELLAALKSAGY-KLGIVTNKPERELDILLKALGLAD 130 (220)
T ss_pred ccCCCHHHHHHHHHhCCC-eEEEEeCCcHHHHHHHHHHhCCcc
Confidence 468999999999999999 699999999999999999898865
No 102
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=49.26 E-value=31 Score=21.32 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=29.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
||.|++++ .+.|++.++.+..++-.-..+|.+....
T Consensus 7 L~~wl~~~---~~lG~d~i~i~d~~s~D~t~~~l~~~~~ 42 (97)
T PF13704_consen 7 LPEWLAHH---LALGVDHIYIYDDGSTDGTREILRALPG 42 (97)
T ss_pred HHHHHHHH---HHcCCCEEEEEECCCCccHHHHHHhCCC
Confidence 67888887 4679999999998887778888887744
No 103
>PHA02762 hypothetical protein; Provisional
Probab=48.32 E-value=14 Score=22.14 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.6
Q ss_pred EEEe-CCeEEEEEEecCC
Q psy5401 80 MVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 80 fiVd-dG~V~~~~v~~~~ 96 (109)
.=|| +|+|.|+.+||..
T Consensus 32 igide~g~iayisiep~d 49 (62)
T PHA02762 32 IGIDENDKISYISIEPLD 49 (62)
T ss_pred EeECCCCcEEEEEecccc
Confidence 3357 9999999999854
No 104
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=47.15 E-value=29 Score=30.31 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=34.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+.+++|+++|+ +++-+|-|.+-.-+++++..|+.
T Consensus 571 ~~a~~~i~~L~~~gi-~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 571 ADARQAISELKALGI-KGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred hhHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCC
Confidence 566778889999999 69999999999999999999985
No 105
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=45.84 E-value=60 Score=21.85 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.+..++++|+ .+..+|..+... .......++..
T Consensus 87 ~~g~~~~l~~l~~~g~-~~~i~Tn~~~~~-~~~~~~~~l~~ 125 (183)
T TIGR01509 87 LPGVEPLLEALRARGK-KLALLTNSPRDH-AVLVQELGLRD 125 (183)
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCCchHH-HHHHHhcCCHH
Confidence 4788888899999999 577666666555 44444467643
No 106
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=45.69 E-value=47 Score=23.86 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=31.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
.|++.+.++.+++.|+ .++.+|....+...++.+.+
T Consensus 76 ~pG~~e~l~~l~~~g~-~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 76 REGFHEFVQFVKENNI-PFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred CcCHHHHHHHHHHcCC-eEEEECCCcHHHHHHHHHHh
Confidence 5888999999999999 69999988888888888776
No 107
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=45.68 E-value=75 Score=23.06 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=29.9
Q ss_pred chhHHHcHH-HHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEK-DLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~-~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++ .+++.|. .++.||.-..+..+.+++..+.
T Consensus 96 ~pga~e~L~~~l~~~G~-~v~IvSas~~~~~~~ia~~~~~ 134 (210)
T TIGR01545 96 FPLVAERLRQYLESSDA-DIWLITGSPQPLVEAVYFDSNF 134 (210)
T ss_pred CccHHHHHHHHHHhCCC-EEEEEcCCcHHHHHHHHHhccc
Confidence 377888885 6777899 5888888888889999987544
No 108
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=45.28 E-value=65 Score=23.32 Aligned_cols=42 Identities=10% Similarity=0.039 Sum_probs=31.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
.|+..+.++.+++.|+ .+..+|.++........+..++...|
T Consensus 97 ~pg~~~~L~~L~~~g~-~l~i~Tn~~~~~~~~~l~~~~l~~~f 138 (229)
T PRK13226 97 FDGVEGMLQRLECAGC-VWGIVTNKPEYLARLILPQLGWEQRC 138 (229)
T ss_pred CCCHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCchhcc
Confidence 5677788889999999 57777777777777777878775434
No 109
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=44.86 E-value=19 Score=22.46 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred HHHHhCCCCEEEEEecCCHHHHHHHHHhcC
Q psy5401 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 42 (109)
Q Consensus 13 ~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~ 42 (109)
.+|++.+--+|+|+=.|=.-+++||+.+-.
T Consensus 18 ~~f~d~~~~diVG~fp~y~~A~~aWrakAq 47 (69)
T PF13773_consen 18 TEFKDLDALDIVGIFPDYASAYAAWRAKAQ 47 (69)
T ss_pred ceecCCCcceEEecCCChHHHHHHHHHHHh
Confidence 356664444799999999999999986543
No 110
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=44.46 E-value=87 Score=24.34 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=33.8
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFT 58 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~ 58 (109)
.-+.-.+.++.++++|+ .|++|+.+++ +..+++..+.. .+.+=++..+.++
T Consensus 90 ~T~e~~~a~~~a~~~ga-~vIaIT~~~~--L~~~a~~~~~~-~i~ip~~~~~r~s 140 (337)
T PRK08674 90 NTEETLSAVEQALKRGA-KIIAITSGGK--LKEMAKEHGLP-VIIVPGGYQPRAA 140 (337)
T ss_pred CCHHHHHHHHHHHHCCC-eEEEECCCch--HHHHHHhcCCe-EEEeCCCCcchhh
Confidence 34556677888899999 7999998876 77788776543 1333333334444
No 111
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=44.13 E-value=58 Score=21.56 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=31.6
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
..|+..+.++.+++.|+ .+..+|..+......+.+..
T Consensus 65 ~~~g~~e~l~~L~~~g~-~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 65 YIRGAADLLKRLKEAGI-KLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred eccCHHHHHHHHHHCcC-eEEEEeCCchHHHHHHHHHH
Confidence 45788889999999999 69999999988888888775
No 112
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=43.68 E-value=63 Score=22.84 Aligned_cols=39 Identities=23% Similarity=0.187 Sum_probs=31.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|......+....+.+++.
T Consensus 89 ~~G~~~~L~~L~~~g~-~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 89 LPGAEEAFRSLRSSGI-KVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHhhhh
Confidence 4677888899999999 68888888888888887877765
No 113
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=43.41 E-value=56 Score=27.47 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=33.7
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+..+..+++++.|+ ++..+|.|....-++.++.+|+.
T Consensus 408 ~~a~e~i~~Lk~~Gi-~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 408 PEAKEVIQALKRRGI-EPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHHHcCC-eEEEEcCCCHHHHHHHHHHcCCc
Confidence 667778899999999 69999999999999999999874
No 114
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=42.75 E-value=72 Score=18.94 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=21.5
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCC
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAE 44 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~ 44 (109)
++.....+++....+++.|-+|++-+ ..+|++.+|..
T Consensus 13 ~i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~ 52 (69)
T cd03423 13 VMMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHE 52 (69)
T ss_pred HHHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCE
Confidence 34555666655443455555555443 56888877764
No 115
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=42.57 E-value=36 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
.+.|.+.+.++++.+.|+.+|+.+|.
T Consensus 53 ~~~p~~~eaL~~l~~~G~~~V~V~Pl 78 (127)
T cd03412 53 IEVDTPEEALAKLAADGYTEVIVQSL 78 (127)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEeC
Confidence 35799999999999999999988876
No 116
>PRK10200 putative racemase; Provisional
Probab=42.47 E-value=57 Score=24.19 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=26.4
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHH
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME 35 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~ 35 (109)
-.|.+.+..+.|++.|++ .++|.-|++...-
T Consensus 60 ~~~~l~~~~~~L~~~g~~-~iviaCNTah~~~ 90 (230)
T PRK10200 60 TGDILAEAALGLQRAGAE-GIVLCTNTMHKVA 90 (230)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEECCchHHHHH
Confidence 457788889999999996 9999999988763
No 117
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=42.45 E-value=71 Score=23.49 Aligned_cols=47 Identities=11% Similarity=0.054 Sum_probs=36.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD 52 (109)
.|+..+.++.+++.|+ .+..+|..........-+..++..-| .+-+|
T Consensus 110 ~pgv~e~L~~L~~~g~-~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~ 158 (248)
T PLN02770 110 LNGLYKLKKWIEDRGL-KRAAVTNAPRENAELMISLLGLSDFFQAVIIGS 158 (248)
T ss_pred CccHHHHHHHHHHcCC-eEEEEeCCCHHHHHHHHHHcCChhhCcEEEecC
Confidence 5788889999999999 58888887888888888888875423 34454
No 118
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=42.21 E-value=88 Score=21.91 Aligned_cols=40 Identities=13% Similarity=0.066 Sum_probs=29.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|+ .+..+|..+.-......+..++.+
T Consensus 77 ~~g~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~~~l~~ 116 (205)
T TIGR01454 77 FPGVPELLAELRADGV-GTAIATGKSGPRARSLLEALGLLP 116 (205)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHcCChh
Confidence 5788888999999999 577777766665666666777643
No 119
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=42.21 E-value=78 Score=22.90 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=33.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 57 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~ 57 (109)
++.+.+.++.+++.|+| +|-+.++.+.....+... . +++.+|+.-.+
T Consensus 1 ~~~~~~~l~~l~~~g~d---gi~v~~~g~~~~~k~~~~-~--~~i~~~~~~nv 47 (233)
T PF01136_consen 1 LEELEKYLDKLKELGVD---GILVSNPGLLELLKELGP-D--LKIIADYSLNV 47 (233)
T ss_pred ChHHHHHHHHHHhCCCC---EEEEcCHHHHHHHHHhCC-C--CcEEEecCccC
Confidence 46778888899999998 566778888877665432 2 66777755433
No 120
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=41.97 E-value=38 Score=25.54 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=21.5
Q ss_pred hhHHHcHHHHH-hCCCCEEEEEecCCHH
Q psy5401 6 PGYLAKEKDLK-AKGIHEIFCIAVNDAF 32 (109)
Q Consensus 6 p~f~~~~~~f~-~~Gvd~V~~iS~dd~f 32 (109)
+...+..+.|. +.|+| .++|.-|++.
T Consensus 47 ~~~~~~~~~L~~~~g~d-~ivIaCNTA~ 73 (251)
T TIGR00067 47 EYVLELLTFLKERHNIK-LLVVACNTAS 73 (251)
T ss_pred HHHHHHHHHHHHhCCCC-EEEEeCchHH
Confidence 44567788998 99996 9999999985
No 121
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=41.90 E-value=72 Score=23.15 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=34.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.++.|+++|+ .+..+|.........-.+..++..- ..+.||
T Consensus 95 ~~g~~e~L~~Lk~~g~-~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~ 143 (224)
T PRK14988 95 REDTVPFLEALKASGK-RRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTH 143 (224)
T ss_pred CCCHHHHHHHHHhCCC-eEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEee
Confidence 5888999999999999 5777777777777776677776432 344555
No 122
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=41.30 E-value=77 Score=18.85 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=21.1
Q ss_pred HHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCC
Q psy5401 9 LAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAE 44 (109)
Q Consensus 9 ~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~ 44 (109)
+...+++++....+++.|-+|++-+ ..+|++.+|..
T Consensus 14 l~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~ 52 (69)
T cd03420 14 LKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNT 52 (69)
T ss_pred HHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCE
Confidence 4445566655444455555555544 46888887764
No 123
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=41.14 E-value=37 Score=21.05 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=16.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
-|...+.++++++.|++.|+++..
T Consensus 44 ~P~i~~~l~~l~~~g~~~vvvvPl 67 (101)
T cd03409 44 GPDTEEAIRELAEEGYQRVVIVPL 67 (101)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeC
Confidence 366666777777777777776654
No 124
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=41.11 E-value=58 Score=19.09 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=22.0
Q ss_pred HHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCCCceEEeec
Q psy5401 9 LAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAEGKIRFLAD 52 (109)
Q Consensus 9 ~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~~~i~~lsD 52 (109)
+.-...|+++...+++-|=+|++.+ ..+|++.+|.. +.-+.+
T Consensus 15 l~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~--~~~~~~ 59 (70)
T PF01206_consen 15 LKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYE--VVEVEE 59 (70)
T ss_dssp HHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEE--EEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCE--EEEEEE
Confidence 3445556654333344444444433 67888888763 444444
No 125
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=41.08 E-value=67 Score=21.97 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.3
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
-+++|++.|+ .+..+|.+.........+.+++.
T Consensus 36 ~i~~Lk~~G~-~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 36 GIRCALKSGI-EVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred HHHHHHHCCC-EEEEEECCCCHHHHHHHHHcCCC
Confidence 4788899999 58778877777778888888875
No 126
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=40.09 E-value=69 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=32.9
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+..+++++.|+ +++-+|-|.+..-.+.++..|+.
T Consensus 449 p~a~eaI~~l~~~Gi-~v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 449 GGIKERFAQLRKMGI-KTIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred hHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCC
Confidence 455677888999999 69999999999999999999984
No 127
>KOG2944|consensus
Probab=40.05 E-value=64 Score=23.44 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=15.0
Q ss_pred CCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 19 GIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 19 Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
|- .=|||+|+|..+.=.=-++.|+
T Consensus 115 Gf-gHIci~V~di~sac~~lkekGV 138 (170)
T KOG2944|consen 115 GF-GHICIEVDDINSACERLKEKGV 138 (170)
T ss_pred cc-ceEEEEeCCHHHHHHHHHHhCc
Confidence 55 3688999887665444444444
No 128
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=38.80 E-value=71 Score=26.63 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=41.4
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce-EEeecCCchHhHhhC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI-RFLADPNLEFTKKLG 62 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i-~~lsD~~~~~~k~~G 62 (109)
|+-.+.+++++++|++++..+|.|.....++.++.+|+..-+ ....+...++.+.++
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~~f~~~~p~~K~~~i~~l~ 422 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDEVHAELLPEDKLEIVKELR 422 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChhhhhccCcHHHHHHHHHHH
Confidence 677788999999999449999999999999999999985312 222333344444443
No 129
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=38.06 E-value=31 Score=20.37 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=15.3
Q ss_pred eEeEEEEEEe-CCeEEEEE
Q psy5401 74 RSKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 74 r~~R~~fiVd-dG~V~~~~ 91 (109)
|..|-.+.+| +|+|+.+.
