Query psy5401
Match_columns 109
No_of_seqs 129 out of 1048
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 16:34:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h86_A Peroxiredoxin type-2; o 100.0 1.8E-36 6.1E-41 221.7 10.4 107 2-109 87-197 (199)
2 2xhf_A Peroxiredoxin 5; oxidor 100.0 2.9E-31 9.8E-36 189.7 8.3 108 2-109 59-167 (171)
3 4f82_A Thioredoxin reductase; 100.0 4.1E-29 1.4E-33 179.6 10.5 106 3-109 66-172 (176)
4 1xiy_A Peroxiredoxin, pfaop; a 100.0 2.2E-28 7.6E-33 175.9 9.9 106 3-109 62-175 (182)
5 3mng_A Peroxiredoxin-5, mitoch 99.9 3.9E-25 1.3E-29 157.0 8.9 106 3-109 62-171 (173)
6 3uma_A Hypothetical peroxiredo 99.9 4.8E-25 1.6E-29 157.9 8.9 106 4-109 76-182 (184)
7 2pwj_A Mitochondrial peroxired 99.9 1.2E-22 4E-27 142.9 10.3 106 4-109 63-169 (171)
8 3sbc_A Peroxiredoxin TSA1; alp 99.9 1.2E-22 4.1E-27 149.9 8.6 94 2-100 69-168 (216)
9 1tp9_A Peroxiredoxin, PRX D (t 99.9 4E-22 1.4E-26 138.2 10.5 105 3-109 54-160 (162)
10 2wfc_A Peroxiredoxin 5, PRDX5; 99.9 4.6E-22 1.6E-26 139.7 9.0 106 4-109 51-157 (167)
11 3tue_A Tryparedoxin peroxidase 99.9 5.9E-22 2E-26 146.5 7.7 94 2-100 73-172 (219)
12 4gqc_A Thiol peroxidase, perox 99.8 1.7E-20 5.7E-25 131.1 5.9 101 2-108 50-152 (164)
13 1nm3_A Protein HI0572; hybrid, 99.8 1.2E-18 3.9E-23 127.2 10.9 105 3-108 52-159 (241)
14 4g2e_A Peroxiredoxin; redox pr 99.8 6.6E-19 2.2E-23 121.7 8.5 93 2-97 47-141 (157)
15 3keb_A Probable thiol peroxida 99.7 1.3E-16 4.5E-21 118.1 8.9 85 3-96 71-158 (224)
16 1xcc_A 1-Cys peroxiredoxin; un 99.7 2.6E-16 8.8E-21 114.9 8.0 94 3-99 49-152 (220)
17 2v2g_A Peroxiredoxin 6; oxidor 99.6 6.1E-16 2.1E-20 114.3 9.6 94 3-99 47-151 (233)
18 3tjj_A Peroxiredoxin-4; thiore 99.6 6.3E-16 2.2E-20 115.4 7.7 91 2-99 108-206 (254)
19 1prx_A HORF6; peroxiredoxin, h 99.6 9.5E-16 3.2E-20 112.2 8.1 94 3-99 49-155 (224)
20 3a2v_A Probable peroxiredoxin; 99.6 9.7E-16 3.3E-20 114.6 7.6 93 3-99 51-148 (249)
21 4eo3_A Bacterioferritin comigr 99.6 9.5E-16 3.3E-20 117.9 7.3 79 3-94 42-121 (322)
22 3qpm_A Peroxiredoxin; oxidored 99.6 1.5E-15 5E-20 112.2 7.7 89 3-98 95-191 (240)
23 1n8j_A AHPC, alkyl hydroperoxi 99.6 3.2E-15 1.1E-19 105.5 8.5 86 3-95 48-138 (186)
24 2pn8_A Peroxiredoxin-4; thiore 99.6 7.4E-15 2.5E-19 106.1 7.9 87 3-96 66-160 (211)
25 2c0d_A Thioredoxin peroxidase 99.6 1.4E-14 4.9E-19 105.7 8.6 87 3-95 74-166 (221)
26 3ixr_A Bacterioferritin comigr 99.5 4.7E-14 1.6E-18 98.9 8.9 86 3-91 69-157 (179)
27 2i81_A 2-Cys peroxiredoxin; st 99.5 4.2E-14 1.4E-18 102.2 8.1 86 3-96 70-163 (213)
28 3gkn_A Bacterioferritin comigr 99.5 1.2E-13 4E-18 94.1 9.1 86 3-91 53-141 (163)
29 2h01_A 2-Cys peroxiredoxin; th 99.5 7.7E-14 2.6E-18 98.1 7.2 88 3-98 49-144 (192)
30 1zye_A Thioredoxin-dependent p 99.5 1.4E-13 4.8E-18 99.8 8.2 87 3-96 74-168 (220)
31 1q98_A Thiol peroxidase, TPX; 99.5 6.6E-14 2.3E-18 96.5 5.2 87 2-94 60-149 (165)
32 1uul_A Tryparedoxin peroxidase 99.5 2E-13 6.9E-18 97.0 7.8 87 3-96 54-148 (202)
33 3p7x_A Probable thiol peroxida 99.4 3.6E-13 1.2E-17 92.7 8.2 84 3-95 64-149 (166)
34 3zrd_A Thiol peroxidase; oxido 99.4 1.5E-13 5.1E-18 98.4 5.9 87 2-94 95-184 (200)
35 1psq_A Probable thiol peroxida 99.4 2.4E-13 8.3E-18 93.3 6.6 84 3-94 60-145 (163)
36 2a4v_A Peroxiredoxin DOT5; yea 99.4 2.5E-12 8.7E-17 87.6 10.0 84 3-94 53-136 (159)
37 3ztl_A Thioredoxin peroxidase; 99.4 8E-13 2.7E-17 95.7 7.8 87 3-96 87-181 (222)
38 1qmv_A Human thioredoxin perox 99.4 1.1E-12 3.6E-17 92.8 7.9 87 3-96 52-146 (197)
39 2yzh_A Probable thiol peroxida 99.4 1.7E-12 5.8E-17 89.6 7.0 85 3-94 65-152 (171)
40 1we0_A Alkyl hydroperoxide red 99.3 4.1E-12 1.4E-16 88.7 9.0 86 3-95 49-139 (187)
41 3drn_A Peroxiredoxin, bacterio 99.3 7.3E-12 2.5E-16 85.6 9.3 82 3-93 47-129 (161)
42 1zof_A Alkyl hydroperoxide-red 99.3 7.6E-12 2.6E-16 88.2 8.3 85 2-94 50-142 (198)
43 2bmx_A Alkyl hydroperoxidase C 99.3 1.7E-11 5.9E-16 86.4 7.8 85 3-95 63-152 (195)
44 1xvw_A Hypothetical protein RV 99.2 1.4E-11 4.8E-16 83.3 5.0 85 3-94 54-141 (160)
45 1xvq_A Thiol peroxidase; thior 99.2 5.3E-11 1.8E-15 82.6 6.7 84 3-93 62-147 (175)
46 2jsy_A Probable thiol peroxida 99.2 3.8E-11 1.3E-15 82.0 5.8 84 3-94 62-147 (167)
47 3u5r_E Uncharacterized protein 99.0 1.3E-09 4.5E-14 78.3 8.2 78 3-93 76-162 (218)
48 1xzo_A BSSCO, hypothetical pro 98.8 2.6E-08 9E-13 67.6 8.5 89 3-94 51-155 (174)
49 2k6v_A Putative cytochrome C o 98.8 8.5E-09 2.9E-13 69.8 5.6 88 3-93 53-155 (172)
50 2ywi_A Hypothetical conserved 98.8 2.5E-08 8.6E-13 69.1 7.9 78 3-93 63-149 (196)
51 3lor_A Thiol-disulfide isomera 98.7 2.8E-08 9.6E-13 66.4 7.0 77 5-94 50-140 (160)
52 3gl3_A Putative thiol:disulfid 98.7 9.1E-08 3.1E-12 63.4 8.7 79 3-94 45-125 (152)
53 3eyt_A Uncharacterized protein 98.7 4.8E-08 1.6E-12 65.3 7.2 77 4-93 46-136 (158)
54 3fw2_A Thiol-disulfide oxidore 98.7 3.7E-08 1.3E-12 65.7 6.3 77 3-92 52-134 (150)
55 1jfu_A Thiol:disulfide interch 98.7 1.7E-08 6E-13 69.6 4.7 84 3-94 77-163 (186)
56 3lwa_A Secreted thiol-disulfid 98.7 6.2E-08 2.1E-12 66.7 7.1 82 3-93 76-165 (183)
57 3kcm_A Thioredoxin family prot 98.6 1.1E-07 3.6E-12 63.2 7.4 79 3-94 45-126 (154)
58 2cvb_A Probable thiol-disulfid 98.6 9E-08 3.1E-12 66.2 7.3 75 3-91 50-133 (188)
59 2ggt_A SCO1 protein homolog, m 98.6 1.5E-07 5.1E-12 63.1 7.9 88 3-93 41-145 (164)
60 3me7_A Putative uncharacterize 98.6 1.8E-07 6.1E-12 64.6 7.6 90 3-94 46-146 (170)
61 2rli_A SCO2 protein homolog, m 98.6 2.5E-07 8.6E-12 62.5 8.1 88 3-93 44-148 (171)
62 2lrn_A Thiol:disulfide interch 98.6 1.1E-07 3.9E-12 63.4 6.2 77 3-92 46-127 (152)
63 3hcz_A Possible thiol-disulfid 98.6 2.4E-07 8.3E-12 60.6 7.2 79 2-92 47-129 (148)
64 3ewl_A Uncharacterized conserv 98.6 2.1E-07 7.2E-12 61.1 6.9 73 4-89 45-124 (142)
65 2f9s_A Thiol-disulfide oxidore 98.6 2.8E-07 9.7E-12 61.1 7.6 78 3-93 43-122 (151)
66 2b7k_A SCO1 protein; metalloch 98.5 3.9E-08 1.3E-12 69.6 3.0 88 3-93 59-163 (200)
67 3raz_A Thioredoxin-related pro 98.5 9.2E-08 3.1E-12 63.8 4.4 80 3-93 41-124 (151)
68 2obi_A PHGPX, GPX-4, phospholi 98.5 1.4E-07 4.9E-12 65.2 5.1 88 3-93 64-168 (183)
69 3erw_A Sporulation thiol-disul 98.5 4.4E-07 1.5E-11 59.1 7.0 77 4-93 52-133 (145)
70 2i3y_A Epididymal secretory gl 98.5 1.2E-07 4.3E-12 68.7 4.6 87 4-93 73-195 (215)
71 4fo5_A Thioredoxin-like protei 98.5 7.8E-08 2.7E-12 63.6 3.3 77 3-92 49-131 (143)
72 2r37_A Glutathione peroxidase 98.5 1.4E-07 4.7E-12 67.9 4.8 88 3-93 54-177 (207)
73 2gs3_A PHGPX, GPX-4, phospholi 98.5 2.1E-07 7E-12 64.7 5.5 88 3-93 66-170 (185)
74 2l5o_A Putative thioredoxin; s 98.4 5.1E-07 1.7E-11 59.8 6.5 77 4-93 46-125 (153)
75 3kh7_A Thiol:disulfide interch 98.4 2.2E-06 7.4E-11 59.1 9.9 72 11-94 79-152 (176)
76 2lrt_A Uncharacterized protein 98.4 6.9E-07 2.4E-11 60.1 7.2 75 3-92 52-131 (152)
77 3hdc_A Thioredoxin family prot 98.4 1.7E-07 5.8E-12 63.1 3.9 77 3-94 58-135 (158)
78 3or5_A Thiol:disulfide interch 98.4 4.9E-07 1.7E-11 60.4 6.1 83 3-93 51-135 (165)
79 2vup_A Glutathione peroxidase- 98.4 1.6E-07 5.3E-12 65.6 3.2 88 3-93 65-169 (190)
80 2p31_A CL683, glutathione pero 98.4 4.7E-08 1.6E-12 67.8 0.4 87 3-93 66-165 (181)
81 2p5q_A Glutathione peroxidase 98.4 2.8E-07 9.5E-12 62.1 4.1 86 3-93 49-152 (170)
82 3eur_A Uncharacterized protein 98.4 7.5E-07 2.6E-11 58.7 5.7 77 3-92 48-131 (142)
83 2v1m_A Glutathione peroxidase; 98.3 7.5E-07 2.6E-11 59.9 5.7 88 3-93 48-151 (169)
84 2b5x_A YKUV protein, TRXY; thi 98.3 2.4E-06 8.1E-11 55.7 7.8 76 4-93 47-129 (148)
85 2hyx_A Protein DIPZ; thioredox 98.3 1.4E-06 4.8E-11 67.7 7.6 78 3-93 99-183 (352)
86 2f8a_A Glutathione peroxidase 98.3 2.2E-07 7.6E-12 66.5 2.9 88 3-93 64-191 (208)
87 3cmi_A Peroxiredoxin HYR1; thi 98.3 7.6E-08 2.6E-12 65.8 0.1 87 4-93 49-152 (171)
88 3fkf_A Thiol-disulfide oxidore 98.3 1.9E-06 6.3E-11 56.3 6.7 77 3-92 50-132 (148)
89 1lu4_A Soluble secreted antige 98.3 1.7E-06 5.8E-11 55.8 6.4 73 4-92 42-116 (136)
90 3ha9_A Uncharacterized thiored 98.3 1.8E-06 6E-11 58.1 6.4 71 4-89 55-145 (165)
91 2ls5_A Uncharacterized protein 97.6 9.4E-08 3.2E-12 64.2 0.0 80 3-93 50-133 (159)
92 3ia1_A THIO-disulfide isomeras 98.2 1.9E-06 6.4E-11 57.2 5.2 74 4-93 48-128 (154)
93 3dwv_A Glutathione peroxidase- 98.2 6.2E-07 2.1E-11 62.5 2.6 88 2-93 62-167 (187)
94 4hde_A SCO1/SENC family lipopr 98.2 2.4E-05 8.2E-10 53.9 10.1 89 4-93 51-152 (170)
95 2lja_A Putative thiol-disulfid 98.1 4.7E-06 1.6E-10 54.9 5.9 77 3-91 47-125 (152)
96 4evm_A Thioredoxin family prot 98.1 5E-06 1.7E-10 53.0 5.7 77 4-93 40-123 (138)
97 2h30_A Thioredoxin, peptide me 98.1 3.3E-06 1.1E-10 56.4 5.0 79 3-93 55-140 (164)
98 1zzo_A RV1677; thioredoxin fol 98.0 2.5E-05 8.4E-10 49.9 7.5 71 4-88 43-115 (136)
99 2b1k_A Thiol:disulfide interch 98.0 2.8E-05 9.5E-10 52.3 8.0 71 10-93 71-144 (168)
100 3kij_A Probable glutathione pe 98.0 2.4E-06 8.3E-11 58.9 2.6 87 3-93 55-154 (180)
101 1i5g_A Tryparedoxin II; electr 97.8 6.6E-06 2.2E-10 54.1 2.0 78 3-92 45-127 (144)
102 1o8x_A Tryparedoxin, TRYX, TXN 97.7 1E-05 3.6E-10 53.3 2.0 78 3-92 45-127 (146)
103 2lus_A Thioredoxion; CR-Trp16, 96.9 5.2E-06 1.8E-10 54.1 0.0 80 3-93 43-127 (143)
104 3s9f_A Tryparedoxin; thioredox 97.6 1.6E-05 5.4E-10 54.3 1.4 78 3-92 65-147 (165)
105 1o73_A Tryparedoxin; electron 97.6 2.9E-05 9.8E-10 50.7 2.0 78 3-92 45-127 (144)
106 1kng_A Thiol:disulfide interch 97.6 0.00054 1.8E-08 44.9 8.3 70 11-93 63-136 (156)
107 2l57_A Uncharacterized protein 79.8 1.9 6.5E-05 26.7 3.5 32 51-92 68-100 (126)
108 3fvv_A Uncharacterized protein 78.0 5.4 0.00019 26.8 5.7 39 5-44 94-132 (232)
109 4gxt_A A conserved functionall 78.0 2.5 8.4E-05 32.7 4.2 38 5-43 223-260 (385)
110 3s6j_A Hydrolase, haloacid deh 76.5 9.9 0.00034 25.1 6.6 59 5-64 93-163 (233)
111 2wm8_A MDP-1, magnesium-depend 75.7 6.6 0.00022 26.1 5.5 43 5-48 70-113 (187)
112 3sd7_A Putative phosphatase; s 75.7 13 0.00043 25.0 7.0 59 5-64 112-182 (240)
113 1nnl_A L-3-phosphoserine phosp 74.0 4.9 0.00017 27.0 4.6 39 5-44 88-126 (225)
114 3e58_A Putative beta-phosphogl 72.1 9.7 0.00033 24.6 5.5 60 5-65 91-162 (214)
115 3ib6_A Uncharacterized protein 69.9 10 0.00036 25.1 5.4 47 5-52 36-87 (189)
116 2pib_A Phosphorylated carbohyd 68.5 11 0.00039 24.3 5.3 60 5-65 86-157 (216)
117 2p9j_A Hypothetical protein AQ 67.0 10 0.00035 24.3 4.8 38 6-44 39-76 (162)
118 2nyv_A Pgpase, PGP, phosphogly 66.6 12 0.00042 25.1 5.3 39 5-44 85-123 (222)
119 2obb_A Hypothetical protein; s 66.4 12 0.0004 25.0 5.0 46 4-52 25-73 (142)
120 2no4_A (S)-2-haloacid dehaloge 65.8 15 0.0005 24.8 5.5 40 5-45 107-146 (240)
121 3m9l_A Hydrolase, haloacid deh 65.7 14 0.00046 24.3 5.3 39 5-44 72-110 (205)
122 3m1y_A Phosphoserine phosphata 65.0 6.5 0.00022 25.9 3.5 40 5-45 77-116 (217)
123 3fk8_A Disulphide isomerase; A 64.8 19 0.00066 22.1 5.6 35 52-93 75-110 (133)
124 4as2_A Phosphorylcholine phosp 63.4 5.8 0.0002 29.9 3.3 36 5-41 145-180 (327)
125 3noy_A 4-hydroxy-3-methylbut-2 62.9 12 0.0004 29.3 5.0 54 4-59 44-99 (366)
126 1zrn_A L-2-haloacid dehalogena 62.8 18 0.00062 24.0 5.5 39 5-44 97-135 (232)
127 3um9_A Haloacid dehalogenase, 60.8 19 0.00064 23.7 5.3 60 5-65 98-169 (230)
128 3kzx_A HAD-superfamily hydrola 60.3 14 0.00047 24.6 4.6 60 5-65 105-176 (231)
129 2gmw_A D,D-heptose 1,7-bisphos 60.2 21 0.00072 24.1 5.6 39 5-44 52-105 (211)
130 4eze_A Haloacid dehalogenase-l 60.0 11 0.00037 27.9 4.3 40 5-45 181-220 (317)
131 3a1c_A Probable copper-exporti 59.6 16 0.00054 26.1 5.0 59 5-64 165-224 (287)
132 2hsz_A Novel predicted phospha 59.1 20 0.00067 24.5 5.3 40 5-45 116-155 (243)
133 4g9p_A 4-hydroxy-3-methylbut-2 57.7 14 0.0005 29.1 4.7 52 4-58 36-95 (406)
134 3pct_A Class C acid phosphatas 56.5 21 0.00071 26.2 5.2 40 5-45 103-146 (260)
135 3kd3_A Phosphoserine phosphohy 56.3 16 0.00055 23.6 4.3 39 5-44 84-122 (219)
136 2pr7_A Haloacid dehalogenase/e 55.7 6.5 0.00022 24.0 2.1 39 5-44 20-58 (137)
137 2voc_A Thioredoxin; electron t 55.4 30 0.001 20.5 6.0 32 51-92 57-88 (112)
138 1l6r_A Hypothetical protein TA 54.5 26 0.00089 24.2 5.3 38 6-44 25-62 (227)
139 3umb_A Dehalogenase-like hydro 53.5 24 0.00082 23.3 4.8 47 5-52 101-149 (233)
140 4ex6_A ALNB; modified rossman 53.3 18 0.0006 24.1 4.1 60 5-65 106-177 (237)
141 1k1e_A Deoxy-D-mannose-octulos 52.4 26 0.00087 23.1 4.8 37 7-44 39-75 (180)
142 4fe3_A Cytosolic 5'-nucleotida 52.0 16 0.00053 26.2 3.9 39 5-44 143-181 (297)
143 2fpr_A Histidine biosynthesis 50.6 23 0.00078 23.4 4.3 39 5-44 44-97 (176)
144 3n28_A Phosphoserine phosphata 49.7 21 0.0007 26.0 4.3 39 5-44 180-218 (335)
145 2j23_A Thioredoxin; immune pro 49.0 35 0.0012 20.7 4.8 35 48-92 71-105 (121)
146 3ocu_A Lipoprotein E; hydrolas 48.4 26 0.00087 25.8 4.6 40 5-45 103-146 (262)
147 3p96_A Phosphoserine phosphata 48.3 24 0.00081 26.6 4.6 39 5-44 258-296 (415)
148 1te2_A Putative phosphatase; s 47.5 48 0.0016 21.3 5.5 60 5-65 96-167 (226)
149 1rku_A Homoserine kinase; phos 47.2 56 0.0019 21.2 5.9 41 5-47 71-111 (206)
150 2o2x_A Hypothetical protein; s 47.0 18 0.0006 24.5 3.4 39 5-44 58-111 (218)
151 3skx_A Copper-exporting P-type 46.8 36 0.0012 23.2 5.0 39 5-44 146-184 (280)
152 3mc1_A Predicted phosphatase, 46.3 24 0.00081 23.2 3.8 59 5-64 88-158 (226)
153 3kbb_A Phosphorylated carbohyd 46.3 48 0.0017 21.6 5.5 48 4-52 85-134 (216)
154 2om6_A Probable phosphoserine 46.2 52 0.0018 21.4 5.6 60 5-65 101-175 (235)
155 2hoq_A Putative HAD-hydrolase 46.2 36 0.0012 22.8 4.8 47 5-52 96-144 (241)
156 4eek_A Beta-phosphoglucomutase 45.8 25 0.00084 23.9 4.0 39 5-44 112-150 (259)
157 3mmz_A Putative HAD family hyd 45.5 28 0.00097 22.9 4.2 32 12-44 48-79 (176)
158 2r8e_A 3-deoxy-D-manno-octulos 45.5 23 0.00079 23.5 3.7 33 11-44 61-93 (188)
159 3ghf_A Septum site-determining 44.8 33 0.0011 22.1 4.2 37 7-44 62-98 (120)
160 2yj3_A Copper-transporting ATP 49.8 4.8 0.00017 28.7 0.0 58 5-63 138-196 (263)
161 2hcf_A Hydrolase, haloacid deh 43.1 38 0.0013 22.2 4.5 40 5-45 95-135 (234)
162 2go7_A Hydrolase, haloacid deh 41.5 51 0.0017 20.7 4.8 59 5-65 87-157 (207)
163 2fea_A 2-hydroxy-3-keto-5-meth 40.5 17 0.0006 24.7 2.5 34 5-39 79-112 (236)
164 3ddh_A Putative haloacid dehal 40.4 46 0.0016 21.5 4.6 60 5-65 107-174 (234)
165 3d6j_A Putative haloacid dehal 40.3 43 0.0015 21.5 4.4 40 5-45 91-130 (225)
166 4hi4_A Aerotaxis transducer AE 40.1 19 0.00064 21.5 2.4 14 78-91 17-31 (121)
167 2zg6_A Putative uncharacterize 40.0 27 0.00093 23.2 3.4 38 5-44 97-134 (220)
168 3n1u_A Hydrolase, HAD superfam 39.2 37 0.0013 22.7 4.0 32 12-44 55-86 (191)
169 3cnh_A Hydrolase family protei 39.0 48 0.0016 21.3 4.4 38 5-44 88-125 (200)
170 1xx1_A Smase I, sphingomyelina 38.5 50 0.0017 23.5 4.8 40 16-59 219-259 (285)
171 2kuc_A Putative disulphide-iso 37.7 40 0.0014 20.3 3.7 30 53-92 74-104 (130)
172 2fi1_A Hydrolase, haloacid deh 37.5 73 0.0025 20.0 5.1 41 5-47 84-124 (190)
173 2hi0_A Putative phosphoglycola 37.1 45 0.0016 22.4 4.2 60 5-65 112-182 (240)
174 3n07_A 3-deoxy-D-manno-octulos 37.0 44 0.0015 22.7 4.1 32 12-44 61-92 (195)
175 3qnm_A Haloacid dehalogenase-l 36.8 61 0.0021 21.1 4.8 46 5-52 109-156 (240)
176 3iru_A Phoshonoacetaldehyde hy 36.0 46 0.0016 22.4 4.1 60 5-65 113-185 (277)
177 3lvj_C Sulfurtransferase TUSA; 35.8 68 0.0023 18.9 4.7 37 8-44 24-63 (82)
178 3e8m_A Acylneuraminate cytidyl 35.4 38 0.0013 21.5 3.4 32 12-44 40-71 (164)
179 2zos_A MPGP, mannosyl-3-phosph 35.1 52 0.0018 22.7 4.3 40 4-44 18-57 (249)
180 2i33_A Acid phosphatase; HAD s 34.9 49 0.0017 23.6 4.3 39 5-44 103-144 (258)
181 2p2v_A Alpha-2,3-sialyltransfe 34.5 19 0.00063 27.0 1.9 28 3-31 204-233 (288)
182 1l7m_A Phosphoserine phosphata 34.4 46 0.0016 21.3 3.7 38 6-44 79-116 (211)
183 2zyz_A Putative uncharacterize 33.8 32 0.0011 22.3 2.8 21 76-96 84-106 (116)
184 3mn1_A Probable YRBI family ph 33.2 47 0.0016 22.0 3.7 33 11-44 54-86 (189)
185 3a0s_A Sensor protein; PAS-fol 33.0 30 0.001 18.1 2.3 14 78-91 4-18 (96)
186 4ap9_A Phosphoserine phosphata 33.0 11 0.00038 24.2 0.5 38 5-44 81-118 (201)
187 3l8h_A Putative haloacid dehal 32.7 85 0.0029 19.9 4.9 26 5-31 29-54 (179)
188 1qyi_A ZR25, hypothetical prot 32.7 70 0.0024 24.5 5.0 40 5-45 217-256 (384)
189 2i6x_A Hydrolase, haloacid deh 31.1 53 0.0018 21.2 3.7 34 5-40 91-124 (211)
190 3lyh_A Cobalamin (vitamin B12) 30.8 58 0.002 20.3 3.7 39 3-41 45-93 (126)
191 3pnx_A Putative sulfurtransfer 30.0 22 0.00075 24.2 1.5 25 3-28 99-123 (160)
192 2i7d_A 5'(3')-deoxyribonucleot 29.5 8.9 0.00031 25.5 -0.5 38 5-43 75-113 (193)
193 2w43_A Hypothetical 2-haloalka 29.2 69 0.0023 20.6 4.0 38 5-45 76-113 (201)
194 3l12_A Putative glycerophospho 29.2 56 0.0019 23.9 3.8 43 10-57 259-301 (313)
195 2pz0_A Glycerophosphoryl diest 28.8 39 0.0013 23.8 2.8 44 11-59 203-246 (252)
196 2eq5_A 228AA long hypothetical 28.7 37 0.0013 23.4 2.6 36 6-42 62-97 (228)
197 2hdo_A Phosphoglycolate phosph 28.4 51 0.0017 21.3 3.2 41 5-47 85-125 (209)
198 3ks6_A Glycerophosphoryl diest 28.1 49 0.0017 23.4 3.2 40 11-55 196-235 (250)
199 3dv9_A Beta-phosphoglucomutase 28.1 57 0.002 21.5 3.4 38 5-44 110-147 (247)
200 3mfx_A Sensory BOX/ggdef famil 28.0 36 0.0012 21.2 2.3 15 78-92 19-34 (129)
201 2pu9_C TRX-F, thioredoxin F-ty 27.8 93 0.0032 18.0 5.9 29 53-92 66-95 (111)
202 3l86_A Acetylglutamate kinase; 27.7 1.3E+02 0.0046 21.9 5.6 42 4-47 51-92 (279)
203 3b33_A Sensor protein; structu 27.7 37 0.0013 19.3 2.1 14 78-91 19-33 (115)
204 1yns_A E-1 enzyme; hydrolase f 27.4 1.1E+02 0.0038 21.2 5.0 36 5-41 132-167 (261)
205 2p11_A Hypothetical protein; p 27.4 49 0.0017 22.1 3.0 37 5-43 98-134 (231)
206 3f40_A Uncharacterized NTF2-li 27.4 66 0.0022 19.7 3.4 19 80-98 92-110 (114)
207 3nuq_A Protein SSM1, putative 27.1 93 0.0032 21.3 4.5 61 5-65 144-221 (282)
208 3nas_A Beta-PGM, beta-phosphog 27.0 78 0.0027 20.7 4.0 58 5-65 94-163 (233)
209 1zcc_A Glycerophosphodiester p 26.7 70 0.0024 22.5 3.8 44 11-58 186-229 (248)
210 3nvb_A Uncharacterized protein 26.4 1.2E+02 0.004 23.5 5.3 35 5-40 258-292 (387)
211 1wr8_A Phosphoglycolate phosph 26.0 1.1E+02 0.0037 20.6 4.7 38 6-44 23-60 (231)
212 1xfl_A Thioredoxin H1; AT3G510 25.9 1.1E+02 0.0039 18.4 5.9 73 7-92 26-108 (124)
213 2ah5_A COG0546: predicted phos 25.7 73 0.0025 20.9 3.6 59 5-65 86-154 (210)
214 1qq5_A Protein (L-2-haloacid d 25.7 1.2E+02 0.0043 20.2 4.9 37 5-44 95-131 (253)
215 2buf_A Acetylglutamate kinase; 25.5 1.7E+02 0.0058 21.2 5.9 38 5-44 44-81 (300)
216 1ll8_A PAS kinase; PAS domain, 25.3 47 0.0016 19.0 2.4 14 78-91 10-25 (114)
217 3j08_A COPA, copper-exporting 25.3 1E+02 0.0035 25.1 5.0 38 6-44 460-497 (645)
218 3k1z_A Haloacid dehalogenase-l 25.2 1E+02 0.0034 21.0 4.4 38 5-44 108-145 (263)
219 3ij5_A 3-deoxy-D-manno-octulos 24.8 78 0.0027 21.7 3.7 33 11-44 84-116 (211)
220 2dj1_A Protein disulfide-isome 24.7 1.2E+02 0.0041 18.3 5.7 13 52-64 78-90 (140)
221 3mz2_A Glycerophosphoryl diest 24.3 90 0.0031 22.8 4.1 22 9-31 218-239 (292)
222 3s81_A Putative aspartate race 24.2 19 0.00064 26.3 0.4 41 6-51 86-127 (268)
223 2qkp_A Uncharacterized protein 23.9 47 0.0016 21.5 2.3 16 78-93 31-47 (151)
224 2pke_A Haloacid delahogenase-l 23.7 1.3E+02 0.0045 20.0 4.7 59 5-65 114-179 (251)
225 3fc7_A HTR-like protein, senso 23.6 52 0.0018 18.6 2.3 14 78-91 31-45 (125)
226 2gj3_A Nitrogen fixation regul 23.0 50 0.0017 19.1 2.1 14 78-91 17-31 (120)
227 3no3_A Glycerophosphodiester p 23.0 75 0.0025 22.2 3.4 41 11-56 188-228 (238)
228 1m3s_A Hypothetical protein YC 22.7 1.1E+02 0.0038 19.9 4.1 24 5-29 92-115 (186)
229 3rlg_A Sphingomyelin phosphodi 22.4 53 0.0018 24.9 2.6 33 22-58 243-275 (302)
230 3iz5_f 60S ribosomal protein L 22.3 1.5E+02 0.0052 18.6 5.0 56 6-64 29-88 (112)
231 3j09_A COPA, copper-exporting 22.3 1.2E+02 0.0042 25.0 5.0 38 6-44 538-575 (723)
232 3fg8_A Uncharacterized protein 22.2 52 0.0018 19.2 2.1 14 78-91 24-38 (118)
233 3qxg_A Inorganic pyrophosphata 22.1 69 0.0023 21.3 2.9 38 5-44 111-148 (243)
234 2vlg_A Sporulation kinase A; h 21.8 52 0.0018 19.9 2.1 14 78-91 11-25 (111)
235 3lup_A DEGV family protein; PS 21.7 57 0.002 23.9 2.6 25 7-31 71-95 (285)
236 3u26_A PF00702 domain protein; 21.7 1.7E+02 0.0058 18.8 4.9 38 5-44 102-139 (234)
237 1nrw_A Hypothetical protein, h 21.6 2.1E+02 0.0071 19.8 6.1 38 6-44 24-61 (288)
238 3olo_A Two-component sensor hi 21.2 57 0.0019 18.2 2.1 14 78-91 25-39 (118)
239 3jyf_A 2',3'-cyclic nucleotide 21.2 81 0.0028 23.6 3.4 23 7-29 189-211 (339)
240 2b0c_A Putative phosphatase; a 21.2 1.1E+02 0.0037 19.5 3.7 33 5-38 93-125 (206)
241 1w41_A 50S ribosomal protein L 21.2 1.5E+02 0.005 17.9 4.7 56 6-64 19-78 (101)
242 3glv_A Lipopolysaccharide core 21.0 1.5E+02 0.005 19.0 4.3 38 4-44 49-87 (143)
243 2gfh_A Haloacid dehalogenase-l 20.9 1.8E+02 0.0062 19.9 5.1 46 5-52 123-170 (260)
244 3d6i_A Monothiol glutaredoxin- 20.6 1.3E+02 0.0046 17.2 6.1 34 49-92 60-93 (112)
245 2h1v_A Ferrochelatase; rossman 20.5 80 0.0027 23.3 3.2 25 5-29 90-114 (310)
246 3mtw_A L-arginine carboxypepti 20.4 82 0.0028 21.5 3.1 19 75-93 20-38 (403)
247 2k9k_A TONB2; metal transport; 20.3 1.2E+02 0.0041 18.3 3.6 18 77-94 43-61 (106)
248 1x92_A APC5045, phosphoheptose 20.2 1.3E+02 0.0045 19.8 4.1 37 22-60 116-157 (199)
249 3gve_A YFKN protein; alpha-bet 20.2 87 0.003 23.4 3.4 22 7-28 195-216 (341)
250 2xbl_A Phosphoheptose isomeras 20.0 1.3E+02 0.0046 19.6 4.1 40 22-63 119-163 (198)
No 1
>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A
Probab=100.00 E-value=1.8e-36 Score=221.71 Aligned_cols=107 Identities=30% Similarity=0.575 Sum_probs=97.4
Q ss_pred CCcchhHHHcHHHH-HhCCCCEEEEEecCCHHHHHHHHHhcCCCC--ceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 2 KTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEG--KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 2 ~~hlp~f~~~~~~f-~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~--~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
++|||+|++++++| +++|+|+|+|||+||||||+||++.++.++ +|+||+|++++|+++||+..+.. .|+.|++||
T Consensus 87 ~~hlPgf~~~~d~~~k~kGvd~I~ciSVND~FVm~AW~k~~~~~~~~~i~~laD~~~eftkalGl~~~~~-~gg~RS~Ry 165 (199)
T 4h86_A 87 VSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKSIGFELAVG-DGVYWSGRW 165 (199)
T ss_dssp HTTHHHHHHHHHHHHHHSCCCEEEEEESSCHHHHHHHHHHTTCCCCSSEEEEECGGGHHHHHTTCEEEEE-TTEEEECSE
T ss_pred hhhChHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHHHHHhcccccccccccCCcchHHHHhcCceeecC-CCcceeeEE
Confidence 36999999999986 899999999999999999999999998764 59999999999999999988754 346799999
Q ss_pred EEEEeCCeEEEEEEecCCC-ceeeeccccccC
Q psy5401 79 SMVVDDGKITQLNIEPDGT-GLTCSLVDELKL 109 (109)
Q Consensus 79 ~fiVddG~V~~~~v~~~~~-~~~~s~a~~vl~ 109 (109)
+||||||+|+|+++|++|+ ++++|+||+||+
T Consensus 166 a~IVdDGvV~~~~vE~~pg~~~~vS~ae~vL~ 197 (199)
T 4h86_A 166 AMVVENGIVTYAAKETNPGTDVTVSSVESVLA 197 (199)
T ss_dssp EEEEETTEEEEEEECSSTTTCCSTTSHHHHHT
T ss_pred EEEEECCEEEEEEEeCCCCCCCcccCHHHHHh
Confidence 9999999999999998774 699999999996
No 2
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=99.97 E-value=2.9e-31 Score=189.73 Aligned_cols=108 Identities=45% Similarity=0.729 Sum_probs=97.0
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~f 80 (109)
++|+|+|++++++|+++|+++|+|||+|++|+|++|++++++..+|+||||++++|+++||+..+....| +.+++|++|
T Consensus 59 t~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tf 138 (171)
T 2xhf_A 59 NNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAM 138 (171)
T ss_dssp TSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEE
Confidence 6899999999999999999669999999999999999999984459999999999999999987643222 457999999
Q ss_pred EEeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 81 VVDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 81 iVddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
|||||+|+|++++++++++++|+|+.||+
T Consensus 139 vIddG~V~~~~v~~~~~~~~~s~a~~vL~ 167 (171)
T 2xhf_A 139 LIDDNKIRSVSTEPDITGLACLLSIQRQK 167 (171)
T ss_dssp EEETTEEEEEEETTSCSHHHHHHHHHHC-
T ss_pred EEeCCEEEEEEEeCCCCcccCCCHHHHHH
Confidence 99999999999999999999999999985
No 3
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=99.96 E-value=4.1e-29 Score=179.57 Aligned_cols=106 Identities=41% Similarity=0.758 Sum_probs=96.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~fi 81 (109)
+|+|.|.+.+++|+++|+|+|+|||+|+||+|++|++++++.++|++|||++++++++||+..+....| |.|+.|++||
T Consensus 66 ~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfI 145 (176)
T 4f82_A 66 QHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMV 145 (176)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEE
Confidence 389999999999999999889999999999999999999986469999999999999999988754345 6789999999
Q ss_pred EeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 82 VDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 82 VddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
|+||+|+|+++++ ++++++|+|++||+
T Consensus 146 I~dG~I~~~~~~~-~~~~~~~~a~~vL~ 172 (176)
T 4f82_A 146 IDGGVVKTLAVEA-PGKFEVSDAASVLA 172 (176)
T ss_dssp EETTEEEEEEECC-TTCCSSSSHHHHHH
T ss_pred EcCCEEEEEEEcC-CCCcchhhHHHHHH
Confidence 9999999999997 67899999999984
No 4
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=99.95 E-value=2.2e-28 Score=175.93 Aligned_cols=106 Identities=25% Similarity=0.500 Sum_probs=94.3
Q ss_pred CcchhHHHcHHHH-HhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEE
Q psy5401 3 THLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f-~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~f 80 (109)
+|+|+|.+++++| +++|++.|+|||+|++|+|++|++++++. +|+||||++++|+++||+..+....| |.|++|++|
T Consensus 62 ~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~-~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tf 140 (182)
T 1xiy_A 62 KMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVA 140 (182)
T ss_dssp THHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCC-SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCC-CceEEEeCchHHHHHhCCceeccccCCCCceEEEEE
Confidence 7999999999999 99999669999999999999999999984 49999999999999999987654345 568999999
Q ss_pred EEeCCeEEEEEEecCCCc------eeeeccccccC
Q psy5401 81 VVDDGKITQLNIEPDGTG------LTCSLVDELKL 109 (109)
Q Consensus 81 iVddG~V~~~~v~~~~~~------~~~s~a~~vl~ 109 (109)
|||||+|+|+++++++.+ ++.+.+++||+
T Consensus 141 vIddG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~ 175 (182)
T 1xiy_A 141 IVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKE 175 (182)
T ss_dssp EEETTEEEEEEECSSCCTTCSSCCCSTTSHHHHHH
T ss_pred EEcCCEEEEEEEeCCcccccccCcccCCCHHHHHH
Confidence 999999999999876543 77889998873
No 5
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=99.92 E-value=3.9e-25 Score=156.99 Aligned_cols=106 Identities=49% Similarity=0.858 Sum_probs=95.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEE-EecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccc---cCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFC-IAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP---VLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~-iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~---~~Gg~r~~R~ 78 (109)
+|+|.|.+.+++|+++|++ |++ ||+|+++.+++|++++++..+|++|+|++++++++||+..+.. ..|+.++.|+
T Consensus 62 ~e~p~l~~~~~~~~~~gv~-vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~ 140 (173)
T 3mng_A 62 THLPGFVEQAEALKAKGVQ-VVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRF 140 (173)
T ss_dssp THHHHHHHTHHHHHTTTCC-EEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCE
T ss_pred HHHHHHHHHHHHHHhCCCE-EEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEE
Confidence 5899999999999999995 885 9999999999999999986459999999999999999986531 1244578999
Q ss_pred EEEEeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 79 SMVVDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 79 ~fiVddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
+||||||+|+|+++++.+.++++|+++.||+
T Consensus 141 tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~ 171 (173)
T 3mng_A 141 SMVVQDGIVKALNVEPDGTGLTCSLAPNIIS 171 (173)
T ss_dssp EEEEETTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred EEEEECCEEEEEEEeCCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999985
No 6
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=99.92 E-value=4.8e-25 Score=157.88 Aligned_cols=106 Identities=43% Similarity=0.678 Sum_probs=96.2
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~fiV 82 (109)
|+|.|.+.+++|+++|++.|++||+|+++++++|++++++.++|++|+|++++++++||+..+....| |.|+.|++|||
T Consensus 76 e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiI 155 (184)
T 3uma_A 76 HLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLV 155 (184)
T ss_dssp HHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEE
Confidence 79999999999999999449999999999999999999986459999999999999999987643334 56899999999
Q ss_pred eCCeEEEEEEecCCCceeeeccccccC
Q psy5401 83 DDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 83 ddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
|||+|+|+++.++++++++|++|+||+
T Consensus 156 ddG~I~~~~~~~~~g~~~~~~~~~vL~ 182 (184)
T 3uma_A 156 EDGVVKALNIEESPGQATASGAAAMLE 182 (184)
T ss_dssp ETTEEEEEEECSSTTCCSTTSHHHHHH
T ss_pred CCCEEEEEEEeCCCCCCcCCCHHHHHh
Confidence 999999999999999999999999984
No 7
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=99.88 E-value=1.2e-22 Score=142.88 Aligned_cols=106 Identities=32% Similarity=0.558 Sum_probs=93.6
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~fiV 82 (109)
|+|.|.+.+++|+++|++.|++||+|+++.+++|++++++..+|++|+|++++++++||+..+....| |.|+.|.+|+|
T Consensus 63 h~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I 142 (171)
T 2pwj_A 63 HVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYV 142 (171)
T ss_dssp THHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEE
Confidence 69999999999999999449999999999999999999973249999999999999999986543223 56788899999
Q ss_pred eCCeEEEEEEecCCCceeeeccccccC
Q psy5401 83 DDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 83 ddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
+||+|+|.++.+++.++++++++.||+
T Consensus 143 ~~G~I~~~~~~~~~~~~~~~~~~~il~ 169 (171)
T 2pwj_A 143 VDGKVKALNVEESPSDVKVSGAETILG 169 (171)
T ss_dssp ETTEEEEEEECSSTTCCSSSSHHHHHH
T ss_pred ECCEEEEEEeecCCCCCcccCHHHHHh
Confidence 999999999999999999999999984
No 8
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.2e-22 Score=149.94 Aligned_cols=94 Identities=21% Similarity=0.359 Sum_probs=81.3
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC----CC-CceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN----AE-GKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~----~~-~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
++|+|.|.+.+++|+++|+ +|++||+|++|+|++|++... +. -+|++|||++++++++||+..+. .| .+.
T Consensus 69 t~E~~~f~~~~~~f~~~g~-~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~--~g--~~~ 143 (216)
T 3sbc_A 69 PTEIIAFSEAAKKFEEQGA-QVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEE--EG--VAL 143 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETT--TT--EEC
T ss_pred chhhhHHHHhHHhhccCCc-eEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeecc--CC--cee
Confidence 3689999999999999999 799999999999999997652 21 13899999999999999998764 34 688
Q ss_pred EEEEEEe-CCeEEEEEEecCCCcee
Q psy5401 77 RYSMVVD-DGKITQLNIEPDGTGLT 100 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~~~~~~~ 100 (109)
|++|||| ||+|+|+++.+.+.+.+
T Consensus 144 R~tFiID~~G~Ir~~~v~~~~~grn 168 (216)
T 3sbc_A 144 RGLFIIDPKGVIRHITINDLPVGRN 168 (216)
T ss_dssp EEEEEECTTSBEEEEEEECTTBCCC
T ss_pred eEEEEECCCCeEEEEEEcCCCCCCC
Confidence 9999999 99999999998776653
No 9
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=99.87 E-value=4e-22 Score=138.16 Aligned_cols=105 Identities=40% Similarity=0.765 Sum_probs=92.8
Q ss_pred CcchhHHHcHHHHHhCCCCE-EEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHE-IFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~-V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~f 80 (109)
.|+|.|.+.+++|+++|+ + |++||+|+++.+++|++++++.+++++|+|++++++++||+..+....| +.++.|++|
T Consensus 54 ~e~~~l~~~~~~~~~~~v-~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~ 132 (162)
T 1tp9_A 54 KHVPGFIEKAGELKSKGV-TEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFAL 132 (162)
T ss_dssp THHHHHHHHHHHHHHTTC-CCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEE
T ss_pred HHHHHHHHHHHHHHHCCC-CEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEE
Confidence 689999999999999999 6 9999999999999999999983239999999999999999976532233 456889999
Q ss_pred EEeCCeEEEEEEecCCCceeeeccccccC
Q psy5401 81 VVDDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 81 iVddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
|||||+|++.++.+ +.++.+|++++||+
T Consensus 133 vid~G~i~~~~~~~-~~~~~~~~~~~vl~ 160 (162)
T 1tp9_A 133 LVDDLKVKAANIEG-GGEFTVSSAEDILK 160 (162)
T ss_dssp EEETTEEEEEEECS-SSCCSSCSHHHHHT
T ss_pred EEECCEEEEEEeeC-CCCCccCCHHHHHh
Confidence 99999999999987 88899999999985
No 10
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=99.87 E-value=4.6e-22 Score=139.71 Aligned_cols=106 Identities=49% Similarity=0.927 Sum_probs=93.8
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCcccc-ccCCceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI-PVLGGWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~-~~~Gg~r~~R~~fiV 82 (109)
|+|.|.+.+++|+++|+++|++||+|+++.+++|++++++..+|++|+|++++++++||+.... ...|+.++.|++|||
T Consensus 51 e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI 130 (167)
T 2wfc_A 51 HLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI 130 (167)
T ss_dssp HHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE
Confidence 8999999999999999966999999999999999999998534999999999999999997542 111334688999999
Q ss_pred eCCeEEEEEEecCCCceeeeccccccC
Q psy5401 83 DDGKITQLNIEPDGTGLTCSLVDELKL 109 (109)
Q Consensus 83 ddG~V~~~~v~~~~~~~~~s~a~~vl~ 109 (109)
+||+|++.++.+++.+.++|+||++|+
T Consensus 131 ~~G~I~~~~~~~~~~~~~~~~~~~~~~ 157 (167)
T 2wfc_A 131 EDGVVTKVNVEPDGKGLTCSLAPNILS 157 (167)
T ss_dssp ETTEEEEEEECTTSSSSSTTSHHHHHH
T ss_pred eCCEEEEEEecCCCCcceeccHHHHHH
Confidence 999999999999999999999999984
No 11
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=99.86 E-value=5.9e-22 Score=146.53 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=80.9
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC-----CCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA-----EGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~-----~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
++|++.|.+++++|+++|+ +|++||+|++++|++|+++... .-+|+||||++++++++||+..+. .| .+.
T Consensus 73 t~E~~~f~~~~~eF~~~g~-~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~--~g--~~~ 147 (219)
T 3tue_A 73 PTEVIAFSDSVSRFNELNC-EVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEES--QG--VAY 147 (219)
T ss_dssp CHHHHHHHTTHHHHHTTTE-EEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETT--TT--EEC
T ss_pred chhHhhHHHHHhhhccCCc-EEEEeeCCchhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccC--CC--eeE
Confidence 5789999999999999999 7999999999999999976521 113899999999999999998653 24 788
Q ss_pred EEEEEEe-CCeEEEEEEecCCCcee
Q psy5401 77 RYSMVVD-DGKITQLNIEPDGTGLT 100 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~~~~~~~ 100 (109)
|.+|||| +|+|+++++.+.+.+..
T Consensus 148 R~tFiIDp~g~Ir~~~~~~~~~gr~ 172 (219)
T 3tue_A 148 RGLFIIDPHGMLRQITVNDMPVGRS 172 (219)
T ss_dssp EEEEEECTTSBEEEEEEECTTCCCC
T ss_pred EEEEEECCCCeEEEEEEecCCCCCC
Confidence 9999999 99999999987665553
No 12
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=99.81 E-value=1.7e-20 Score=131.06 Aligned_cols=101 Identities=23% Similarity=0.288 Sum_probs=85.4
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~f 80 (109)
..|+|.|.+.+++|+++|+ +|++||+|+++.+++|++.+++. +++|+|++++++++||+..+.. .| ...+.|++|
T Consensus 50 ~~e~~~l~~~~~~~~~~~v-~vv~is~d~~~~~~~~~~~~~~~--fp~l~D~~~~v~~~ygv~~~~~-~~~~~~~~p~tf 125 (164)
T 4gqc_A 50 TKELCTFRDKMAQLEKANA-EVLAISVDSPWCLKKFKDENRLA--FNLLSDYNREVIKLYNVYHEDL-KGLKMVAKRAVF 125 (164)
T ss_dssp CSSCEESCCCGGGGGGSSS-EEEEEESSCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCEEEEE-TTEEEEECCEEE
T ss_pred ccchhhhhhhHHHhhccCc-eEEEecCCCHHHHHHHHHhcCcc--cceeecCchHHHHHcCCccccc-ccCcCCeeeEEE
Confidence 4689999999999999999 79999999999999999999985 9999999999999999976532 12 346789999
Q ss_pred EEe-CCeEEEEEEecCCCceeeecccccc
Q psy5401 81 VVD-DGKITQLNIEPDGTGLTCSLVDELK 108 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~~~~~~~s~a~~vl 108 (109)
||| ||+|+|.++.+++.+ .++.+++|
T Consensus 126 lID~~G~I~~~~~~~~~~~--~~~~~eil 152 (164)
T 4gqc_A 126 IVKPDGTVAYKWVTDNPLN--EPDYDEVV 152 (164)
T ss_dssp EECTTSBEEEEEECSCTTC--CCCHHHHH
T ss_pred EECCCCEEEEEEEeCCCCC--CCCHHHHH
Confidence 999 999999999876533 24455554
No 13
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=99.78 E-value=1.2e-18 Score=127.24 Aligned_cols=105 Identities=39% Similarity=0.649 Sum_probs=89.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC-ceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG-GWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G-g~r~~R~~fi 81 (109)
.|+|.|.+.+++|+++|+++|++||+|+++.+++|.+++++.+ +++|+|++++++++||+..+....| +.++.|++||
T Consensus 52 ~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~-~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~l 130 (241)
T 1nm3_A 52 SHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSEN-ISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSML 130 (241)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTT-SEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCc-eEEEECCCcHHHHHhCceeecccccCcccceeEEEE
Confidence 6899999999999999995699999999999999999999853 9999999999999999976543234 3468899999
Q ss_pred EeCCeEEEEEEecCCCc--eeeecccccc
Q psy5401 82 VDDGKITQLNIEPDGTG--LTCSLVDELK 108 (109)
Q Consensus 82 VddG~V~~~~v~~~~~~--~~~s~a~~vl 108 (109)
|.||+|++.++.+.+.+ +++++++++|
T Consensus 131 i~~G~i~~~~~~~~~~~~~~~~~~~~~il 159 (241)
T 1nm3_A 131 VKNGVVEKMFIEPNEPGDPFKVSDADTML 159 (241)
T ss_dssp EETTEEEEEEECCSCSSCCCSSSSHHHHH
T ss_pred EECCEEEEEEEeccCCCccceecCHHHHH
Confidence 99999999999875543 4567777665
No 14
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=99.78 E-value=6.6e-19 Score=121.67 Aligned_cols=93 Identities=26% Similarity=0.351 Sum_probs=78.0
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccC-CceeEeEEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVL-GGWRSKRYSM 80 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~-Gg~r~~R~~f 80 (109)
..|+|.|.+.+++|+++|+ +|++||+|++..+++|++++++. +++|+|++++++++||+..+.... |...+.|++|
T Consensus 47 ~~e~~~l~~~~~~~~~~~~-~~v~vs~d~~~~~~~~~~~~~~~--~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tf 123 (157)
T 4g2e_A 47 TKEMCTFRDSMAKFNQVNA-VVLGISVDPPFSNKAFKEHNKLN--FTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVF 123 (157)
T ss_dssp -----CCSCGGGGGGGCSS-EEEEEESSCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEE
T ss_pred ccchhhcccccccccccCc-eEeeecccchhHHHHHHHHcCCc--EEEEEcCCcHHHHHcCCccccccCCCcceeeeeEE
Confidence 4689999999999999999 79999999999999999999985 999999999999999997654322 2457889999
Q ss_pred EEe-CCeEEEEEEecCCC
Q psy5401 81 VVD-DGKITQLNIEPDGT 97 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~~~ 97 (109)
||| +|+|+|.++.+++.
T Consensus 124 lID~~G~I~~~~~~~~~~ 141 (157)
T 4g2e_A 124 VIDKEGKVRYKWVSDDPT 141 (157)
T ss_dssp EECTTSBEEEEEEESSTT
T ss_pred EECCCCEEEEEEECCCCC
Confidence 999 99999999987553
No 15
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=99.68 E-value=1.3e-16 Score=118.08 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=71.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC-CchHhHhhCCccccc-cCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIP-VLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~-~~~~~k~~G~~~~~~-~~Gg~r~~R~~f 80 (109)
.++|.|.+. | +|+ +|++||+|+++++++|++++++. .|++|||+ +++++++||+..+.. ..| ++.|++|
T Consensus 71 ~El~~~~~~---~--~gv-~VvgIS~Ds~~~~~~f~~~~gl~-~fplLsD~~~~~vak~yGv~~~~~~~~G--~~~p~tf 141 (224)
T 3keb_A 71 RETRRFLDS---W--PHL-KLIVITVDSPSSLARARHEHGLP-NIALLSTLRGRDFHKRYGVLITEYPLSG--YTSPAII 141 (224)
T ss_dssp HHHHHHHTT---C--TTS-EEEEEESSCHHHHHHHHHHHCCT-TCEEEESTTCTTHHHHTTCBCCSTTSTT--CBCCEEE
T ss_pred HHHHHHHHH---c--CCC-EEEEEECCCHHHHHHHHHHcCCC-CceEEEcCCchHHHHHhCCccccccccC--CccCEEE
Confidence 456777666 4 799 79999999999999999999984 39999999 699999999987542 123 6789999
Q ss_pred EEe-CCeEEEEEEecCC
Q psy5401 81 VVD-DGKITQLNIEPDG 96 (109)
Q Consensus 81 iVd-dG~V~~~~v~~~~ 96 (109)
||| ||+|+|.++.+++
T Consensus 142 vID~dG~I~~~~~~~~~ 158 (224)
T 3keb_A 142 LADAANVVHYSERLANT 158 (224)
T ss_dssp EECTTCBEEEEEECSBT
T ss_pred EEcCCCEEEEEEecCCC
Confidence 999 9999999998654
No 16
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=99.65 E-value=2.6e-16 Score=114.90 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=77.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh-------cCCCCceEEeecCCchHhHhhCCccccc--cCCce
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK-------NNAEGKIRFLADPNLEFTKKLGVEHEIP--VLGGW 73 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~-------~~~~~~i~~lsD~~~~~~k~~G~~~~~~--~~Gg~ 73 (109)
+++|.|.+.+++|+++|+ +|++||+|++++|++|.+. .++ +|++++|++++++++||+..+.. ..|..
T Consensus 49 ~el~~l~~l~~~f~~~~v-~vi~vS~D~~~~~~~~~~~i~~~~~~~~~--~fpil~D~~~~va~~ygv~~~~~~~~~g~~ 125 (220)
T 1xcc_A 49 TELAELGKMHEDFLKLNC-KLIGFSCNSKESHDKWIEDIKYYGKLNKW--EIPIVCDESRELANKLKIMDEQEKDITGLP 125 (220)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHHHHHHHHTCSCC--CCCEEECTTSHHHHHHTCEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHHHHHHHhcCCCC--cceeEECchhHHHHHhCCCCcccccCCCCC
Confidence 578999999999999999 7999999999999999983 444 39999999999999999975421 11213
Q ss_pred eEeEEEEEEe-CCeEEEEEEecCCCce
Q psy5401 74 RSKRYSMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 74 r~~R~~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
.+.|.+|||| +|+|++..+.+...+.
T Consensus 126 ~~~p~~flID~~G~I~~~~~~~~~~g~ 152 (220)
T 1xcc_A 126 LTCRCLFFISPEKKIKATVLYPATTGR 152 (220)
T ss_dssp EECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred cccceEEEECCCCEEEEEEecCCCCCC
Confidence 5789999999 9999999987654443
No 17
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=99.65 E-value=6.1e-16 Score=114.31 Aligned_cols=94 Identities=21% Similarity=0.313 Sum_probs=77.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHH------hc--CCCCceEEeecCCchHhHhhCCccccc--cCCc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR------KN--NAEGKIRFLADPNLEFTKKLGVEHEIP--VLGG 72 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~------~~--~~~~~i~~lsD~~~~~~k~~G~~~~~~--~~Gg 72 (109)
+++|.|.+.+++|+++|+ +|++||+|++++|++|.+ .. ++. |++++|++++++++||+..+.. ..|.
T Consensus 47 ~el~~l~~l~~ef~~~~v-~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~--fpil~D~~~~va~~ygv~~~~~~~~~g~ 123 (233)
T 2v2g_A 47 TELGRVIQLEGDFKKRGV-KLIALSCDNVADHKEWSEDVKCLSGVKGDMP--YPIIADETRELAVKLGMVDPDERTSTGM 123 (233)
T ss_dssp HHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHHHHHHHHTCCSSCS--SCEEECTTCHHHHHTTCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHHcCC-EEEEEcCCCHHHHHHHHHHHHHhhCcccCCc--eEEEECChHHHHHHhCCcCcccccCCCc
Confidence 578999999999999999 799999999999999998 34 443 9999999999999999975421 1122
Q ss_pred eeEeEEEEEEe-CCeEEEEEEecCCCce
Q psy5401 73 WRSKRYSMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 73 ~r~~R~~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
..+.|.+|||| +|+|++..+.+...+.
T Consensus 124 ~~~~p~~fiID~~G~I~~~~~~~~~~gr 151 (233)
T 2v2g_A 124 PLTCRAVFIIGPDKKLKLSILYPATTGR 151 (233)
T ss_dssp EEECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred ccccceEEEECCCCEEEEEEecCCCCCC
Confidence 35779999999 9999999987654443
No 18
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=99.63 E-value=6.3e-16 Score=115.41 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=78.6
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
..++|.|.+.+++|+++|+ +|++||+|+++.+++|.+.. ++ .|++++|++++++++||+..+. .| .
T Consensus 108 ~~el~~l~~l~~~~~~~gv-~vv~IS~D~~~~~~~~~~~~~~~~g~~~~--~fp~l~D~~~~va~~ygv~~~~--~g--~ 180 (254)
T 3tjj_A 108 PTEIIAFGDRLEEFRSINT-EVVACSVDSQFTHLAWINTPRRQGGLGPI--RIPLLSDLTHQISKDYGVYLED--SG--H 180 (254)
T ss_dssp CHHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHTSCGGGTSCCSC--SSCEEECTTSHHHHHHTCEETT--TT--E
T ss_pred HHHHHHHHHHHHHHHHcCC-EEEEEcCCCHHHHHHHHHHHHHhcCCccc--ccceeeCcHHHHHHHcCCcccc--CC--C
Confidence 3579999999999999999 79999999999999999876 34 3899999999999999997653 24 6
Q ss_pred EeEEEEEEe-CCeEEEEEEecCCCce
Q psy5401 75 SKRYSMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
+.|.+|||| +|+|++..+.+.+.+.
T Consensus 181 ~~p~tflID~~G~I~~~~~~~~~~~~ 206 (254)
T 3tjj_A 181 TLRGLFIIDDKGILRQITLNDLPVGR 206 (254)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTCCC
T ss_pred ccceEEEECCCCeEEEEEecCCCCCC
Confidence 779999999 9999999998655443
No 19
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=99.62 E-value=9.5e-16 Score=112.16 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=77.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh----------cCCCCceEEeecCCchHhHhhCCccccc--cC
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK----------NNAEGKIRFLADPNLEFTKKLGVEHEIP--VL 70 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~----------~~~~~~i~~lsD~~~~~~k~~G~~~~~~--~~ 70 (109)
+++|.|.+.+++|+++|+ +|++||+|+++.|++|.+. .++. |++++|++++++++||+..+.. ..
T Consensus 49 ~el~~l~~l~~~f~~~~v-~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~--fpil~D~~~~va~~ygv~~~~~~~~~ 125 (224)
T 1prx_A 49 TELGRAAKLAPEFAKRNV-KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLP--FPIIDDRNRELAILLGMLDPAEKDEK 125 (224)
T ss_dssp HHHHHHHHHHHHHHTTTE-EEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCS--SCEEECTTCHHHHHTTSSCSCTTCSS
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhhCcccccCcC--cceeecCchHHHHHhCCCCcccccCC
Confidence 578999999999999999 7999999999999999986 5553 9999999999999999965421 01
Q ss_pred CceeEeEEEEEEe-CCeEEEEEEecCCCce
Q psy5401 71 GGWRSKRYSMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 71 Gg~r~~R~~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
|...+.|.+|||| +|+|++..+.+...+.
T Consensus 126 g~~~~~p~~fiID~~G~I~~~~~~~~~~gr 155 (224)
T 1prx_A 126 GMPVTARVVFVFGPDKKLKLSILYPATTGR 155 (224)
T ss_dssp SCCTTCCEEEEECTTSBEEEEEECCTTBCC
T ss_pred CccccceEEEEECCCCEEEEEEecCCCCCC
Confidence 2124569999999 9999999987644343
No 20
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=99.61 E-value=9.7e-16 Score=114.60 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=77.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
+++|.|.+.+++|+++|+ +|++||+|++++|++|.+.. +..-+|++++|++++++++||+..+.. | ..+.|.