T Consensus 40 r~dRLnv~~D~~g~I~~v~ 58 (60)
T PF11720_consen 40 RPDRLNVEVDDDGVITRVR 58 (60)
T ss_pred CCCcEEEEECCCCcEEEEe
Confidence 6779999999 99998764
No 130
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=37.84 E-value=33 Score=20.64 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=12.1
Q ss_pred EEEEEe-CCeEEEEEE
Q psy5401 78 YSMVVD-DGKITQLNI 92 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v 92 (109)
.++++| +|+|.|++-
T Consensus 13 ~i~~~d~~g~I~~~N~ 28 (113)
T PF00989_consen 13 GIFVIDEDGRILYVNQ 28 (113)
T ss_dssp EEEEEETTSBEEEECH
T ss_pred eEEEEeCcCeEEEECH
Confidence 568888 999999853
No 131
>KOG4498|consensus
Probab=37.82 E-value=1.1e+02 Score=22.73 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=52.8
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccc---------------------
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHE--------------------- 66 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~--------------------- 66 (109)
+.+..+=++++|| ..+.|-.-+.--...+.+.....+ .+.-|++.++-+.++....
T Consensus 73 La~l~~~ld~~Gv-~Li~vg~g~~~~~~~f~~q~~f~g--evylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~~~gv 149 (197)
T KOG4498|consen 73 LASLKDLLDELGV-VLIAVGPGSHVQFEDFWDQTYFSG--EVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAKAVGV 149 (197)
T ss_pred HHHHHHHHHHhCC-EEEEEeccceeecchhhcccCcce--eEEEcCccceechhhhhcccccccccccHHHHHHHhhccc
Confidence 4444444568899 577776655555555555444432 5666777766655544321
Q ss_pred -cccCCceeEeEEEEEEe-CCeEEEEEEecCCCc
Q psy5401 67 -IPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 98 (109)
Q Consensus 67 -~~~~Gg~r~~R~~fiVd-dG~V~~~~v~~~~~~ 98 (109)
-+.-|..+..|..++|- .|+|-+..++.+.+|
T Consensus 150 ~gn~~gd~~~~gG~~~V~~G~~il~~h~dk~~gD 183 (197)
T KOG4498|consen 150 EGNLEGDGLLSGGVLVVGRGKKILFIHVDKETGD 183 (197)
T ss_pred CCCcccChHHhCCeEEEecCCeEEEEEecCCCCC
Confidence 00112235668899998 559999999976654
No 132
>TIGR00035 asp_race aspartate racemase.
Probab=37.38 E-value=71 Score=23.38 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=33.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHH-HhcCCCCceEEe--ecCCchHhHhhC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWC-RKNNAEGKIRFL--ADPNLEFTKKLG 62 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~-~~~~~~~~i~~l--sD~~~~~~k~~G 62 (109)
.|...+..+.|++.|+| .++++.|++...-..- +..+ +|++ .|+..+..+..|
T Consensus 61 ~~~l~~~~~~L~~~g~d-~iviaCNTah~~~~~l~~~~~----iPii~i~~~~~~~~~~~~ 116 (229)
T TIGR00035 61 RPILIDIAVKLENAGAD-FIIMPCNTAHKFAEDIQKAIG----IPLISMIEETAEAVKEDG 116 (229)
T ss_pred HHHHHHHHHHHHHcCCC-EEEECCccHHHHHHHHHHhCC----CCEechHHHHHHHHHHcC
Confidence 45667788888899996 9999999876643332 3233 4444 355544444443
No 133
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=36.91 E-value=73 Score=23.24 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=30.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
+|+..+.++.++++|+ .+..+|..+.-......+..++.+
T Consensus 101 ~pg~~e~L~~L~~~g~-~l~IvT~~~~~~~~~~l~~~gl~~ 140 (253)
T TIGR01422 101 IPGVIEVIAYLRARGI-KIGSTTGYTREMMDVVAPEAALQG 140 (253)
T ss_pred CCCHHHHHHHHHHCCC-eEEEECCCcHHHHHHHHHHHHhcC
Confidence 5778888999999999 577777777666677777666543
No 134
>PLN02367 lactoylglutathione lyase
Probab=36.67 E-value=1.9e+02 Score=21.96 Aligned_cols=52 Identities=25% Similarity=0.412 Sum_probs=34.1
Q ss_pred CCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEE
Q psy5401 18 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 18 ~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~ 91 (109)
.|. .-+|++++|....-+..+..|.. ++..+. .| ...|.+||-| ||...-+.
T Consensus 168 ~G~-~HIaf~VdDVdaa~erL~a~Gv~----~v~~P~---------------~g--~~~riaFIkDPDGn~IEL~ 220 (233)
T PLN02367 168 RGF-GHIGITVDDVYKACERFEELGVE----FVKKPN---------------DG--KMKGIAFIKDPDGYWIEIF 220 (233)
T ss_pred CCc-eEEEEEcCCHHHHHHHHHHCCCE----EEeCCc---------------cC--CceEEEEEECCCCCEEEEE
Confidence 367 58999999988877777777653 333331 12 1247788989 99755443
No 135
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=36.27 E-value=81 Score=23.34 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=28.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++.|+++|+ .+..+|..........-+..++
T Consensus 103 ~pg~~elL~~L~~~g~-~l~I~T~~~~~~~~~~l~~~~l 140 (267)
T PRK13478 103 IPGVLEVIAALRARGI-KIGSTTGYTREMMDVVVPLAAA 140 (267)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEcCCcHHHHHHHHHHHhh
Confidence 5788889999999999 5777776666666666665544
No 136
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=36.15 E-value=80 Score=24.06 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC-CCCceEEe--ecCCchHhHhhCCc
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN-AEGKIRFL--ADPNLEFTKKLGVE 64 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~-~~~~i~~l--sD~~~~~~k~~G~~ 64 (109)
..+.+..+++.|+| .+.+++|++. .|++.-. .. ++||| .|.+++=.+.-|+.
T Consensus 64 L~~~a~~Le~~GAd-~i~l~~NT~H---~~~d~iq~~~-~iPllhIidaTa~~ik~~g~k 118 (230)
T COG1794 64 LIDAAKKLERAGAD-FIVLPTNTMH---KVADDIQKAV-GIPLLHIIDATAKAIKAAGAK 118 (230)
T ss_pred HHHHHHHHHhcCCC-EEEEeCCcHH---HHHHHHHHhc-CCCeehHHHHHHHHHHhcCCc
Confidence 45677889999996 9999999865 3443321 21 25555 46666666665654
No 137
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=35.71 E-value=48 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.8
Q ss_pred hhHHHcHHHHHhCCCCEEEEEec
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
|...+-++++.+.|+++|++++.
T Consensus 99 P~i~~~l~~l~~~g~~~iivlPl 121 (159)
T cd03411 99 PSIEEALEELKADGVDRIVVLPL 121 (159)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEC
Confidence 56677899999999999999875
No 138
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=35.68 E-value=1.3e+02 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=40.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc------CCCCceEEeec--CCchHh
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN------NAEGKIRFLAD--PNLEFT 58 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~------~~~~~i~~lsD--~~~~~~ 58 (109)
..+..-++...++.++|+| |+=+++.+.-..++..+-. |. ++|+++| .+.+++
T Consensus 38 ~D~~atv~Qi~~l~~aGce-iVRvtv~~~~~a~~l~~I~~~l~~~G~--~iPLVADIHF~~~~A 98 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGE-YVRLTTQGVREAENLMNINIGLRSQGY--MVPLVADVHFNPKVA 98 (611)
T ss_pred ccHHHHHHHHHHHHHcCCC-EEEEcCCCHHHHHhHHHHHHHHhhcCC--CCCEEEecCCCcHHH
Confidence 3455667888899999995 9999999999988886422 33 3999999 555554
No 139
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=35.61 E-value=83 Score=27.54 Aligned_cols=38 Identities=8% Similarity=0.064 Sum_probs=33.2
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
+-.+..++++++|+ .|+-++-|.+.+-++.+++.|+..
T Consensus 446 ~a~~aI~~l~~aGI-~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 446 DTKETIERARHLGV-EVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred hHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCCCC
Confidence 44567788999999 699999999999999999999854
No 140
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=35.36 E-value=44 Score=19.29 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=15.0
Q ss_pred cchhHHHcHHHHHhCCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIH 21 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd 21 (109)
-||.|...++++++.|++
T Consensus 10 RL~~Y~r~L~~l~~~G~~ 27 (50)
T PF06971_consen 10 RLPLYLRYLEQLKEEGVE 27 (50)
T ss_dssp HHHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHcCCe
Confidence 378999999999999996
No 141
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=35.22 E-value=2e+02 Score=21.89 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=29.0
Q ss_pred CCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-C-CeEEEEEE
Q psy5401 19 GIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-D-GKITQLNI 92 (109)
Q Consensus 19 Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-d-G~V~~~~v 92 (109)
|+ .|+.||+|..-. . .++.. +.+..+++.||+.. .. ..|+++ + |+|..+..
T Consensus 196 g~-~Vi~VsvD~~~~----------~-~fp~~-~~d~~la~~~gV~~----vP------tl~Lv~~~~~~v~~v~~ 248 (271)
T TIGR02740 196 GI-EVLPVSVDGGPL----------P-GFPNA-RPDAGQAQQLKIRT----VP------AVFLADPDPNQFTPIGF 248 (271)
T ss_pred Cc-EEEEEeCCCCcc----------c-cCCcc-cCCHHHHHHcCCCc----CC------eEEEEECCCCEEEEEEe
Confidence 66 688888875321 1 13333 44566888888742 11 557777 3 56655543
No 142
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=35.12 E-value=76 Score=20.41 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEEec--CCHHHHH--HHHHhcCCCCceEEeec-CCchHhHhhCC
Q psy5401 22 EIFCIAV--NDAFVME--AWCRKNNAEGKIRFLAD-PNLEFTKKLGV 63 (109)
Q Consensus 22 ~V~~iS~--dd~f~~~--aW~~~~~~~~~i~~lsD-~~~~~~k~~G~ 63 (109)
-++++|. .++.+.+ .++++.+.+ +..+.+ ++..+++.-..
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~--vi~iT~~~~s~la~~ad~ 94 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAP--IIAITGNPNSTLAKLSDV 94 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCe--EEEEeCCCCCchhhhCCE
Confidence 3555553 3333333 334555543 555555 56677765443
No 143
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=34.83 E-value=97 Score=23.30 Aligned_cols=47 Identities=21% Similarity=0.166 Sum_probs=35.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.+.+++++|+ .+..+|..+........+.+++..- ..+-+|
T Consensus 111 ~pg~~e~L~~L~~~g~-~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~ 159 (260)
T PLN03243 111 RPGSREFVQALKKHEI-PIAVASTRPRRYLERAIEAVGMEGFFSVVLAAE 159 (260)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecc
Confidence 5788889999999999 6888888777778888888887532 344454
No 144
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=34.82 E-value=87 Score=27.37 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=31.9
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+..+++++.|+ +++-+|-|.+-+-++.+++.|+.
T Consensus 448 ~~~~eai~~Lr~~GI-~vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 448 PGIKERFAELRKMGI-KTVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred hhHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCCc
Confidence 455667788899999 69999999999999999988874
No 145
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=34.49 E-value=47 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=24.3
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHH
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVM 34 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~ 34 (109)
-+|+..+.+++++++|+ .++.+|.|+....
T Consensus 19 ~~~ga~e~l~~L~~~g~-~~~~~Tnns~~~~ 48 (279)
T TIGR01452 19 VVPGAPELLDRLARAGK-AALFVTNNSTKSR 48 (279)
T ss_pred eCcCHHHHHHHHHHCCC-eEEEEeCCCCCCH
Confidence 47888888999999999 6999999875433
No 146
>PF13686 DrsE_2: DsrE/DsrF/DrsH-like family; PDB: 2QS7_C 3PNX_C.
Probab=34.33 E-value=31 Score=24.13 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=18.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
+++|++.+..++-++.|| ++|+.+.
T Consensus 88 ~~v~sl~eLl~~a~e~GV-k~~AC~m 112 (148)
T PF13686_consen 88 KGVPSLEELLEMAKELGV-KFYACSM 112 (148)
T ss_dssp CT---HHHHHHHHHHCCE-EEEEEHH
T ss_pred cCCCCHHHHHHHHHHCCC-EEEEehh
Confidence 578999999999999999 6888765
No 147
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=34.25 E-value=98 Score=22.87 Aligned_cols=36 Identities=6% Similarity=0.023 Sum_probs=29.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
.|+..+.+++++++|+ .++.+|..+...++.+.+..