T Consensus 51 tEl~~l~~l~~ef~~~gv-~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~--g-~~~~p~ 126 (249)
T 3a2v_A 51 TEFVSFARRYEDFQRLGV-DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAES--A-THTVRG 126 (249)
T ss_dssp HHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTC--S-SSCCEE
T ss_pred HHHHHHHHHHHHHHhCCc-EEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccC--C-Ccccce
Confidence 578999999999999999 79999999999999999852 222238999999999999999976532 2 346799
Q ss_pred EEEEe-CCeEEEEEEecCCCce
Q psy5401 79 SMVVD-DGKITQLNIEPDGTGL 99 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v~~~~~~~ 99 (109)
+|||| +|+|++..+.+.+.+.
T Consensus 127 ~fIID~dG~I~~~~~~~~~~gr 148 (249)
T 3a2v_A 127 VFIVDARGVIRTMLYYPMELGR 148 (249)
T ss_dssp EEEECTTSBEEEEEEECTTBCC
T ss_pred EEEECCCCeEEEEEecCCcccc
Confidence 99999 9999999988755443
No 21
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=99.61 E-value=9.5e-16 Score=117.92 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=66.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
+|+|.|.+. +..|+ +|+|||+|+++.|++|++++++. |++|||++++++++||+... | .+.|.+|||
T Consensus 42 ~e~~~~~~~----~~~~~-~v~gis~D~~~~~~~f~~~~~l~--fp~l~D~~~~v~~~ygv~~~----~--~~~r~tfiI 108 (322)
T 4eo3_A 42 REAVEFSRE----NFEKA-QVVGISRDSVEALKRFKEKNDLK--VTLLSDPEGILHEFFNVLEN----G--KTVRSTFLI 108 (322)
T ss_dssp HHHHHHHHS----CCTTE-EEEEEESCCHHHHHHHHHHHTCC--SEEEECTTCHHHHHTTCEET----T--EECCEEEEE
T ss_pred HHHHHHHHH----hhCCC-EEEEEeCCCHHHHHHHHHhhCCc--eEEEEcCchHHHHhcCCCCC----C--cCccEEEEE
Confidence 356666432 33578 79999999999999999999996 99999999999999999642 4 678999999
Q ss_pred e-CCeEEEEEEec
Q psy5401 83 D-DGKITQLNIEP 94 (109)
Q Consensus 83 d-dG~V~~~~v~~ 94 (109)
| ||+|++++..-
T Consensus 109 d~~G~i~~~~~~v 121 (322)
T 4eo3_A 109 DRWGFVRKEWRRV 121 (322)
T ss_dssp CTTSBEEEEEESC
T ss_pred CCCCEEEEEEeCC
Confidence 9 99999998754
No 22
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=99.60 E-value=1.5e-15 Score=112.16 Aligned_cols=89 Identities=24% Similarity=0.388 Sum_probs=77.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.|.+.+++|+++|+ +|++||+|+++.+++|.+.. ++ .+++++|++++++++||+..+. .| .+
T Consensus 95 ~el~~l~~l~~~~~~~gv-~vv~Is~D~~~~~~~~~~~~~~~~~~~~~--~fp~l~D~~~~v~~~ygv~~~~--~g--~~ 167 (240)
T 3qpm_A 95 TEIIAFSDRVHEFRAINT-EVVACSVDSQFTHLAWIITPRKQGGLGPM--KIPLLSDLTHQISKDYGVYLED--QG--HT 167 (240)
T ss_dssp HHHHHHHHHHHHHHTTTE-EEEEEESSCHHHHHHHHHSCGGGTCCCSC--SSCEEECTTSHHHHHTTCEETT--TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHhhcCCCCC--ceeEEeCchHHHHHHhCCcccc--CC--Cc
Confidence 478999999999999999 79999999999999999876 34 3999999999999999997653 24 57
Q ss_pred eEEEEEEe-CCeEEEEEEecCCCc
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDGTG 98 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~~~ 98 (109)
.|.+|||| ||+|++..+.+.+.+
T Consensus 168 ~p~~flID~~G~I~~~~~~~~~~~ 191 (240)
T 3qpm_A 168 LRGLFIIDEKGVLRQITMNDLPVG 191 (240)
T ss_dssp CEEEEEECTTSBEEEEEEECTTBC
T ss_pred cceEEEEcCCCeEEEEEecCCCCC
Confidence 79999999 999999998765433
No 23
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=99.60 E-value=3.2e-15 Score=105.54 Aligned_cols=86 Identities=21% Similarity=0.449 Sum_probs=76.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.|.+.+++|+++|+ +|++||+|++..+++|++.+ ++. +++++|++++++++||+.... .| ++.|.
T Consensus 48 ~e~~~l~~~~~~~~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~--fp~l~D~~~~~~~~ygv~~~~--~g--~~~p~ 120 (186)
T 1n8j_A 48 TELGDVADHYEELQKLGV-DVYSVSTDTHFTHKAWHSSSETIAKIK--YAMIGDPTGALTRNFDNMRED--EG--LADRA 120 (186)
T ss_dssp HHHHHHHHHHHHHHHTTE-EEEEEESSCHHHHHHHHHHCTTGGGCC--SEEEECTTSHHHHHTTCEETT--TT--EECEE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHcCcccCCc--eeEEECCchHHHHHhCCccCC--CC--ceeeE
Confidence 578999999999999999 79999999999999999998 553 899999999999999997643 24 56799
Q ss_pred EEEEe-CCeEEEEEEecC
Q psy5401 79 SMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v~~~ 95 (109)
+|||| +|+|++..+.+.
T Consensus 121 ~~lID~~G~i~~~~~~~~ 138 (186)
T 1n8j_A 121 TFVVDPQGIIQAIEVTAE 138 (186)
T ss_dssp EEEECTTSBEEEEEEECT
T ss_pred EEEECCCCeEEEEEecCC
Confidence 99999 999999998753
No 24
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=99.56 E-value=7.4e-15 Score=106.07 Aligned_cols=87 Identities=21% Similarity=0.363 Sum_probs=75.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.|.+.+++|+++|+ +|++||+|+++.+++|.+.. ++ ++++++|++++++++||+..+. .| .+
T Consensus 66 ~e~~~l~~l~~~~~~~~v-~vv~Is~D~~~~~~~~~~~~~~~~g~~~~--~fp~l~D~~~~~~~~ygv~~~~--~g--~~ 138 (211)
T 2pn8_A 66 TEIIAFGDRLEEFRSINT-EVVACSVDSQFTHLAWINTPRRQGGLGPI--RIPLLSDLTHQISKDYGVYLED--SG--HT 138 (211)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCSC--SSCEEECTTSHHHHHTTCEETT--TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHhhhccCccCC--ceEEEECCchHHHHHcCCcccC--CC--cc
Confidence 478999999999999999 79999999999999999887 34 3899999999999999997543 24 57
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.|.+|||| +|+|++..+.+.+
T Consensus 139 ~p~~~lID~~G~I~~~~~g~~~ 160 (211)
T 2pn8_A 139 LRGLFIIDDKGILRQITLNDLP 160 (211)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred cceEEEECCCCEEEEEEecCCC
Confidence 79999999 9999999987533
No 25
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=99.55 E-value=1.4e-14 Score=105.66 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=75.1
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCC-CceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAE-GKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~-~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|.+.. ++. -.+++++|++++++++||+. +. .| ++.|
T Consensus 74 ~e~p~l~~l~~~~~~~~v-~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~-~~--~g--~~~P 147 (221)
T 2c0d_A 74 TEIIEFNKHIKDFENKNV-ELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVL-YD--NS--FALR 147 (221)
T ss_dssp HHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCE-ET--TT--EECE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCc-cc--CC--Cccc
Confidence 578999999999999999 79999999999999999988 221 13899999999999999997 43 24 5679
Q ss_pred EEEEEe-CCeEEEEEEecC
Q psy5401 78 YSMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~~~ 95 (109)
.+|||| +|+|++..+.+.
T Consensus 148 ~~~lID~~G~I~~~~~g~~ 166 (221)
T 2c0d_A 148 GLFIIDKNGCVRHQTVNDL 166 (221)
T ss_dssp EEEEECTTSBEEEEEEECT
T ss_pred eEEEECCCCeEEEEEecCC
Confidence 999999 999999998754
No 26
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=99.52 E-value=4.7e-14 Score=98.87 Aligned_cols=86 Identities=12% Similarity=0.184 Sum_probs=74.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC--ceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG--GWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G--g~r~~R~~f 80 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|++.+++. +++++|++++++++||+.......| .....|.+|
T Consensus 69 ~el~~l~~l~~~~~~~~~-~vv~Vs~D~~~~~~~~~~~~~~~--f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~ 145 (179)
T 3ixr_A 69 TEGLEFNLLLPQFEQINA-TVLGVSRDSVKSHDSFCAKQGFT--FPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTF 145 (179)
T ss_dssp HHHHHHHHHHHHHHTTTE-EEEEEESCCHHHHHHHHHHHTCC--SCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHcCCc--eEEEECCchHHHHHcCCcccccccCcccCCcceEEE
Confidence 478999999999999999 79999999999999999999985 9999999999999999976432222 122468999
Q ss_pred EEe-CCeEEEEE
Q psy5401 81 VVD-DGKITQLN 91 (109)
Q Consensus 81 iVd-dG~V~~~~ 91 (109)
||| +|+|++.+
T Consensus 146 lID~~G~I~~~~ 157 (179)
T 3ixr_A 146 LIGPTHRIVEAW 157 (179)
T ss_dssp EECTTSBEEEEE
T ss_pred EECCCCEEEEEE
Confidence 999 99999998
No 27
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=99.51 E-value=4.2e-14 Score=102.21 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=75.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|++.|+ +|++||+|+++.+++|.+.. ++ ++++++|++++++++||+..+ .| .+
T Consensus 70 ~~~~~l~~l~~~~~~~~v-~vv~Is~D~~~~~~~~~~~~~~~~g~~~~--~fp~l~D~~~~~~~~ygv~~~---~g--~~ 141 (213)
T 2i81_A 70 SEIIALDKALDAFHERNV-ELLGCSVDSKYTHLAWKKTPLAKGGIGNI--KHTLLSDITKSISKDYNVLFD---DS--VS 141 (213)
T ss_dssp HHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHSSCGGGTCCCSC--SSEEEECTTSHHHHHTTCEET---TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCccCC--CceEEECCchHHHHHhCCccc---cC--Cc
Confidence 468999999999999999 79999999999999999887 44 399999999999999999763 24 56
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.|.+|||| +|+|++..+.+.+
T Consensus 142 ~p~~~lID~~G~i~~~~~~~~~ 163 (213)
T 2i81_A 142 LRAFVLIDMNGIVQHLLVNNLA 163 (213)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred ccEEEEECCCCEEEEEEecCCC
Confidence 79999999 9999999887544
No 28
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=99.50 E-value=1.2e-13 Score=94.11 Aligned_cols=86 Identities=15% Similarity=0.268 Sum_probs=74.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCC--ceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLG--GWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~G--g~r~~R~~f 80 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|++.+++. +++++|++++++++||+.......| .....|.+|
T Consensus 53 ~~~~~l~~~~~~~~~~~~-~vv~vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~ 129 (163)
T 3gkn_A 53 TEGLDFNALLPEFDKAGA-KILGVSRDSVKSHDNFCAKQGFA--FPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTF 129 (163)
T ss_dssp HHHHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHCCS--SCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHhCCC--ceEEECCcHHHHHHhCCccccccccccccCcceEEE
Confidence 478999999999999999 79999999999999999999985 9999999999999999976432223 111268899
Q ss_pred EEe-CCeEEEEE
Q psy5401 81 VVD-DGKITQLN 91 (109)
Q Consensus 81 iVd-dG~V~~~~ 91 (109)
||| +|+|++.+
T Consensus 130 lid~~G~i~~~~ 141 (163)
T 3gkn_A 130 LLSPEGQVVQAW 141 (163)
T ss_dssp EECTTSCEEEEE
T ss_pred EECCCCeEEEEE
Confidence 999 99999988
No 29
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=99.48 E-value=7.7e-14 Score=98.14 Aligned_cols=88 Identities=17% Similarity=0.291 Sum_probs=75.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|.+.. ++ ++++++|++++++++||+..+ .| .+
T Consensus 49 ~~~~~l~~~~~~~~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~~~--~~~~l~D~~~~~~~~~gv~~~---~g--~~ 120 (192)
T 2h01_A 49 SEIIALDKALDSFKERNV-ELLGCSVDSKFTHLAWKKTPLSQGGIGNI--KHTLISDISKSIARSYDVLFN---ES--VA 120 (192)
T ss_dssp HHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCSC--SSEEEECTTSHHHHHTTCEET---TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhHHhhCCccCC--CcCeEECCcHHHHHHhCCcCc---CC--ce
Confidence 578999999999999999 79999999999999999987 44 389999999999999999763 24 46
Q ss_pred eEEEEEEe-CCeEEEEEEecCCCc
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDGTG 98 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~~~ 98 (109)
.|.+|||| +|+|++..+.+.+.+
T Consensus 121 ~P~~~liD~~G~i~~~~~g~~~~~ 144 (192)
T 2h01_A 121 LRAFVLIDKQGVVQHLLVNNLALG 144 (192)
T ss_dssp CCEEEEECTTSBEEEEEEGGGSSG
T ss_pred eeEEEEEcCCCEEEEEEeCCCCCC
Confidence 68899999 999999988754433
No 30
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=99.47 E-value=1.4e-13 Score=99.77 Aligned_cols=87 Identities=23% Similarity=0.413 Sum_probs=75.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.|.+.+++|+++|+ +|++||+|+++.+++|.+.. ++ ++++++|.+++++++||+..+.. | .+
T Consensus 74 ~~~~~l~~l~~~~~~~~v-~vv~Is~D~~~~~~~~~~~~~~~~g~~~~--~fp~l~D~~~~i~~~ygv~~~~~--g--~~ 146 (220)
T 1zye_A 74 TEIIAFSDKASEFHDVNC-EVVAVSVDSHFSHLAWINTPRKNGGLGHM--NIALLSDLTKQISRDYGVLLEGP--G--LA 146 (220)
T ss_dssp HHHHHHHHHHHHHHHTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCSC--SSEEEECTTSHHHHHTTCEETTT--T--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHHhCCCcCC--ceEEEECCcHHHHHHhCCeecCC--C--cc
Confidence 468999999999999999 79999999999999999876 44 39999999999999999976532 3 56
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.|.+|||| +|+|++..+.+.+
T Consensus 147 ~P~~~liD~~G~I~~~~~g~~~ 168 (220)
T 1zye_A 147 LRGLFIIDPNGVIKHLSVNDLP 168 (220)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred cceEEEECCCCEEEEEEecCCC
Confidence 79999999 9999999887543
No 31
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=99.45 E-value=6.6e-14 Score=96.50 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=73.2
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC-CchHhHhhCCccccc-cCCceeEeEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIP-VLGGWRSKRYS 79 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~-~~~~~k~~G~~~~~~-~~Gg~r~~R~~ 79 (109)
..++|.|.+.+++| .|+ +|++||.|++..+++|++.+++. ++++++|+ +++++++||+..... ..| ...|.+
T Consensus 60 ~~e~~~l~~~~~~~--~~v-~vv~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~~~~~g--~~~p~~ 133 (165)
T 1q98_A 60 ATSVRKFNQQAAKL--SNT-IVLCISADLPFAQARFCGAEGIE-NAKTVSTFRNHALHSQLGVDIQTGPLAG--LTSRAV 133 (165)
T ss_dssp CHHHHHHHHHHHHS--TTE-EEEEEESSCHHHHTTCTTTTTCT-TEEEEECTTCTHHHHHTTCEECSSTTTT--SBCCEE
T ss_pred HHHHHHHHHHHHHc--CCC-EEEEEeCCCHHHHHHHHHHcCCC-ceEEeeccccchHHHHhCceecccccCC--ccceeE
Confidence 35789999999999 789 79999999999999999999883 29999998 899999999975421 123 356899
Q ss_pred EEEe-CCeEEEEEEec
Q psy5401 80 MVVD-DGKITQLNIEP 94 (109)
Q Consensus 80 fiVd-dG~V~~~~v~~ 94 (109)
|||| +|+|++.++.+
T Consensus 134 ~liD~~G~i~~~~~~~ 149 (165)
T 1q98_A 134 IVLDEQNNVLHSQLVE 149 (165)
T ss_dssp EEECTTSBEEEEEECS
T ss_pred EEEcCCCEEEEEEeCC
Confidence 9999 99999999853
No 32
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=99.45 E-value=2e-13 Score=96.96 Aligned_cols=87 Identities=21% Similarity=0.327 Sum_probs=75.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|++.|+ +|++||+|++..+++|.+.. ++. +++++|.+++++++||+.... .| .+
T Consensus 54 ~~~~~l~~l~~~~~~~~v-~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~ygv~~~~--~g--~~ 126 (202)
T 1uul_A 54 TEICQFSDRVKEFSDIGC-EVLACSMDSEYSHLAWTSIERKRGGLGQMN--IPILADKTKCIMKSYGVLKEE--DG--VA 126 (202)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHHSCGGGTCCCSCS--SCEEECTTCHHHHHHTCEETT--TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCCCCCc--eeEEECCchHHHHHcCCccCC--CC--ce
Confidence 468999999999999999 79999999999999999987 443 899999999999999997543 23 56
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.|.+|||| +|+|++..+...+
T Consensus 127 ~P~~~lid~~G~i~~~~~g~~~ 148 (202)
T 1uul_A 127 YRGLFIIDPKQNLRQITVNDLP 148 (202)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred eeEEEEECCCCEEEEEEeCCCC
Confidence 79999999 9999999887544
No 33
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=99.44 E-value=3.6e-13 Score=92.70 Aligned_cols=84 Identities=21% Similarity=0.367 Sum_probs=71.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC-CchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~-~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++ .|+ +|++||.|++..+++|++.+++. ++++++|+ +++++++||+.... .| .+.|.+||
T Consensus 64 ~~~~~l~~~~~~---~~~-~vv~is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~--~g--~~~p~~~l 134 (166)
T 3p7x_A 64 QQTRKFNSDASK---EEG-IVLTISADLPFAQKRWCASAGLD-NVITLSDHRDLSFGENYGVVMEE--LR--LLARAVFV 134 (166)
T ss_dssp HHHHHHHHHSCT---TTS-EEEEEESSCHHHHHHHHHHHTCS-SCEEEECTTTCHHHHHHTCEETT--TT--EECCEEEE
T ss_pred HHHHHHHHHhhc---CCC-EEEEEECCCHHHHHHHHHHcCCC-ceEEccCCchhHHHHHhCCcccc--CC--ceeeEEEE
Confidence 356777777766 789 79999999999999999999983 29999999 99999999997653 24 46789999
Q ss_pred Ee-CCeEEEEEEecC
Q psy5401 82 VD-DGKITQLNIEPD 95 (109)
Q Consensus 82 Vd-dG~V~~~~v~~~ 95 (109)
|| +|+|++.++..+
T Consensus 135 iD~~G~i~~~~~~~~ 149 (166)
T 3p7x_A 135 LDADNKVVYKEIVSE 149 (166)
T ss_dssp ECTTCBEEEEEECSB
T ss_pred ECCCCeEEEEEEcCC
Confidence 99 999999988653
No 34
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=99.43 E-value=1.5e-13 Score=98.44 Aligned_cols=87 Identities=15% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC-CchHhHhhCCcccccc-CCceeEeEEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPV-LGGWRSKRYS 79 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~-~~~~~k~~G~~~~~~~-~Gg~r~~R~~ 79 (109)
..++|.|.+.+++| .|+ +|++||.|++..+++|++..++. .+++++|+ +++++++||+...... .| .+.|.+
T Consensus 95 ~~e~~~l~~l~~~~--~~v-~vv~Is~D~~~~~~~~~~~~~~~-~f~~l~D~~~~~~~~~ygv~~~~~~~~g--~~~p~~ 168 (200)
T 3zrd_A 95 AASVRKFNQLAGEL--ENT-VVLCISSDLPFAQSRFCGAEGLS-NVITLSTLRGADFKQAYGVAITEGPLAG--LTARAV 168 (200)
T ss_dssp CHHHHHHHHHHHTS--TTE-EEEEEESSCHHHHTTCTTTTTCT-TEEEEETTSCTHHHHHTTCEECSSTTTT--SBCCEE
T ss_pred HHHHHHHHHHHHHh--CCC-EEEEEECCCHHHHHHHHHHcCCC-CceEEecCchHHHHHHhCceeecccCCC--ccccEE
Confidence 35789999999999 689 79999999999999999999983 39999999 9999999999765311 23 467999
Q ss_pred EEEe-CCeEEEEEEec
Q psy5401 80 MVVD-DGKITQLNIEP 94 (109)
Q Consensus 80 fiVd-dG~V~~~~v~~ 94 (109)
|||| ||+|++.++..
T Consensus 169 ~lID~~G~I~~~~~~~ 184 (200)
T 3zrd_A 169 VVLDGQDNVIYSELVN 184 (200)
T ss_dssp EEECTTSBEEEEEECS
T ss_pred EEECCCCeEEEEEecC
Confidence 9999 99999999865
No 35
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=99.43 E-value=2.4e-13 Score=93.33 Aligned_cols=84 Identities=15% Similarity=0.275 Sum_probs=71.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++| .|+ +|++||.|++..+++|++.+++. ++++++| ++++++++||+.... .| ...|.+||
T Consensus 60 ~~~~~l~~~~~~~--~~v-~vv~is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~gv~~~~--~g--~~~p~~~l 131 (163)
T 1psq_A 60 TQTRRFNEELAGL--DNT-VVLTVSMDLPFAQKRWCGAEGLD-NAIMLSDYFDHSFGRDYALLINE--WH--LLARAVFV 131 (163)
T ss_dssp HHHHHHHHHTTTC--TTE-EEEEEESSCHHHHHHHHHHHTCT-TSEEEECTTTCHHHHHHTCBCTT--TC--SBCCEEEE
T ss_pred HHHHHHHHHHHHc--CCc-EEEEEECCCHHHHHHHHHhcCCC-CcEEecCCchhHHHHHhCCcccc--CC--ceEEEEEE
Confidence 4678888888888 689 79999999999999999999983 2999999 899999999997542 23 34589999
Q ss_pred Ee-CCeEEEEEEec
Q psy5401 82 VD-DGKITQLNIEP 94 (109)
Q Consensus 82 Vd-dG~V~~~~v~~ 94 (109)
|| +|+|++.++..
T Consensus 132 iD~~G~i~~~~~g~ 145 (163)
T 1psq_A 132 LDTDNTIRYVEYVD 145 (163)
T ss_dssp ECTTCBEEEEEECS
T ss_pred EcCCCeEEEEEecC
Confidence 99 99999999864
No 36
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=99.39 E-value=2.5e-12 Score=87.57 Aligned_cols=84 Identities=23% Similarity=0.382 Sum_probs=71.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.++|.|.+.+++|+++| +|++||+|++..+++|.+.+++. +++++|++++++++||+.... ..| ..|.+|||
T Consensus 53 ~~~~~l~~~~~~~~~~~--~vv~is~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~gv~~~p-~~g---~~~~~~li 124 (159)
T 2a4v_A 53 RQASGFRDNYQELKEYA--AVFGLSADSVTSQKKFQSKQNLP--YHLLSDPKREFIGLLGAKKTP-LSG---SIRSHFIF 124 (159)
T ss_dssp HHHHHHHHHHHHHTTTC--EEEEEESCCHHHHHHHHHHHTCS--SEEEECTTCHHHHHHTCBSSS-SSC---BCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCC--cEEEEeCCCHHHHHHHHHHhCCC--ceEEECCccHHHHHhCCcccc-cCC---ccceEEEE
Confidence 47899999999999888 69999999999999999999985 999999999999999997542 122 35677777
Q ss_pred eCCeEEEEEEec
Q psy5401 83 DDGKITQLNIEP 94 (109)
Q Consensus 83 ddG~V~~~~v~~ 94 (109)
.||+|++.+...
T Consensus 125 ~~G~i~~~~~g~ 136 (159)
T 2a4v_A 125 VDGKLKFKRVKI 136 (159)
T ss_dssp ETTEEEEEEESC
T ss_pred cCCEEEEEEccC
Confidence 999999998753
No 37
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=99.39 E-value=8e-13 Score=95.74 Aligned_cols=87 Identities=21% Similarity=0.388 Sum_probs=75.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|.+.. ++. +++++|++++++++||+.... .| ..
T Consensus 87 ~~~p~l~~l~~~~~~~~v-~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~ygv~~~~--~g--~~ 159 (222)
T 3ztl_A 87 TEIIAFSDQVEEFNSRNC-QVIACSTDSQYSHLAWDNLDRKSGGLGHMK--IPLLADRKQEISKAYGVFDEE--DG--NA 159 (222)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHHSCGGGTSCCSCS--SCEEECSSSHHHHHTTCBCTT--TS--SB
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHhhhhccccccc--eeEEeCCchHHHHHcCCeecC--CC--Cc
Confidence 478999999999999999 79999999999999999876 443 999999999999999997653 23 35
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.+.+|||| +|+|++......+
T Consensus 160 ~P~~~lID~~G~I~~~~~g~~~ 181 (222)
T 3ztl_A 160 FRGLFIIDPNGILRQITINDKP 181 (222)
T ss_dssp CEEEEEECTTSEEEEEEEECTT
T ss_pred cceEEEECCCCeEEEEEecCCC
Confidence 68899999 9999999987644
No 38
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=99.39 E-value=1.1e-12 Score=92.75 Aligned_cols=87 Identities=22% Similarity=0.390 Sum_probs=74.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-------CCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-------NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-------~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|++.|+ +|++||+|++..+++|.+.. ++. +++++|.+++++++||+.... .| ..
T Consensus 52 ~~~~~l~~l~~~~~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--~p~l~D~~~~~~~~~gv~~~~--~~--~~ 124 (197)
T 1qmv_A 52 TEIIAFSNRAEDFRKLGC-EVLGVSVDSQFTHLAWINTPRKEGGLGPLN--IPLLADVTRRLSEDYGVLKTD--EG--IA 124 (197)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCSCS--SCEEECTTCHHHHHTTCEETT--TT--EE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHHHhhCCCCCCc--eEEEECCcHHHHHHcCCccCC--CC--ce
Confidence 468899999999999999 79999999999999999876 443 899999999999999997542 23 46
Q ss_pred eEEEEEEe-CCeEEEEEEecCC
Q psy5401 76 KRYSMVVD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~~~~ 96 (109)
.|.+|||| +|+|++..+...+
T Consensus 125 ~P~~~lid~~G~i~~~~~g~~~ 146 (197)
T 1qmv_A 125 YRGLFIIDGKGVLRQITVNDLP 146 (197)
T ss_dssp CEEEEEECTTSBEEEEEEECTT
T ss_pred eeEEEEECCCCcEEEEEeCCCC
Confidence 78999999 9999999887544
No 39
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=99.35 E-value=1.7e-12 Score=89.57 Aligned_cols=85 Identities=18% Similarity=0.373 Sum_probs=71.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCcccccc-CCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPV-LGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~~~-~Gg~r~~R~~f 80 (109)
.++|.+.+.+++| .|+ +|++||+|++..+++|++.+++. .+++++| +++++ ++||+...... .| ...|.+|
T Consensus 65 ~~~~~l~~~~~~~--~~v-~vv~Is~d~~~~~~~~~~~~~~~-~~~~l~D~~~~~~-~~~gv~~~~~~~~g--~~~p~~~ 137 (171)
T 2yzh_A 65 TETKKFNEIMAGM--EGV-DVTVVSMDLPFAQKRFCESFNIQ-NVTVASDFRYRDM-EKYGVLIGEGALKG--ILARAVF 137 (171)
T ss_dssp HHHHHHHHHTTTC--TTE-EEEEEESSCHHHHHHHHHHTTCC-SSEEEECTTTCGG-GGGTCBBCSSTTTT--SBCCEEE
T ss_pred HHHHHHHHHHHHc--CCc-eEEEEeCCCHHHHHHHHHHcCCC-CeEEeecCccCcH-HHhCCEecccccCC--ceeeEEE
Confidence 4678888888888 689 79999999999999999999983 3999999 89999 99999764311 12 4568999
Q ss_pred EEe-CCeEEEEEEec
Q psy5401 81 VVD-DGKITQLNIEP 94 (109)
Q Consensus 81 iVd-dG~V~~~~v~~ 94 (109)
||| +|+|++.++.+
T Consensus 138 liD~~G~i~~~~~~~ 152 (171)
T 2yzh_A 138 IIDKEGKVAYVQLVP 152 (171)
T ss_dssp EECTTSBEEEEEECS
T ss_pred EEcCCCeEEEEEeCC
Confidence 999 99999999853
No 40
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=99.35 E-value=4.1e-12 Score=88.75 Aligned_cols=86 Identities=27% Similarity=0.544 Sum_probs=75.2
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|.+.+ ++. +++++|++++++++||+..+.. | ...+.
T Consensus 49 ~~~~~l~~~~~~~~~~~v-~vv~vs~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~~--g--~~~P~ 121 (187)
T 1we0_A 49 TELEDVQKEYAELKKLGV-EVYSVSTDTHFVHKAWHENSPAVGSIE--YIMIGDPSQTISRQFDVLNEET--G--LADRG 121 (187)
T ss_dssp HHHHHHHHHHHHHHHTTE-EEEEEESSCHHHHHHHHHSCHHHHTCC--SEEEECTTCHHHHHTTCEETTT--T--EECEE
T ss_pred HHHHHHHHHHHHHHHcCC-EEEEEECCCHHHHHHHHHHhccccCCC--ceEEECCchHHHHHhCCCcCCC--C--ceeeE
Confidence 578999999999999999 79999999999999999988 664 9999999999999999975432 3 46689
Q ss_pred EEEEe-CCeEEEEEEecC
Q psy5401 79 SMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v~~~ 95 (109)
+|||| +|+|++......
T Consensus 122 ~~lid~~G~i~~~~~g~~ 139 (187)
T 1we0_A 122 TFIIDPDGVIQAIEINAD 139 (187)
T ss_dssp EEEECTTSBEEEEEEECT
T ss_pred EEEECCCCeEEEEEecCC
Confidence 99998 999999988754
No 41
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.33 E-value=7.3e-12 Score=85.58 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=72.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.++|.+.+.+++|+++|+ +|++||+|++..+++|.+.+++. +++++|.+++++++||+... + ...+.+|||
T Consensus 47 ~~~~~l~~~~~~~~~~~v-~vv~vs~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~----~--~~~P~~~li 117 (161)
T 3drn_A 47 REASAFRDNWDLLKDYDV-VVIGVSSDDINSHKRFKEKYKLP--FILVSDPDKKIRELYGAKGF----I--LPARITFVI 117 (161)
T ss_dssp HHHHHHHHTHHHHHTTCE-EEEEEESCCHHHHHHHHHHTTCC--SEEEECTTSHHHHHTTCCCS----S--SCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHHHhCCC--ceEEECCcHHHHHHcCCCCc----C--cccceEEEE
Confidence 468999999999999999 79999999999999999999986 99999999999999998621 1 344788999
Q ss_pred e-CCeEEEEEEe
Q psy5401 83 D-DGKITQLNIE 93 (109)
Q Consensus 83 d-dG~V~~~~v~ 93 (109)
| +|+|++....
T Consensus 118 d~~G~i~~~~~g 129 (161)
T 3drn_A 118 DKKGIIRHIYNS 129 (161)
T ss_dssp CTTSBEEEEEEC
T ss_pred CCCCEEEEEEec
Confidence 9 9999999876
No 42
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=99.30 E-value=7.6e-12 Score=88.24 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=74.4
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh-------cCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK-------NNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~-------~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
..++|.+.+.+++|++.|+ +|++||+|++..+++|.+. .++. +++++|++++++++||+..+. | .