T Consensus 97 ypgv~e~L~~Lk~~G~-~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 97 YPDVPPALEAWLQLGL-RLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred CcCHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHhhc
Confidence 4677888899999999 69999999988888876654
No 148
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=34.23 E-value=1.3e+02 Score=21.57 Aligned_cols=38 Identities=13% Similarity=0.016 Sum_probs=25.8
Q ss_pred hhHHHcHHHHHhCCC-CEEEEEecCC-----HHHHHHH--HHhcCC
Q psy5401 6 PGYLAKEKDLKAKGI-HEIFCIAVND-----AFVMEAW--CRKNNA 43 (109)
Q Consensus 6 p~f~~~~~~f~~~Gv-d~V~~iS~dd-----~f~~~aW--~~~~~~ 43 (109)
|.+.+.++++++.+- +.|+.+|.+. +.-..+. .+.+++
T Consensus 62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI 107 (168)
T PF09419_consen 62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI 107 (168)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC
Confidence 678889999998765 3689999873 3444444 444453
No 149
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=34.18 E-value=49 Score=19.74 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=11.6
Q ss_pred EEEEEe-CCeEEEEEEe
Q psy5401 78 YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~ 93 (109)
.++++| ||+|.+.+-.
T Consensus 7 ~i~v~D~~~~i~~~N~~ 23 (110)
T PF08448_consen 7 GIFVIDPDGRIVYANQA 23 (110)
T ss_dssp EEEEEETTSBEEEE-HH
T ss_pred eeEEECCCCEEEEEHHH
Confidence 457889 9999987643
No 150
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=34.16 E-value=56 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred CCCEEEEEecCCHHHHHHHHHh
Q psy5401 19 GIHEIFCIAVNDAFVMEAWCRK 40 (109)
Q Consensus 19 Gvd~V~~iS~dd~f~~~aW~~~ 40 (109)
-+++|+.|.+.++.+.++|...
T Consensus 20 ~i~ev~lI~T~~~~v~~~~~~l 41 (124)
T TIGR03642 20 PISDVILIYTKDPYVLSALRAL 41 (124)
T ss_pred CCCeEEEEEcCCHHHHHHHHHH
Confidence 4779999999999999999753
No 151
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.06 E-value=1.3e+02 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=25.9
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 40 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~ 40 (109)
..|++.+.+.++++.|+ .+..+|.|+.....+-.+.
T Consensus 32 ~~~~~~e~L~~L~~~Gi-~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGF-LLALASKNDEDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCCC-EEEEEcCCCHHHHHHHHHh
Confidence 35789999999999999 5777777776544443344
No 152
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=34.05 E-value=1.3e+02 Score=20.50 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=26.3
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHH---------------HHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAF---------------VMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f---------------~~~aW~~~~~~~ 44 (109)
+...+.+.+++++|. .|+-+|--+.- ...+|.++++++
T Consensus 27 ~~~ie~L~~l~~~G~-~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ip 79 (126)
T TIGR01689 27 LAVIEKLRHYKALGF-EIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVP 79 (126)
T ss_pred HHHHHHHHHHHHCCC-EEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCC
Confidence 566777888888999 57777754443 446777777664
No 153
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=33.51 E-value=68 Score=20.08 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=22.2
Q ss_pred hHhhCCccccccCCceeEeEEEEEEeCCeEEEEEEec
Q psy5401 58 TKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 94 (109)
Q Consensus 58 ~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v~~ 94 (109)
+|.-|..+|.. .| |-.|+++|-|.|-|....+.+
T Consensus 33 ak~~~~lIdaT-~G--rktrsviitdsghviLSa~~~ 66 (73)
T PF04025_consen 33 AKEEGKLIDAT-YG--RKTRSVIITDSGHVILSALQP 66 (73)
T ss_pred HHHcCcEEEee-CC--CceeEEEEEcCCcEEEeeCCH
Confidence 34446666643 35 667999999988776665554
No 154
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=33.32 E-value=59 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
.|+..+.+.+|+++|+ .+..+|..+.
T Consensus 28 ~pgv~e~L~~Lk~~G~-~l~i~TN~~~ 53 (176)
T TIGR00213 28 IDGVIDALRELKKMGY-ALVLVTNQSG 53 (176)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCcc
Confidence 5788999999999999 6777777763
No 155
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=33.14 E-value=1.7e+02 Score=23.14 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=29.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
|+..+.+++++++|+ .+..+|..+........+..++..-|
T Consensus 151 p~V~EtL~eLkekGi-kLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 151 PFVYDSLDELKERGC-VLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred hhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHcCCCccc
Confidence 888899999999999 35445545566666677778876433
No 156
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=32.86 E-value=1.5e+02 Score=21.11 Aligned_cols=39 Identities=10% Similarity=-0.114 Sum_probs=28.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.|+++|. .+..+|.+ .......--+..++.
T Consensus 47 ~pGv~elL~~Lk~~G~-~l~I~Sn~~~~~~~~~~L~~~~l~ 86 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGT-YLATASWNDVPEWAYEILGTFEIT 86 (174)
T ss_pred cccHHHHHHHHHHCCC-EEEEEeCCCChHHHHHHHHhCCcC
Confidence 3777889999999999 58888877 565555555566653
No 157
>KOG1346|consensus
Probab=32.11 E-value=59 Score=27.66 Aligned_cols=70 Identities=24% Similarity=0.455 Sum_probs=42.7
Q ss_pred CCCcchhHHHcH--HHHHhCCCCEEEEEecCCHHHHHHHHHhcC--CCCceEEeec---------CCchHhHhhCCcccc
Q psy5401 1 MKTHLPGYLAKE--KDLKAKGIHEIFCIAVNDAFVMEAWCRKNN--AEGKIRFLAD---------PNLEFTKKLGVEHEI 67 (109)
Q Consensus 1 ~~~hlp~f~~~~--~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~--~~~~i~~lsD---------~~~~~~k~~G~~~~~ 67 (109)
|++-||.|+.++ ++.+.-||+ | +..-.+-....-+..+- +.+.-.+-+| ||.+++++-|+.+|.
T Consensus 387 m~kiLPeyls~wt~ekir~~GV~-V--~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~ 463 (659)
T KOG1346|consen 387 MEKILPEYLSQWTIEKIRKGGVD-V--RPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDE 463 (659)
T ss_pred hhhhhHHHHHHHHHHHHHhcCce-e--ccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeec
Confidence 667789998865 566677885 3 23333444444444432 2222333333 899999999999996
Q ss_pred ccCCcee
Q psy5401 68 PVLGGWR 74 (109)
Q Consensus 68 ~~~Gg~r 74 (109)
. +||.|
T Consensus 464 ~-lGGfr 469 (659)
T KOG1346|consen 464 K-LGGFR 469 (659)
T ss_pred c-cCcEE
Confidence 4 56543
No 158
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.51 E-value=74 Score=21.70 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.8
Q ss_pred cCCceeEeEEEEEEe-CCeEEEEEEecCC
Q psy5401 69 VLGGWRSKRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 69 ~~Gg~r~~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.+| |+.+|+++=- +|.|.-+++..+|
T Consensus 19 hFg--rap~F~Ivd~e~g~i~~vev~~np 45 (121)
T COG1433 19 HFG--RAPYFTIVDVEDGEIKNVEVIENP 45 (121)
T ss_pred Ccc--CCceEEEEEecCCcEEEEEEeecc
Confidence 356 8877755543 8999999999877
No 159
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=31.03 E-value=1.3e+02 Score=22.51 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=29.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.++++|+ .++.+|...........+..++.
T Consensus 103 ~~g~~e~L~~Lk~~g~-~l~ivTn~~~~~~~~~l~~~~i~ 141 (272)
T PRK13223 103 YPGVRDTLKWLKKQGV-EMALITNKPERFVAPLLDQMKIG 141 (272)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEECCcHHHHHHHHHHcCcH
Confidence 5888899999999999 57777776666666666666654
No 160
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=30.84 E-value=1e+02 Score=18.01 Aligned_cols=19 Identities=16% Similarity=0.506 Sum_probs=15.8
Q ss_pred EEEEEEe-CCeEEEEEEecC
Q psy5401 77 RYSMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~~ 95 (109)
...|.|+ ||.|..+.+...
T Consensus 19 ~v~~~I~~~G~v~~~~v~~s 38 (79)
T PF03544_consen 19 VVEFTIDPDGRVSDVRVIQS 38 (79)
T ss_dssp EEEEEEETTTEEEEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEEEEc
Confidence 6778999 999999888753
No 161
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.75 E-value=98 Score=27.29 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=48.6
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeecCCchHhHhhCCccccccCCceeEeEEEEEEeCC
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDG 85 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG 85 (109)
=.+-.++|++.|+ +++-+|-|..-+-++.++++|+.. + .++.+...+..+++- + .| |.+..|-||
T Consensus 542 a~~aI~~L~~~Gi-~~~mLTGDn~~~A~~iA~~lGId~-v~AellPedK~~~V~~l~---~---~g-----~~VamVGDG 608 (713)
T COG2217 542 AKEAIAALKALGI-KVVMLTGDNRRTAEAIAKELGIDE-VRAELLPEDKAEIVRELQ---A---EG-----RKVAMVGDG 608 (713)
T ss_pred HHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcChHh-heccCCcHHHHHHHHHHH---h---cC-----CEEEEEeCC
Confidence 3466788999999 599999999999999999999843 3 566666667777763 1 13 455666666
Q ss_pred e
Q psy5401 86 K 86 (109)
Q Consensus 86 ~ 86 (109)
+
T Consensus 609 I 609 (713)
T COG2217 609 I 609 (713)
T ss_pred c
Confidence 5
No 162
>PRK11590 hypothetical protein; Provisional
Probab=30.72 E-value=1.9e+02 Score=20.64 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=28.3
Q ss_pred chhHHHcH-HHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKE-KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~-~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.+ +.+++.|. .++.+|.-..+..+.+.+.++.
T Consensus 97 ~pga~e~L~~~l~~~G~-~l~IvSas~~~~~~~il~~l~~ 135 (211)
T PRK11590 97 FPVVQERLTTYLLSSDA-DVWLITGSPQPLVEQVYFDTPW 135 (211)
T ss_pred CccHHHHHHHHHHhCCC-EEEEEeCCcHHHHHHHHHHccc
Confidence 47777778 45777898 5777777777778888877773
No 163
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=30.42 E-value=77 Score=20.94 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=15.9
Q ss_pred eEeEEEEEEeCCeEEEEEEecC
Q psy5401 74 RSKRYSMVVDDGKITQLNIEPD 95 (109)
Q Consensus 74 r~~R~~fiVddG~V~~~~v~~~ 95 (109)
...|. +-+-+|+|+|++++..
T Consensus 43 ~~~R~-v~v~~G~ikfV~i~~~ 63 (131)
T PF07762_consen 43 ESYRD-VGVSGGKIKFVEIDGY 63 (131)
T ss_pred hhCce-EEecCCCEEEEEEecc
Confidence 45576 3448999999999975
No 164
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.35 E-value=99 Score=19.78 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=16.7
Q ss_pred EEEEe--cCCHHHHHHHHH--hcCCCCceEEeec-CCchHhHhhC
Q psy5401 23 IFCIA--VNDAFVMEAWCR--KNNAEGKIRFLAD-PNLEFTKKLG 62 (109)
Q Consensus 23 V~~iS--~dd~f~~~aW~~--~~~~~~~i~~lsD-~~~~~~k~~G 62 (109)
++++| -.++.+.++-.. ..|. ++..+.+ ++..+++.-+
T Consensus 50 ~I~iS~sG~t~e~~~~~~~a~~~g~--~vi~iT~~~~s~la~~ad 92 (126)
T cd05008 50 VIAISQSGETADTLAALRLAKEKGA--KTVAITNVVGSTLAREAD 92 (126)
T ss_pred EEEEeCCcCCHHHHHHHHHHHHcCC--eEEEEECCCCChHHHhCC
Confidence 45554 344444444332 2333 2444444 5555555443
No 165
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=30.10 E-value=1.1e+02 Score=23.41 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=31.5
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAE 44 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~ 44 (109)
-+|+..+-+..++++|+ .|+.||..+.-. ..+|.+..|+.
T Consensus 119 ~ipGA~e~L~~L~~~G~-~v~iVTnR~~~~~~~T~~~Lkk~Gi~ 161 (266)
T TIGR01533 119 PVAGALDFLNYANSKGV-KIFYVSNRSEKEKAATLKNLKRFGFP 161 (266)
T ss_pred cCccHHHHHHHHHHCCC-eEEEEeCCCcchHHHHHHHHHHcCcC
Confidence 36888889999999999 599998877443 44788888875
No 166
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=30.09 E-value=1.3e+02 Score=21.90 Aligned_cols=41 Identities=10% Similarity=0.225 Sum_probs=30.1
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHH--HHHHhcCCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVME--AWCRKNNAEG 45 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~--aW~~~~~~~~ 45 (109)
-+|+-.+.++++++.|+ .+..+|+.+..... ..-+.+++..
T Consensus 25 ~~pga~e~L~~L~~~G~-~~~ivTN~~~~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGK-PVYFVSNSPRNIFSLHKTLKSLGINA 67 (242)
T ss_pred cCccHHHHHHHHHHCCC-EEEEEeCCCCChHHHHHHHHHCCCCc
Confidence 46888899999999999 68888876654433 4456777753
No 167
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=30.00 E-value=1.3e+02 Score=25.13 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=34.6
Q ss_pred chhHHHcHHHHHhCC-CCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKG-IHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~G-vd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
-|+..+.++++++.| + .+..+|.|......+.++..|+.