T Consensus 50 ~~~~~~l~~l~~~~~~~~v-~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~~---g--~ 121 (198)
T 1zof_A 50 PTEIIAFDKRVKDFHEKGF-NVIGVSIDSEQVHFAWKNTPVEKGGIGQVS--FPMVADITKSISRDYDVLFEE---A--I 121 (198)
T ss_dssp CTHHHHHHHTHHHHHHTTE-EEEEEESSCHHHHHHHHTSCGGGTCCCCCS--SCEEECTTSHHHHHTTCEETT---T--E
T ss_pred HHHHHHHHHHHHHHHHcCC-EEEEEECCCHHHHHHHHHhhhhcccccCce--eEEEECCchHHHHHhCCcccC---C--c
Confidence 3578999999999999999 7999999999999999988 5554 899999999999999997642 4 5
Q ss_pred EeEEEEEEe-CCeEEEEEEec
Q psy5401 75 SKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~~ 94 (109)
..+.+|||| +|+|++..+..
T Consensus 122 ~~P~~~lid~~G~i~~~~~g~ 142 (198)
T 1zof_A 122 ALRGAFLIDKNMKVRHAVIND 142 (198)
T ss_dssp ECEEEEEEETTTEEEEEEEES
T ss_pred ccceEEEECCCCEEEEEEecC
Confidence 668999999 99999998764
No 43
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=99.25 E-value=1.7e-11 Score=86.35 Aligned_cols=85 Identities=16% Similarity=0.380 Sum_probs=73.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc----CCCCceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN----NAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~----~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.+.+.+++|++.|+ +|++||+|++..+++|.+.+ ++. +++++|++++++++||+... .| ...+.
T Consensus 63 ~~~~~l~~l~~~~~~~~v-~vv~Vs~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~~---~g--~~~P~ 134 (195)
T 2bmx_A 63 TEIAAFSKLNDEFEDRDA-QILGVSIDSEFAHFQWRAQHNDLKTLP--FPMLSDIKRELSQAAGVLNA---DG--VADRV 134 (195)
T ss_dssp HHHHHHHHTHHHHHTTTE-EEEEEESSCHHHHHHHHHHCTTGGGCC--SCEEECTTSHHHHHHTCBCT---TS--SBCEE
T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCHHHHHHHHHHhccccCCc--eeEEeCCchHHHHHhCCccc---CC--Cccce
Confidence 478999999999998899 79999999999999999998 553 89999999999999999754 23 34578
Q ss_pred EEEEe-CCeEEEEEEecC
Q psy5401 79 SMVVD-DGKITQLNIEPD 95 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v~~~ 95 (109)
+|||| +|+|++..+...
T Consensus 135 ~~lid~~G~i~~~~~g~~ 152 (195)
T 2bmx_A 135 TFIVDPNNEIQFVSATAG 152 (195)
T ss_dssp EEEECTTSBEEEEEEECT
T ss_pred EEEEcCCCeEEEEEecCC
Confidence 99999 999999988653
No 44
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=99.20 E-value=1.4e-11 Score=83.30 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=72.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecC--CchHhHhhCCccccccCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP--NLEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~--~~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
.++|.+.+.+++|++.|+ +|++||+|++..+++|.+.++.. +++++|. ++++++.||+..+. .| ...|.+|
T Consensus 54 ~~~~~l~~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~~~~--~~--~p~~~~~ 126 (160)
T 1xvw_A 54 GELDQLRDHLPEFENDDS-AALAISVGPPPTHKIWATQSGFT--FPLLSDFWPHGAVSQAYGVFNEQ--AG--IANRGTF 126 (160)
T ss_dssp HHHHHHHHTGGGTSSSSE-EEEEEESCCHHHHHHHHHHHTCC--SCEEECTTTTTHHHHHTTCEETT--TT--EECSEEE
T ss_pred HHHHHHHHHHHHHHHCCc-EEEEEeCCCHHHHHHHHHhcCCC--ceEEecCCcChHHHHHcCCcccc--CC--CeeeeEE
Confidence 467889999999988899 79999999999999999999985 9999995 99999999997542 13 3457899
Q ss_pred EEe-CCeEEEEEEec
Q psy5401 81 VVD-DGKITQLNIEP 94 (109)
Q Consensus 81 iVd-dG~V~~~~v~~ 94 (109)
||| +|+|++.....
T Consensus 127 lid~~G~i~~~~~g~ 141 (160)
T 1xvw_A 127 VVDRSGIIRFAEMKQ 141 (160)
T ss_dssp EECTTSBEEEEEECC
T ss_pred EECCCCeEEEEEecC
Confidence 999 99999998764
No 45
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=99.17 E-value=5.3e-11 Score=82.64 Aligned_cols=84 Identities=17% Similarity=0.323 Sum_probs=65.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccc-cCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIP-VLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~-~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++ .|+ +|++||+|++..+++|.+..++. .+++++|++++++++||+..... ..| ...+.+||
T Consensus 62 ~~~~~l~~l~~~---~~v-~vv~Is~D~~~~~~~~~~~~~~~-~~~~l~D~~~~~~~~~gv~~~~~~~~g--~~~p~~~l 134 (175)
T 1xvq_A 62 TSVRTFDERAAA---SGA-TVLCVSKDLPFAQKRFCGAEGTE-NVMPASAFRDSFGEDYGVTIADGPMAG--LLARAIVV 134 (175)
T ss_dssp HHHHHHHHHHHH---TTC-EEEEEESSCHHHHTTCC-------CEEEEECTTSSHHHHTTCBBCSSTTTT--SBCSEEEE
T ss_pred HHHHHHHHHHhh---cCC-EEEEEECCCHHHHHHHHHHcCCC-CceEeeCCHHHHHHHhCCcccccccCC--cccceEEE
Confidence 467888888887 689 79999999999999999999883 39999999999999999975421 122 45688999
Q ss_pred Ee-CCeEEEEEEe
Q psy5401 82 VD-DGKITQLNIE 93 (109)
Q Consensus 82 Vd-dG~V~~~~v~ 93 (109)
|| +|+|++..+.
T Consensus 135 id~~G~I~~~~~g 147 (175)
T 1xvq_A 135 IGADGNVAYTELV 147 (175)
T ss_dssp ECTTSBEEEEEEC
T ss_pred ECCCCeEEEEEEC
Confidence 99 9999999974
No 46
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=99.17 E-value=3.8e-11 Score=82.01 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=71.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec-CCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD-~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++| .|+ +|++||.|++..+++|.+..++. .+++++| .+++++++||+.... .| ...+.+||
T Consensus 62 ~~~~~l~~l~~~~--~~~-~vv~is~d~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~v~~~~--~g--~~~p~~~l 133 (167)
T 2jsy_A 62 AQTRRFNEEAAKL--GDV-NVYTISADLPFAQARWCGANGID-KVETLSDHRDMSFGEAFGVYIKE--LR--LLARSVFV 133 (167)
T ss_dssp HTHHHHHHHHHHH--SSC-EEEEEECSSGGGTSCCGGGSSCT-TEEEEEGGGTCHHHHHTTCBBTT--TC--SBCCEEEE
T ss_pred HHHHHHHHHHHHc--CCC-EEEEEECCCHHHHHHHHHhcCCC-CceEeeCCchhHHHHHhCCcccc--CC--ceeeEEEE
Confidence 4789999999999 789 79999999999999999999984 3999999 999999999987542 23 34588999
Q ss_pred Ee-CCeEEEEEEec
Q psy5401 82 VD-DGKITQLNIEP 94 (109)
Q Consensus 82 Vd-dG~V~~~~v~~ 94 (109)
|| +|+|++..+..
T Consensus 134 id~~G~i~~~~~g~ 147 (167)
T 2jsy_A 134 LDENGKVVYAEYVS 147 (167)
T ss_dssp ECTTSCEEEEEECS
T ss_pred EcCCCcEEEEEecC
Confidence 99 99999999864
No 47
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=99.00 E-value=1.3e-09 Score=78.27 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=69.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
.++|.+.+.+++|+++|+ +|++||+ |++..+++|.+..++. +++++|.+++++++||+..
T Consensus 76 ~~~~~l~~l~~~~~~~~v-~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~--~~~l~D~~~~~~~~~~v~~--------- 143 (218)
T 3u5r_E 76 LIREALAKFAGDYAGQGL-AVVAINSNDAQAFPEETLERVGAEVKAYGYG--FPYLKDASQSVAKAYGAAC--------- 143 (218)
T ss_dssp TTHHHHHHHHHHHTTTTE-EEEEEECSCTTTCGGGSHHHHHHHHHHHTCC--SCEEECTTCHHHHHHTCCE---------
T ss_pred HHHHHHHHHHHHHHhCCc-EEEEEECCcccccccCCHHHHHHHHHHhCCC--ccEEECCccHHHHHcCCCC---------
Confidence 578999999999999999 7999999 7999999999999985 9999999999999998742
Q ss_pred EeEEEEEEe-CCeEEEEEEe
Q psy5401 75 SKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~ 93 (109)
-+.+|||| +|+|+|....
T Consensus 144 -~P~~~liD~~G~i~~~g~~ 162 (218)
T 3u5r_E 144 -TPDFFLYDRERRLVYHGQF 162 (218)
T ss_dssp -ESEEEEECTTCBEEEEECS
T ss_pred -CCeEEEECCCCcEEEeccc
Confidence 24779998 9999987653
No 48
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=98.80 E-value=2.6e-08 Score=67.57 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=68.1
Q ss_pred CcchhHHHcHHHHHhCC--CCEEEEEecC----CHHHHHHHHHhcCCCCce---EEeecCCchHhHhhCCc-----cccc
Q psy5401 3 THLPGYLAKEKDLKAKG--IHEIFCIAVN----DAFVMEAWCRKNNAEGKI---RFLADPNLEFTKKLGVE-----HEIP 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~G--vd~V~~iS~d----d~f~~~aW~~~~~~~~~i---~~lsD~~~~~~k~~G~~-----~~~~ 68 (109)
.++|.+.+.+++|++.| + +|++||+| ++..+++|.+.+++. + ++++|++++++++|++. ....
T Consensus 51 ~~~~~l~~l~~~~~~~~~~~-~vv~is~d~~~d~~~~~~~~~~~~~~~--~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~ 127 (174)
T 1xzo_A 51 PMTAHMTDLQKKLKAENIDV-RIISFSVDPENDKPKQLKKFAANYPLS--FDNWDFLTGYSQSEIEEFALKSFKAIVKKP 127 (174)
T ss_dssp SHHHHHHHHHHHHHHTTCCC-EEEEEESCTTTCCHHHHHHHHTTSCCC--GGGEEEEBCSCHHHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHhhhcCCcE-EEEEEEeCCCCCCHHHHHHHHHHcCCC--CcceEEEeCCCHHHHHHHHHhhcCeeEeec
Confidence 56889999999999887 8 79999997 799999999999885 6 99999999999888741 1100
Q ss_pred cCC-ceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 69 VLG-GWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 69 ~~G-g~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
..+ +....-.+|||| +|+|++.....
T Consensus 128 ~~~~~~~~~p~~~lid~~G~i~~~~~g~ 155 (174)
T 1xzo_A 128 EGEDQVIHQSSFYLVGPDGKVLKDYNGV 155 (174)
T ss_dssp SSCCSCCSCCEEEEECTTSEEEEEEESS
T ss_pred CCCCeeeeeeEEEEECCCCeEEEEEcCC
Confidence 000 112223679999 99999987754
No 49
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=98.78 E-value=8.5e-09 Score=69.78 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=69.3
Q ss_pred CcchhHHHcHHHHHhC---CCCEEEEEecC----CHHHHHHHHHhcCCCCceEEeecCC---chHhHhhCCcccccc---
Q psy5401 3 THLPGYLAKEKDLKAK---GIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLADPN---LEFTKKLGVEHEIPV--- 69 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~---Gvd~V~~iS~d----d~f~~~aW~~~~~~~~~i~~lsD~~---~~~~k~~G~~~~~~~--- 69 (109)
.++|.+.+.+++|+++ ++ +|++||.| ++..+++|.+.++.. +++++|+. ++++++||+..+...
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~v-~vv~is~d~~~d~~~~~~~~~~~~~~~--~~~l~d~~~~~~~~~~~~gv~~~~~~~~~ 129 (172)
T 2k6v_A 53 TTLLALKRAYEKLPPKAQERV-QVIFVSVDPERDPPEVADRYAKAFHPS--FLGLSGSPEAVREAAQTFGVFYQKSQYRG 129 (172)
T ss_dssp HHHHHHHHHHTTSCHHHHTTE-EEEEEESCTTTCCHHHHHHHHHHHCTT--EEEECCCHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhhccCCE-EEEEEEECCCCCCHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHhcCeEEEeccCCC
Confidence 3678888888888765 68 79999965 789999999999975 99999988 799999998754311
Q ss_pred CC--ceeEeEEEEEEeCCeEEEEEEe
Q psy5401 70 LG--GWRSKRYSMVVDDGKITQLNIE 93 (109)
Q Consensus 70 ~G--g~r~~R~~fiVddG~V~~~~v~ 93 (109)
.+ +.+..+.++|||+|+|++....
T Consensus 130 ~~~~~i~~~P~~~lid~G~i~~~~~g 155 (172)
T 2k6v_A 130 PGEYLVDHTATTFVVKEGRLVLLYSP 155 (172)
T ss_dssp TTEEEEEECCCEEEEETTEEEEEECH
T ss_pred CCCceEecCCEEEEEECCEEEEEECC
Confidence 01 2345578899999999988654
No 50
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.77 E-value=2.5e-08 Score=69.13 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=67.1
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
.++|.+.+.+++|+++|+ .|+.|+. |++..+++|.+.+++. ++++.|.++++++.||+..
T Consensus 63 ~~~~~l~~l~~~~~~~~v-~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~--------- 130 (196)
T 2ywi_A 63 HVQHELVRLANDYMPKGV-SFVAINSNDAEQYPEDSPENMKKVAEELGYP--FPYLYDETQEVAKAYDAAC--------- 130 (196)
T ss_dssp HHHHHHHHHHHHHGGGTC-EEEEEECSCTTTCGGGSHHHHHHHHHHHTCC--SCEEECSSCHHHHHHTCCE---------
T ss_pred HHHHHHHHHHHHHHhCCc-EEEEEECCccccccccCHHHHHHHHHHcCCC--ceEEECCchHHHHHhCCCC---------
Confidence 467889999999998899 7999999 6899999999999985 8999999999999998742
Q ss_pred EeEEEEEEe-CCeEEEEEEe
Q psy5401 75 SKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~v~ 93 (109)
...+|||| +|+|++....
T Consensus 131 -~P~~~lid~~G~i~~~~~~ 149 (196)
T 2ywi_A 131 -TPDFYIFDRDLKCVYRGQL 149 (196)
T ss_dssp -ESEEEEEETTCBEEEEECS
T ss_pred -CCeEEEEcCCCeEEEcccc
Confidence 23568998 9999998653
No 51
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.74 E-value=2.8e-08 Score=66.44 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=66.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEec-------CCHHHHHHHHHhcCCCCceEEeecCCch------HhHhhCCccccccCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAV-------NDAFVMEAWCRKNNAEGKIRFLADPNLE------FTKKLGVEHEIPVLG 71 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~-------dd~f~~~aW~~~~~~~~~i~~lsD~~~~------~~k~~G~~~~~~~~G 71 (109)
+|.+.+.+++|+++|+ .|++||+ |++...++|.+..++. ++++.|.++. +++.||+. +
T Consensus 50 ~~~l~~l~~~~~~~~v-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~v~------~ 120 (160)
T 3lor_A 50 VPQAQKIHRMIDESQV-QVIGLHSVFEHHDVMTPEALKVFIDEFGIK--FPVAVDMPREGQRIPSTMKKYRLE------G 120 (160)
T ss_dssp HHHHHHHHHHSCTTTE-EEEEEECCCSCGGGSCHHHHHHHHHHTTCC--SCEEEECCCTTCSSCHHHHHTTCC------S
T ss_pred hHHHHHHHHHhCcCCc-EEEEEeccccccccCCHHHHHHHHHHcCCC--CcEEECCccccchhhhHHHhcccC------c
Confidence 8899999999998899 7999997 7999999999999986 8999999998 99999874 2
Q ss_pred ceeEeEEEEEEe-CCeEEEEEEec
Q psy5401 72 GWRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 72 g~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
-..+|+|| +|+|++.....
T Consensus 121 ----~P~~~lid~~G~i~~~~~g~ 140 (160)
T 3lor_A 121 ----TPSIILADRKGRIRQVQFGQ 140 (160)
T ss_dssp ----SSEEEEECTTSBEEEEEESC
T ss_pred ----cceEEEECCCCcEEEEecCc
Confidence 13568998 99999987653
No 52
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.71 E-value=9.1e-08 Score=63.40 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=67.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.+++|++.|+ .|+.|+.| ++...++|.+..+.. ++++.|+++++++.||+.. -..+++
T Consensus 45 ~~~~~l~~l~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~----------~P~~~l 111 (152)
T 3gl3_A 45 QSFPWMNQMQAKYKAKGF-QVVAVNLDAKTGDAMKFLAQVPAE--FTVAFDPKGQTPRLYGVKG----------MPTSFL 111 (152)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCSSHHHHHHHHHHSCCC--SEEEECTTCHHHHHTTCCS----------SSEEEE
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEEECCCCHHHHHHHHHHcCCC--CceeECCcchhHHHcCCCC----------CCeEEE
Confidence 357889999999999999 79999999 788899999999985 9999999999999999842 135689
Q ss_pred Ee-CCeEEEEEEec
Q psy5401 82 VD-DGKITQLNIEP 94 (109)
Q Consensus 82 Vd-dG~V~~~~v~~ 94 (109)
|| +|+|++.....
T Consensus 112 id~~G~i~~~~~g~ 125 (152)
T 3gl3_A 112 IDRNGKVLLQHVGF 125 (152)
T ss_dssp ECTTSBEEEEEESC
T ss_pred ECCCCCEEEEEccC
Confidence 98 99999988764
No 53
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.70 E-value=4.8e-08 Score=65.31 Aligned_cols=77 Identities=9% Similarity=0.168 Sum_probs=65.9
Q ss_pred c-chhHHHcHHHHHhCCCCEEEEEec-------CCHHHHHHHHHhcCCCCceEEeecCCc-----hHhHhhCCccccccC
Q psy5401 4 H-LPGYLAKEKDLKAKGIHEIFCIAV-------NDAFVMEAWCRKNNAEGKIRFLADPNL-----EFTKKLGVEHEIPVL 70 (109)
Q Consensus 4 h-lp~f~~~~~~f~~~Gvd~V~~iS~-------dd~f~~~aW~~~~~~~~~i~~lsD~~~-----~~~k~~G~~~~~~~~ 70 (109)
+ +|.+.+.+++|++.|+ .|++||+ |++..+++|.+.+++. ++++.|.++ ++++.||+.
T Consensus 46 ~~~~~l~~l~~~~~~~~v-~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~~v~------ 116 (158)
T 3eyt_A 46 HGIPLAQKVRAAFPEDKV-AVLGLHTVFEHHEAMTPISLKAFLHEYRIK--FPVGVDQPGDGAMPRTMAAYQMR------ 116 (158)
T ss_dssp THHHHHHHHHHHSCTTTE-EEEEEECCCSCGGGSCHHHHHHHHHHTTCC--SCEEEECCCSSSSCHHHHHTTCC------
T ss_pred hhhHHHHHHHHHhCcCCE-EEEEEEecccccccCCHHHHHHHHHHcCCC--ceEEEcCccchhhHHHHHHcCCC------
Confidence 5 7999999999988899 7999995 6999999999999986 899999988 799999874
Q ss_pred CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 71 GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 71 Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
+ -..+|||| +|+|++....
T Consensus 117 ~----~P~~~lid~~G~i~~~~~g 136 (158)
T 3eyt_A 117 G----TPSLLLIDKAGDLRAHHFG 136 (158)
T ss_dssp S----SSEEEEECTTSEEEEEEES
T ss_pred C----CCEEEEECCCCCEEEEEeC
Confidence 2 13578998 9999988764
No 54
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.69 E-value=3.7e-08 Score=65.73 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=65.2
Q ss_pred CcchhHHHcHHHH-HhCCCCEEEEEecCCH-HHHHHHHHhcCCCCceEEeecC---CchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDL-KAKGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADP---NLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f-~~~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~~i~~lsD~---~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.+.+.+++| +++|+ +|++||+|+. ...++|.+.+++. ++++.|+ ++++++.||+. + -.
T Consensus 52 ~~~~~l~~l~~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~------~----~P 118 (150)
T 3fw2_A 52 QSNSELREIYKKYKKNKYI-GMLGISLDVDKQQWKDAIKRDTLD--WEQVCDFGGLNSEVAKQYSIY------K----IP 118 (150)
T ss_dssp HHHHHHHHHHHHHTTCSSE-EEEEEECCSCHHHHHHHHHHTTCC--SEEECCSCGGGCHHHHHTTCC------S----SS
T ss_pred HHHHHHHHHHHHhccCCCe-EEEEEEcCCCHHHHHHHHHHhCCC--ceEEEcCcccchHHHHHcCCC------c----cC
Confidence 4688999999999 88899 7999999965 7888999999985 9999998 77999999974 1 13
Q ss_pred EEEEEe-CCeEEEEEE
Q psy5401 78 YSMVVD-DGKITQLNI 92 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v 92 (109)
.+++|| +|+|++..+
T Consensus 119 ~~~lid~~G~i~~~~~ 134 (150)
T 3fw2_A 119 ANILLSSDGKILAKNL 134 (150)
T ss_dssp EEEEECTTSBEEEESC
T ss_pred eEEEECCCCEEEEccC
Confidence 679998 999998864
No 55
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.68 E-value=1.7e-08 Score=69.56 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=68.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCH--HHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDA--FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~--f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
.++|.+.+.+++|++.|+ +|++||.|.. ..+++|.+.+++.. +++++|+++++.+.||+.... .....+|
T Consensus 77 ~~~~~l~~l~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~------~~~P~~~ 148 (186)
T 1jfu_A 77 KEMPALDELQGKLSGPNF-EVVAINIDTRDPEKPKTFLKEANLTR-LGYFNDQKAKVFQDLKAIGRA------LGMPTSV 148 (186)
T ss_dssp HHHHHHHHHHHHHCBTTE-EEEEEECCCSCTTHHHHHHHHTTCCT-TCCEECTTCHHHHHHHTTTCC------SSSSEEE
T ss_pred HHHHHHHHHHHHhccCCc-EEEEEECCCCCHHHHHHHHHHcCCCC-CceEECCcchHHHHhcccccc------CCCCEEE
Confidence 467889999999987899 7999999864 78899999999853 889999999999999986321 1235789
Q ss_pred EEe-CCeEEEEEEec
Q psy5401 81 VVD-DGKITQLNIEP 94 (109)
Q Consensus 81 iVd-dG~V~~~~v~~ 94 (109)
||| +|+|++.....
T Consensus 149 lid~~G~i~~~~~g~ 163 (186)
T 1jfu_A 149 LVDPQGCEIATIAGP 163 (186)
T ss_dssp EECTTSBEEEEEESC
T ss_pred EECCCCCEEEEEecC
Confidence 998 99999887643
No 56
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.67 E-value=6.2e-08 Score=66.73 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=66.9
Q ss_pred CcchhHHHcHHHHHhCCCC-----EEEEEecCC--HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeE
Q psy5401 3 THLPGYLAKEKDLKAKGIH-----EIFCIAVND--AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRS 75 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd-----~V~~iS~dd--~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~ 75 (109)
.++|.+.+.+++|+++|+. +|++|+.|+ +...++|.+.+++. ++++.|+++.+.+.||...- +.
T Consensus 76 ~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v-------~~ 146 (183)
T 3lwa_A 76 SESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLD--YPSIYDPPFMTAASLGGVPA-------SV 146 (183)
T ss_dssp HHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCC--SCEEECTTCGGGGGTTTCCT-------TC
T ss_pred HHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCC--ccEEECCcchHHHHhccCCC-------CC
Confidence 4678999999999998881 499999998 99999999999986 99999999999999984211 12
Q ss_pred eEEEEEEe-CCeEEEEEEe
Q psy5401 76 KRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 76 ~R~~fiVd-dG~V~~~~v~ 93 (109)
...+|||| +|+|++....
T Consensus 147 ~P~~~lid~~G~i~~~~~g 165 (183)
T 3lwa_A 147 IPTTIVLDKQHRPAAVFLR 165 (183)
T ss_dssp CSEEEEECTTSCEEEEECS
T ss_pred CCeEEEECCCCcEEEEEcC
Confidence 34679998 9999987654
No 57
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.64 E-value=1.1e-07 Score=63.22 Aligned_cols=79 Identities=19% Similarity=0.422 Sum_probs=67.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCC--HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVND--AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSM 80 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd--~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~f 80 (109)
.++|.+.+.++++.+.++ .|++|+.|. +..+++|.+..+.. +++++|.++.+++.||+. + ...+|
T Consensus 45 ~~~~~l~~~~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~------~----~P~~~ 111 (154)
T 3kcm_A 45 EEIPSMMRLNAAMAGKPF-RMLCVSIDEGGKVAVEEFFRKTGFT--LPVLLDADKRVGKLYGTT------G----VPETF 111 (154)
T ss_dssp HHHHHHHHHHHHTTTSSE-EEEEEECCTTHHHHHHHHHHHHCCC--CCEEECTTCHHHHHHTCC------S----BCEEE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEEcCCcchHHHHHHHHHcCCC--eeEEecCchHHHHHhCCC------C----CCeEE
Confidence 357888889999988889 799999998 89999999999985 899999999999999974 2 13578
Q ss_pred EEe-CCeEEEEEEec
Q psy5401 81 VVD-DGKITQLNIEP 94 (109)
Q Consensus 81 iVd-dG~V~~~~v~~ 94 (109)
||| +|+|++.....
T Consensus 112 lid~~G~i~~~~~g~ 126 (154)
T 3kcm_A 112 VIDRHGVILKKVVGA 126 (154)
T ss_dssp EECTTSBEEEEEESC
T ss_pred EECCCCcEEEEEcCC
Confidence 998 99999887654
No 58
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.64 E-value=9e-08 Score=66.16 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=64.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCcee
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWR 74 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r 74 (109)
.++|.+.+.+++|+++ + +|++||. |++..+++|.+.+++. ++++.|.++++++.||+..
T Consensus 50 ~~~~~l~~l~~~~~~~-~-~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~--------- 116 (188)
T 2cvb_A 50 GSIGELVALAERYRGK-V-AFVGINANDYEKYPEDAPEKMAAFAEEHGIF--FPYLLDETQEVAKAYRALR--------- 116 (188)
T ss_dssp TTHHHHHHHHHHTTTT-E-EEEEEECCCTTTCGGGSHHHHHHHHHHHTCC--SCEEECSSSHHHHHTTCCE---------
T ss_pred HHHHHHHHHHHHhhcC-e-EEEEEEcCccccccccCHHHHHHHHHHhCCC--ceEEECCcchHHHHcCCCC---------
Confidence 4688999999999887 8 7999999 6899999999999985 8999999999999998641
Q ss_pred EeEEEEEEe-CCeEEEEE
Q psy5401 75 SKRYSMVVD-DGKITQLN 91 (109)
Q Consensus 75 ~~R~~fiVd-dG~V~~~~ 91 (109)
...+|||| +|+|++..
T Consensus 117 -~P~~~lid~~G~i~~~g 133 (188)
T 2cvb_A 117 -TPEVFLFDERRLLRYHG 133 (188)
T ss_dssp -ESEEEEECTTCBEEEEE
T ss_pred -CCeEEEECCCCcEEEEE
Confidence 24678998 99999883
No 59
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=98.62 E-value=1.5e-07 Score=63.07 Aligned_cols=88 Identities=8% Similarity=0.080 Sum_probs=67.2
Q ss_pred CcchhHHHcHHHHHh----CCCCEEEEEecCC----HHHHHHHHHhcCCCCceEEe---ecCCchHhHhhCCcccc-c--
Q psy5401 3 THLPGYLAKEKDLKA----KGIHEIFCIAVND----AFVMEAWCRKNNAEGKIRFL---ADPNLEFTKKLGVEHEI-P-- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~----~Gvd~V~~iS~dd----~f~~~aW~~~~~~~~~i~~l---sD~~~~~~k~~G~~~~~-~-- 68 (109)
.++|.+.+.+++|++ .++ +|++||.|. +..+++|.+..+.. +++| .|..++++++||+.... .
T Consensus 41 ~~~~~l~~l~~~~~~~~~~~~~-~vv~vs~d~~~d~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~~~v~~~p~~~~ 117 (164)
T 2ggt_A 41 EELEKMIQVVDEIDSITTLPDL-TPLFISIDPERDTKEAIANYVKEFSPK--LVGLTGTREEVDQVARAYRVYYSPGPKD 117 (164)
T ss_dssp HHHHHHHHHHHHHHHSSSSCCE-EEEEEESCTTTCCHHHHHHHHHTTCSS--CEEEECCHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhhccCCCcE-EEEEEEeCCCCCCHHHHHHHHHHcCCC--eEEEeCCHHHHHHHHHhcCeEEEecCCC
Confidence 467889999999987 488 799999985 89999999999875 8888 46778899999985321 0
Q ss_pred cCC--ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 VLG--GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~~G--g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..+ .....+.+|||| +|+|++....
T Consensus 118 ~~~~~~~~~~~~~~lid~~G~i~~~~~g 145 (164)
T 2ggt_A 118 EDEDYIVDHTIIMYLIGPDGEFLDYFGQ 145 (164)
T ss_dssp TTSCEEEEECCEEEEECTTSCEEEEEET
T ss_pred CCCCeeEeccceEEEECCCCeEEEEeCC
Confidence 011 012334789999 9999998754
No 60
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=98.59 E-value=1.8e-07 Score=64.56 Aligned_cols=90 Identities=8% Similarity=0.078 Sum_probs=67.2
Q ss_pred CcchhHHHcHHHHHh--CCCCEEEEEecC---CHHHHHHHHHhcCCCCc-eEEe--ec--CCchHhHhhCCccccccCCc
Q psy5401 3 THLPGYLAKEKDLKA--KGIHEIFCIAVN---DAFVMEAWCRKNNAEGK-IRFL--AD--PNLEFTKKLGVEHEIPVLGG 72 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~--~Gvd~V~~iS~d---d~f~~~aW~~~~~~~~~-i~~l--sD--~~~~~~k~~G~~~~~~~~Gg 72 (109)
.++|.+.+.+++|++ .++ +|++||.| ++..+++|.+..+.... .+++ .| ...+++++||+..... .++
T Consensus 46 ~~~~~l~~~~~~~~~~~~~~-~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~-~~~ 123 (170)
T 3me7_A 46 LITKSLLKVIPKLGTPGKDF-WVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTA-GND 123 (170)
T ss_dssp HHHHHHHTTHHHHCCBTTTB-EEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEE-TTE
T ss_pred HHHHHHHHHHHHhhhcCCce-EEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecC-CCc
Confidence 367889999999975 458 79999986 89999999999997532 4443 33 5679999999865421 123
Q ss_pred eeEeEEEEEEe-CCeEEEEEEec
Q psy5401 73 WRSKRYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 73 ~r~~R~~fiVd-dG~V~~~~v~~ 94 (109)
....+.+|||| +|+|++.....