T Consensus 386 ~~g~~e~l~~L~~~g~i-~v~ivTgd~~~~a~~i~~~lgi~ 425 (556)
T TIGR01525 386 RPEAKEAIAALKRAGGI-KLVMLTGDNRSAAEAVAAELGID 425 (556)
T ss_pred hHhHHHHHHHHHHcCCC-eEEEEeCCCHHHHHHHHHHhCCC
Confidence 477788889999999 8 69999999999999999999985
No 168
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=29.89 E-value=1.3e+02 Score=20.39 Aligned_cols=37 Identities=27% Similarity=0.172 Sum_probs=25.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|.. + ......+..++.
T Consensus 90 ~~g~~~~l~~l~~~g~-~i~i~S~~-~-~~~~~l~~~~l~ 126 (185)
T TIGR02009 90 LPGIENFLKRLKKKGI-AVGLGSSS-K-NADRILAKLGLT 126 (185)
T ss_pred CcCHHHHHHHHHHcCC-eEEEEeCc-h-hHHHHHHHcChH
Confidence 5677888899999999 46655544 3 345566666664
No 169
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=29.80 E-value=44 Score=26.26 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=33.0
Q ss_pred eEEeecCCchHhHhhCCcccc-ccCCceeEeEEEEEEe-CCeEEEEEEecCCCceee
Q psy5401 47 IRFLADPNLEFTKKLGVEHEI-PVLGGWRSKRYSMVVD-DGKITQLNIEPDGTGLTC 101 (109)
Q Consensus 47 i~~lsD~~~~~~k~~G~~~~~-~~~Gg~r~~R~~fiVd-dG~V~~~~v~~~~~~~~~ 101 (109)
+.|+.+++.+|.+.. +..+. +.+| -=++|+|| +|+++|....+..+..+.
T Consensus 79 y~fi~~~~~~~i~sN-Lg~~~~~~~g----~d~vf~vd~~G~~vy~~~~d~~t~~~~ 130 (295)
T COG3322 79 YRFIDNPDPEFIESN-LGDELFSDLG----LDGVFVVDPSGKLVYSKLVDQETATEL 130 (295)
T ss_pred HHHHcCCCHHHHHhh-hhHHHhhhcC----ccEEEEECCCCCEEEEeeecccccccc
Confidence 567778999998765 21111 2233 23789999 999999999865444333
No 170
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=29.75 E-value=38 Score=20.19 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=18.0
Q ss_pred HHHhCCCC-EEEEEecCCHHHHHHHHHhcCCCCceEEeecC
Q psy5401 14 DLKAKGIH-EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP 53 (109)
Q Consensus 14 ~f~~~Gvd-~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~ 53 (109)
-++++|++ +++-+......-...|-.+.+..+++|.|-|.
T Consensus 18 ~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~ 58 (73)
T cd03052 18 VIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHG 58 (73)
T ss_pred HHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEEC
Confidence 34556664 33333322222233444444444556666553
No 171
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.58 E-value=74 Score=20.40 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=21.0
Q ss_pred hHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 58 TKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 58 ~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
+|.-|+++|.. .| |-.|++.|-| |-+|- ..+.|
T Consensus 37 Ardr~~LIDAT-YG--RrTRavii~DS~hvIL-SAiQP 70 (89)
T COG2052 37 ARDRGMLIDAT-YG--RRTRAVIITDSDHVIL-SAIQP 70 (89)
T ss_pred HHhcCcEEEcc-cC--ceeeEEEEecCCcEEE-eccCh
Confidence 45567777753 44 6669998889 55553 34443
No 172
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=29.37 E-value=1.3e+02 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=32.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|....+....+.+.+++.
T Consensus 183 ~pGa~elL~~Lk~~G~-~~aIvSgg~~~~~~~l~~~Lgld 221 (322)
T PRK11133 183 MPGLTELVLKLQALGW-KVAIASGGFTYFADYLRDKLRLD 221 (322)
T ss_pred ChhHHHHHHHHHHcCC-EEEEEECCcchhHHHHHHHcCCC
Confidence 5788888999999999 68888888777777888877764
No 173
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=29.33 E-value=1.3e+02 Score=20.84 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=26.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+-.+.+..++++|+ .+..+|..+. .+....+..++.
T Consensus 107 ~~g~~~~l~~L~~~g~-~~~i~Sn~~~-~~~~~l~~~~l~ 144 (203)
T TIGR02252 107 YPDAIKLLKDLRERGL-ILGVISNFDS-RLRGLLEALGLL 144 (203)
T ss_pred CcCHHHHHHHHHHCCC-EEEEEeCCch-hHHHHHHHCCcH
Confidence 5778888899999999 5777775444 445556666664
No 174
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=29.14 E-value=1.8e+02 Score=22.17 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=32.2
Q ss_pred HcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHh
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFT 58 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~ 58 (109)
+..++.++.|. .|++-.+|++-.++.+.+ .|.. -+++|.-..+.
T Consensus 252 ~~v~~~~~~G~-~v~vWTVNd~~~~~~l~~-~GVd---gIiTD~P~~l~ 295 (300)
T cd08612 252 SLFRHLQKRGI-QVYGWVLNDEEEFERAFE-LGAD---GVMTDYPTKLR 295 (300)
T ss_pred HHHHHHHHCCC-EEEEeecCCHHHHHHHHh-cCCC---EEEeCCHHHHH
Confidence 34556678899 699999999999998886 6764 36677444443
No 175
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=29.01 E-value=1.6e+02 Score=22.17 Aligned_cols=51 Identities=8% Similarity=0.011 Sum_probs=39.9
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhh
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~ 61 (109)
+.+.++.+.+.|+|.|+-=+|-=|+..+...+..+.. +++ =|+.-.+++..
T Consensus 161 l~~~l~~l~~~~~d~lILGCTh~P~l~~~i~~~~~~~--v~~-IDp~~~la~~~ 211 (251)
T TIGR00067 161 LKRYLRPLLDTLPDTVVLGCTHFPLLKEEIEQYLPEH--VRL-VDSGVHTARRT 211 (251)
T ss_pred HHHHHHHHhcCCCCEEEECcCChHHHHHHHHHHcCCC--cEE-ECCHHHHHHHH
Confidence 4555667777899999999999999999888766653 554 58888888765
No 176
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=28.97 E-value=2.1e+02 Score=22.17 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=32.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+|.+.++.++++|+ .++.+|.--......-.+..++
T Consensus 123 ~pG~~efl~~L~~~GI-pv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 123 KDGYENFFDKLQQHSI-PVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred CcCHHHHHHHHHHCCC-cEEEEeCCcHHHHHHHHHHcCC
Confidence 5889999999999999 6999998888777777777776
No 177
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=28.90 E-value=1.2e+02 Score=21.21 Aligned_cols=34 Identities=15% Similarity=0.337 Sum_probs=25.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 39 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~ 39 (109)
.|+..+.++.++++|. .+..+|..+......|..
T Consensus 86 ~~g~~e~L~~l~~~g~-~~~i~Sn~~~~~~~~~~~ 119 (199)
T PRK09456 86 RPEVIAIMHKLREQGH-RVVVLSNTNRLHTTFWPE 119 (199)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEcCCchhhHHHHHh
Confidence 5788899999999999 577777766655555543
No 178
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=28.79 E-value=1.1e+02 Score=18.72 Aligned_cols=27 Identities=33% Similarity=0.746 Sum_probs=20.9
Q ss_pred eEEeecCCc-hHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 47 IRFLADPNL-EFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 47 i~~lsD~~~-~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
+.++-||.. ++||.+|+..+ | +|++.|
T Consensus 36 ~~iIidpe~SeIAkrlgi~~P----g-----~yAl~V 63 (64)
T COG2093 36 LLIIIDPEKSEIAKRLGIKIP----G-----KYALRV 63 (64)
T ss_pred EEEEEcCcHHHHHHHhCCCCC----c-----eEEEEe
Confidence 778889876 99999998764 4 676654
No 179
>PRK00865 glutamate racemase; Provisional
Probab=28.75 E-value=1.4e+02 Score=22.36 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=38.8
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhh
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~ 61 (109)
+.+.++.+.+.|+|.|+-=++-=|+......+..+.. ++++ |+.-..++..
T Consensus 166 l~~~l~~l~~~g~d~iILGCTh~p~l~~~i~~~~~~~--v~vI-Dp~~~~a~~~ 216 (261)
T PRK00865 166 LREYLAPLLAAGIDTLVLGCTHYPLLKPEIQQVLGEG--VTLI-DSGEAIARRV 216 (261)
T ss_pred HHHHHHHHhcCCCCEEEECCcCHHHHHHHHHHHcCCC--CEEE-CCHHHHHHHH
Confidence 4556677777899988888899999988877766653 7776 8887777665
No 180
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=28.75 E-value=1.7e+02 Score=21.55 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=29.1
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAE 44 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~ 44 (109)
.+|+=.+.+.+++++|. .++.+|.|+ +....+..+..|+.
T Consensus 18 ~i~~a~~~l~~l~~~g~-~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 18 RIPEAETFVHELQKRDI-PYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred eCcCHHHHHHHHHHCCC-eEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 46666788889999999 688888766 55556666666653
No 181
>PRK11587 putative phosphatase; Provisional
Probab=28.74 E-value=1.1e+02 Score=21.69 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=27.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++.++++|+ .+..+|.++......-.+..++
T Consensus 85 ~pg~~e~L~~L~~~g~-~~~ivTn~~~~~~~~~l~~~~l 122 (218)
T PRK11587 85 LPGAIALLNHLNKLGI-PWAIVTSGSVPVASARHKAAGL 122 (218)
T ss_pred CcCHHHHHHHHHHcCC-cEEEEcCCCchHHHHHHHhcCC
Confidence 5788889999999999 5777777765544444455555
No 182
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=28.35 E-value=1.3e+02 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=32.7
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+-.+..++++++|+ .|+-||-|.+.+-.+-++..|+.
T Consensus 519 ~~~~aI~~l~~aGI-~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 519 STKEAIAALFKNGI-NVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred hHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCC
Confidence 44566788999999 69999999999999999999985
No 183
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.25 E-value=1.5e+02 Score=22.75 Aligned_cols=52 Identities=10% Similarity=0.240 Sum_probs=45.1
Q ss_pred HHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccc
Q psy5401 12 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHE 66 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~ 66 (109)
..-|+..+| ..+.||.-..--..+..+..|-. |+..|+..+.|-+.|.+...
T Consensus 105 ~~HL~~~dv-~lv~VsRAPl~~l~~~k~rmGW~--f~w~Ss~~s~Fn~Df~vsf~ 156 (247)
T COG4312 105 VAHLEHHDV-TLVAVSRAPLEELVAYKRRMGWQ--FPWVSSTDSDFNRDFQVSFT 156 (247)
T ss_pred hhhHhhcCc-eEEEEecCcHHHHHHHHHhcCCc--ceeEeccCcccccccccccc
Confidence 345677789 69999999999999999999986 99999999999999977443
No 184
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=28.15 E-value=1.5e+02 Score=20.66 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=27.8
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHH------------HHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAF------------VMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f------------~~~aW~~~~~~~ 44 (109)
|+..+.+++++++|+ .+..+|..+.. ....+.+.+++.
T Consensus 45 pgv~e~L~~Lk~~G~-~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~ 94 (166)
T TIGR01664 45 PEIPAKLQELDDEGY-KIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP 94 (166)
T ss_pred CCHHHHHHHHHHCCC-EEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC
Confidence 788999999999999 57766665542 245567777774
No 185
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=28.13 E-value=2.2e+02 Score=20.26 Aligned_cols=52 Identities=6% Similarity=-0.045 Sum_probs=41.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHh
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 60 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~ 60 (109)
+|...+-+.++.+. |+ |+.-|-|.-=+...-++..|.+ ..-+.+.+..+.|+
T Consensus 32 f~ev~e~iqeL~d~-V~-i~IASgDr~gsl~~lae~~gi~--~~rv~a~a~~e~K~ 83 (152)
T COG4087 32 FSEVSETIQELHDM-VD-IYIASGDRKGSLVQLAEFVGIP--VERVFAGADPEMKA 83 (152)
T ss_pred cHhhHHHHHHHHHh-he-EEEecCCcchHHHHHHHHcCCc--eeeeecccCHHHHH
Confidence 45666778888988 85 9999999999999999988875 66666666666654
No 186
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=28.11 E-value=65 Score=24.63 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=18.5
Q ss_pred EEEEecCCHHHHHHHHHhcCC
Q psy5401 23 IFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 23 V~~iS~dd~f~~~aW~~~~~~ 43 (109)
=+.+|-|.--+++.|++..+.