T Consensus 124 ~~~~~~~~lID~~G~i~~~~~g~ 146 (170)
T 3me7_A 124 FIHPNVVVVLSPELQIKDYIYGV 146 (170)
T ss_dssp EECCCEEEEECTTSBEEEEEESS
T ss_pred cccCceEEEECCCCeEEEEEeCC
Confidence 34457889999 99999887543
No 61
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.58 E-value=2.5e-07 Score=62.47 Aligned_cols=88 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred CcchhHHHcHHHHHh----CCCCEEEEEecC----CHHHHHHHHHhcCCCCceEEeecCC---chHhHhhCCcccc-c-c
Q psy5401 3 THLPGYLAKEKDLKA----KGIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLADPN---LEFTKKLGVEHEI-P-V 69 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~----~Gvd~V~~iS~d----d~f~~~aW~~~~~~~~~i~~lsD~~---~~~~k~~G~~~~~-~-~ 69 (109)
.++|.+.+.+++|++ .++ +|++||+| ++..+++|.+..+.. +++|+|.. ++++++||+.... . .
T Consensus 44 ~~~~~l~~l~~~~~~~~~~~~v-~vv~is~d~~~d~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~v~~~p~~~~ 120 (171)
T 2rli_A 44 DELEKLVQVVRQLEAEPGLPPV-QPVFITVDPERDDVEAMARYVQDFHPR--LLGLTGSTKQVAQASHSYRVYYNAGPKD 120 (171)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCE-EEEEEESCSTTCCHHHHHHHHHTTCTT--CCEEECCHHHHHHHHHHSCCCCEECCCC
T ss_pred HHHHHHHHHHHHHhhccCCCce-EEEEEEECCCCCCHHHHHHHHHHcCCC--eEEEeCCHHHHHHHHHHhCeEEEecCCC
Confidence 467889999999986 588 79999997 699999999999875 88888743 5899999986321 0 0
Q ss_pred C-C--ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 70 L-G--GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 70 ~-G--g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
. + .....+.+|||| +|+|++....
T Consensus 121 ~~~~~~~~~~~~~~lid~~G~i~~~~~g 148 (171)
T 2rli_A 121 EDQDYIVDHSIAIYLLNPDGLFTDYYGR 148 (171)
T ss_dssp SSCCCCEECCCEEEEECTTSCEEEEEES
T ss_pred CCCCeEEeccceEEEECCCCeEEEEECC
Confidence 0 1 123345789999 9999998654
No 62
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.58 E-value=1.1e-07 Score=63.45 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=64.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEeecC---CchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADP---NLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~lsD~---~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.+.+.+++|++.|+ .|+.|+.| ++...++|.+..++. +++++|+ +.++++.||+. + -..
T Consensus 46 ~~~~~l~~l~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~------~----~P~ 112 (152)
T 2lrn_A 46 KETPYLLKTYNAFKDKGF-TIYGVSTDRREEDWKKAIEEDKSY--WNQVLLQKDDVKDVLESYCIV------G----FPH 112 (152)
T ss_dssp HHHHHHHHHHHHHTTTTE-EEEEEECCSCHHHHHHHHHHHTCC--SEEEEECHHHHHHHHHHTTCC------S----SCE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEEccCCHHHHHHHHHHhCCC--CeEEecccchhHHHHHHhCCC------c----CCe
Confidence 357889999999998899 79999998 577888888888885 9999999 89999999874 1 146
Q ss_pred EEEEe-CCeEEEEEE
Q psy5401 79 SMVVD-DGKITQLNI 92 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v 92 (109)
++++| +|+|++..+
T Consensus 113 ~~lid~~G~i~~~~~ 127 (152)
T 2lrn_A 113 IILVDPEGKIVAKEL 127 (152)
T ss_dssp EEEECTTSEEEEECC
T ss_pred EEEECCCCeEEEeeC
Confidence 78998 999998864
No 63
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.55 E-value=2.4e-07 Score=60.64 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=66.7
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEeecCCch--HhHhhCCccccccCCceeEeEE
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPNLE--FTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~lsD~~~~--~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
..++|.+.+.++++++.|+ .|++|+.| ++...++|.+..++.. ++++.|+++. +++.||+.. ...
T Consensus 47 ~~~~~~l~~l~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~i~~----------~P~ 114 (148)
T 3hcz_A 47 QQETPKLYDWWLKNRAKGI-QVYAANIERKDEEWLKFIRSKKIGG-WLNVRDSKNHTDFKITYDIYA----------TPV 114 (148)
T ss_dssp CSHHHHHHHHHHHHGGGTE-EEEEEECCSSSHHHHHHHHHHTCTT-SEEEECTTCCCCHHHHHCCCS----------SCE
T ss_pred HHHHHHHHHHHHHhccCCE-EEEEEEecCCHHHHHHHHHHcCCCC-ceEEeccccchhHHHhcCcCC----------CCE
Confidence 3578899999999998899 79999999 7789999999999864 8999999998 999999742 136
Q ss_pred EEEEe-CCeEEEEEE
Q psy5401 79 SMVVD-DGKITQLNI 92 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v 92 (109)
++++| +|+|++...
T Consensus 115 ~~lid~~G~i~~~~~ 129 (148)
T 3hcz_A 115 LYVLDKNKVIIAKRI 129 (148)
T ss_dssp EEEECTTCBEEEESC
T ss_pred EEEECCCCcEEEecC
Confidence 78898 999998754
No 64
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.55 E-value=2.1e-07 Score=61.07 Aligned_cols=73 Identities=3% Similarity=-0.084 Sum_probs=60.1
Q ss_pred cchhHHH---cHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEeecCCchHhH--hhCCccccccCCceeEeE
Q psy5401 4 HLPGYLA---KEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPNLEFTK--KLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 4 hlp~f~~---~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k--~~G~~~~~~~~Gg~r~~R 77 (109)
++|.+.+ .++++++.|+ .|++||+| ++...++|.+.+++. ++++.|.++.+++ .||+. + -.
T Consensus 45 ~~~~l~~~~~l~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~------~----~P 111 (142)
T 3ewl_A 45 FEKLFAEIPAFVEMVENGTL-RVLAIYPDENREEWATKAVYMPQG--WIVGWNKAGDIRTRQLYDIR------A----TP 111 (142)
T ss_dssp HHHHHHTCHHHHHHHHHTSE-EEEEEECSSCHHHHHHHHTTSCTT--CEEEECTTCHHHHTTCSCCC------S----SS
T ss_pred HHHHHHHhHHHHHHhccCCe-EEEEEEecCCHHHHHHHHHHcCCC--cceeeCCccchhhHHHcCCC------C----CC
Confidence 4566666 7888888999 79999999 788889999988885 9999999999987 78764 1 13
Q ss_pred EEEEEe-CCeEEE
Q psy5401 78 YSMVVD-DGKITQ 89 (109)
Q Consensus 78 ~~fiVd-dG~V~~ 89 (109)
.+++|| +|+|++
T Consensus 112 ~~~lid~~G~i~~ 124 (142)
T 3ewl_A 112 TIYLLDGRKRVIL 124 (142)
T ss_dssp EEEEECTTCBEEE
T ss_pred eEEEECCCCCEEe
Confidence 678998 999987
No 65
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.55 E-value=2.8e-07 Score=61.14 Aligned_cols=78 Identities=14% Similarity=0.328 Sum_probs=65.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.++++.+.|+ .|+.|+.| ++...++|.+..++. ++++.|.++++++.||+. + -..++|
T Consensus 43 ~~~~~l~~~~~~~~~~~v-~vv~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~------~----~P~~~l 109 (151)
T 2f9s_A 43 KEFPYMANQYKHFKSQGV-EIVAVNVGESKIAVHNFMKSYGVN--FPVVLDTDRQVLDAYDVS------P----LPTTFL 109 (151)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEEESCCHHHHHHHHHHHTCC--SCEEEETTSHHHHHTTCC------S----SCEEEE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEECCCCHHHHHHHHHHcCCC--ceEEECCchHHHHhcCCC------C----CCeEEE
Confidence 357888888999988899 79999996 688999999999985 999999999999999874 2 136789
Q ss_pred Ee-CCeEEEEEEe
Q psy5401 82 VD-DGKITQLNIE 93 (109)
Q Consensus 82 Vd-dG~V~~~~v~ 93 (109)
+| +|+|++....
T Consensus 110 id~~G~i~~~~~G 122 (151)
T 2f9s_A 110 INPEGKVVKVVTG 122 (151)
T ss_dssp ECTTSEEEEEEES
T ss_pred ECCCCcEEEEEeC
Confidence 98 9999987663
No 66
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=98.53 E-value=3.9e-08 Score=69.57 Aligned_cols=88 Identities=16% Similarity=0.132 Sum_probs=63.7
Q ss_pred CcchhHHHcHHHHHhC---CCCEEEEEecC----CHHHHHHHHHhcCCCCceEEeec---CCchHhHhhCCccccc-c--
Q psy5401 3 THLPGYLAKEKDLKAK---GIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLAD---PNLEFTKKLGVEHEIP-V-- 69 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~---Gvd~V~~iS~d----d~f~~~aW~~~~~~~~~i~~lsD---~~~~~~k~~G~~~~~~-~-- 69 (109)
.++|.+.+.+++|.+. ++ +|++||+| ++..+++|.+..+.. +++|++ ..++++++||+....+ .
T Consensus 59 ~~~~~l~~l~~~~~~~~~~~v-~vv~Is~D~~~d~~~~~~~~~~~~~~~--~~~l~~~~d~~~~~~~~~gv~~~~p~~~~ 135 (200)
T 2b7k_A 59 DELDKLGLWLNTLSSKYGITL-QPLFITCDPARDSPAVLKEYLSDFHPS--ILGLTGTFDEVKNACKKYRVYFSTPPNVK 135 (200)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC-EEEEEESCTTTCCHHHHHHHHTTSCTT--CEEEECCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHhhCCce-EEEEEECCCCCCCHHHHHHHHHHcCCC--ceEEeCCHHHHHHHHHHcCcEEeeccccC
Confidence 3678899999999853 88 79999998 799999999998874 777764 5678999999863211 0
Q ss_pred CCc---eeEeEEEEEEe-CCeEEEEEEe
Q psy5401 70 LGG---WRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 70 ~Gg---~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
.|. ....+.+|||| +|+|++....
T Consensus 136 ~~~~~~~~~~~~~~liD~~G~i~~~~~g 163 (200)
T 2b7k_A 136 PGQDYLVDHSIFFYLMDPEGQFVDALGR 163 (200)
T ss_dssp -----CTTTCCCEEEECTTSCEEEEECT
T ss_pred CCCCceeeecceEEEECCCCcEEEEeCC
Confidence 010 01225789999 9999988653
No 67
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=9.2e-08 Score=63.83 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=63.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCC---chHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPN---LEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~---~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+.+++|++.|+ .|++||+|++..+++|.+..++. ++++.|.. .++++.||.... + -..+
T Consensus 41 ~~~~~l~~l~~~~~~~~v-~vv~v~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~----~----~P~~ 109 (151)
T 3raz_A 41 KEMPAMSKWYKAQKKGSV-DMVGIALDTSDNIGNFLKQTPVS--YPIWRYTGANSRNFMKTYGNTVG----V----LPFT 109 (151)
T ss_dssp HHHHHHHHHHHTSCTTTE-EEEEEESSCHHHHHHHHHHSCCS--SCEEEECCSCHHHHHHTTTCCSC----C----SSEE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEECCChHHHHHHHHHcCCC--CceEecCccchHHHHHHhCCccC----C----CCEE
Confidence 357888888999988899 79999999999999999999986 88888763 467888884221 1 2467
Q ss_pred EEEe-CCeEEEEEEe
Q psy5401 80 MVVD-DGKITQLNIE 93 (109)
Q Consensus 80 fiVd-dG~V~~~~v~ 93 (109)
|||| +|+|++....
T Consensus 110 ~lid~~G~i~~~~~g 124 (151)
T 3raz_A 110 VVEAPKCGYRQTITG 124 (151)
T ss_dssp EEEETTTTEEEECCS
T ss_pred EEECCCCcEEEEECC
Confidence 9998 9999887543
No 68
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=98.49 E-value=1.4e-07 Score=65.20 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=64.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHhcCCCCceEEee--cCCchHhH-hhCCccccc---
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRKNNAEGKIRFLA--DPNLEFTK-KLGVEHEIP--- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~~~~~~~i~~ls--D~~~~~~k-~~G~~~~~~--- 68 (109)
.++|.+.+.+++|++.|+ +|++||+| ++..+++|.+..++. +++++ |.++..++ .|+......
T Consensus 64 ~~~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~~~ 140 (183)
T 2obi_A 64 VNYTQLVDLHARYAECGL-RILAFPCNQFGKQEPGSNEEIKEFAAGYNVK--FDMFSKICVNGDDAHPLWKWMKIQPKGK 140 (183)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCCSTTCCCSCHHHHHHHHHTTTCC--SEEBCCCCCSSTTSCHHHHHHHTSTTTC
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEECCCCCCCCCCCHHHHHHHHHHcCCC--ceEEeeeccCCcchhHHHHHhhccCCCC
Confidence 468999999999999899 79999986 789999999999885 89997 88887664 453321110
Q ss_pred -cCC-ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 -VLG-GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 -~~G-g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..| ..+....+|||| +|+|++....
T Consensus 141 g~~~~~i~~~P~~~lid~~G~i~~~~~g 168 (183)
T 2obi_A 141 GILGNAIKWNFTKFLIDKNGCVVKRYGP 168 (183)
T ss_dssp CSSSSSCCSTTCEEEECTTSCEEEEECT
T ss_pred CcccccccccceEEEECCCCCEEEEeCC
Confidence 011 112223679999 9999998654
No 69
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.48 E-value=4.4e-07 Score=59.06 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=64.6
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecC----CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVN----DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~d----d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
++|.+.+.++++++.++ .++.|+.| ++..+++|.+.+++. ++++.|.++++++.||+. .-..+
T Consensus 52 ~~~~l~~~~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~----------~~P~~ 118 (145)
T 3erw_A 52 ELPQFQSFYDAHPSDSV-KLVTVNLVNSEQNQQVVEDFIKANKLT--FPIVLDSKGELMKEYHII----------TIPTS 118 (145)
T ss_dssp HHHHHHHHHHHCCCSSE-EEEEEECGGGSSCHHHHHHHHHHTTCC--SCEEECSSSHHHHHTTCC----------EESEE
T ss_pred HHHHHHHHHHHcCCCCE-EEEEEEccCCcCCHHHHHHHHHHcCCc--eeEEEcCchhHHHhcCcC----------ccCeE
Confidence 56778888888876789 79999996 899999999999985 899999999999999874 12467
Q ss_pred EEEe-CCeEEEEEEe
Q psy5401 80 MVVD-DGKITQLNIE 93 (109)
Q Consensus 80 fiVd-dG~V~~~~v~ 93 (109)
+++| +|+|++....
T Consensus 119 ~lid~~G~i~~~~~g 133 (145)
T 3erw_A 119 FLLNEKGEIEKTKIG 133 (145)
T ss_dssp EEECTTCCEEEEEES
T ss_pred EEEcCCCcEEEEEcC
Confidence 8998 9999887654
No 70
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=68.74 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=61.3
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHH------hcCCCCceEEeecC--CchHh-HhhCCccc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCR------KNNAEGKIRFLADP--NLEFT-KKLGVEHE 66 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~------~~~~~~~i~~lsD~--~~~~~-k~~G~~~~ 66 (109)
++|.+.+.+++|++.|+ +|++||.| ++..+++|++ ..++. |++++|. ++..+ ..|+....
T Consensus 73 e~p~L~~l~~~~~~~g~-~Vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~--fpll~d~d~~g~~~~~~~~~l~~ 149 (215)
T 2i3y_A 73 QYPELNALQEELKPYGL-VVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPS--FQLFEKGDVNGEKEQKVFSFLKH 149 (215)
T ss_dssp GHHHHHHHHHHHGGGTE-EEEEEECCCSTTCCCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCSSSTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCe-EEEEEEccccCcCCCCCHHHHHHHHHhccchhccCcc--ceeEeeeccCCcccchHHHHHHh
Confidence 78999999999999999 79999965 6788999998 77875 9999864 45432 22332111
Q ss_pred c-c----cC-------------CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 67 I-P----VL-------------GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 67 ~-~----~~-------------Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
. + .. +.++..|.+|||| +|+|++.+..
T Consensus 150 ~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g 195 (215)
T 2i3y_A 150 SCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSH 195 (215)
T ss_dssp HSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECT
T ss_pred hCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCC
Confidence 0 0 00 0122236789999 9999988753
No 71
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.48 E-value=7.8e-08 Score=63.62 Aligned_cols=77 Identities=10% Similarity=0.191 Sum_probs=62.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC-CHHHHHHHHHhcCCCCce-EEeecCC---chHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN-DAFVMEAWCRKNNAEGKI-RFLADPN---LEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i-~~lsD~~---~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.+.+.+++|++.|+ +|++||.| ++...++|.+..++. + ++++|.+ .++++.||+.. -.
T Consensus 49 ~~~~~l~~l~~~~~~~~~-~vv~vs~d~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~v~~----------~P 115 (143)
T 4fo5_A 49 ARNVQLANEVNKFGPDKI-AMCSISMDEKESIFTETVKIDKLD--LSTQFHEGLGKESELYKKYDLRK----------GF 115 (143)
T ss_dssp HHHHHHHHHHTTSCTTTE-EEEEEECCSCHHHHHHHHHHHTCC--GGGEEECTTGGGSHHHHHTTGGG----------CC
T ss_pred HHHHHHHHHHHHhCcCCE-EEEEEEccCCHHHHHHHHHHhCCC--CceeeecccccchHHHHHcCCCC----------CC
Confidence 467889999999988899 79999999 667888888888885 7 7889984 68999998742 13
Q ss_pred EEEEEe-CCeEEEEEE
Q psy5401 78 YSMVVD-DGKITQLNI 92 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v 92 (109)
.+|||| +|+|++..+
T Consensus 116 ~~~lid~~G~i~~~~~ 131 (143)
T 4fo5_A 116 KNFLINDEGVIIAANV 131 (143)
T ss_dssp CEEEECTTSBEEEESC
T ss_pred cEEEECCCCEEEEccC
Confidence 568999 999998754
No 72
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=98.47 E-value=1.4e-07 Score=67.91 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=61.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHH------hcCCCCceEEeecC--CchHh-HhhCCcc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCR------KNNAEGKIRFLADP--NLEFT-KKLGVEH 65 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~------~~~~~~~i~~lsD~--~~~~~-k~~G~~~ 65 (109)
.++|.+.+.+++|++.|+ +|++||+| ++-.+++|++ .+++. +++++|. +|..+ ..|+...
T Consensus 54 ~e~p~L~~l~~~~~~~g~-~vlgvs~d~f~~~e~~~~~~i~~f~~~~~~~~~~~~~--fp~l~d~d~~g~~~~~~~~~l~ 130 (207)
T 2r37_A 54 GQYIELNALQEELAPFGL-VILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPN--FQLFEKGDVNGEKEQKFYTFLK 130 (207)
T ss_dssp THHHHHHHHHHHHGGGTE-EEEEEECCCBTTCCCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCSSSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCE-EEEEEECcccCcCCCCCHHHHHHHHHhcchhhccCcc--ceeeeEeccCCcccchHHHHHH
Confidence 478999999999999999 79999965 6789999999 77875 9999864 45532 2233211
Q ss_pred cc-c----cC-------------CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 66 EI-P----VL-------------GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 66 ~~-~----~~-------------Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
.. + .. +.++..|.+|||| +|+|++.+..
T Consensus 131 ~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g 177 (207)
T 2r37_A 131 NSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHH 177 (207)
T ss_dssp HHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECT
T ss_pred hhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECC
Confidence 10 0 00 0112225789999 9999988753
No 73
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=98.47 E-value=2.1e-07 Score=64.73 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=63.9
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHhcCCCCceEEee--cCCchHhH-hhCCccccc---
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRKNNAEGKIRFLA--DPNLEFTK-KLGVEHEIP--- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~~~~~~~i~~ls--D~~~~~~k-~~G~~~~~~--- 68 (109)
.++|.+.+.+++|+++|+ +|++||.| ++..+++|++..++. +++++ |.++..++ .|+......
T Consensus 66 ~~~~~l~~l~~~~~~~~v-~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~~~ 142 (185)
T 2gs3_A 66 VNYTQLVDLHARYAECGL-RILAFPCNQFGKQEPGSNEEIKEFAAGYNVK--FDMFSKICVNGDDAHPLWKWMKIQPKGK 142 (185)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCTTTTCCCSCHHHHHHHHHHTTCC--SEEBCCCBSSSTTBCHHHHHHTTSGGGC
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEEECcccCCCCCCCHHHHHHHHHHcCCC--CeeeeeeccCChhhhHHHHHHHhhcccc
Confidence 478999999999999999 79999986 578899999999986 99997 67777664 453221110
Q ss_pred -cCC-ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 -VLG-GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 -~~G-g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..| ..+..-.+|||| +|+|++....
T Consensus 143 g~~~~~i~~~P~~~lid~~G~i~~~~~g 170 (185)
T 2gs3_A 143 GILGNAIKWNFTKFLIDKNGCVVKRYGP 170 (185)
T ss_dssp CSSSSSCCSSCCEEEECTTSCEEEEECT
T ss_pred cccCCcccccceEEEECCCCCEEEeeCC
Confidence 011 011123789999 9999998654
No 74
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.44 E-value=5.1e-07 Score=59.78 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=65.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEe--cCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIA--VNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS--~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
++|.+.+.++++++.|+ .|++|+ .|++...++|.+.+++. ++++.|.+.++++.||+.. ...++|
T Consensus 46 ~~~~l~~l~~~~~~~~~-~vv~v~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~~----------~P~~~l 112 (153)
T 2l5o_A 46 EMPKIIKTANDYKNKNF-QVLAVAQPIDPIESVRQYVKDYGLP--FTVMYDADKAVGQAFGTQV----------YPTSVL 112 (153)
T ss_dssp HHHHHHHHHHHGGGTTE-EEEEEECTTSCHHHHHHHHHHTTCC--SEEEECSSCHHHHHHTCCS----------SSEEEE
T ss_pred HHHHHHHHHHHhccCCe-EEEEEecCCCCHHHHHHHHHHcCCC--ceEEcCchHHHHHHcCCCc----------cCeEEE
Confidence 56788888899988899 799999 68999999999999986 8999999999999999742 125688
Q ss_pred Ee-CCeEEEEEEe
Q psy5401 82 VD-DGKITQLNIE 93 (109)
Q Consensus 82 Vd-dG~V~~~~v~ 93 (109)
+| +|+|++....
T Consensus 113 id~~G~i~~~~~g 125 (153)
T 2l5o_A 113 IGKKGEILKTYVG 125 (153)
T ss_dssp ECSSSCCCEEEES
T ss_pred ECCCCcEEEEEcC
Confidence 88 9999877654
No 75
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.44 E-value=2.2e-06 Score=59.12 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=57.6
Q ss_pred cHHHHHhCCCCEEEEEe-cCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEE
Q psy5401 11 KEKDLKAKGIHEIFCIA-VNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKIT 88 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS-~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~ 88 (109)
.+.++.+.|+ .|++|| .|++...++|.+..++.. ..+++|.++++++.||+.. .+.+|||| +|+|+
T Consensus 79 ~l~~l~~~~v-~vv~vs~~d~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~v~~----------~P~~~lid~~G~i~ 146 (176)
T 3kh7_A 79 ELTRLAEQGV-VIYGINYKDDNAAAIKWLNELHNPY-LLSISDADGTLGLDLGVYG----------APETYLIDKQGIIR 146 (176)
T ss_dssp HHHHHHHTTC-EEEEEEESCCHHHHHHHHHHTTCCC-SEEEEETTCHHHHHHTCCS----------SCEEEEECTTCBEE
T ss_pred HHHHHHHCCC-EEEEEeCCCCHHHHHHHHHHcCCCC-ceEEECCcchHHHHcCCCC----------CCeEEEECCCCeEE
Confidence 3445555589 799999 689999999999999862 3479999999999999741 24679999 99999
Q ss_pred EEEEec
Q psy5401 89 QLNIEP 94 (109)
Q Consensus 89 ~~~v~~ 94 (109)
+.....
T Consensus 147 ~~~~g~ 152 (176)
T 3kh7_A 147 HKIVGV 152 (176)
T ss_dssp EEEESC
T ss_pred EEEcCC
Confidence 987653
No 76
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.43 E-value=6.9e-07 Score=60.09 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=58.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc-CCCCceEEeecCCch---HhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN-NAEGKIRFLADPNLE---FTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~-~~~~~i~~lsD~~~~---~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.+.+.+++|+++|+ +|++||.|+... .|.+.. +. +++++.|+++. +++.||+.. .+.
T Consensus 52 ~~~~~l~~l~~~~~~~~~-~vv~i~~d~~~~--~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~v~~----------~P~ 116 (152)
T 2lrt_A 52 AHNLALRELYNKYASQGF-EIYQISLDGDEH--FWKTSADNL--PWVCVRDANGAYSSYISLYNVTN----------LPS 116 (152)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECSCCHH--HHHHHHTTC--SSEEEECSSGGGCHHHHHHTCCS----------CSE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEEccCCHH--HHHHHHhCC--CceEEECCCCcchHHHHHcCccc----------Cce
Confidence 468999999999999899 799999998753 343322 23 38999999997 999998741 247
Q ss_pred EEEEe-CCeEEEEEE
Q psy5401 79 SMVVD-DGKITQLNI 92 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v 92 (109)
+|+|| +|+|++...
T Consensus 117 ~~lid~~G~i~~~~~ 131 (152)
T 2lrt_A 117 VFLVNRNNELSARGE 131 (152)
T ss_dssp EEEEETTTEEEEETT
T ss_pred EEEECCCCeEEEecC
Confidence 79998 999998754
No 77
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.42 E-value=1.7e-07 Score=63.08 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=64.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
.++|.+.+.+++|.+.++ .+++|+.|+ ..++|.+..++. +++++|.++++++.||+. + ...+|||
T Consensus 58 ~~~~~l~~~~~~~~~~~~-~~v~v~~d~--~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~------~----~P~~~li 122 (158)
T 3hdc_A 58 DEMPSMDRLVKSFPKGDL-VVLAVNVEK--RFPEKYRRAPVS--FNFLSDATGQVQQRYGAN------R----LPDTFIV 122 (158)
T ss_dssp HHHHHHHHHHHHSSTTSE-EEEEEECSS--SCCGGGGGCCCS--CEEEECTTSHHHHHTTCC------S----SSEEEEE
T ss_pred HHHHHHHHHHHHcccCCe-EEEEEeCCH--HHHHHHHHcCCC--ceEEECchHHHHHHhCCC------C----cceEEEE
Confidence 357888888999988889 799999999 677888888875 999999999999999974 2 1366899
Q ss_pred e-CCeEEEEEEec
Q psy5401 83 D-DGKITQLNIEP 94 (109)
Q Consensus 83 d-dG~V~~~~v~~ 94 (109)
| +|+|++.....
T Consensus 123 d~~G~i~~~~~G~ 135 (158)
T 3hdc_A 123 DRKGIIRQRVTGG 135 (158)
T ss_dssp CTTSBEEEEEESC
T ss_pred cCCCCEEEEEeCC
Confidence 8 99999988764
No 78
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.42 E-value=4.9e-07 Score=60.42 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=66.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.++++++.|+ .+++|+.|+ +...++|.+..++. ++++.|.. ++.+.|+...+. +...-..++|
T Consensus 51 ~~~~~l~~l~~~~~~~~v-~~v~v~~d~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~----~i~~~P~~~l 122 (165)
T 3or5_A 51 SEIPDMVQVQKTWASRGF-TFVGIAVNEQLPNVKNYMKTQGII--YPVMMATP-ELIRAFNGYIDG----GITGIPTSFV 122 (165)
T ss_dssp HHHHHHHHHHHHHTTTTE-EEEEEECSCCHHHHHHHHHHHTCC--SCEEECCH-HHHHHHHTTSTT----CSCSSSEEEE
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEECCCCHHHHHHHHHHcCCC--CceEecCH-HHHHHHhhhhcc----CCCCCCeEEE
Confidence 357888999999998899 799999887 88999999999986 88899876 999999776542 1233457789
Q ss_pred Ee-CCeEEEEEEe
Q psy5401 82 VD-DGKITQLNIE 93 (109)
Q Consensus 82 Vd-dG~V~~~~v~ 93 (109)
+| +|+|++....
T Consensus 123 id~~G~i~~~~~g 135 (165)
T 3or5_A 123 IDASGNVSGVIVG 135 (165)
T ss_dssp ECTTSBEEEEECS
T ss_pred ECCCCcEEEEEcC
Confidence 98 9999877654
No 79
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=98.39 E-value=1.6e-07 Score=65.60 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=62.8
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHH-HhcCCCCceEEee--cCCchHhH-hhCCcccc--c
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWC-RKNNAEGKIRFLA--DPNLEFTK-KLGVEHEI--P 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~-~~~~~~~~i~~ls--D~~~~~~k-~~G~~~~~--~ 68 (109)
.++|.+.+.+++|+++|+ +|++||+| ++..+++|. +..++. +++++ |.++..++ .|+..... .
T Consensus 65 ~~~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~l~~~D~~~~~~~~~~~~l~~~~~~ 141 (190)
T 2vup_A 65 GGYETATTLYNKYKSQGF-TVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAE--FPIMAKINVNGENAHPLYEYMKKTKPG 141 (190)
T ss_dssp HHHHHHHHHHHHHGGGTC-EEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCBSSSTTBCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcCCe-EEEEEEcCccCCCCCCCHHHHHHHHHHhcCCC--eEEEeecccCcccccHHHHHHHhhcCC
Confidence 468999999999999999 79999998 799999999 888885 88886 78887664 33221110 0
Q ss_pred cCC-c-eeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 VLG-G-WRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~~G-g-~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..| . .+....+|||| +|+|++....
T Consensus 142 v~~~P~i~~~~~~~lid~~G~i~~~~~g 169 (190)
T 2vup_A 142 ILKTKAIKWNFTSFLIDRDGVPVERFSP 169 (190)
T ss_dssp GGGCCSCCSTTCEEEECTTSCEEEEECT
T ss_pred cCCCccccccceEEEECCCCcEEEEECC
Confidence 001 0 01111679999 9999988653
No 80
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=98.38 E-value=4.7e-08 Score=67.81 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=62.4
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHh-cCCCCceEEee--cCCchHhH-hhCCccccccC
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRK-NNAEGKIRFLA--DPNLEFTK-KLGVEHEIPVL 70 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~-~~~~~~i~~ls--D~~~~~~k-~~G~~~~~~~~ 70 (109)
.++|.+.+.+++|+++|+ +|++||.| ++..+++|.+. .++. +++++ |.++..+. .|+.......
T Consensus 66 ~~~p~l~~l~~~~~~~~v-~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~--~p~~~~~d~~g~~~~~~~~~~~~~~P- 141 (181)
T 2p31_A 66 QHYRALQQLQRDLGPHHF-NVLAFPCNQFGQQEPDSNKEIESFARRTYSVS--FPMFSKIAVTGTGAHPAFKYLAQTSG- 141 (181)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCCCSSTTSCHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhcCCE-EEEEEECcCCCCCCCCCHHHHHHHHHhhcCCC--ceeEeecccCCccchhhhhhhhhcCC-
Confidence 468999999999999999 79999987 68999999998 8885 88886 56665544 3332221100
Q ss_pred CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 71 GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 71 Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
+..+-.|.+|||| +|+|++....
T Consensus 142 ~~~~~~~~~~lid~~G~i~~~~~g 165 (181)
T 2p31_A 142 KEPTWNFWKYLVAPDGKVVGAWDP 165 (181)
T ss_dssp CCCCSTTCEEEECTTSCEEEEECT
T ss_pred CccccceeEEEEcCCCCEEEEeCC
Confidence 1112223689999 9999988653
No 81
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=98.38 E-value=2.8e-07 Score=62.08 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=61.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHH-hcCCCCceEEe--ecCCchHhH-hhCCcccc--c
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCR-KNNAEGKIRFL--ADPNLEFTK-KLGVEHEI--P 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~-~~~~~~~i~~l--sD~~~~~~k-~~G~~~~~--~ 68 (109)
.++|.+.+.+++|+++|+ +|++||+| ++..+++|.+ .+++. ++++ .|.++..++ .|+..... .
T Consensus 49 ~~~~~l~~l~~~~~~~~~-~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~l~~~~~~ 125 (170)
T 2p5q_A 49 SNYAEMNQLYEKYKDQGL-EILAFPCNQFGEEEPGTNDQITDFVCTRFKSE--FPIFDKIDVNGENASPLYRFLKLGKWG 125 (170)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCTTTTCCCSCHHHHHHHHHHHTCCC--SCBBCCCBSSSTTBCHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhccCCE-EEEEEECCCCCCCCCCCHHHHHHHHHHhcCCC--ceeEeeeccCCCchHHHHHHHHhcCCC
Confidence 468899999999999899 79999985 6899999998 67875 8888 688887763 33211100 0
Q ss_pred cCCceeEeE---EEEEEe-CCeEEEEEEe
Q psy5401 69 VLGGWRSKR---YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~~Gg~r~~R---~~fiVd-dG~V~~~~v~ 93 (109)
..+ +.-. .+|||| +|+|++....
T Consensus 126 ~~~--~~~p~~~~~~lid~~G~i~~~~~g 152 (170)
T 2p5q_A 126 IFG--DDIQWNFAKFLVNKDGQVVDRYYP 152 (170)
T ss_dssp TTC--SCCCSTTCEEEECTTSCEEEEECT
T ss_pred ccC--CcccccccEEEECCCCCEEEeeCC
Confidence 001 1123 679999 9999998654
No 82
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.35 E-value=7.5e-07 Score=58.73 Aligned_cols=77 Identities=12% Similarity=0.022 Sum_probs=59.5
Q ss_pred CcchhHHH---cHHHHHhCCCCEEEEEecCCH-HHHHHHHHhcCCCCceEEeecCCch--HhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLA---KEKDLKAKGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADPNLE--FTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~---~~~~f~~~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~~i~~lsD~~~~--~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+ .+++|++.|+ +|++||+|+. -..+++.+..+.. ++.+.|+++. +++.||+. + -
T Consensus 48 ~~~~~l~~~~~l~~~~~~~~~-~vi~i~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~v~------~----~ 114 (142)
T 3eur_A 48 EMIEGLKASPVINGFTAAKKL-KVLSIYPDEELDEWKKHRNDFAKE--WTNGYDKELVIKNKNLYDLR------A----I 114 (142)
T ss_dssp HHHHHHHHCHHHHHHHHTTSE-EEEEEECSSCHHHHHHHGGGSCTT--SEEEECTTCHHHHTTCSCCT------T----C
T ss_pred HHHHHHhhhHHHHHHhccCCe-EEEEEEcCCCHHHHHHHHHhcccc--cccccCccchhhhhhhcCCC------c----C
Confidence 45788888 7999999999 7999999986 4455555666663 7889998886 77888763 1 2
Q ss_pred EEEEEEe-CCeEEEEEE
Q psy5401 77 RYSMVVD-DGKITQLNI 92 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v 92 (109)
..+|+|| +|+|++..+
T Consensus 115 P~~~lid~~G~i~~~~~ 131 (142)
T 3eur_A 115 PTLYLLDKNKTVLLKDA 131 (142)
T ss_dssp SEEEEECTTCBEEEEEE
T ss_pred CeEEEECCCCcEEecCC
Confidence 4679999 999998765
No 83
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=98.35 E-value=7.5e-07 Score=59.87 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=63.1
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHH-HHhcCCCCceEEee--cCCchHhH-hhCCccccc--
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAW-CRKNNAEGKIRFLA--DPNLEFTK-KLGVEHEIP-- 68 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW-~~~~~~~~~i~~ls--D~~~~~~k-~~G~~~~~~-- 68 (109)
.++|.+.+.+++|++.|+ +|++||.| ++..+++| .+.+++. +++++ |.++..++ .|+......
T Consensus 48 ~~~~~l~~l~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~l~~~~~~ 124 (169)
T 2v1m_A 48 KNYRQLQEMHTRLVGKGL-RILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQ--FDMFSKIKVNGSDADDLYKFLKSRQHG 124 (169)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SEEBCCCCCSSTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEEECCccCCCCCCCHHHHHHHHHHhcCCC--CceEEEEeecCccccHHHHHHHhhcCC
Confidence 468999999999999999 79999986 57899999 5888885 89997 88887764 343221110
Q ss_pred cCC-ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 69 VLG-GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 69 ~~G-g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
..| ..+.-..+|||| +|+|++....
T Consensus 125 ~~~~~i~~~P~~~lid~~G~i~~~~~g 151 (169)
T 2v1m_A 125 TLTNNIKWNFSKFLVDRQGQPVKRYSP 151 (169)
T ss_dssp SSSCSCCSTTCEEEECTTSCEEEEECT
T ss_pred ccCCcccccceEEEECCCCCEEEEcCC
Confidence 011 011123679999 9999998654
No 84
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.34 E-value=2.4e-06 Score=55.70 Aligned_cols=76 Identities=11% Similarity=0.204 Sum_probs=63.2
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecC------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVN------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~d------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
++|.+.+.++++.+. + .++.|++| ++...++|.+.+++. ++++.|.++++++.||+.. . -
T Consensus 47 ~~~~l~~l~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~v~~----~------P 112 (148)
T 2b5x_A 47 AMPQVNEFRDKYQDQ-L-NVVAVHMPRSEDDLDPGKIKETAAEHDIT--QPIFVDSDHALTDAFENEY----V------P 112 (148)
T ss_dssp HHHHHHHHHHHHTTT-S-EEEEEECCCSTTTSSHHHHHHHHHHTTCC--SCEEECSSCHHHHHTCCCC----S------S
T ss_pred HhHHHHHHHHHhcCC-c-EEEEEEcCCCccccCHHHHHHHHHHcCCC--cceEECCchhHHHHhCCCC----C------C
Confidence 567788888888776 8 79999988 799999999999985 8999999999999999742 1 2
Q ss_pred EEEEEe-CCeEEEEEEe
Q psy5401 78 YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~ 93 (109)
.++++| +|+|++....
T Consensus 113 ~~~lid~~G~i~~~~~g 129 (148)
T 2b5x_A 113 AYYVFDKTGQLRHFQAG 129 (148)
T ss_dssp EEEEECTTCBEEEEEES
T ss_pred EEEEECCCCcEEEEecC
Confidence 568888 9999987654
No 85
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.33 E-value=1.4e-06 Score=67.66 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=67.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.+++|++.|+ +|++||.| ++..+++|.+.+++. ++++.|.+.++++.||+. ..
T Consensus 99 ~~~p~L~~l~~~~~~~~v-~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~--fpv~~D~~~~l~~~ygV~----------~~ 165 (352)
T 2hyx_A 99 RAIPHVVGWYQAYKDSGL-AVIGVHTPEYAFEKVPGNVAKGAANLGIS--YPIALDNNYATWTNYRNR----------YW 165 (352)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCSSGGGGCHHHHHHHHHHHTCC--SCEEECTTSHHHHHTTCC----------EE
T ss_pred HHHHHHHHHHHHhhcCCe-EEEEEECCcccccCCHHHHHHHHHHcCCC--ccEEeCCcHHHHHHcCCC----------cc
Confidence 367889999999998899 79999974 799999999999986 999999999999999873 22
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
..+|||| +|+|++....
T Consensus 166 Pt~~lID~~G~Iv~~~~G 183 (352)
T 2hyx_A 166 PAEYLIDATGTVRHIKFG 183 (352)
T ss_dssp SEEEEECTTSBEEEEEES
T ss_pred CEEEEEeCCCeEEEEEcC
Confidence 4678998 9999998764
No 86
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=98.33 E-value=2.2e-07 Score=66.54 Aligned_cols=88 Identities=9% Similarity=0.025 Sum_probs=60.6
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHH------hcCCCCceEEeec--CCchHhH-------
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCR------KNNAEGKIRFLAD--PNLEFTK------- 59 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~------~~~~~~~i~~lsD--~~~~~~k------- 59 (109)
.++|.+.+.+++|++.|+ +|++||+| ++..+++|.+ ..++. +++++| .++..+.
T Consensus 64 ~e~p~l~~l~~~~~~~g~-~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~--fp~l~d~d~~g~~~~~~~~~l~ 140 (208)
T 2f8a_A 64 RDYTQMNELQRRLGPRGL-VVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPN--FMLFEKCEVNGAGAHPLFAFLR 140 (208)
T ss_dssp HHHHHHHHHHHHHGGGTE-EEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCS--SEEBCCCCCSSTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCe-EEEEEECCcccccCCCCHHHHHHHHHhcccccccccc--eEEEEEeecCCCCccHHHHHHH
Confidence 358999999999999999 79999987 5789999998 67764 999976 4454432
Q ss_pred -hhCC--------ccc-----cccC--CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 60 -KLGV--------EHE-----IPVL--GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 60 -~~G~--------~~~-----~~~~--Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
.++. ..+ .... ++.+..+.+|||| +|+|++.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g 191 (208)
T 2f8a_A 141 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSR 191 (208)
T ss_dssp HHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECT
T ss_pred hcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCC
Confidence 2221 000 0000 1122335699999 9999998764
No 87
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=98.31 E-value=7.6e-08 Score=65.82 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=50.6
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEec--------CCHHHHHHHH-HhcCCCCceEEeecC--Cch-HhHhhCCcccc--cc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAV--------NDAFVMEAWC-RKNNAEGKIRFLADP--NLE-FTKKLGVEHEI--PV 69 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~--------dd~f~~~aW~-~~~~~~~~i~~lsD~--~~~-~~k~~G~~~~~--~~ 69 (109)
++|.+.+.+++|+++|+ +|++||+ |++..+++|. +..++. +++++|+ ++. ..+.|++.... ..
T Consensus 49 ~~~~l~~l~~~~~~~~v-~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~--~p~~~d~d~~~~~~~~~~~~~~~~~~~v 125 (171)
T 3cmi_A 49 QYKELEALYKRYKDEGF-TIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVT--FPIMKKIDVNGGNEDPVYKFLKSQKSGM 125 (171)
T ss_dssp HHHHHHHHHHHHGGGTE-EEEEEEECSCC------------------CCC--SCBBCCCBSSSTTBCHHHHHHHHHSCCS
T ss_pred hHHHHHHHHHHhccCCe-EEEEEECcccCCCCCCCHHHHHHHHHhccCCC--ceEEeeccCCCccchHHHHHHHhccCCc
Confidence 57899999999999999 7999998 5788899999 888875 8999864 454 33444432211 00
Q ss_pred CC--ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 70 LG--GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 70 ~G--g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
.+ .....|.+|||| +|+|++....
T Consensus 126 ~~~P~i~~~~~~~lid~~G~i~~~~~g 152 (171)
T 3cmi_A 126 LGLRGIKWNFEKFLVDKKGKVYERYSS 152 (171)
T ss_dssp SSCCSCCSTTCEEEECSSSCEEEEECT
T ss_pred CCCCcccccceEEEECCCCCEEEEeCC
Confidence 11 112235889999 9999998653
No 88
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.30 E-value=1.9e-06 Score=56.34 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=63.3
Q ss_pred CcchhHHHcHHHH-HhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEeecC---CchHhHhhCCccccccCCceeEeE
Q psy5401 3 THLPGYLAKEKDL-KAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADP---NLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 3 ~hlp~f~~~~~~f-~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~lsD~---~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
.++|.+.+.++++ .+.|+ .|+.|+.|+ +-..++|.+.+++. ++++.|+ +..+++.||+.. ..
T Consensus 50 ~~~~~l~~l~~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~~----------~P 116 (148)
T 3fkf_A 50 EANAELKRLNKEYKKNKNF-AMLGISLDIDREAWETAIKKDTLS--WDQVCDFTGLSSETAKQYAILT----------LP 116 (148)
T ss_dssp HHHHHHHHHHHHTTTCTTE-EEEEEECCSCHHHHHHHHHHTTCC--SEEECCSCGGGCHHHHHTTCCS----------SS
T ss_pred HHhHHHHHHHHHhcCCCCe-EEEEEECCCCHHHHHHHHHHcCCC--ceEEEccCCcchHHHHhcCCCC----------cC
Confidence 4678889999999 78889 799999985 55888888888885 8999998 789999999751 13
Q ss_pred EEEEEe-CCeEEEEEE
Q psy5401 78 YSMVVD-DGKITQLNI 92 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v 92 (109)
.++++| +|+|++...
T Consensus 117 ~~~lid~~G~i~~~~~ 132 (148)
T 3fkf_A 117 TNILLSPTGKILARDI 132 (148)
T ss_dssp EEEEECTTSBEEEESC
T ss_pred EEEEECCCCeEEEecC
Confidence 568888 999998765
No 89
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.30 E-value=1.7e-06 Score=55.77 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=59.8
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
++|.+.+.++++. ++ .++.|+.|+ +...++|.+.+++. ++++.|.++++++.||+. + -..++++
T Consensus 42 ~~~~l~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~i~------~----~P~~~li 106 (136)
T 1lu4_A 42 EAPSLSQVAAANP--AV-TFVGIATRADVGAMQSFVSKYNLN--FTNLNDADGVIWARYNVP------W----QPAFVFY 106 (136)
T ss_dssp HHHHHHHHHHHCT--TS-EEEEEECSSCHHHHHHHHHHHTCC--SEEEECTTSHHHHHTTCC------S----SSEEEEE
T ss_pred HHHHHHHHHHHCC--Cc-EEEEEEcCCCHHHHHHHHHHcCCC--ceEEECCchhHHHhcCCC------C----CCEEEEE
Confidence 4667777777775 78 799999988 99999999999985 999999999999999874 2 1367888
Q ss_pred e-CCeEEEEEE
Q psy5401 83 D-DGKITQLNI 92 (109)
Q Consensus 83 d-dG~V~~~~v 92 (109)
| +|+|+ ...
T Consensus 107 d~~G~i~-~~~ 116 (136)
T 1lu4_A 107 RADGTST-FVN 116 (136)
T ss_dssp CTTSCEE-EEC
T ss_pred CCCCcEE-EEE
Confidence 8 99998 444
No 90
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.28 E-value=1.8e-06 Score=58.15 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=59.4
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecC-------------------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCc
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVN-------------------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 64 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~d-------------------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~ 64 (109)
++|.+.+.+++++ ++ .|++|+.| ++..+++|.+.+++. .++++.| ++++++.||+.
T Consensus 55 ~~~~l~~l~~~~~--~v-~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d-~~~~~~~~~v~ 129 (165)
T 3ha9_A 55 MADLLDRLTEKYR--EI-SVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP-SWIMVMD-DGSLVEKFNVR 129 (165)
T ss_dssp HHHHHHHHHHHCT--TE-EEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCT-TSEEEEC-CSHHHHHTTCC
T ss_pred hHHHHHHHHHHcC--Cc-EEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCC-CeeEEeC-hHHHHHHhCCC
Confidence 5677777777776 88 79999997 899999999999984 3999999 99999999874
Q ss_pred cccccCCceeEeEEEEEEe-CCeEEE
Q psy5401 65 HEIPVLGGWRSKRYSMVVD-DGKITQ 89 (109)
Q Consensus 65 ~~~~~~Gg~r~~R~~fiVd-dG~V~~ 89 (109)
. ...++||| +|+|++
T Consensus 130 ~----------~P~~~lid~~G~i~~ 145 (165)
T 3ha9_A 130 S----------IDYIVIMDKSSNVLY 145 (165)
T ss_dssp S----------SSEEEEEETTCCEEE
T ss_pred C----------ceEEEEEcCCCcEEE
Confidence 2 13678888 999998
No 91
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=97.61 E-value=9.4e-08 Score=64.17 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred CcchhHHH-cHHHHH-hCCCCEEEEEecCCH-HHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLA-KEKDLK-AKGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~-~~~~f~-~~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+ .+++++ +.++ .|+.|+.|+. ...++|.+..++. +++++|++++++++||+... | --.+
T Consensus 50 ~~~~~l~~~l~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~----~----~P~~ 118 (159)
T 2ls5_A 50 KEMPFIEKDIWLKHKDNADF-ALIGIDRDEPLEKVLAFAKSTGVT--YPLGLDPGADIFAKYALRDA----G----ITRN 118 (159)
Confidence 46788887 778887 7789 6999999976 4688899888884 99999999999999997532 2 1246
Q ss_pred EEEe-CCeEEEEEEe
Q psy5401 80 MVVD-DGKITQLNIE 93 (109)
Q Consensus 80 fiVd-dG~V~~~~v~ 93 (109)
+++| +|+|++....
T Consensus 119 ~lid~~G~i~~~~~g 133 (159)
T 2ls5_A 119 VLIDREGKIVKLTRL 133 (159)
Confidence 8888 9999987654
No 92
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.21 E-value=1.9e-06 Score=57.18 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=61.8
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEec---CCHHHHHHHHHhcCCCCceEEeec---CCchHhHhhCCccccccCCceeEeE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAV---NDAFVMEAWCRKNNAEGKIRFLAD---PNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~---dd~f~~~aW~~~~~~~~~i~~lsD---~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
++|.+.+.++++ ++ .|+.|+. |++...++|.+..++. ++++.| .+.++++.||+. + ..
T Consensus 48 ~~~~l~~l~~~~---~v-~~v~v~~d~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~v~------~----~P 111 (154)
T 3ia1_A 48 EFPGLHRVAEET---GV-PFYVISREPRDTREVVLEYMKTYPRF--IPLLASDRDRPHEVAARFKVL------G----QP 111 (154)
T ss_dssp HHHHHHHHHHHH---CC-CEEEEECCTTCCHHHHHHHHTTCTTE--EECBCCSSCCHHHHHTTSSBC------S----SC
T ss_pred HHHHHHHHHHHc---CC-eEEEEeCCCcccHHHHHHHHHHcCCC--cccccccccchHHHHHHhCCC------c----cc
Confidence 567788888887 89 5999999 9999999999999884 999998 788999999874 1 13
Q ss_pred EEEEEe-CCeEEEEEEe
Q psy5401 78 YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~ 93 (109)
.+++|| +|+|++....
T Consensus 112 ~~~lid~~G~i~~~~~g 128 (154)
T 3ia1_A 112 WTFVVDREGKVVALFAG 128 (154)
T ss_dssp EEEEECTTSEEEEEEES
T ss_pred EEEEECCCCCEEEEEcC
Confidence 678998 9999988764
No 93
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=98.19 E-value=6.2e-07 Score=62.47 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHhc-CCCCceEEee--cCCchHhH-hhCCcccc--
Q psy5401 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRKN-NAEGKIRFLA--DPNLEFTK-KLGVEHEI-- 67 (109)
Q Consensus 2 ~~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~~-~~~~~i~~ls--D~~~~~~k-~~G~~~~~-- 67 (109)
..++|.+.+.+++|+++|+ +|++||+| ++..+++|.+.. ++. +++++ |.++..+. .|+.....
T Consensus 62 ~~~~p~l~~l~~~~~~~~~-~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~l~~~~~ 138 (187)
T 3dwv_A 62 KGGYETATTLYNKYKSQGF-TVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAE--FPIMAKINVNGENAHPLYEYMKKTKP 138 (187)
T ss_dssp TTHHHHHHHHHHHHGGGTC-EEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCS--SCBBCCBCCSCC-CCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhhCCe-EEEEEECcccCCCCCCCHHHHHHHHHhccCCC--CceeeccccCCcchhHHHHHHHhhcC
Confidence 3578999999999999999 79999987 578888888744 775 88887 67776553 23111110
Q ss_pred ccCCceeEeE---EEEEEe-CCeEEEEEEe
Q psy5401 68 PVLGGWRSKR---YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 68 ~~~Gg~r~~R---~~fiVd-dG~V~~~~v~ 93 (109)
...| ...-. .+|||| +|+|++....
T Consensus 139 ~~~~-~~~iP~~~~~~liD~~G~i~~~~~g 167 (187)
T 3dwv_A 139 GILA-TKAIKWNFTSFLIDRDGVPVERFSP 167 (187)
T ss_dssp CSBS-SSSCCSTTCEEEECTTSCEEEEECT
T ss_pred CccC-CCccccceeEEEECCCCCEEEEECC
Confidence 0011 11223 679999 9999998653
No 94
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=98.15 E-value=2.4e-05 Score=53.95 Aligned_cols=89 Identities=16% Similarity=0.180 Sum_probs=59.3
Q ss_pred cchhHHHcHHHHHhCC--CCEEEEEec----CCHHHHHHHHHhcCCCC-ceEEeecCCch-Hh----HhhCCccccccCC
Q psy5401 4 HLPGYLAKEKDLKAKG--IHEIFCIAV----NDAFVMEAWCRKNNAEG-KIRFLADPNLE-FT----KKLGVEHEIPVLG 71 (109)
Q Consensus 4 hlp~f~~~~~~f~~~G--vd~V~~iS~----dd~f~~~aW~~~~~~~~-~i~~lsD~~~~-~~----k~~G~~~~~~~~G 71 (109)
.++.+.+.++++++.| + +++.||+ |+|..+++|.+..+... .+.+|.+...+ +. ..|+.....+..|
T Consensus 51 ~~~~l~~l~~~~~~~~~~v-~~v~isvDp~~Dtp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~ 129 (170)
T 4hde_A 51 MTANMAKLQKMAKEEKLDV-QFVSFSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENG 129 (170)
T ss_dssp HHHHHHHHHHHHHHTTCCC-EEEEEESCTTTCCHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTS
T ss_pred HHHHHHHHHHhhhcccccc-eeEeeecCcccccHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCc
Confidence 3566777777777655 6 6899996 58999999999987643 37888876543 22 3355544332222
Q ss_pred ceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 72 GWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 72 g~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
...-.+.+|||| +|+|+..+..
T Consensus 130 ~~~H~~~~~liD~~G~i~~~~~g 152 (170)
T 4hde_A 130 QVIHGTSFYLIDQNGKVMKKYSG 152 (170)
T ss_dssp CCBCCCEEEEECTTSCEEEEEES
T ss_pred eEEeeeEEEEEcCCCeEEEEECC
Confidence 223336789999 9999977653
No 95
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.14 E-value=4.7e-06 Score=54.94 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=63.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecCCH-HHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEE
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fi 81 (109)
.++|.+.+.++++.+.|+ .++.|+.|+. ...++|.+..++.. ++++.|.++++++.||+.. . -.++|
T Consensus 47 ~~~~~l~~l~~~~~~~~~-~~v~v~~d~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~v~~----~------P~~~l 114 (152)
T 2lja_A 47 GELPALKELEEKYAGKDI-HFVSLSCDKNKKAWENMVTKDQLKG-IQLHMGTDRTFMDAYLING----I------PRFIL 114 (152)
T ss_dssp GTHHHHHHHHHHSTTSSE-EEEEEECCSCHHHHHHHHHHHTCCS-EEEECSSCTHHHHHTTCCS----S------CCEEE
T ss_pred HHhHHHHHHHHHhccCCe-EEEEEEccCcHHHHHHHHHhcCCCC-ceeecCcchhHHHHcCcCC----C------CEEEE
Confidence 467888888888888889 7999998874 57888988888864 7999999999999999742 1 24688
Q ss_pred Ee-CCeEEEEE
Q psy5401 82 VD-DGKITQLN 91 (109)
Q Consensus 82 Vd-dG~V~~~~ 91 (109)
+| +|+|++..
T Consensus 115 id~~G~i~~~~ 125 (152)
T 2lja_A 115 LDRDGKIISAN 125 (152)
T ss_dssp ECTTSCEEESS
T ss_pred ECCCCeEEEcc
Confidence 88 99998864
No 96
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.13 E-value=5e-06 Score=52.98 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=60.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEE------ecCCHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCI------AVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKR 77 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~i------S~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R 77 (109)
++|.+.+.+++ ...++ .++.| +.+++...++|.+..+.. .+++++|.++++++.||+. + ..
T Consensus 40 ~~~~l~~~~~~-~~~~~-~~v~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~------~----~P 106 (138)
T 4evm_A 40 SLPDTDEIAKE-AGDDY-VVLTVVSPGHKGEQSEADFKNWYKGLDYK-NLPVLVDPSGKLLETYGVR------S----YP 106 (138)
T ss_dssp HHHHHHHHHHT-CTTTE-EEEEEECTTSTTCCCHHHHHHHHTTCCCT-TCCEEECTTCHHHHHTTCC------S----SS
T ss_pred HHHHHHHHHHH-hCCCc-EEEEEEcCCCCchhhHHHHHHHHhhcCCC-CeeEEECcchHHHHHcCcc------c----CC
Confidence 45666666665 33467 68888 778999999999999884 3999999999999999874 2 13
Q ss_pred EEEEEe-CCeEEEEEEe
Q psy5401 78 YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~ 93 (109)
.++++| +|+|++....
T Consensus 107 ~~~lid~~G~i~~~~~g 123 (138)
T 4evm_A 107 TQAFIDKEGKLVKTHPG 123 (138)
T ss_dssp EEEEECTTCCEEEEEES
T ss_pred eEEEECCCCcEEEeecC
Confidence 678898 9999987664
No 97
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.12 E-value=3.3e-06 Score=56.39 Aligned_cols=79 Identities=13% Similarity=0.151 Sum_probs=61.7
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC------CHHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEe
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN------DAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d------d~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.++|.+.+.+++|+..|+ +|++||.| ++...++|.+..+... ++++.|.+.++++.||+. + -
T Consensus 55 ~~~~~l~~l~~~~~~~~~-~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~v~------~----~ 122 (164)
T 2h30_A 55 SELGQAEKWAQDAKFSSA-NLITVASPGFLHEKKDGEFQKWYAGLNYPK-LPVVTDNGGTIAQNLNIS------V----Y 122 (164)
T ss_dssp HHHHHHHHHHTCGGGTTS-EEEEEECTTSTTCCCTTHHHHHHTTSCCTT-SCEEECTTCHHHHHTTCC------S----S
T ss_pred HHHHHHHHHHHHcccCCc-EEEEEEcCCCccccCHHHHHHHHHhCCCCc-ceEEEcCchHHHHHcCCC------c----c
Confidence 356888888888888899 79999975 4667777777766643 789999999999999974 2 1
Q ss_pred EEEEEEe-CCeEEEEEEe
Q psy5401 77 RYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~ 93 (109)
..++++| +|+|++....
T Consensus 123 P~~~lid~~G~i~~~~~g 140 (164)
T 2h30_A 123 PSWALIGKDGDVQRIVKG 140 (164)
T ss_dssp SEEEEECTTSCEEEEEES
T ss_pred ceEEEECCCCcEEEEEcC
Confidence 2568888 9999987654
No 98
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.02 E-value=2.5e-05 Score=49.91 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=57.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEeecCCchHhHhhCCccccccCCceeEeEEEEEE
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiV 82 (109)
++|.+.+.++++. ++ .++.|+.|+ +...++|.+.+++. .++++.|.+.++++.||+. + -..++++
T Consensus 43 ~~~~l~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~i~------~----~P~~~~i 108 (136)
T 1zzo_A 43 EAPVVGQVAASHP--EV-TFVGVAGLDQVPAMQEFVNKYPVK-TFTQLADTDGSVWANFGVT------Q----QPAYAFV 108 (136)
T ss_dssp HHHHHHHHHHHCT--TS-EEEEEECSSCHHHHHHHHHHTTCT-TSEEEECTTCHHHHHTTCC------S----SSEEEEE
T ss_pred HHHHHHHHHHHcC--Ce-EEEEEeCCCCHHHHHHHHHHcCCC-ceEEEEcCCcHHHHHcCCC------C----CceEEEE
Confidence 4566666666665 78 799999876 89999999999984 3999999999999999874 2 1256888
Q ss_pred e-CCeEE
Q psy5401 83 D-DGKIT 88 (109)
Q Consensus 83 d-dG~V~ 88 (109)
| +|+|+
T Consensus 109 d~~g~i~ 115 (136)
T 1zzo_A 109 DPHGNVD 115 (136)
T ss_dssp CTTCCEE
T ss_pred CCCCCEE
Confidence 8 99987
No 99
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.01 E-value=2.8e-05 Score=52.28 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred HcHHHHHhCCCCEEEEEec-CCHHHHHHHHHhcCCCCceE-EeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCe
Q psy5401 10 AKEKDLKAKGIHEIFCIAV-NDAFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGK 86 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~-dd~f~~~aW~~~~~~~~~i~-~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~ 86 (109)
..+.++.+.|+ .|+.|+. +++..+++|.+.+++. ++ ++.|.++++++.||+. + -..+|+|| +|+
T Consensus 71 ~~l~~l~~~~v-~vv~v~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~------~----~P~~~lid~~G~ 137 (168)
T 2b1k_A 71 QYLNQLSAQGI-RVVGMNYKDDRQKAISWLKELGNP--YALSLFDGDGMLGLDLGVY------G----APETFLIDGNGI 137 (168)
T ss_dssp HHHHHHHHTTC-CEEEEEESCCHHHHHHHHHHHCCC--CSEEEEETTCHHHHHHTCC------S----SSEEEEECTTSB
T ss_pred HHHHHHHHCCC-EEEEEECCCChHHHHHHHHHcCCC--CceeeECcchHHHHHcCcc------c----cCEEEEECCCCe
Confidence 34455655589 5999995 6788999999999885 54 7899999999999874 2 13678998 999
Q ss_pred EEEEEEe
Q psy5401 87 ITQLNIE 93 (109)
Q Consensus 87 V~~~~v~ 93 (109)
|++....
T Consensus 138 i~~~~~g 144 (168)
T 2b1k_A 138 IRYRHAG 144 (168)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9987764
No 100
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=98.00 E-value=2.4e-06 Score=58.88 Aligned_cols=87 Identities=10% Similarity=0.119 Sum_probs=59.5
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEecC--------CHHHHHHHHHh-cCCCCceEEeec--CCchHhH-hhCCccccccC
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAVN--------DAFVMEAWCRK-NNAEGKIRFLAD--PNLEFTK-KLGVEHEIPVL 70 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~d--------d~f~~~aW~~~-~~~~~~i~~lsD--~~~~~~k-~~G~~~~~~~~ 70 (109)
.++|.+.+.+++|+++|+ +|++||+| ++..+++|.+. .++. +++++| .++..+. .|+...... .
T Consensus 55 ~~~p~l~~l~~~~~~~~~-~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~-~ 130 (180)
T 3kij_A 55 RNYLGLKELHKEFGPSHF-SVLAFPCNQFGESEPRPSKEVESFARKNYGVT--FPIFHKIKILGSEGEPAFRFLVDSS-K 130 (180)
T ss_dssp HHHHHHHHHHHHHTTTSE-EEEEEECCCSTTCCCSCHHHHHHHHHHHHCCC--SCBBCCCCCSSTTCCHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhccCCe-EEEEEECCccccCCCCCHHHHHHHHHHhcCCC--CceeeeeeccCccccHHHHHHHhcC-C
Confidence 468999999999999999 79999965 89999999999 8886 777764 4443332 222211110 0
Q ss_pred CceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 71 GGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 71 Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
+..+-...+|||| +|+|++....