T Consensus 21 dIvlS~~pge~lrKWR~~F~v 41 (241)
T COG1709 21 DIVLSEDPGETLRKWREIFNV 41 (241)
T ss_pred ceEecCChhHHHHHHHHHhCc
Confidence 367999999999999998776
No 187
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=28.03 E-value=1.4e+02 Score=26.51 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=39.5
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc------CCCCceEEeec--CCchHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN------NAEGKIRFLAD--PNLEFT 58 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~------~~~~~i~~lsD--~~~~~~ 58 (109)
.+..-++.+.++.+.|++ |+=+++.+.-.-++..+-. +. .+|+++| .+.+++
T Consensus 108 D~eatv~Qi~~l~~aGce-iVRvtv~~~~~A~al~~I~~~L~~~g~--~iPLVADIHF~~~~A 167 (733)
T PLN02925 108 DVEATVDQVMRIADKGAD-IVRITVQGKKEADACFEIKNTLVQKGY--NIPLVADIHFAPSVA 167 (733)
T ss_pred cHHHHHHHHHHHHHcCCC-EEEEcCCCHHHHHhHHHHHHHHhhcCC--CCCEEEecCCCHHHH
Confidence 445567788899999995 9999999999888886432 34 3999999 455444
No 188
>PF13128 DUF3954: Protein of unknown function (DUF3954)
Probab=27.74 E-value=82 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.2
Q ss_pred EEEEEeCCeEEEE
Q psy5401 78 YSMVVDDGKITQL 90 (109)
Q Consensus 78 ~~fiVddG~V~~~ 90 (109)
.+.||.||.|.++
T Consensus 11 giYiV~~G~v~~i 23 (50)
T PF13128_consen 11 GIYIVKDGEVTFI 23 (50)
T ss_pred eEEEEECCeEEEc
Confidence 3467789999987
No 189
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=27.64 E-value=82 Score=21.15 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=19.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND 30 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd 30 (109)
.|+..+.++.|+++|+ .++.+|..+
T Consensus 29 ~~g~~~~l~~Lk~~g~-~~~I~Sn~~ 53 (147)
T TIGR01656 29 RPGAVPALLTLRAAGY-TVVVVTNQS 53 (147)
T ss_pred cCChHHHHHHHHHCCC-EEEEEeCCC
Confidence 5788899999999999 466666554
No 190
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=27.41 E-value=2.5e+02 Score=20.47 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=32.1
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
..|.-.+.+++++++|+ .++..|.-++.......+++++.
T Consensus 16 ~~~~~~~ai~~l~~~G~-~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 16 EPGPAREALEELKDLGF-PIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred CchHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCC
Confidence 34556778888999999 57777888888888888888874
No 191
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.41 E-value=1.4e+02 Score=21.15 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=43.5
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCcccc----ccCCceeEeEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI----PVLGGWRSKRYS 79 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~----~~~Gg~r~~R~~ 79 (109)
|+|+-+=...+++++|.+ |...++- -++ +..=+||+++..++.. +..+. ...|+.. =++
T Consensus 17 qissaiYls~klkkkgf~-v~Vaate-----------Aa~--kLlevaD~ek~Y~de~-vdlek~~ed~ie~~~~--la~ 79 (148)
T COG4081 17 QISSAIYLSHKLKKKGFD-VTVAATE-----------AAL--KLLEVADPEKYYVDET-VDLEKYLEDPIEGGIL--LAA 79 (148)
T ss_pred cchHHHHHHHHhhccCcc-EEEecCH-----------hhh--eeeeeeCcccchhhhh-ccHHHhhhhhHhhhhe--EEE
Confidence 566666677889999996 7766651 112 2667899999998876 43332 1123322 356
Q ss_pred EEEeCCeEEEE
Q psy5401 80 MVVDDGKITQL 90 (109)
Q Consensus 80 fiVddG~V~~~ 90 (109)
|+-+|+-++|.
T Consensus 80 FvhNDag~~ya 90 (148)
T COG4081 80 FVHNDAGLQYA 90 (148)
T ss_pred EecCCcchhhh
Confidence 77777755543
No 192
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=27.22 E-value=2.4e+02 Score=20.51 Aligned_cols=39 Identities=8% Similarity=-0.040 Sum_probs=32.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|.+.+.+.+++++|+ .++-.|.-++...+.-.+..+..
T Consensus 23 ~~~~~~~i~~~~~~gi-~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 23 LLRLNALLEDHRGEDS-LLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred HHHHHHHHHHhhccCc-eEEEEcCCCHHHHHHHHhcCCCC
Confidence 4788999999999999 68888888888888887766654
No 193
>PRK06769 hypothetical protein; Validated
Probab=27.18 E-value=86 Score=21.86 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=20.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
.|+-.+.+++|+++|+ .+..+|.++.
T Consensus 30 ~pgv~e~L~~Lk~~G~-~l~I~Tn~~~ 55 (173)
T PRK06769 30 FPFTKASLQKLKANHI-KIFSFTNQPG 55 (173)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEECCch
Confidence 5888899999999999 5777776553
No 194
>PF10055 DUF2292: Uncharacterized small protein (DUF2292); InterPro: IPR018743 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.10 E-value=98 Score=16.94 Aligned_cols=17 Identities=18% Similarity=0.610 Sum_probs=13.7
Q ss_pred EEEEEEeCCeEEEEEEe
Q psy5401 77 RYSMVVDDGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVddG~V~~~~v~ 93 (109)
.-+++|-||+|..++..
T Consensus 17 sV~iiiqdG~vvQIe~~ 33 (38)
T PF10055_consen 17 SVTIIIQDGRVVQIEKT 33 (38)
T ss_pred eEEEEEECCEEEEEEhh
Confidence 56788889999988764
No 195
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=27.03 E-value=1.4e+02 Score=26.87 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=33.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+..++++++|+ +|+-||-|.+-+-.+-++..|+.
T Consensus 553 ~~a~~aI~~l~~aGI-~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 553 ESAAPAIAALRENGV-AVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCCC
Confidence 344566788999999 69999999999999999999985
No 196
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=26.59 E-value=1.2e+02 Score=17.39 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.3
Q ss_pred eEEEEEEe-CCeEEEEEEecC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~ 95 (109)
-+..|.|+ ||.|..+.+...
T Consensus 12 v~v~~~i~~~G~v~~~~i~~s 32 (74)
T TIGR01352 12 VVVRFTVDADGRVTSVSVLKS 32 (74)
T ss_pred EEEEEEECCCCCEEEEEEEEc
Confidence 36779998 999999988753
No 197
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=26.49 E-value=57 Score=23.96 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=31.5
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 52 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD 52 (109)
.|.+.++.|++.|+..|+++.+=-.|+-.|+..-....=.=.++.|
T Consensus 98 Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTn 143 (184)
T PF14572_consen 98 TLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTN 143 (184)
T ss_dssp HHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEET
T ss_pred HHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEec
Confidence 4778889999999999999999999999888754332101245555
No 198
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=26.14 E-value=1.7e+02 Score=23.77 Aligned_cols=41 Identities=12% Similarity=-0.019 Sum_probs=34.4
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
-.|+..+.++.+++.|+ .+..+|....-.....-+..++..
T Consensus 217 l~pGa~ElL~~Lk~~Gi-klaIaSn~~~~~~~~~L~~lgL~~ 257 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKI-PMALVSTRPRKTLENAIGSIGIRG 257 (381)
T ss_pred cCcCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHcCCHH
Confidence 36888999999999999 688888888888888888888754
No 199
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=26.05 E-value=1.7e+02 Score=18.25 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=16.9
Q ss_pred hHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEEec
Q psy5401 56 EFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEP 94 (109)
Q Consensus 56 ~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v~~ 94 (109)
++++.|++. + .. ..++..||++.......
T Consensus 62 ~l~~~~~V~------~--~P--t~~~~~~G~~v~~~~G~ 90 (103)
T cd02985 62 ELCRREKII------E--VP--HFLFYKDGEKIHEEEGI 90 (103)
T ss_pred HHHHHcCCC------c--CC--EEEEEeCCeEEEEEeCC
Confidence 688888764 2 11 12333699887655543
No 200
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=25.83 E-value=92 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.441 Sum_probs=20.9
Q ss_pred cc-hhHHHcHHHHHhCCCCEEEEEec
Q psy5401 4 HL-PGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 4 hl-p~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
|+ |.|.+.+.+-.++|| +|++++.
T Consensus 178 ~~Dp~fa~~l~~A~~~GV-~v~a~~~ 202 (215)
T PF03749_consen 178 EIDPEFAEALREAAEAGV-EVLAYRC 202 (215)
T ss_pred hcCHHHHHHHHHHHHCCC-EEEEEEE
Confidence 44 899999999999999 7998875
No 201
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=25.62 E-value=70 Score=21.23 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.2
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND 30 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd 30 (109)
|...+.+.+++|++.|- +|++...|.
T Consensus 38 qy~~L~~L~~ky~~~gl-~ILaFPcnq 63 (108)
T PF00255_consen 38 QYKQLNELYEKYKDKGL-EILAFPCNQ 63 (108)
T ss_dssp HHHHHHHHHHHHGGGTE-EEEEEEBST
T ss_pred ccHHHHHHHHHHhcCCe-EEEeeehHH
Confidence 56788889999999999 799998775
No 202
>PRK08351 DNA-directed RNA polymerase subunit E''; Validated
Probab=25.32 E-value=1.5e+02 Score=17.88 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=16.1
Q ss_pred eEEeecCC-chHhHhhCCccc
Q psy5401 47 IRFLADPN-LEFTKKLGVEHE 66 (109)
Q Consensus 47 i~~lsD~~-~~~~k~~G~~~~ 66 (109)
+..+-||. .++|+.+|+...
T Consensus 33 ~viI~dPe~S~IAk~l~i~~p 53 (61)
T PRK08351 33 LVIIIDVENSRIAKKLGAKVP 53 (61)
T ss_pred EEEEeCCcHhHHHHHhCCCCC
Confidence 67788976 899999998653
No 203
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.20 E-value=1.5e+02 Score=18.74 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=16.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
+-+...+.+..+++.|+ .|++|+.+..
T Consensus 65 ~~~~~~~~~~~ak~~g~-~vi~iT~~~~ 91 (131)
T PF01380_consen 65 ETRELIELLRFAKERGA-PVILITSNSE 91 (131)
T ss_dssp TTHHHHHHHHHHHHTTS-EEEEEESSTT
T ss_pred cchhhhhhhHHHHhcCC-eEEEEeCCCC
Confidence 34455666666666777 4666665433
No 204
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.05 E-value=2.3e+02 Score=19.80 Aligned_cols=50 Identities=16% Similarity=0.052 Sum_probs=35.3
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL 55 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~ 55 (109)
..|+..+.+++++.+ . .++.+|...+..+....+.+|+..- ..+.|+..|
T Consensus 100 ~~~~~~~~L~~l~~~-~-~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g 151 (229)
T COG1011 100 DYPEALEALKELGKK-Y-KLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVG 151 (229)
T ss_pred cChhHHHHHHHHHhh-c-cEEEEeCCChHHHHHHHHHcCChhhhheEEEecccc
Confidence 456666777777766 5 4777777688888888888886543 477787655
No 205
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=25.03 E-value=2.4e+02 Score=21.28 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=31.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~~ 45 (109)
+|+-.+.+..++++|+ .|+-+|-=+... ..+|-...|..+
T Consensus 122 ip~al~l~~~l~~~G~-~Vf~lTGR~e~~r~~T~~nL~~~G~~~ 164 (229)
T TIGR01675 122 LPEGLKLYQKIIELGI-KIFLLSGRWEELRNATLDNLINAGFTG 164 (229)
T ss_pred CHHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHHcCCCC
Confidence 6788889999999999 588777766544 567888888764
No 206
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=24.90 E-value=3.1e+02 Score=21.73 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=27.2
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
|+..+.+++++++|+ .+..+|..+..-..+--+..|+..
T Consensus 149 PgV~EaL~~LkekGi-kLaIaTS~~Re~v~~~L~~lGLd~ 187 (301)
T TIGR01684 149 PRIYDSLTELKKRGC-ILVLWSYGDRDHVVESMRKVKLDR 187 (301)
T ss_pred HHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHcCCCc
Confidence 889999999999999 344444444444445566677754
No 207
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=24.85 E-value=1.6e+02 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=32.6
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+-.+..+++++.|+ .|+-||-|.+.+-.+-++..|+.
T Consensus 554 ~a~~aI~~l~~aGI-~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 554 TTAPALKALKASGV-TVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred hHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCC
Confidence 34556788999999 69999999999999999999985
No 208
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=24.80 E-value=1.6e+02 Score=26.24 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=33.8
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+..++++++|+ .|+.+|-|.+-.-.+-++..|+.
T Consensus 531 ~~~~~~i~~l~~~Gi-~v~miTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 531 PGVKEAVTTLITGGV-RIIMITGDSQETAVSIARRLGMP 568 (884)
T ss_pred hHHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCCC
Confidence 455677888999999 69999999999999999999985
No 209
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=24.55 E-value=1e+02 Score=19.28 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=6.1
Q ss_pred hHHHcHHHHHhC
Q psy5401 7 GYLAKEKDLKAK 18 (109)
Q Consensus 7 ~f~~~~~~f~~~ 18 (109)
.|....++++++
T Consensus 17 ~~~~l~~~l~~~ 28 (101)
T cd03416 17 ALEALAERLRER 28 (101)
T ss_pred HHHHHHHHHHhh
Confidence 344555555544
No 210
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=24.52 E-value=1.7e+02 Score=25.54 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=31.7
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+..+++++.|+ +++-+|-|.+-+-++-+++.|+.
T Consensus 444 ~~a~e~I~~Lr~~GI-~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 444 DGLVERFRELREMGI-ETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHHHHHHHCCC-eEEEECCCCHHHHHHHHHHcCCc
Confidence 445567788899999 68999999999999999998884
No 211
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.46 E-value=1.9e+02 Score=21.16 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=34.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+-.+....++++|. .|+.||---.|-.+.-++.+|+..
T Consensus 79 ~~ga~elv~~lk~~G~-~v~iiSgg~~~lv~~ia~~lg~d~ 118 (212)
T COG0560 79 TPGAEELVAALKAAGA-KVVIISGGFTFLVEPIAERLGIDY 118 (212)
T ss_pred CccHHHHHHHHHHCCC-EEEEEcCChHHHHHHHHHHhCCch
Confidence 4677788889999999 699999999999999999888753
No 212
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=24.23 E-value=97 Score=24.10 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.0
Q ss_pred HHHcHHHHHhCCCCEEEEEecC
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVN 29 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~d 29 (109)
..+..+++++.|+|.||++|=-
T Consensus 196 ~~~~v~~Lr~~gvD~II~LsH~ 217 (313)
T cd08162 196 IQPSIDALTAQGINKIILLSHL 217 (313)
T ss_pred HHHHHHHHHHCCCCEEEEEecc
Confidence 4456888898999999998876
No 213
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.23 E-value=67 Score=18.64 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=16.1
Q ss_pred chHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 55 LEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 55 ~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
+++|+.||+.-... | .-..|+++|.
T Consensus 33 H~lA~~~~L~S~S~--G-~g~~R~v~v~ 57 (58)
T cd02646 33 HKLANCYNLKSKSR--G-KGKKRFVTVT 57 (58)
T ss_pred HHHHHHcCCccccc--c-cCCceEEEEE
Confidence 36889999876532 3 1256887663
No 214
>PF01123 Stap_Strp_toxin: Staphylococcal/Streptococcal toxin, OB-fold domain; InterPro: IPR006173 Staphylococcus aureus is a Gram-positive coccus that grows in clusters or pairs, and is the major cause of nosocomial infections due to its multiple antibiotic resistant nature []. Patients who are immunocompromised (e.g., those suffering from third degree burns or chronic illness) are at risk from deep staphylococcal infections, such as osteomyelitis and pneumonia. Most skin infections are also caused by this bacterium. Many virulence mechanisms are employed by Staphylococci to induce pathogenesis: these can include polysaccharide capsules and exotoxins []. One of the major virulence exotoxins is toxic shock syndrome toxin (TSST), which is secreted by the organism upon successful invasion. It causes a major inflammatory response in the host via superantigenic properties, and is the causative agent of toxic shock syndrome. The structure of the TSST protein was originally determined to 2.5A by means of X-ray crystallography []. The N- and C-terminal domains both contain regions involved in MHC class II association; the C-terminal domain is also implicated in binding the T-cell receptor. Overall, the structure resembles that of Staphylococcal enterotoxin B (SEB), but differs in its N terminus and in the degree to which a long central helix is covered by surface loops []. The region around the carboxyl end of this helix is proposed to govern the superantigenic properties of TSST. An adjacent region along this helix is thought to be critical in the ability of TSST to induce toxic shock syndrome. Most recently, the structures of five mutants of TSST have been determined to 1.95A []. The mutations are in the central alpha-helix, and allow mapping of portions of TSST involved in superantigenicity and lethality.; GO: 0009405 pathogenesis; PDB: 1XXG_A 1KTK_D 1HQR_D 2NTS_A 1FNW_E 1FNU_C 1L0X_B 1FNV_D 1UUP_B 1HA5_C ....
Probab=24.20 E-value=37 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.1
Q ss_pred HcHHHHHhCCCCEEEEEec
Q psy5401 10 AKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~ 28 (109)
+..++|+.+.|| |+|++-
T Consensus 48 ~~a~~fKgKkVD-IfG~~Y 65 (87)
T PF01123_consen 48 DLAKKFKGKKVD-IFGLSY 65 (87)
T ss_dssp HHHHHHTTSEEE-EEEEEB
T ss_pred HHHHhhcCCEEE-EEeccc
Confidence 467889999996 999985
No 215
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=24.18 E-value=1.4e+02 Score=18.88 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=6.1
Q ss_pred eEEeec-CCchHhHh
Q psy5401 47 IRFLAD-PNLEFTKK 60 (109)
Q Consensus 47 i~~lsD-~~~~~~k~ 60 (109)
+-.+++ .+..+++.
T Consensus 90 iv~iT~~~~~~l~~~ 104 (139)
T cd05013 90 VIAITDSANSPLAKL 104 (139)
T ss_pred EEEEcCCCCChhHHh
Confidence 433333 44445443
No 216
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=24.06 E-value=2e+02 Score=22.29 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=10.2
Q ss_pred EEEEEecCCHHHHHHHH
Q psy5401 22 EIFCIAVNDAFVMEAWC 38 (109)
Q Consensus 22 ~V~~iS~dd~f~~~aW~ 38 (109)
.|++=.+|++-.++.+.
T Consensus 211 kV~vWTVn~~~~~~~ll 227 (265)
T cd08576 211 KVYGWTSDKGSSVRKLL 227 (265)
T ss_pred eEEEEeCCCHHHHHHHH
Confidence 46666777765555443
No 217
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=86 Score=22.65 Aligned_cols=89 Identities=20% Similarity=0.214 Sum_probs=51.0
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCC--------HHHHHHHHHh-cCCCCceEEeec--CCchHh-HhhCCcccc-c
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVND--------AFVMEAWCRK-NNAEGKIRFLAD--PNLEFT-KKLGVEHEI-P 68 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd--------~f~~~aW~~~-~~~~~~i~~lsD--~~~~~~-k~~G~~~~~-~ 68 (109)
+-|..++...|++++++|. +|++...|. .--.+++|+. .|.. |+|++= -+|+=+ =.|-.+... +
T Consensus 40 TpQYegLe~Ly~ky~~~Gf-~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt--Fp~f~Ki~VnG~~a~PLy~~L~~~~~ 116 (162)
T COG0386 40 TPQYEGLEALYKKYKDKGF-EVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT--FPMFSKIDVNGKNAHPLYKYLKEQKP 116 (162)
T ss_pred cHhHHHHHHHHHHHhhCCc-EEEeccccccccCCCCCHHHHHHHHHhccCce--eeeeeEEeecCCCCCcHHHHHHhcCC
Confidence 3456677889999999999 799998763 4456677754 3553 787764 233211 111111111 1
Q ss_pred c-C-CceeEe-EEEEEEe-CCeEEEEEEe
Q psy5401 69 V-L-GGWRSK-RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~-~-Gg~r~~-R~~fiVd-dG~V~~~~v~ 93 (109)
. + |...-| =.=|+|| ||.|+..+-.
T Consensus 117 g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p 145 (162)
T COG0386 117 GKLGGKDIKWNFTKFLVDRDGNVVKRFSP 145 (162)
T ss_pred CCccCCccceeeEEEEEcCCCcEEEeeCC
Confidence 0 1 211222 2348999 9988766543
No 218
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=23.77 E-value=1.8e+02 Score=22.01 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
....+.++++++.|+|-||++|=-.....+.+++..
T Consensus 169 ~~~~~~v~~lr~~~~D~II~l~H~G~~~d~~la~~~ 204 (281)
T cd07409 169 EAAQKEADKLKAQGVNKIIALSHSGYEVDKEIARKV 204 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCchhHHHHHHcC
Confidence 345566788888899989999888777777788765
No 219
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.71 E-value=1.8e+02 Score=25.32 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=39.5
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc------CCCCceEEeec--CCchHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN------NAEGKIRFLAD--PNLEFT 58 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~------~~~~~i~~lsD--~~~~~~ 58 (109)
.+.+=++...++.++|++ |+=+++.+.-.-++..+-. |. ++|+++| .+.+++
T Consensus 43 D~~atv~Qi~~L~~aGce-iVRvtvp~~~~A~al~~I~~~L~~~g~--~iPLVADIHF~~~~A 102 (606)
T PRK00694 43 DVDGTVRQICALQEWGCD-IVRVTVQGLKEAQACEHIKERLIQQGI--SIPLVADIHFFPQAA 102 (606)
T ss_pred cHHHHHHHHHHHHHcCCC-EEEEcCCCHHHHHhHHHHHHHHhccCC--CCCEEeecCCChHHH
Confidence 344556778889999995 9999999999888876422 33 3999999 455655
No 220
>PF07824 Chaperone_III: Type III secretion chaperone domain; InterPro: IPR013095 Type III secretion chaperones are involved in delivering virulence effector proteins from bacterial pathogens directly into eukaryotic cells. The chaperones may prevent aggregation and degradation of their substrates, may target the effector to the secretion apparatus, and may ensure a secretion-component unfolded conformation of their specific substrate. One member of this family, SigE (O30917 from SWISSPROT) forms homodimers in crystal. The monomers have a novel fold with an alpha-beta(3)-alpha-beta(2)-alpha topology []. ; PDB: 1K3S_B.
Probab=23.68 E-value=1.4e+02 Score=20.25 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=20.1
Q ss_pred hHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEEecCCCcee
Q psy5401 56 EFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLT 100 (109)
Q Consensus 56 ~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v~~~~~~~~ 100 (109)
.+.+++|+.++.. --+++|||+.-.|.+-+.+.-.+-
T Consensus 6 ~lydALGl~i~~d--------epal~iddd~~IYf~e~~~~lem~ 42 (112)
T PF07824_consen 6 RLYDALGLDIPED--------EPALIIDDDLQIYFNESDDSLEMC 42 (112)
T ss_dssp HHHHHCT-----------------EEECTTEEEEEEE-TTEEEEE
T ss_pred HHHHHhCCCCCCC--------CceEEecCCeEEEEecCCcceeee
Confidence 3568889886532 245899999999998876544433
No 221
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.63 E-value=52 Score=19.65 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=10.6
Q ss_pred EEEEEEe-CCeEEE
Q psy5401 77 RYSMVVD-DGKITQ 89 (109)
Q Consensus 77 R~~fiVd-dG~V~~ 89 (109)
.++||+| +|.|.+
T Consensus 54 g~~~ivd~~G~ii~ 67 (81)
T PF02743_consen 54 GYAFIVDKNGTIIA 67 (81)
T ss_dssp BEEEEEETTSBBCE
T ss_pred EEEEEEECCCCEEE
Confidence 4889999 998765
No 222
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=23.57 E-value=1.6e+02 Score=16.90 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=20.2
Q ss_pred HHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCC
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAE 44 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~ 44 (109)
++...+.+++....+++.|-+|+ ..-..+|++..|..
T Consensus 13 l~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~ 52 (69)
T cd00291 13 VLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHE 52 (69)
T ss_pred HHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCE
Confidence 44555566554333344444444 56667777777653
No 223
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=23.44 E-value=1.3e+02 Score=17.70 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=13.9
Q ss_pred EEEEEecCCHHHHHHHHHhcCC
Q psy5401 22 EIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 22 ~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.-+++.++|.....+..++.|.
T Consensus 66 ~~~~~~v~d~~~~~~~l~~~g~ 87 (114)
T cd07245 66 DHIAFRVDDLDAFRARLKAAGV 87 (114)
T ss_pred ceEEEEeCCHHHHHHHHHHcCC
Confidence 4688999995555554454444
No 224
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=23.38 E-value=93 Score=24.34 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=33.2
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHH-------HHHHHHhc---CCCCceEEeec--CCchHhHhh
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFV-------MEAWCRKN---NAEGKIRFLAD--PNLEFTKKL 61 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~-------~~aW~~~~---~~~~~i~~lsD--~~~~~~k~~ 61 (109)
|...+.++++++.|+++|++++.=..|+ .+.+.+.. +..-++.++.. .+..+.+++
T Consensus 100 P~i~~~l~~l~~~g~~~ivvlPLyPqyS~~ttgs~~~~~~~~~~~~~~~~~~~~i~~~~~~p~yi~a~ 167 (316)
T PF00762_consen 100 PSIEDALEELKADGVDRIVVLPLYPQYSSSTTGSYLDEVERALKKSRPNPKVRFIPSFYDHPAYIEAL 167 (316)
T ss_dssp SBHHHHHHHHHHTT-SEEEEEESSSS--TTTHHHHHHHHHHHHHHTHSSSEEEEE---TT-HHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeEEEEeCCCchhHhhHHHHHHHHHHHHHhcCCCCeEEEeCCccCCHHHHHHH
Confidence 6777889999999999999998766554 33443332 12224778877 344555555
No 225
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=23.20 E-value=54 Score=20.75 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.9
Q ss_pred CcchhHHHcH-HHHHhCCCCEEEEEecCCHHHH
Q psy5401 3 THLPGYLAKE-KDLKAKGIHEIFCIAVNDAFVM 34 (109)
Q Consensus 3 ~hlp~f~~~~-~~f~~~Gvd~V~~iS~dd~f~~ 34 (109)
-.+|.|.+.+ ++=+++|. .|+-|+.||-|+-
T Consensus 35 idvPv~d~~WIE~Hr~LGL-~vvPv~~~ddfv~ 66 (78)
T PF10622_consen 35 IDVPVYDEEWIEEHRKLGL-IVVPVSEDDDFVG 66 (78)
T ss_pred eeccccCHHHHHHHHhCCe-EEEeccccccHHH
Confidence 3577787655 44568999 7999999999974
No 226
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=23.19 E-value=3e+02 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=31.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
++.-.+.+.+++++|+ .++-+|--++.....+.+.+++.