T Consensus 131 ~~p~~~~~~~lid~~G~i~~~~~g 154 (180)
T 3kij_A 131 KEPRWNFWKYLVNPEGQVVKFWRP 154 (180)
T ss_dssp CCCSSTTCEEEECTTSCEEEEECT
T ss_pred CCccccceEEEECCCCCEEEEECC
Confidence 1111112378999 9999988754
No 101
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=97.82 E-value=6.6e-06 Score=54.11 Aligned_cols=78 Identities=17% Similarity=0.138 Sum_probs=60.0
Q ss_pred CcchhHHHcHHHHHh-CCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEee-cCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLKA-KGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLA-DPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~-~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~ls-D~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+.++++++ .++ +|+.||.| ++...++|.+.++.. .++++. |.+.++++.||+.. . -.+
T Consensus 45 ~~~~~l~~l~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~----~------P~~ 112 (144)
T 1i5g_A 45 AFTPQLIDFYKAHAEKKNF-EVMLISWDESAEDFKDYYAKMPWL-ALPFEDRKGMEFLTTGFDVKS----I------PTL 112 (144)
T ss_dssp HHHHHHHHHHHHHTTTTTE-EEEEEECCSSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHTTCCS----S------SEE
T ss_pred HHHHHHHHHHHHhccCCCE-EEEEEeCCCCHHHHHHHHHhCCcc-ccccCchHHHHHHHHHcCCCC----C------CEE
Confidence 357888888899885 688 79999999 688889998887753 266665 77899999999741 1 256
Q ss_pred EEEe--CCeEEEEEE
Q psy5401 80 MVVD--DGKITQLNI 92 (109)
Q Consensus 80 fiVd--dG~V~~~~v 92 (109)
+|+| +|+|++...
T Consensus 113 ~lid~~~G~i~~~~~ 127 (144)
T 1i5g_A 113 VGVEADSGNIITTQA 127 (144)
T ss_dssp EEEETTTCCEEESCH
T ss_pred EEEECCCCcEEeccc
Confidence 7887 999988653
No 102
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=97.74 E-value=1e-05 Score=53.34 Aligned_cols=78 Identities=14% Similarity=0.198 Sum_probs=59.5
Q ss_pred CcchhHHHcHHHHHh-CCCCEEEEEecC-CHHHHHHHHHhcCCCCceEEee-cCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLKA-KGIHEIFCIAVN-DAFVMEAWCRKNNAEGKIRFLA-DPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~-~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~~i~~ls-D~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+.++++++ .++ +|+.||.| ++...++|.+.++.. .++++. |.+.++++.||+.. . ..+
T Consensus 45 ~~~p~l~~l~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~----~------Pt~ 112 (146)
T 1o8x_A 45 GFTPQLIEFYDKFHESKNF-EVVFCTWDEEEDGFAGYFAKMPWL-AVPFAQSEAVQKLSKHFNVES----I------PTL 112 (146)
T ss_dssp HHHHHHHHHHHHHTTTTTE-EEEEEECCCSHHHHHHHHTTCSSE-ECCGGGHHHHHHHHHHTTCCS----S------SEE
T ss_pred HHHHHHHHHHHHhhhcCCe-EEEEEeCCCCHHHHHHHHHHCCce-eeccchhhHHHHHHHHhCCCC----C------CEE
Confidence 357888888999884 688 79999999 577888888887653 266655 77899999998741 1 256
Q ss_pred EEEe--CCeEEEEEE
Q psy5401 80 MVVD--DGKITQLNI 92 (109)
Q Consensus 80 fiVd--dG~V~~~~v 92 (109)
+++| +|+|++...
T Consensus 113 ~lid~~~G~i~~~~~ 127 (146)
T 1o8x_A 113 IGVDADSGDVVTTRA 127 (146)
T ss_dssp EEEETTTCCEEESCH
T ss_pred EEEECCCCeEEEecc
Confidence 7888 999988654
No 103
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=96.88 E-value=5.2e-06 Score=54.07 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=60.4
Q ss_pred CcchhHHHcHHHHHh--CCCCEEEEEecC-CHHHHHHHHHhcCCCC-ceEEeecCCchHhHhhCCccccccCCceeEeEE
Q psy5401 3 THLPGYLAKEKDLKA--KGIHEIFCIAVN-DAFVMEAWCRKNNAEG-KIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRY 78 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~--~Gvd~V~~iS~d-d~f~~~aW~~~~~~~~-~i~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~ 78 (109)
.++|.+.+.+++|++ .++ +|+.||.| ++...++|.+.+++.- .+++..|.++++++.||+. + -..
T Consensus 43 ~~~~~l~~~~~~~~~~~~~~-~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------~----~P~ 111 (143)
T 2lus_A 43 GFTPILADMYSELVDDSAPF-EIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT------G----IPA 111 (143)
Confidence 467888888888853 578 69999998 5567788888776642 2677888889999999873 1 135
Q ss_pred EEEEe-CCeEEEEEEe
Q psy5401 79 SMVVD-DGKITQLNIE 93 (109)
Q Consensus 79 ~fiVd-dG~V~~~~v~ 93 (109)
++++| +|+|++....
T Consensus 112 ~~lid~~G~i~~~~~~ 127 (143)
T 2lus_A 112 LVIVKKDGTLISMNGR 127 (143)
Confidence 68888 9999987543
No 104
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=97.61 E-value=1.6e-05 Score=54.28 Aligned_cols=78 Identities=19% Similarity=0.153 Sum_probs=57.3
Q ss_pred CcchhHHHcHHHHHh-CCCCEEEEEecCCH-HHHHHHHHhcCCCCceEEeecC-CchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLKA-KGIHEIFCIAVNDA-FVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~-~Gvd~V~~iS~dd~-f~~~aW~~~~~~~~~i~~lsD~-~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+.+++|++ .++ +|++||.|+. ...++|.+..+.. .+++..|. +.++++.||+. + -..+
T Consensus 65 ~~~p~l~~l~~~~~~~~~v-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~------~----~Pt~ 132 (165)
T 3s9f_A 65 GFTPQLVEFYEKHHDSKNF-EIILASWDEEEDDFNAYYAKMPWL-SIPFANRNIVEALTKKYSVE------S----IPTL 132 (165)
T ss_dssp HHHHHHHHHHHHHTTTTTE-EEEEEECCCSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHTTCC------S----SSEE
T ss_pred HHHHHHHHHHHHhccCCCe-EEEEEecCCCHHHHHHHHHhCCCc-ccccCchhHHHHHHHHcCCC------C----CCEE
Confidence 357889999999986 788 7999998875 6677777766542 25555543 48999999874 2 1366
Q ss_pred EEEe-C-CeEEEEEE
Q psy5401 80 MVVD-D-GKITQLNI 92 (109)
Q Consensus 80 fiVd-d-G~V~~~~v 92 (109)
+|+| + |+|++...
T Consensus 133 ~lid~~~G~iv~~~~ 147 (165)
T 3s9f_A 133 IGLNADTGDTVTTRA 147 (165)
T ss_dssp EEEETTTCCEEESCH
T ss_pred EEEeCCCCEEEeccc
Confidence 8888 7 99988654
No 105
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=97.55 E-value=2.9e-05 Score=50.74 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=57.3
Q ss_pred CcchhHHHcHHHHH-hCCCCEEEEEecCC-HHHHHHHHHhcCCCCceEEee-cCCchHhHhhCCccccccCCceeEeEEE
Q psy5401 3 THLPGYLAKEKDLK-AKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIRFLA-DPNLEFTKKLGVEHEIPVLGGWRSKRYS 79 (109)
Q Consensus 3 ~hlp~f~~~~~~f~-~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~~ls-D~~~~~~k~~G~~~~~~~~Gg~r~~R~~ 79 (109)
.++|.+.+.+++++ +.++ +|+.||.|+ +...++|.+.++.. .++++. |.+.++++.||+.. . ..+
T Consensus 45 ~~~~~l~~l~~~~~~~~~~-~vv~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~----~------Pt~ 112 (144)
T 1o73_A 45 GFTPVLAEFYEKHHVAKNF-EVVLISWDENESDFHDYYGKMPWL-ALPFDQRSTVSELGKTFGVES----I------PTL 112 (144)
T ss_dssp HHHHHHHHHHHHHTTTTTE-EEEEEECCSSHHHHHHHHTTCSSE-ECCTTCHHHHHHHHHHHTCCS----S------SEE
T ss_pred HHHHHHHHHHHHhccCCCE-EEEEEeCCCCHHHHHHHHHhCCce-EeeccchhHHHHHHHHcCCCC----C------CEE
Confidence 35788888888887 4688 799999995 56777887776542 255554 67889999998741 1 256
Q ss_pred EEEe--CCeEEEEEE
Q psy5401 80 MVVD--DGKITQLNI 92 (109)
Q Consensus 80 fiVd--dG~V~~~~v 92 (109)
+++| +|+|++...
T Consensus 113 ~lid~~~G~i~~~~~ 127 (144)
T 1o73_A 113 ITINADTGAIIGTQA 127 (144)
T ss_dssp EEEETTTCCEEESCH
T ss_pred EEEECCCCeEEecch
Confidence 8888 999987653
No 106
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.55 E-value=0.00054 Score=44.90 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=53.4
Q ss_pred cHHHHHhCC-CCEEEEEec-CCHHHHHHHHHhcCCCCceE-EeecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCe
Q psy5401 11 KEKDLKAKG-IHEIFCIAV-NDAFVMEAWCRKNNAEGKIR-FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGK 86 (109)
Q Consensus 11 ~~~~f~~~G-vd~V~~iS~-dd~f~~~aW~~~~~~~~~i~-~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~ 86 (109)
.+.++.+.+ + .++.|+. +++...++|.+.+++. ++ ++.|.+.++++.||+. + -..+|++| +|+
T Consensus 63 ~l~~l~~~~~v-~~v~v~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~v~------~----~P~~~~id~~G~ 129 (156)
T 1kng_A 63 LLTELGKDKRF-QLVGINYKDAADNARRFLGRYGNP--FGRVGVDANGRASIEWGVY------G----VPETFVVGREGT 129 (156)
T ss_dssp HHHHHTTCTTS-EEEEEEESCCHHHHHHHHHHHCCC--CSEEEEETTSHHHHHTTCC------S----SCEEEEECTTSB
T ss_pred HHHHHHhcCCe-EEEEEECCCCHHHHHHHHHHcCCC--CceeeeCchhHHHHhcCcC------c----cCeEEEEcCCCC
Confidence 334444334 7 7999996 5788899999999985 65 8899999999999874 2 13578998 999
Q ss_pred EEEEEEe
Q psy5401 87 ITQLNIE 93 (109)
Q Consensus 87 V~~~~v~ 93 (109)
|++....
T Consensus 130 i~~~~~g 136 (156)
T 1kng_A 130 IVYKLVG 136 (156)
T ss_dssp EEEEEES
T ss_pred EEEEEeC
Confidence 9987653
No 107
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=79.84 E-value=1.9 Score=26.73 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=22.7
Q ss_pred ecCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEE
Q psy5401 51 ADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 51 sD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v 92 (109)
.|.+.++++.||+.. . -.+++++ +|++.+...
T Consensus 68 ~d~~~~~~~~~~v~~----~------Pt~~~~~~~G~~~~~~~ 100 (126)
T 2l57_A 68 EEKNIDLAYKYDANI----V------PTTVFLDKEGNKFYVHQ 100 (126)
T ss_dssp SSHHHHHHHHTTCCS----S------SEEEEECTTCCEEEEEE
T ss_pred CCchHHHHHHcCCcc----e------eEEEEECCCCCEEEEec
Confidence 467788999998742 1 2557778 999887554
No 108
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=78.00 E-value=5.4 Score=26.84 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=35.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .++.+|.........+.+.+++.
T Consensus 94 ~~g~~~~l~~l~~~g~-~~~ivS~~~~~~~~~~~~~~g~~ 132 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGD-LCALVTATNSFVTAPIARAFGVQ 132 (232)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCC
Confidence 6888899999999999 69999999999999999999885
No 109
>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}
Probab=77.99 E-value=2.5 Score=32.69 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=35.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
-|+..+.++.+++.|+ .|+.||-...+..+.|++.+|+
T Consensus 223 ~p~~~eLi~~L~~~G~-~v~IVSgg~~~~v~~ia~~lg~ 260 (385)
T 4gxt_A 223 LDEMVDLYRSLEENGI-DCYIVSASFIDIVRAFATDTNN 260 (385)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHCTTS
T ss_pred CHHHHHHHHHHHHCCC-eEEEEcCCcHHHHHHHHHHhCc
Confidence 4889999999999999 6999999999999999998864
No 110
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Probab=76.49 E-value=9.9 Score=25.11 Aligned_cols=59 Identities=14% Similarity=0.068 Sum_probs=43.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc----------hHhHhhCCc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL----------EFTKKLGVE 64 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~----------~~~k~~G~~ 64 (109)
.|+..+.++++++.|+ .++.+|..+......+.+..++..- ..+.+|..+ .+.+.+|+.
T Consensus 93 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~~~ 163 (233)
T 3s6j_A 93 LPGAVELLETLDKENL-KWCIATSGGIDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAP 163 (233)
T ss_dssp CTTHHHHHHHHHHTTC-CEEEECSSCHHHHHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHCCC-eEEEEeCCchhhHHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHHhCCC
Confidence 4677788899999999 5999999999889999988887542 355555332 466677764
No 111
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=75.70 E-value=6.6 Score=26.08 Aligned_cols=43 Identities=9% Similarity=-0.102 Sum_probs=35.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC-HHHHHHHHHhcCCCCceE
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND-AFVMEAWCRKNNAEGKIR 48 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd-~f~~~aW~~~~~~~~~i~ 48 (109)
.|+..+.+++++++|+ .++.+|..+ ......+.+.+++..-|.
T Consensus 70 ~~g~~e~L~~L~~~G~-~v~ivT~~~~~~~~~~~l~~~gl~~~f~ 113 (187)
T 2wm8_A 70 YPEVPEVLKRLQSLGV-PGAAASRTSEIEGANQLLELFDLFRYFV 113 (187)
T ss_dssp CTTHHHHHHHHHHHTC-CEEEEECCSCHHHHHHHHHHTTCTTTEE
T ss_pred chhHHHHHHHHHHCCc-eEEEEeCCCChHHHHHHHHHcCcHhhcc
Confidence 4788899999999999 588888887 688888888888865453
No 112
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=75.65 E-value=13 Score=25.02 Aligned_cols=59 Identities=8% Similarity=-0.070 Sum_probs=45.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc----------hHhHhhCCc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL----------EFTKKLGVE 64 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~----------~~~k~~G~~ 64 (109)
.|+..+.++++++.|+ .++.+|..+......+.+..++..- ..+.+|..+ .+.+.+|+.
T Consensus 112 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~ 182 (240)
T 3sd7_A 112 YENMKEILEMLYKNGK-ILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVK 182 (240)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCC
T ss_pred CccHHHHHHHHHHCCC-eEEEEeCCcHHHHHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCC
Confidence 5778888999999999 6999999899889999988887532 455566332 466777776
No 113
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A
Probab=74.03 E-value=4.9 Score=26.98 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=34.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.++++|+ .+..+|.........+.+.+++.
T Consensus 88 ~~g~~~~l~~L~~~g~-~~~i~T~~~~~~~~~~l~~~gl~ 126 (225)
T 1nnl_A 88 TPGIRELVSRLQERNV-QVFLISGGFRSIVEHVASKLNIP 126 (225)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHTTCC
T ss_pred CccHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHHcCCC
Confidence 5788889999999999 69999999999999999999885
No 114
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}
Probab=72.14 E-value=9.7 Score=24.57 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=44.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecC--Cc--------hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADP--NL--------EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~--~~--------~~~k~~G~~~ 65 (109)
.|+..+.++++++.|+ .++.+|..+......+.+.+++..- ..+.+|. .+ .+.+.+|+..
T Consensus 91 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 162 (214)
T 3e58_A 91 FPDVLKVLNEVKSQGL-EIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQA 162 (214)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCCG
T ss_pred CchHHHHHHHHHHCCC-CEEEEeCCcHHHHHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCCh
Confidence 4677788899999999 7999999999999999998887542 3455552 11 3667778753
No 115
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=69.88 E-value=10 Score=25.14 Aligned_cols=47 Identities=6% Similarity=-0.014 Sum_probs=35.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH---HHHHHHHHhcCCCCce--EEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA---FVMEAWCRKNNAEGKI--RFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~---f~~~aW~~~~~~~~~i--~~lsD 52 (109)
.|+..+.++++++.|+ .++.+|..+. .......+.+++..-| .+.++
T Consensus 36 ~~g~~~~L~~L~~~g~-~~~i~Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~ 87 (189)
T 3ib6_A 36 RKNAKETLEKVKQLGF-KQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASN 87 (189)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHHTTCGGGEEEEEECC
T ss_pred CcCHHHHHHHHHHCCC-EEEEEECCCccchHHHHHHHHhcCchhheEEEEEcc
Confidence 5788889999999999 6888887664 6777778888875434 34444
No 116
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure, structural genomics, NPPSFA; HET: MSE GOL; 1.73A {Thermotoga maritima MSB8} PDB: 3kbb_A*
Probab=68.52 E-value=11 Score=24.27 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=43.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecC------Cc----hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADP------NL----EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~------~~----~~~k~~G~~~ 65 (109)
.|+..+.++++++.|+ .++.+|..+......+.+..++..- ..+.+|. ++ .+.+.+|+..
T Consensus 86 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 157 (216)
T 2pib_A 86 NPGVREALEFVKSKRI-KLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVP 157 (216)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCG
T ss_pred CcCHHHHHHHHHHCCC-CEEEEeCCcHHhHHHHHHhcChHHhcCEEeecccCCCCCcCcHHHHHHHHHcCCCC
Confidence 5778888999999999 7999999999989999988887532 3444442 11 3566677643
No 117
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=66.95 E-value=10 Score=24.27 Aligned_cols=38 Identities=18% Similarity=0.023 Sum_probs=31.2
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|.-.+.++++++.|+ .++.+|.++......+.+.+++.
T Consensus 39 ~~~~~~l~~l~~~g~-~~~i~T~~~~~~~~~~l~~~gl~ 76 (162)
T 2p9j_A 39 VLDGIGIKLLQKMGI-TLAVISGRDSAPLITRLKELGVE 76 (162)
T ss_dssp HHHHHHHHHHHTTTC-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHCCC-EEEEEeCCCcHHHHHHHHHcCCH
Confidence 334577888999999 69999998888888888888875
No 118
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A
Probab=66.58 E-value=12 Score=25.14 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=33.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|..+......+.+..++.
T Consensus 85 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~gl~ 123 (222)
T 2nyv_A 85 YPEIPYTLEALKSKGF-KLAVVSNKLEELSKKILDILNLS 123 (222)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHcCCH
Confidence 4778888999999999 69999998888888898888864
No 119
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=66.35 E-value=12 Score=24.99 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=34.9
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCCCceEEeec
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAEGKIRFLAD 52 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~~~i~~lsD 52 (109)
..|+..+.+.+++++|+ .|+..|.-+ ......|.+.+++. +.+++.
T Consensus 25 ~~~~~~~al~~l~~~G~-~iii~TgR~~~~~~~~~~~l~~~gi~--~~~I~~ 73 (142)
T 2obb_A 25 EIPFAVETLKLLQQEKH-RLILWSVREGELLDEAIEWCRARGLE--FYAANK 73 (142)
T ss_dssp BCTTHHHHHHHHHHTTC-EEEECCSCCHHHHHHHHHHHHTTTCC--CSEESS
T ss_pred cCHHHHHHHHHHHHCCC-EEEEEeCCCcccHHHHHHHHHHcCCC--eEEEEc
Confidence 45788899999999999 566666554 67788899998885 555554
No 120
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Probab=65.78 E-value=15 Score=24.75 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=33.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+.+++..
T Consensus 107 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~ 146 (240)
T 2no4_A 107 YPDAAETLEKLKSAGY-IVAILSNGNDEMLQAALKASKLDR 146 (240)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHhcCcHH
Confidence 3788888999999999 688899888888888888888743
No 121
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*
Probab=65.68 E-value=14 Score=24.32 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=33.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++.
T Consensus 72 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~ 110 (205)
T 3m9l_A 72 APGAVELVRELAGRGY-RLGILTRNARELAHVTLEAIGLA 110 (205)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHTTCG
T ss_pred CccHHHHHHHHHhcCC-eEEEEeCCchHHHHHHHHHcCch
Confidence 4677888899999999 69999999999999999888874
No 122
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0
Probab=64.99 E-value=6.5 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=35.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|+ .++.+|.........+.+..++..
T Consensus 77 ~~~~~~~l~~l~~~g~-~~~i~S~~~~~~~~~~l~~~gl~~ 116 (217)
T 3m1y_A 77 FEGALELVSALKEKNY-KVVCFSGGFDLATNHYRDLLHLDA 116 (217)
T ss_dssp CBTHHHHHHHHHTTTE-EEEEEEEEEHHHHHHHHHHHTCSE
T ss_pred CCCHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHHcCcch
Confidence 5778888999999999 799999999999999999998854
No 123
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=64.79 E-value=19 Score=22.07 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=23.9
Q ss_pred cCCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEEe
Q psy5401 52 DPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIE 93 (109)
Q Consensus 52 D~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v~ 93 (109)
|.+.++++.||+.... |- =..+++| +|++.+....
T Consensus 75 ~~~~~l~~~~~v~~~~---~~----Pt~~~~d~~G~~~~~~~g 110 (133)
T 3fk8_A 75 DRNLELSQAYGDPIQD---GI----PAVVVVNSDGKVRYTTKG 110 (133)
T ss_dssp TSSHHHHHHTTCGGGG---CS----SEEEEECTTSCEEEECCS
T ss_pred cchHHHHHHhCCccCC---cc----ceEEEECCCCCEEEEecC
Confidence 7889999999984211 21 1457777 9999877544
No 124
>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*
Probab=63.42 E-value=5.8 Score=29.93 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=33.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
.|+..+.++.+++.|+ +|+.||.-..+..+.|++..
T Consensus 145 ~~~~~~l~~~l~~~G~-~v~ivSas~~~~v~~~a~~~ 180 (327)
T 4as2_A 145 FSGQRELYNKLMENGI-EVYVISAAHEELVRMVAADP 180 (327)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhhc
Confidence 5778999999999999 69999999999999999874
No 125
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=62.94 E-value=12 Score=29.28 Aligned_cols=54 Identities=20% Similarity=0.150 Sum_probs=41.3
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeec--CCchHhH
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD--PNLEFTK 59 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD--~~~~~~k 59 (109)
.+.+-.+...+|.++|+| |+=+++++....++..+-.... .+|+++| .+.+++.
T Consensus 44 D~~atv~Qi~~l~~aG~d-iVRvavp~~~~a~al~~I~~~~-~vPlvaDiHf~~~lal 99 (366)
T 3noy_A 44 DVEATLNQIKRLYEAGCE-IVRVAVPHKEDVEALEEIVKKS-PMPVIADIHFAPSYAF 99 (366)
T ss_dssp CHHHHHHHHHHHHHTTCC-EEEEECCSHHHHHHHHHHHHHC-SSCEEEECCSCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC-EEEeCCCChHHHHHHHHHHhcC-CCCEEEeCCCCHHHHH
Confidence 355667889999999996 9999999988877776543222 2899999 5776663
No 126
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Probab=62.84 E-value=18 Score=24.00 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=32.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++.
T Consensus 97 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~l~ 135 (232)
T 1zrn_A 97 FSEVPDSLRELKRRGL-KLAILSNGSPQSIDAVVSHAGLR 135 (232)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTTCG
T ss_pred CccHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHhcChH
Confidence 3777888899999999 68888888888888888888874
No 127
>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}
Probab=60.83 E-value=19 Score=23.69 Aligned_cols=60 Identities=8% Similarity=0.046 Sum_probs=43.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc----------hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL----------EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~----------~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++..- ..+-+|..+ .+.+.+|+..
T Consensus 98 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 169 (230)
T 3um9_A 98 FADVPQALQQLRAAGL-KTAILSNGSRHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDTLHLGE 169 (230)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHhCCC-eEEEEeCCCHHHHHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHHhCCCc
Confidence 5778888999999999 6999999998888888888776432 344454221 4566777653
No 128
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}
Probab=60.25 E-value=14 Score=24.57 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=43.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCC----------chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPN----------LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~----------~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++..- ..+.++.. ..+.+.+|+..
T Consensus 105 ~~~~~~~l~~l~~~g~-~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~ 176 (231)
T 3kzx_A 105 NDGAIELLDTLKENNI-TMAIVSNKNGERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEP 176 (231)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHTCCC
T ss_pred CcCHHHHHHHHHHCCC-eEEEEECCCHHHHHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHHcCCCc
Confidence 4777888899999999 6999999988888899888887532 34445421 14556677644
No 129
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=60.16 E-value=21 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.254 Sum_probs=30.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH---------------HHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA---------------FVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~---------------f~~~aW~~~~~~~ 44 (109)
.|+..+.+++++++|+ .++.+|.++. .......+.+++.
T Consensus 52 ~pg~~e~L~~L~~~G~-~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 105 (211)
T 2gmw_A 52 IDGVIDAMRELKKMGF-ALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD 105 (211)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHCCC-eEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc
Confidence 5888899999999999 6888888883 4555666677764
No 130
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}
Probab=60.04 E-value=11 Score=27.88 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=35.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.++++|+ .++.+|.+.......+.+.+|+..
T Consensus 181 ~pg~~e~L~~Lk~~G~-~v~IvSn~~~~~~~~~l~~lgl~~ 220 (317)
T 4eze_A 181 SPGLLTILPVIKAKGF-KTAIISGGLDIFTQRLKARYQLDY 220 (317)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHHTCSE
T ss_pred CcCHHHHHHHHHhCCC-EEEEEeCccHHHHHHHHHHcCCCe
Confidence 4788888999999999 799999999999999999999853
No 131
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Probab=59.62 E-value=16 Score=26.07 Aligned_cols=59 Identities=25% Similarity=0.179 Sum_probs=42.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce-EEeecCCchHhHhhCCc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI-RFLADPNLEFTKKLGVE 64 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i-~~lsD~~~~~~k~~G~~ 64 (109)
.|+..+.++.+++.|+ .+..+|.++......+.+.+++..-| .++.++.....+.++..
T Consensus 165 ~~g~~~~l~~L~~~g~-~~~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~K~~~~~~l~~~ 224 (287)
T 3a1c_A 165 KESAKPAVQELKRMGI-KVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK 224 (287)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCSEEECSCCTTCHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHhCCceeeeecChHHHHHHHHHHhcC
Confidence 4777888999999999 79999999999899999988875312 12223344555666654
No 132
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6
Probab=59.08 E-value=20 Score=24.49 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=33.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++++++.|+ .++.+|..+......+.+.+++..
T Consensus 116 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~gl~~ 155 (243)
T 2hsz_A 116 YPNVKETLEALKAQGY-ILAVVTNKPTKHVQPILTAFGIDH 155 (243)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHCCC-EEEEEECCcHHHHHHHHHHcCchh
Confidence 3777888899999999 688899888888888888888643
No 133
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=57.70 E-value=14 Score=29.14 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=39.4
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh------cCCCCceEEeec--CCchHh
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK------NNAEGKIRFLAD--PNLEFT 58 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~------~~~~~~i~~lsD--~~~~~~ 58 (109)
.+.+=.+...+|.+.|.| |+=|++++.-..+|..+- .+.. +|+++| .+.+++
T Consensus 36 Dv~aTv~QI~~L~~aG~e-iVRvaVp~~~~A~al~~I~~~l~~~~~~--vPLVADiHF~~~~a 95 (406)
T 4g9p_A 36 DVEATTAQVLELHRAGSE-IVRLTVNDEEAAKAVPEIKRRLLAEGVE--VPLVGDFHFNGHLL 95 (406)
T ss_dssp CHHHHHHHHHHHHHHTCS-EEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECCSSHHHH
T ss_pred cHHHHHHHHHHHHHcCCC-EEEEecCCHHHHHhHHHHHHHHHhcCCC--CceEeeecccHHHH
Confidence 344556778889999995 999999999999998642 2443 999999 454444
No 134
>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}
Probab=56.54 E-value=21 Score=26.24 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=33.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH----HHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA----FVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~----f~~~aW~~~~~~~~ 45 (109)
+|+-.+.+..++++|+ .|+.||..+. -....|.+.+|+..
T Consensus 103 ~pg~~ell~~L~~~G~-~i~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (260)
T 3pct_A 103 IPGAVEFSNYVNANGG-TMFFVSNRRDDVEKAGTVDDMKRLGFTG 146 (260)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEETTTSHHHHHHHHHHHTCCC
T ss_pred CccHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcCcCc
Confidence 5777888999999999 6988886644 58889999999864
No 135
>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}
Probab=56.29 E-value=16 Score=23.61 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=33.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .++.+|.+.........+..++.
T Consensus 84 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~~~~~~~~ 122 (219)
T 3kd3_A 84 TDGIKELVQDLKNKGF-EIWIFSGGLSESIQPFADYLNIP 122 (219)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHHTCC
T ss_pred ChhHHHHHHHHHHCCC-eEEEEcCCcHHHHHHHHHHcCCC
Confidence 4677888899999999 69999999999999999988884
No 136
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=55.72 E-value=6.5 Score=23.98 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=29.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.+.++++.|+ .++.+|..+......+.+..++.
T Consensus 20 ~~~~~~~l~~L~~~G~-~~~i~S~~~~~~~~~~l~~~~l~ 58 (137)
T 2pr7_A 20 QRRWRNLLAAAKKNGV-GTVILSNDPGGLGAAPIRELETN 58 (137)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEECSCCGGGGHHHHHHHHT
T ss_pred CccHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHCChH
Confidence 3667788899999999 68888888777666666666543
No 137
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=55.41 E-value=30 Score=20.52 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=21.2
Q ss_pred ecCCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEE
Q psy5401 51 ADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNI 92 (109)
Q Consensus 51 sD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v 92 (109)
.|.+.++++.||+..- . ..+++.+|++.+...
T Consensus 57 ~~~~~~l~~~~~v~~~-----P-----t~~~~~~G~~~~~~~ 88 (112)
T 2voc_A 57 VDENQETAGKYGVMSI-----P-----TLLVLKDGEVVETSV 88 (112)
T ss_dssp TTTCCSHHHHTTCCSB-----S-----EEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHcCCCcc-----c-----EEEEEeCCEEEEEEe
Confidence 4667889999987421 1 334448999876554
No 138
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Probab=54.53 E-value=26 Score=24.15 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=32.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|...+.+.+++++|+ .++.+|-+++.....+.+.+++.
T Consensus 25 ~~~~~~l~~l~~~g~-~~~i~TGr~~~~~~~~~~~l~~~ 62 (227)
T 1l6r_A 25 TKAIESIRSAEKKGL-TVSLLSGNVIPVVYALKIFLGIN 62 (227)
T ss_dssp HHHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCC-EEEEECCCCcHHHHHHHHHhCCC
Confidence 456788899999999 69889999999999999888875
No 139
>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}
Probab=53.46 E-value=24 Score=23.27 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=36.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.++.+++.|+ .++.+|..+........+..++..- ..+.+|
T Consensus 101 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~ 149 (233)
T 3umb_A 101 FPENVPVLRQLREMGL-PLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVD 149 (233)
T ss_dssp CTTHHHHHHHHHTTTC-CEEEEESSCHHHHHHHHHTTTCTTTCSEEEEGG
T ss_pred CCCHHHHHHHHHhCCC-cEEEEeCCCHHHHHHHHHHCCcHhhcCEEEEec
Confidence 4777888899999999 5999999998888888888887542 344454
No 140
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=53.33 E-value=18 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=43.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc----------hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL----------EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~----------~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++..- ..+.+|..+ .+.+.+|+..