T Consensus 18 ~~~~~~~i~~l~~~g~-~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 18 WGPAKEVLERLQELGI-PVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred chHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCC
Confidence 4555677888899999 58888899999999999888764
No 227
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=23.17 E-value=97 Score=21.10 Aligned_cols=21 Identities=14% Similarity=0.389 Sum_probs=9.5
Q ss_pred hhHHHcHHHHHhCCCCEEEEE
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCI 26 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~i 26 (109)
|...+.++++.+.|+..|+.+
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~ 97 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVV 97 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEE
Confidence 334444444444454444443
No 228
>PF05932 CesT: Tir chaperone protein (CesT) family; InterPro: IPR010261 This family consists of a number of bacterial sequences, which are highly similar to the Tir chaperone protein in Escherichia coli. In many Gram-negative bacteria, a key indicator of pathogenic potential is the possession of a specialised type III secretion system, which is utilised to deliver virulence effector proteins directly into the host cell cytosol. Many of the proteins secreted from such systems require small cytosolic chaperones to maintain the secreted substrates in a secretion-competent state. CesT serves a chaperone function for the enteropathogenic E. coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment [].; GO: 0009405 pathogenesis, 0050708 regulation of protein secretion, 0005737 cytoplasm; PDB: 1K3E_A 3KXY_E 1S28_C 1JYA_B 1K6Z_B 2BSH_A 2BSJ_B 2BHO_A 2BSI_B 3EPU_A ....
Probab=23.13 E-value=2e+02 Score=17.82 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=20.4
Q ss_pred hHhHhhCC-ccccccCCceeEeEEEEEEeCCeEEEEEEecCCCcee
Q psy5401 56 EFTKKLGV-EHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLT 100 (109)
Q Consensus 56 ~~~k~~G~-~~~~~~~Gg~r~~R~~fiVddG~V~~~~v~~~~~~~~ 100 (109)
+|++.+|+ ..+...-| ++.+.+ |+....+...++...+-
T Consensus 5 ~l~~~lgl~~l~~d~~g-----~~~l~~-~~~~~~~~~~~~~~~l~ 44 (119)
T PF05932_consen 5 ELGERLGLPPLEFDEDG-----ACSLTV-DGDFLILEFDEDSDWLL 44 (119)
T ss_dssp HHHHHHTCSCEESSTTS-----EEEEEE-TTTEEEEEEEESTTEEE
T ss_pred HHHHHhCCCCCCCCCCC-----EEEEEE-CCeEEEEEEecCCCEEE
Confidence 67888998 33332223 566777 44444444444443443
No 229
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=23.09 E-value=98 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=20.2
Q ss_pred cc-hhHHHcHHHHHhCCCCEEEEEecC
Q psy5401 4 HL-PGYLAKEKDLKAKGIHEIFCIAVN 29 (109)
Q Consensus 4 hl-p~f~~~~~~f~~~Gvd~V~~iS~d 29 (109)
|+ |.|.+.+.+-.++|| +|+++...
T Consensus 190 ~~Dp~fa~~l~~A~~~GV-ev~a~~~~ 215 (232)
T TIGR00230 190 EGDEEYYRLLRRAHEAGV-EVRPYQVE 215 (232)
T ss_pred ccCHHHHHHHHHHHHCCC-EEEEEEEE
Confidence 44 889999988889999 68888763
No 230
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=22.99 E-value=1.4e+02 Score=19.80 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=33.0
Q ss_pred EEEEEecCCHHHHHHHHHhcC-----CC-CceEE---eec--CCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEEE
Q psy5401 22 EIFCIAVNDAFVMEAWCRKNN-----AE-GKIRF---LAD--PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQL 90 (109)
Q Consensus 22 ~V~~iS~dd~f~~~aW~~~~~-----~~-~~i~~---lsD--~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~ 90 (109)
-|+==|+-=|-+..||.+-.. .. -++.+ +.+ -.-++++.||+.-+.| -++++.||+++|=
T Consensus 23 ~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP---------Q~ili~~g~~v~~ 93 (105)
T PF11009_consen 23 LIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP---------QVILIKNGKVVWH 93 (105)
T ss_dssp EEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SS---------EEEEEETTEEEEE
T ss_pred EEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCC---------cEEEEECCEEEEE
Confidence 455567777777777765321 10 01333 333 3457889999976632 3588899999885
Q ss_pred E
Q psy5401 91 N 91 (109)
Q Consensus 91 ~ 91 (109)
.
T Consensus 94 a 94 (105)
T PF11009_consen 94 A 94 (105)
T ss_dssp E
T ss_pred C
Confidence 4
No 231
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=22.95 E-value=2e+02 Score=19.87 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=32.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|++.+.+..+++. + .+..+|.......+.+.+.+++.
T Consensus 70 ~pg~~e~L~~L~~~-~-~~~IvS~~~~~~~~~~l~~~gl~ 107 (205)
T PRK13582 70 LPGAVEFLDWLRER-F-QVVILSDTFYEFAGPLMRQLGWP 107 (205)
T ss_pred CCCHHHHHHHHHhc-C-CEEEEeCCcHHHHHHHHHHcCCc
Confidence 58888899999988 8 58888988888888888888864
No 232
>PRK10671 copA copper exporting ATPase; Provisional
Probab=22.84 E-value=1.9e+02 Score=25.52 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=32.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+.+++|++.|+ .++.+|.|.....++.++..|+.
T Consensus 653 ~~a~~~i~~L~~~gi-~v~~~Tgd~~~~a~~ia~~lgi~ 690 (834)
T PRK10671 653 SDSVAALQRLHKAGY-RLVMLTGDNPTTANAIAKEAGID 690 (834)
T ss_pred hhHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCC
Confidence 555667788899999 69999999999999999998885
No 233
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=22.75 E-value=2.5e+02 Score=18.88 Aligned_cols=38 Identities=11% Similarity=0.015 Sum_probs=27.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+-++.++ .++ ++..+|.........-.+..++.
T Consensus 47 ~pG~~e~L~~L~-~~~-~l~I~Ts~~~~~~~~il~~l~~~ 84 (148)
T smart00577 47 RPGVDEFLKRAS-ELF-ELVVFTAGLRMYADPVLDLLDPK 84 (148)
T ss_pred CCCHHHHHHHHH-hcc-EEEEEeCCcHHHHHHHHHHhCcC
Confidence 577778888887 578 57777777776666666666663
No 234
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.72 E-value=1.6e+02 Score=17.22 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=10.0
Q ss_pred hHHHcHHHHHhCCCCEEEEEe
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIA 27 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS 27 (109)
...+..++++++|+ .+++|+
T Consensus 62 ~~~~~~~~a~~~g~-~ii~it 81 (87)
T cd04795 62 ELLAALEIAKELGI-PVIAIT 81 (87)
T ss_pred HHHHHHHHHHHcCC-eEEEEe
Confidence 34444455555555 355554
No 235
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=22.52 E-value=1.5e+02 Score=19.04 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=29.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD 52 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD 52 (109)
.|+-.|.....+|+++|- +|. +.+...|.... +..|+. +.-+..
T Consensus 10 Ghv~P~lala~~L~~rGh-~V~-~~~~~~~~~~v--~~~Gl~--~~~~~~ 53 (139)
T PF03033_consen 10 GHVYPFLALARALRRRGH-EVR-LATPPDFRERV--EAAGLE--FVPIPG 53 (139)
T ss_dssp HHHHHHHHHHHHHHHTT--EEE-EEETGGGHHHH--HHTT-E--EEESSS
T ss_pred hHHHHHHHHHHHHhccCC-eEE-Eeecccceecc--cccCce--EEEecC
Confidence 378889999999999999 476 55555555555 677775 444433
No 236
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=22.45 E-value=1.6e+02 Score=21.31 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=31.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR 48 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~ 48 (109)
..+|+..+.+.+++++|+ .+...|....-......+..++...|.
T Consensus 86 ~~~pGv~~~l~~L~~~~i-~~avaS~s~~~~~~~~L~~~gl~~~f~ 130 (221)
T COG0637 86 KPIPGVVELLEQLKARGI-PLAVASSSPRRAAERVLARLGLLDYFD 130 (221)
T ss_pred CCCccHHHHHHHHHhcCC-cEEEecCChHHHHHHHHHHccChhhcc
Confidence 468999999999999998 344444444456666666777755443
No 237
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=22.40 E-value=1.9e+02 Score=26.59 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=32.7
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+-.+..++++++|+ .|+-|+-|.+-+-.+.++..|+.
T Consensus 650 ~v~~aI~~l~~aGI-kv~MiTGD~~~tA~~iA~~~Gi~ 686 (1053)
T TIGR01523 650 ESAGAVEKCHQAGI-NVHMLTGDFPETAKAIAQEVGII 686 (1053)
T ss_pred hHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHcCCC
Confidence 44567788899999 69999999999999999999985
No 238
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.37 E-value=2.1e+02 Score=17.79 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=13.0
Q ss_pred EEEEEecCCHHHHHHHHHhc
Q psy5401 22 EIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 22 ~V~~iS~dd~f~~~aW~~~~ 41 (109)
.-++++++++-...+|.+..
T Consensus 66 ~hi~f~v~~~~~v~~~~~~~ 85 (123)
T cd07262 66 THVAFAAPSREAVDAFHAAA 85 (123)
T ss_pred eEEEEECCCHHHHHHHHHHH
Confidence 36777777776666666544
No 239
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=22.35 E-value=1e+02 Score=17.97 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=11.2
Q ss_pred eeEeEEEEEEeCCeEEEEE
Q psy5401 73 WRSKRYSMVVDDGKITQLN 91 (109)
Q Consensus 73 ~r~~R~~fiVddG~V~~~~ 91 (109)
++++| |--||+|+|+-
T Consensus 28 VlArR---V~~dG~vQYLv 43 (50)
T PF14061_consen 28 VLARR---VTPDGKVQYLV 43 (50)
T ss_pred EEEEE---EcCCCcEEEEE
Confidence 56666 33499999973
No 240
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=22.31 E-value=1.2e+02 Score=21.08 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=20.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND 30 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd 30 (109)
.|+-.+.+.+|+++|. .++.+|..+
T Consensus 31 ~pgv~e~L~~L~~~g~-~l~IvSN~~ 55 (161)
T TIGR01261 31 EKGVIPALLKLKKAGY-KFVMVTNQD 55 (161)
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCc
Confidence 3778889999999999 588777764
No 241
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=22.25 E-value=1.3e+02 Score=19.23 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=12.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEE
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCI 26 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~i 26 (109)
-|.+.+.++++.+.|++.|+.+
T Consensus 44 ~P~~~~~l~~l~~~g~~~i~vv 65 (117)
T cd03414 44 RPSLPEALERLRALGARRVVVL 65 (117)
T ss_pred CCCHHHHHHHHHHcCCCEEEEE
Confidence 3555555555555555555554
No 242
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=21.99 E-value=81 Score=16.25 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=11.1
Q ss_pred HcHHHHHhCCCCEEEEEecCCH
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
+...++-++||| +|-+|.|
T Consensus 11 ~~~~~~l~~GVD---gI~Td~p 29 (30)
T PF13653_consen 11 ASWRELLDLGVD---GIMTDYP 29 (30)
T ss_dssp HHHHHHHHHT-S---EEEES-H
T ss_pred HHHHHHHHcCCC---EeeCCCC
Confidence 445667778998 5556655
No 243
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.95 E-value=3.7e+02 Score=20.52 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHH--HHHHHHhcCCCCceEEeecCC--chHhHhhC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFV--MEAWCRKNNAEGKIRFLADPN--LEFTKKLG 62 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~--~~aW~~~~~~~~~i~~lsD~~--~~~~k~~G 62 (109)
+.|...+.++++.|.|-|++++.....+ +++++ ..|+..++..+++.. ..+.+..|
T Consensus 190 ~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~g 249 (357)
T cd06337 190 DDFSSQINAFKREGVDIVTGFAIPPDFATFWRQAA-QAGFKPKIVTIAKALLFPEDVEALG 249 (357)
T ss_pred CcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHHHH-HCCCCCCeEEEeccccCHHHHHHhh
Confidence 5688888899999998665554333222 23333 456654454444432 35666665
No 244
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=21.94 E-value=2e+02 Score=21.64 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=29.7
Q ss_pred hhHHHcHHHH--HhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 6 PGYLAKEKDL--KAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 6 p~f~~~~~~f--~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
|+|.+.+..+ +..|+ +++.||-=..|-...|-+.+|+..
T Consensus 74 pgm~~~l~~l~~~~~~~-~~~IiSDaNs~fI~~iL~~~gl~~ 114 (234)
T PF06888_consen 74 PGMKELLRFLAKNQRGF-DLIIISDANSFFIETILEHHGLRD 114 (234)
T ss_pred ccHHHHHHHHHhcCCCc-eEEEEeCCcHhHHHHHHHhCCCcc
Confidence 6666667777 45688 488888888888888888888754
No 245
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=21.91 E-value=1.7e+02 Score=19.91 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=32.8
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP 53 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~ 53 (109)
+..+.-.+|+++|+ ..+++..+..-+..++++..++. .|.+=.|.
T Consensus 54 sL~~L~~~L~~~g~-~L~v~~g~~~~~l~~l~~~~~~~-~V~~~~~~ 98 (165)
T PF00875_consen 54 SLADLQESLRKLGI-PLLVLRGDPEEVLPELAKEYGAT-AVYFNEEY 98 (165)
T ss_dssp HHHHHHHHHHHTTS--EEEEESSHHHHHHHHHHHHTES-EEEEE---
T ss_pred HHHHHHHHHHhcCc-ceEEEecchHHHHHHHHHhcCcC-eeEecccc
Confidence 34566677888999 59999999999999999999974 24444443
No 246
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=21.81 E-value=2.3e+02 Score=22.15 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=32.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
+..-+++...+.++|+|-|+.-+..++--.+++++..+.
T Consensus 165 ~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~ 203 (292)
T PRK11320 165 LDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKV 203 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCC
Confidence 345567888899999998888899999999999997654
No 247
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.72 E-value=1.2e+02 Score=23.38 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=31.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
+.+|+=.+-++.++++|. .++-+|+|+-.+-..-.+.+
T Consensus 24 ~~ipga~e~l~~L~~~g~-~~iflTNn~~~s~~~~~~~L 61 (269)
T COG0647 24 EAIPGAAEALKRLKAAGK-PVIFLTNNSTRSREVVAARL 61 (269)
T ss_pred ccCchHHHHHHHHHHcCC-eEEEEeCCCCCCHHHHHHHH
Confidence 457888899999999999 79999999887777555544
No 248
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=21.69 E-value=1.1e+02 Score=19.28 Aligned_cols=20 Identities=25% Similarity=0.576 Sum_probs=15.3
Q ss_pred eEeEEEEEEeCCeEEEEEEec
Q psy5401 74 RSKRYSMVVDDGKITQLNIEP 94 (109)
Q Consensus 74 r~~R~~fiVddG~V~~~~v~~ 94 (109)
--.|| ||+.+|.+.|-.-.+
T Consensus 15 Wk~Rw-FvL~~g~L~Yyk~~~ 34 (91)
T cd01247 15 WQDRY-FVLKEGNLSYYKSEA 34 (91)
T ss_pred CceEE-EEEECCEEEEEecCc
Confidence 44588 788999999987654
No 249
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=21.66 E-value=2.3e+02 Score=19.96 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=21.8
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHHHHHHHH
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 39 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~ 39 (109)
..+.+.++...++|-|+..+++++.+...+.+
T Consensus 44 ~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~ 75 (268)
T cd06323 44 QLNDIEDLITRGVDAIIINPTDSDAVVPAVKA 75 (268)
T ss_pred HHHHHHHHHHcCCCEEEEcCCChHHHHHHHHH
Confidence 45667777777898777778777665555443
No 250
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=21.59 E-value=2.1e+02 Score=23.88 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCCcchhH---HHcHHHHHhCCCCEEEEEecCCHH
Q psy5401 1 MKTHLPGY---LAKEKDLKAKGIHEIFCIAVNDAF 32 (109)
Q Consensus 1 ~~~hlp~f---~~~~~~f~~~Gvd~V~~iS~dd~f 32 (109)
|+.|+|.. .-.++.|++.||+.|+|++-....
T Consensus 3 ~~~~~~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~ 37 (569)
T PRK09259 3 MSDQLQLTDGFHLVIDALKLNGIDTIYGVVGIPIT 37 (569)
T ss_pred cccccCCCcHHHHHHHHHHHcCCCEEEeCCCcchH
Confidence 67777774 446777889999999999886443
No 251
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=21.40 E-value=1.4e+02 Score=20.92 Aligned_cols=27 Identities=37% Similarity=0.499 Sum_probs=20.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAF 32 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f 32 (109)
.|+..+.+..++++|+ .+..+|.+...
T Consensus 96 ~~~~~~~L~~L~~~g~-~l~i~Sn~~~~ 122 (211)
T TIGR02247 96 RPSMMAAIKTLRAKGF-KTACITNNFPT 122 (211)
T ss_pred ChhHHHHHHHHHHCCC-eEEEEeCCCCc
Confidence 4777888899999999 57777776543
No 252
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.33 E-value=1.9e+02 Score=18.75 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=20.8
Q ss_pred EEEEEe--cCCHHHHHHHH--HhcCCCCceEEeec-CCchHhHhhCC
Q psy5401 22 EIFCIA--VNDAFVMEAWC--RKNNAEGKIRFLAD-PNLEFTKKLGV 63 (109)
Q Consensus 22 ~V~~iS--~dd~f~~~aW~--~~~~~~~~i~~lsD-~~~~~~k~~G~ 63 (109)
-+++|| -+++.+.++-. ++.|.+ +-.+.+ ++..+++.-..
T Consensus 50 l~I~iS~SG~t~~~~~~~~~a~~~g~~--vi~iT~~~~s~la~~ad~ 94 (120)
T cd05710 50 VVILASHSGNTKETVAAAKFAKEKGAT--VIGLTDDEDSPLAKLADY 94 (120)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHcCCe--EEEEECCCCCcHHHhCCE
Confidence 466666 34555555543 344442 444444 66666664443
No 253
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=21.23 E-value=2.2e+02 Score=20.23 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=26.4
Q ss_pred HcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
+..+.+++.|+ .|+.+|..+..-...+.+.+.-
T Consensus 3 ~~~~~y~~~gy-~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKLGY-PVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHTTS-EEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCC-cEEEEeCCCCcCHHHHHHHhcC
Confidence 45667788999 6999999998888888887765
No 254
>PF14864 Alkyl_sulf_C: Alkyl sulfatase C-terminal; PDB: 2CG2_A 2CG3_A 2CFU_A 2CFZ_A 2YHE_C.
Probab=21.22 E-value=1.9e+02 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=19.9
Q ss_pred eEEEEEEeCCeEEEEEEec-CCCceeeec
Q psy5401 76 KRYSMVVDDGKITQLNIEP-DGTGLTCSL 103 (109)
Q Consensus 76 ~R~~fiVddG~V~~~~v~~-~~~~~~~s~ 103 (109)
.+|.+.+.||++.+....+ ...+++++.
T Consensus 45 e~~~l~l~NgvL~~~~~~~~~~ad~tlt~ 73 (125)
T PF14864_consen 45 EQYTLELRNGVLNYRKGSPSPDADATLTL 73 (125)
T ss_dssp EEEEEEEETTEEEEEET---TT-SEEEEE
T ss_pred CeEEEEEECCEEEeecCCCCCCCCEEEEE
Confidence 4888999999999987544 556777764
No 255
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.15 E-value=95 Score=21.31 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=13.7
Q ss_pred CCCcchhHHHcHHHHHhCCC
Q psy5401 1 MKTHLPGYLAKEKDLKAKGI 20 (109)
Q Consensus 1 ~~~hlp~f~~~~~~f~~~Gv 20 (109)
|++|++.+.+..+.++++|.
T Consensus 60 ~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 60 YGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred ccCCHHHHHHHHHHHHHCCC
Confidence 45677777777777777666
No 256
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=21.15 E-value=2.3e+02 Score=20.11 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=34.4
Q ss_pred HcHHHHHhCCCCEEEEEecCCHHHHHHHHHh---cCCCCceEEeecCCchHhH
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK---NNAEGKIRFLADPNLEFTK 59 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~---~~~~~~i~~lsD~~~~~~k 59 (109)
+....|++.|+++|+..=..+.++...=+.. .|. ++.+++|....+..
T Consensus 128 ~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~--~v~v~~Da~~~~~~ 178 (196)
T cd01011 128 GLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGF--EVRVLEDACRAVDP 178 (196)
T ss_pred hHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCC--EEEEeccccCCCCH
Confidence 4556678899998888877777777665543 344 48999998776654
No 257
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=21.11 E-value=1.4e+02 Score=22.51 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=20.4
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHH
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAF 32 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f 32 (109)
.|.+.++++.+.|.|+|++|+.-+..
T Consensus 67 ~~~~~f~~~~~~gyd~ii~i~iSs~L 92 (280)
T PF02645_consen 67 EFEEAFEKLLEEGYDEIIVITISSGL 92 (280)
T ss_dssp HHHHHHHHHHHTTTSEEEEEES-TTT
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCcch
Confidence 57788888778899999999887654
No 258
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.02 E-value=82 Score=18.45 Aligned_cols=20 Identities=10% Similarity=0.461 Sum_probs=17.6
Q ss_pred EEecCCHHHHHHHHHhcCCC
Q psy5401 25 CIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 25 ~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+.++++-.+-|++.+|..
T Consensus 14 ~I~~~e~~ev~ywa~~~gvt 33 (57)
T PF12244_consen 14 RIDLSEPYEVRYWAKRFGVT 33 (57)
T ss_pred hcCCCCHHHHHHHHHHHCcC
Confidence 47889999999999999874
No 259
>KOG3559|consensus
Probab=20.90 E-value=99 Score=25.99 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.2
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
-+.|||+ ||+|-|+.-.
T Consensus 90 GF~fvva~dGkimYISET 107 (598)
T KOG3559|consen 90 GFIFVVAPDGKIMYISET 107 (598)
T ss_pred ceEEEEeCCCCEEEEecc
Confidence 3889999 9999998654
No 260
>PRK07475 hypothetical protein; Provisional
Probab=20.87 E-value=82 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=21.9
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND 30 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd 30 (109)
-+|.|.+...+|.+.|+| .++++-|.
T Consensus 63 ~~~~l~~aa~~L~~~G~d-~I~~~Cgt 88 (245)
T PRK07475 63 LLDAFVAAARELEAEGVR-AITTSCGF 88 (245)
T ss_pred HHHHHHHHHHHHHHcCCC-EEEechHH
Confidence 368899999999999997 88887764
No 261
>PRK12435 ferrochelatase; Provisional
Probab=20.79 E-value=1.1e+02 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred hhHHHcHHHHHhCCCCEEEEEec
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
|...+.++++++.|+++|++++.
T Consensus 90 P~i~~~l~~l~~~g~~~iv~lpL 112 (311)
T PRK12435 90 PFIEDAVEQMHNDGIEEAISIVL 112 (311)
T ss_pred CCHHHHHHHHHHcCCCeEEEEEC
Confidence 66677899999999999999973
No 262
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.72 E-value=1.2e+02 Score=19.39 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=4.9
Q ss_pred CCHHHHHHHH
Q psy5401 29 NDAFVMEAWC 38 (109)
Q Consensus 29 dd~f~~~aW~ 38 (109)
++||+|+.|.
T Consensus 21 ~cpf~~rvrl 30 (91)
T cd03061 21 NCPFCQRLFM 30 (91)
T ss_pred CChhHHHHHH
Confidence 3455555553
No 263
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=20.64 E-value=1.4e+02 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=19.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND 30 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd 30 (109)
.|+..+.+.++++.|+ .+..+|..+
T Consensus 31 ~pgv~e~L~~Lk~~g~-~l~I~Tn~~ 55 (181)
T PRK08942 31 IPGSIEAIARLKQAGY-RVVVATNQS 55 (181)
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5778888999999999 566666554
No 264
>PRK00035 hemH ferrochelatase; Reviewed
Probab=20.61 E-value=1.2e+02 Score=23.58 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=23.2
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHH
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAF 32 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f 32 (109)
|...+-++++.+.|+++|++++.--.|
T Consensus 105 P~i~eal~~l~~~G~~~IivlPL~p~~ 131 (333)
T PRK00035 105 PSIEEALEALKADGVDRIVVLPLYPQY 131 (333)
T ss_pred CCHHHHHHHHHhcCCCEEEEEECCCcc
Confidence 777888999999999999999987633
No 265
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=20.52 E-value=73 Score=18.60 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.3
Q ss_pred ceEEeec
Q psy5401 46 KIRFLAD 52 (109)
Q Consensus 46 ~i~~lsD 52 (109)
++|.|-|
T Consensus 51 ~vP~L~~ 57 (76)
T cd03050 51 KVPAIVD 57 (76)
T ss_pred CCCEEEE
Confidence 3554444
No 266
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=20.51 E-value=1.1e+02 Score=22.71 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=35.1
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCCC--ceEEeecCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAEG--KIRFLADPN 54 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~~--~i~~lsD~~ 54 (109)
-+|+-++.+..+.++|+ +|+-||.=+ --...+|-++.|..+ ++.|.++..
T Consensus 116 aip~a~~l~~~~~~~G~-~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~ 170 (229)
T PF03767_consen 116 AIPGALELYNYARSRGV-KVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKD 170 (229)
T ss_dssp EETTHHHHHHHHHHTTE-EEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESS
T ss_pred ccHHHHHHHHHHHHCCC-eEEEEecCCchhHHHHHHHHHHcCCCccchhccccccc
Confidence 37888899999999999 688887522 335556667777643 366666654
No 267
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=20.39 E-value=3.5e+02 Score=19.98 Aligned_cols=39 Identities=23% Similarity=0.162 Sum_probs=29.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|...+.+.+++++|+ .++.+|.-.+.....-.+.+++.
T Consensus 23 ~~~~~~ai~~l~~~Gi-~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 23 YEPAKPALKALKEKGI-PVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred cHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCC
Confidence 3556678889999999 57777777777777777777764
No 268
>KOG1448|consensus
Probab=20.14 E-value=1.1e+02 Score=24.41 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=30.8
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 42 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~ 42 (109)
.+.+..+.|.+.|+++|+.+++--+|.-.+|..-..
T Consensus 229 Tl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~ 264 (316)
T KOG1448|consen 229 TLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNE 264 (316)
T ss_pred hHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhh
Confidence 356778888999999999999999999999986543
No 269
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=20.13 E-value=2.3e+02 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=32.9
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+..+-.++++++|+ .++-++-|.+..-.+-++..|+.
T Consensus 540 ~~v~e~I~~l~~aGI-~v~miTGD~~~tA~~ia~~~gi~ 577 (917)
T TIGR01116 540 PEVADAIEKCRTAGI-RVIMITGDNKETAEAICRRIGIF 577 (917)
T ss_pred hhHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHcCCC
Confidence 455667788899999 69999999999999999999874
Done!