T Consensus 106 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~ 177 (237)
T 4ex6_A 106 YPGVLEGLDRLSAAGF-RLAMATSKVEKAARAIAELTGLDTRLTVIAGDDSVERGKPHPDMALHVARGLGIPP 177 (237)
T ss_dssp CTTHHHHHHHHHHTTE-EEEEECSSCHHHHHHHHHHHTGGGTCSEEECTTTSSSCTTSSHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHhCCC-cEEEEcCCChHHHHHHHHHcCchhheeeEEeCCCCCCCCCCHHHHHHHHHHcCCCH
Confidence 5777888899999999 6999999998888888888876432 344555211 4667777753
No 141
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=52.39 E-value=26 Score=23.05 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=30.8
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.-.+.+.++++.|+ .++.+|.+.........+.+++.
T Consensus 39 ~~~~~l~~L~~~G~-~~~i~Tg~~~~~~~~~~~~lgl~ 75 (180)
T 1k1e_A 39 RDGLGIKMLMDADI-QVAVLSGRDSPILRRRIADLGIK 75 (180)
T ss_dssp HHHHHHHHHHHTTC-EEEEEESCCCHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHCCC-eEEEEeCCCcHHHHHHHHHcCCc
Confidence 34567888999999 69999999888888888888875
No 142
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=52.03 E-value=16 Score=26.24 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=34.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
-|++.+.+..+++.|+ .++.+|-+-....++.++..+..
T Consensus 143 ~~g~~e~i~~l~~~gi-~v~ivSgg~~~~i~~i~~~~g~~ 181 (297)
T 4fe3_A 143 KEGYENFFGKLQQHGI-PVFIFSAGIGDVLEEVIRQAGVY 181 (297)
T ss_dssp CBTHHHHHHHHHHTTC-CEEEEEEEEHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHcCC-eEEEEeCCcHHHHHHHHHHcCCC
Confidence 3788899999999999 59999999999999999998864
No 143
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=50.63 E-value=23 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=30.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecC---------------CHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVN---------------DAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~d---------------d~f~~~aW~~~~~~~ 44 (109)
.|+..+.+.++++.|+ .++.+|.. .........+.+++.
T Consensus 44 ~pg~~e~L~~L~~~G~-~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 97 (176)
T 2fpr_A 44 EPGVIPQLLKLQKAGY-KLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ 97 (176)
T ss_dssp CTTHHHHHHHHHHTTE-EEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CccHHHHHHHHHHCCC-EEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCC
Confidence 5788889999999999 68888877 355666677777875
No 144
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}
Probab=49.74 E-value=21 Score=26.01 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=34.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++++++.|+ .++.+|.+.........+..++.
T Consensus 180 ~pg~~~~l~~L~~~g~-~~~ivS~~~~~~~~~~~~~lgl~ 218 (335)
T 3n28_A 180 MPELPELVATLHAFGW-KVAIASGGFTYFSDYLKEQLSLD 218 (335)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHHTCS
T ss_pred CcCHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHcCCC
Confidence 4777888999999999 79999999999999999999885
No 145
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=49.04 E-value=35 Score=20.67 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=22.4
Q ss_pred EEeecCCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEE
Q psy5401 48 RFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNI 92 (109)
Q Consensus 48 ~~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v 92 (109)
.+=.|.+.++++.||+.. . + ..+++++|++.+...
T Consensus 71 ~vd~d~~~~~~~~~~v~~----~-P-----t~~~~~~G~~~~~~~ 105 (121)
T 2j23_A 71 KVDVDEQSQIAQEVGIRA----M-P-----TFVFFKNGQKIDTVV 105 (121)
T ss_dssp EEETTTCHHHHHHHTCCS----S-S-----EEEEEETTEEEEEEE
T ss_pred EEECcCCHHHHHHcCCCc----c-c-----EEEEEECCeEEeeEc
Confidence 344567889999999752 1 1 234447998876544
No 146
>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A
Probab=48.43 E-value=26 Score=25.76 Aligned_cols=40 Identities=10% Similarity=0.139 Sum_probs=33.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH----HHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA----FVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~----f~~~aW~~~~~~~~ 45 (109)
+|+-.+.++.++++|+ .|+.||..+. -....|.+.+|+..
T Consensus 103 ~pG~~ell~~L~~~G~-ki~ivTgR~~~~~r~~T~~~L~~lGi~~ 146 (262)
T 3ocu_A 103 VPGAVEFNNYVNSHNG-KVFYVTNRKDSTEKSGTIDDMKRLGFNG 146 (262)
T ss_dssp CTTHHHHHHHHHHTTE-EEEEEEEEETTTTHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHCCC-eEEEEeCCCccchHHHHHHHHHHcCcCc
Confidence 5778888999999999 6988886643 58889999999874
No 147
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=48.32 E-value=24 Score=26.64 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=35.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.+..+++.|+ .+..+|.+.......+.+.+|+.
T Consensus 258 ~pg~~e~l~~Lk~~G~-~~~ivS~~~~~~~~~~~~~lgl~ 296 (415)
T 3p96_A 258 MPGARTTLRTLRRLGY-ACGVVSGGFRRIIEPLAEELMLD 296 (415)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHTTCS
T ss_pred CccHHHHHHHHHHCCC-EEEEEcCCcHHHHHHHHHHcCcc
Confidence 5788888999999999 79999999999999999999985
No 148
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Probab=47.48 E-value=48 Score=21.32 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=41.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCC----------chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPN----------LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~----------~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .++.+|.+.......+.+.+++... ..+.++.. ..+.+.+|+..
T Consensus 96 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~i~~ 167 (226)
T 1te2_A 96 LPGVREAVALCKEQGL-LVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDP 167 (226)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSCG
T ss_pred CccHHHHHHHHHHCCC-cEEEEeCCcHHHHHHHHHhcCcHhhCcEEEeccccCCCCCChHHHHHHHHHcCCCH
Confidence 4667777888899999 6888898888888888888776432 34444421 13556777653
No 149
>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Probab=47.16 E-value=56 Score=21.18 Aligned_cols=41 Identities=10% Similarity=0.038 Sum_probs=34.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
.|+..+.++.+++. + .++.+|.........+.+.+++..-|
T Consensus 71 ~~g~~~~l~~l~~~-~-~~~i~s~~~~~~~~~~l~~~gl~~~f 111 (206)
T 1rku_A 71 LEGAVEFVDWLRER-F-QVVILSDTFYEFSQPLMRQLGFPTLL 111 (206)
T ss_dssp CTTHHHHHHHHHTT-S-EEEEEEEEEHHHHHHHHHHTTCCCEE
T ss_pred CccHHHHHHHHHhc-C-cEEEEECChHHHHHHHHHHcCCccee
Confidence 57788888999988 7 79999999999999999999886534
No 150
>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19
Probab=47.05 E-value=18 Score=24.50 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=30.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH---------------HHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA---------------FVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~---------------f~~~aW~~~~~~~ 44 (109)
.|+..+.+++++++|+ .++.+|.++. .......+.+++.
T Consensus 58 ~~g~~e~L~~L~~~G~-~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 111 (218)
T 2o2x_A 58 RPQMLPAIATANRAGI-PVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVF 111 (218)
T ss_dssp CGGGHHHHHHHHHHTC-CEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHCCC-EEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCc
Confidence 5788889999999999 5888888776 4556666777753
No 151
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*
Probab=46.78 E-value=36 Score=23.20 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=33.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|.+.......+.+..++.
T Consensus 146 ~~~~~~~l~~l~~~g~-~~~i~T~~~~~~~~~~~~~~gl~ 184 (280)
T 3skx_A 146 RPESREAISKLKAIGI-KCMMLTGDNRFVAKWVAEELGLD 184 (280)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCS
T ss_pred CHhHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCh
Confidence 3777888899999999 69889999999999998888874
No 152
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=46.33 E-value=24 Score=23.17 Aligned_cols=59 Identities=10% Similarity=-0.018 Sum_probs=43.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeecCCc----------hHhHhhCCc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNL----------EFTKKLGVE 64 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD~~~----------~~~k~~G~~ 64 (109)
.|+..+.++.+++.|+ .+..+|..+......+.+..++..- ..+.+|..+ .+.+.+|+.
T Consensus 88 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~ 158 (226)
T 3mc1_A 88 YDGIEALLSSLKDYGF-HLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIK 158 (226)
T ss_dssp CTTHHHHHHHHHHHTC-EEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCcC
Confidence 5778888899999999 6999999888888888888887532 345555322 366777775
No 153
>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}
Probab=46.26 E-value=48 Score=21.63 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=36.8
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
..|+..+.++.+++.|+ .+..+|..+........+..++.+- ..+.||
T Consensus 85 ~~pg~~~~l~~L~~~g~-~~~i~tn~~~~~~~~~l~~~~l~~~fd~~~~~~ 134 (216)
T 3kbb_A 85 ENPGVREALEFVKSKRI-KLALATSTPQREALERLRRLDLEKYFDVMVFGD 134 (216)
T ss_dssp BCTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHTTCGGGCSEEECGG
T ss_pred cCccHHHHHHHHHHcCC-CcccccCCcHHHHHHHHHhcCCCcccccccccc
Confidence 46888899999999999 6888888888777777788887542 345555
No 154
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}
Probab=46.22 E-value=52 Score=21.38 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=40.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCCCc--eEEeec------CC----chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAEGK--IRFLAD------PN----LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~~~--i~~lsD------~~----~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .+..+|..+ ......+.+..++..- ..+.+| |+ ..+.+.+|+..
T Consensus 101 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~ 175 (235)
T 2om6_A 101 LEGTKEALQFVKERGL-KTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKP 175 (235)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEECCCSSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHHHHHHHTTCCG
T ss_pred CccHHHHHHHHHHCCC-EEEEEcCCcccchhHHHHHHHhCCcHHHhhhheeccccCCCCCCHHHHHHHHHHcCCCc
Confidence 4677778888999999 688888877 7777778887776432 344444 12 13567778753
No 155
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}
Probab=46.18 E-value=36 Score=22.79 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=34.9
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.++.+++.|+ .++.+|..+......+.+..++..- ..+.+|
T Consensus 96 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~ 144 (241)
T 2hoq_A 96 VPGARKVLIRLKELGY-ELGIITDGNPVKQWEKILRLELDDFFEHVIISD 144 (241)
T ss_dssp CTTHHHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHTTCGGGCSEEEEGG
T ss_pred CccHHHHHHHHHHCCC-EEEEEECCCchhHHHHHHHcCcHhhccEEEEeC
Confidence 4777888889999999 6888888787777778888887532 344444
No 156
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Probab=45.76 E-value=25 Score=23.87 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=32.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++++++.|+ .++.+|..+......+.+..++.
T Consensus 112 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~~l~ 150 (259)
T 4eek_A 112 IEGAAETLRALRAAGV-PFAIGSNSERGRLHLKLRVAGLT 150 (259)
T ss_dssp CTTHHHHHHHHHHHTC-CEEEECSSCHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHhcChH
Confidence 5677788889999999 59999999998888888888764
No 157
>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}
Probab=45.48 E-value=28 Score=22.87 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 12 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+++++++|+ .+..+|.+.....+...+.+++.
T Consensus 48 l~~L~~~g~-~~~i~T~~~~~~~~~~~~~lgi~ 79 (176)
T 3mmz_A 48 IAALRKSGL-TMLILSTEQNPVVAARARKLKIP 79 (176)
T ss_dssp HHHHHHTTC-EEEEEESSCCHHHHHHHHHHTCC
T ss_pred HHHHHHCCC-eEEEEECcChHHHHHHHHHcCCe
Confidence 678888999 68888888888888888888874
No 158
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=45.46 E-value=23 Score=23.51 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=28.3
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.++++++.|+ .++.+|.++......+.+.+++.
T Consensus 61 ~l~~L~~~g~-~v~ivT~~~~~~~~~~l~~lgl~ 93 (188)
T 2r8e_A 61 GIRCALTSDI-EVAIITGRKAKLVEDRCATLGIT 93 (188)
T ss_dssp HHHHHHTTTC-EEEEECSSCCHHHHHHHHHHTCC
T ss_pred HHHHHHHCCC-eEEEEeCCChHHHHHHHHHcCCc
Confidence 3778888999 79999999988899999888875
No 159
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=44.81 E-value=33 Score=22.08 Aligned_cols=37 Identities=8% Similarity=0.087 Sum_probs=28.2
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|....+.|++.|. .++||+.-++-.+++|+...|+.
T Consensus 62 dl~~L~~~l~~~gl-~~vGV~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 62 NWPELHKIVTSTGL-RIIGVSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp CHHHHHHHHHTTTC-EEEEEESCCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCC-EEEEEeCCCcHHHHHHHHHCCCC
Confidence 56677778888888 78898887666677888777763
No 160
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Probab=49.83 E-value=4.8 Score=28.68 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=40.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce-EEeecCCchHhHhhCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI-RFLADPNLEFTKKLGV 63 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i-~~lsD~~~~~~k~~G~ 63 (109)
.|+..+.+++|++.|+ .++.+|.|+........+..|+..-| .++.+......+.++.
T Consensus 138 ~~g~~~~l~~L~~~g~-~~~i~T~~~~~~~~~~~~~~gl~~~f~~~~p~~k~~~~~~l~~ 196 (263)
T 2yj3_A 138 RPNLKDYLEKLKNEGL-KIIILSGDKEDKVKELSKELNIQEYYSNLSPEDKVRIIEKLKQ 196 (263)
Confidence 3666677888999999 59999999999888888888875322 2334444445555554
No 161
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6
Probab=43.08 E-value=38 Score=22.19 Aligned_cols=40 Identities=10% Similarity=-0.045 Sum_probs=33.1
Q ss_pred chhHHHcHHHHHhC-CCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAK-GIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~-Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++. |+ .+..+|.........+.+..++..
T Consensus 95 ~~~~~~~l~~l~~~~g~-~~~i~t~~~~~~~~~~l~~~~l~~ 135 (234)
T 2hcf_A 95 LEGVRELLDALSSRSDV-LLGLLTGNFEASGRHKLKLPGIDH 135 (234)
T ss_dssp CTTHHHHHHHHHTCTTE-EEEEECSSCHHHHHHHHHTTTCST
T ss_pred CCCHHHHHHHHHhCCCc-eEEEEcCCcHHHHHHHHHHCCchh
Confidence 46778888999998 99 688888888888888888888754
No 162
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=41.50 E-value=51 Score=20.72 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=39.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeecC------C----chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLADP------N----LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD~------~----~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .++.+|.+...... ..+..++..-+ .+.++. + ..+.+.+|+..
T Consensus 87 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~ 157 (207)
T 2go7_A 87 MPGAREVLAWADESGI-QQFIYTHKGNNAFT-ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNS 157 (207)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCTHHHH-HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCG
T ss_pred CcCHHHHHHHHHHCCC-eEEEEeCCchHHHH-HHHHcCchhheeeEEecCcCCCCCCCcHHHHHHHHHhCCCc
Confidence 4677788889999999 68888888877777 77777764323 333331 1 13567777653
No 163
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20
Probab=40.52 E-value=17 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=29.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCR 39 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~ 39 (109)
.|+..+.++.+++.|+ .++.+|.........+.+
T Consensus 79 ~pg~~~~l~~L~~~g~-~~~ivS~~~~~~~~~~l~ 112 (236)
T 2fea_A 79 REGFREFVAFINEHEI-PFYVISGGMDFFVYPLLE 112 (236)
T ss_dssp CTTHHHHHHHHHHHTC-CEEEEEEEEHHHHHHHHT
T ss_pred CccHHHHHHHHHhCCC-eEEEEeCCcHHHHHHHHh
Confidence 5788889999999999 599999998888888887
No 164
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=40.36 E-value=46 Score=21.48 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=40.6
Q ss_pred chhHHHcHHHHHhCC-CCEEEEEecCCHHHHHHHHHhcCCCCc---eEEeecCCch----HhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKG-IHEIFCIAVNDAFVMEAWCRKNNAEGK---IRFLADPNLE----FTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~G-vd~V~~iS~dd~f~~~aW~~~~~~~~~---i~~lsD~~~~----~~k~~G~~~ 65 (109)
.|+..+.++.+++.| + .++.+|..+......+.+..++..- +...+.|+++ +.+.+|+..
T Consensus 107 ~~~~~~~l~~l~~~g~~-~~~i~t~~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~ 174 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKY-KLVVATKGDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAP 174 (234)
T ss_dssp CTTHHHHHHHHHHHCCC-EEEEEEESCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCG
T ss_pred CccHHHHHHHHHhCCCe-EEEEEeCCchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCc
Confidence 466777788888888 8 6888888888777777777776432 2223345553 566677743
No 165
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=40.29 E-value=43 Score=21.53 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=32.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.+++.|+ .++.+|.+.......+.+..++..
T Consensus 91 ~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~~~~~~~~~ 130 (225)
T 3d6j_A 91 FPDTLPTLTHLKKQGI-RIGIISTKYRFRILSFLRNHMPDD 130 (225)
T ss_dssp CTTHHHHHHHHHHHTC-EEEEECSSCHHHHHHHHHTSSCTT
T ss_pred CcCHHHHHHHHHHCCC-eEEEEECCCHHHHHHHHHHcCchh
Confidence 4667777888888899 688888888888888888877643
No 166
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=40.12 E-value=19 Score=21.51 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=11.8
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
.++++| +|+|.|++
T Consensus 17 gviv~D~~g~I~~~N 31 (121)
T 4hi4_A 17 NVMIADNDLNIIYMN 31 (121)
T ss_dssp EEEEEETTCBEEEEC
T ss_pred cEEEEcCCCeEEEec
Confidence 567889 99999985
No 167
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}
Probab=40.01 E-value=27 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.145 Sum_probs=28.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++++++.|+ .+..+|..+. ....+.+..++.
T Consensus 97 ~~~~~~~l~~l~~~g~-~~~i~Tn~~~-~~~~~l~~~gl~ 134 (220)
T 2zg6_A 97 YDDTLEFLEGLKSNGY-KLALVSNASP-RVKTLLEKFDLK 134 (220)
T ss_dssp CTTHHHHHHHHHTTTC-EEEECCSCHH-HHHHHHHHHTCG
T ss_pred CcCHHHHHHHHHHCCC-EEEEEeCCcH-HHHHHHHhcCcH
Confidence 4778888999999999 5777776554 467777877864
No 168
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=39.24 E-value=37 Score=22.71 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 12 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
++.++++|+ .+..+|.++........+.+++.
T Consensus 55 l~~L~~~g~-~~~ivTn~~~~~~~~~l~~lgl~ 86 (191)
T 3n1u_A 55 LKLLMAAGI-QVAIITTAQNAVVDHRMEQLGIT 86 (191)
T ss_dssp HHHHHHTTC-EEEEECSCCSHHHHHHHHHHTCC
T ss_pred HHHHHHCCC-eEEEEeCcChHHHHHHHHHcCCc
Confidence 788899999 79999999888888888888875
No 169
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}
Probab=39.00 E-value=48 Score=21.29 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=31.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.+..+++.| .++.+|..+......+.+.+++.
T Consensus 88 ~~~~~~~l~~l~~~g--~~~i~s~~~~~~~~~~l~~~~~~ 125 (200)
T 3cnh_A 88 RPEVLALARDLGQRY--RMYSLNNEGRDLNEYRIRTFGLG 125 (200)
T ss_dssp CHHHHHHHHHHTTTS--EEEEEECCCHHHHHHHHHHHTGG
T ss_pred CccHHHHHHHHHHcC--CEEEEeCCcHHHHHHHHHhCCHH
Confidence 477788888898888 48889988888888888887764
No 170
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A*
Probab=38.46 E-value=50 Score=23.54 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=25.5
Q ss_pred HhCCC-CEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhH
Q psy5401 16 KAKGI-HEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 59 (109)
Q Consensus 16 ~~~Gv-d~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k 59 (109)
++.|. ..|++=.+|++-.++.+. ..|.. -+++|.-..+.+
T Consensus 219 ~~~Glg~~V~~WTvn~~~~~~~l~-~~GVD---gIiTD~P~~~~~ 259 (285)
T 1xx1_A 219 SANGFINKIYYWSVDKVSTTKAAL-DVGVD---GIMTNYPNVLIG 259 (285)
T ss_dssp STTCCCCEEEEECCCSHHHHHHHH-HHTCS---EEEESCHHHHHH
T ss_pred HhcCCCCeEEEeeCCCHHHHHHHH-hcCCC---EEEeCCHHHHHH
Confidence 45565 148888999998887776 45664 356774444433
No 171
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=37.73 E-value=40 Score=20.33 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=21.0
Q ss_pred CCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEE
Q psy5401 53 PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 53 ~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v 92 (109)
.+..+++.||+.. . -..+++| +|++.+...
T Consensus 74 ~~~~~~~~~~v~~----~------Pt~~~~d~~G~~~~~~~ 104 (130)
T 2kuc_A 74 EGVELRKKYGVHA----Y------PTLLFINSSGEVVYRLV 104 (130)
T ss_dssp THHHHHHHTTCCS----S------CEEEEECTTSCEEEEEE
T ss_pred chHHHHHHcCCCC----C------CEEEEECCCCcEEEEec
Confidence 4678999998742 1 1457777 999887654
No 172
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3
Probab=37.45 E-value=73 Score=20.04 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=29.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
.|+..+.++.+++.|+ .++.+|.... ....+.+..++...|
T Consensus 84 ~~~~~~~l~~l~~~g~-~~~i~t~~~~-~~~~~l~~~~~~~~f 124 (190)
T 2fi1_A 84 FEGVSDLLEDISNQGG-RHFLVSHRND-QVLEILEKTSIAAYF 124 (190)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCT-HHHHHHHHTTCGGGE
T ss_pred CcCHHHHHHHHHHCCC-cEEEEECCcH-HHHHHHHHcCCHhhe
Confidence 4677788889999999 6888886654 456777777765434
No 173
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}
Probab=37.12 E-value=45 Score=22.40 Aligned_cols=60 Identities=20% Similarity=0.295 Sum_probs=39.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC-ceEEeecC------Cc----hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG-KIRFLADP------NL----EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~-~i~~lsD~------~~----~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .+..+|..+........+..++.. ...+-+|. +. .+++.+|+..
T Consensus 112 ~~g~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~~~l~~f~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~ 182 (240)
T 2hi0_A 112 FPGILDLMKNLRQKGV-KLAVVSNKPNEAVQVLVEELFPGSFDFALGEKSGIRRKPAPDMTSECVKVLGVPR 182 (240)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEHHHHHHHHHHHSTTTCSEEEEECTTSCCTTSSHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCcceeEEEecCCCCCCCCCHHHHHHHHHHcCCCH
Confidence 4677788888999999 688888777777777777777541 13444542 11 3566777753
No 174
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=37.05 E-value=44 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.232 Sum_probs=27.7
Q ss_pred HHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 12 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
++.++++|+ .+..+|.+.........+.+++.
T Consensus 61 l~~L~~~G~-~~~ivT~~~~~~~~~~l~~lgi~ 92 (195)
T 3n07_A 61 VKALMNAGI-EIAIITGRRSQIVENRMKALGIS 92 (195)
T ss_dssp HHHHHHTTC-EEEEECSSCCHHHHHHHHHTTCC
T ss_pred HHHHHHCCC-EEEEEECcCHHHHHHHHHHcCCc
Confidence 778899999 69999999888888888888875
No 175
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=36.84 E-value=61 Score=21.08 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=34.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD 52 (109)
.|+..+.+..++ .|+ .++.+|..+......+.+..++..- ..+.+|
T Consensus 109 ~~~~~~~l~~l~-~g~-~~~i~sn~~~~~~~~~l~~~~l~~~f~~~~~~~ 156 (240)
T 3qnm_A 109 MPHAKEVLEYLA-PQY-NLYILSNGFRELQSRKMRSAGVDRYFKKIILSE 156 (240)
T ss_dssp STTHHHHHHHHT-TTS-EEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGG
T ss_pred CccHHHHHHHHH-cCC-eEEEEeCCchHHHHHHHHHcChHhhceeEEEec
Confidence 466777788888 899 6999998888888888888776432 344444
No 176
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0
Probab=36.02 E-value=46 Score=22.38 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=40.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC---ceEEeecCCc----------hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG---KIRFLADPNL----------EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~---~i~~lsD~~~----------~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .+..+|..+......+.+..++.. ...+-+|..+ .+.+.+|+..
T Consensus 113 ~~~~~~~l~~l~~~g~-~~~i~tn~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~ 185 (277)
T 3iru_A 113 IPGWKEVFDKLIAQGI-KVGGNTGYGPGMMAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGH 185 (277)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHHHTTCCCSEEECGGGSSSCTTSSHHHHHHHHHHTCSC
T ss_pred CcCHHHHHHHHHHcCC-eEEEEeCCchHHHHHHHHhcCcccCCCceEecHHhcCCCCCCHHHHHHHHHHcCCCC
Confidence 5777788889999999 699999888888787777655432 1344444221 3556677654
No 177
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=35.81 E-value=68 Score=18.88 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHcHHHHHhCCCCEEEEEecCCHHH---HHHHHHhcCCC
Q psy5401 8 YLAKEKDLKAKGIHEIFCIAVNDAFV---MEAWCRKNNAE 44 (109)
Q Consensus 8 f~~~~~~f~~~Gvd~V~~iS~dd~f~---~~aW~~~~~~~ 44 (109)
++...+.+++...-+++.|-+|++-+ ..+|++..|..
T Consensus 24 vl~~kkal~~l~~G~~l~V~~dd~~a~~di~~~~~~~G~~ 63 (82)
T 3lvj_C 24 VMMVRKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHE 63 (82)
T ss_dssp HHHHHHHHHTSCTTCEEEEEECCTTHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHhCCCCCEEEEEECCccHHHHHHHHHHHCCCE
Confidence 45556666654333355555555443 77888887763
No 178
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=35.36 E-value=38 Score=21.48 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=26.6
Q ss_pred HHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 12 EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 12 ~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
++.+++.|+ .++.+|.++........+.+++.
T Consensus 40 l~~l~~~g~-~~~i~T~~~~~~~~~~~~~~gl~ 71 (164)
T 3e8m_A 40 IFWAHNKGI-PVGILTGEKTEIVRRRAEKLKVD 71 (164)
T ss_dssp HHHHHHTTC-CEEEECSSCCHHHHHHHHHTTCS
T ss_pred HHHHHHCCC-EEEEEeCCChHHHHHHHHHcCCC
Confidence 678888999 58888888888888888888875
No 179
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A
Probab=35.11 E-value=52 Score=22.70 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=31.6
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.++...+.+.+++++|+ .++.+|-.++.....+.+..++.
T Consensus 18 ~~~~~~~~l~~l~~~g~-~~~i~Tgr~~~~~~~~~~~~~~~ 57 (249)
T 2zos_A 18 EPDPAKPIIEELKDMGF-EIIFNSSKTRAEQEYYRKELEVE 57 (249)
T ss_dssp CSGGGHHHHHHHHHTTE-EEEEBCSSCHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCC
Confidence 35667788899999999 67777778888888888877764
No 180
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=34.95 E-value=49 Score=23.63 Aligned_cols=39 Identities=23% Similarity=0.265 Sum_probs=30.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCC---HHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVND---AFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd---~f~~~aW~~~~~~~ 44 (109)
+|+..+.++.++++|+ .|+.+|..+ ......+-+..|+.
T Consensus 103 ~pg~~e~L~~L~~~Gi-~i~iaTnr~~~~~~~~~~~L~~~Gl~ 144 (258)
T 2i33_A 103 LPGSIDFLKYTESKGV-DIYYISNRKTNQLDATIKNLERVGAP 144 (258)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEEEEGGGHHHHHHHHHHHTCS
T ss_pred CccHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHHHHHcCCC
Confidence 5788888999999999 687777766 44556666777775
No 181
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=34.51 E-value=19 Score=27.00 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=22.7
Q ss_pred CcchhH-HHcHHHHHhC-CCCEEEEEecCCH
Q psy5401 3 THLPGY-LAKEKDLKAK-GIHEIFCIAVNDA 31 (109)
Q Consensus 3 ~hlp~f-~~~~~~f~~~-Gvd~V~~iS~dd~ 31 (109)
.|-|.+ ...+..+++. || .|+++|.|++
T Consensus 204 ~H~m~~e~~al~~Lh~~g~v-~iynls~~S~ 233 (288)
T 2p2v_A 204 CHSKEYDIEALKLLKSIYKV-NIYALCDDSI 233 (288)
T ss_dssp TCCHHHHHHHHHHHHHHHTC-EEEECCTTSG
T ss_pred ccCCHHHHHHHHHHHHhcCc-eEEEcCCCch
Confidence 577777 6777888888 79 7999999875
No 182
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Probab=34.39 E-value=46 Score=21.29 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=29.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+..+.++.+++.|+ .+..+|.+..+....+.+..++.
T Consensus 79 ~~~~~~l~~l~~~g~-~~~i~T~~~~~~~~~~~~~~~~~ 116 (211)
T 1l7m_A 79 EGAEETIKELKNRGY-VVAVVSGGFDIAVNKIKEKLGLD 116 (211)
T ss_dssp TTHHHHHHHHHHTTE-EEEEEEEEEHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHCCC-EEEEEcCCcHHHHHHHHHHcCCC
Confidence 667778889999999 68777777777777777777764
No 183
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea, heterotetramer, RNA PROC endonuclease, hydrolase, tRNA processing; 1.70A {Pyrobaculum aerophilum}
Probab=33.81 E-value=32 Score=22.34 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=15.1
Q ss_pred eEEEEE-Ee-CCeEEEEEEecCC
Q psy5401 76 KRYSMV-VD-DGKITQLNIEPDG 96 (109)
Q Consensus 76 ~R~~fi-Vd-dG~V~~~~v~~~~ 96 (109)
+|.+|- || ||.|+|.+++...
T Consensus 84 K~~VlAiVd~dg~ItYy~v~~~~ 106 (116)
T 2zyz_A 84 MPVVLALVSNDGTVTYYYVRKIR 106 (116)
T ss_dssp CCEEEEEECTTSCEEEEEEEECC
T ss_pred eEEEEEEEcCCCCEEEEEEEEcc
Confidence 455554 56 8999999998643
No 184
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A
Probab=33.18 E-value=47 Score=22.03 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=27.4
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.+++++++|+ .+..+|.+......+..+.+++.
T Consensus 54 ~l~~L~~~g~-~~~i~T~~~~~~~~~~~~~lgl~ 86 (189)
T 3mn1_A 54 GIKMLIASGV-TTAIISGRKTAIVERRAKSLGIE 86 (189)
T ss_dssp HHHHHHHTTC-EEEEECSSCCHHHHHHHHHHTCS
T ss_pred HHHHHHHCCC-EEEEEECcChHHHHHHHHHcCCH
Confidence 4678889999 68889988888888888888874
No 185
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=33.03 E-value=30 Score=18.07 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=10.9
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
..+++| +|+|.+++
T Consensus 4 ~i~~~d~~g~i~~~N 18 (96)
T 3a0s_A 4 AIITLSKDGRITEWN 18 (96)
T ss_dssp EEEEEETTSBEEEEC
T ss_pred eEEEEcCCCCEeehh
Confidence 457788 99998875
No 186
>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A
Probab=32.99 E-value=11 Score=24.18 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=30.2
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .++.+|.+.......+ +.+++.
T Consensus 81 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~-~~~~~~ 118 (201)
T 4ap9_A 81 SPEARELVETLREKGF-KVVLISGSFEEVLEPF-KELGDE 118 (201)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEEEEETTTSGGG-TTTSSE
T ss_pred ChhHHHHHHHHHHCCC-eEEEEeCCcHHHHHHH-HHcCch
Confidence 4677788899999999 6888888877777777 777763
No 187
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}
Probab=32.73 E-value=85 Score=19.93 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
.|+..+.+.+++++|+ .+..+|..+.
T Consensus 29 ~~g~~~~l~~L~~~g~-~~~i~Tn~~~ 54 (179)
T 3l8h_A 29 LPGSLQAIARLTQADW-TVVLATNQSG 54 (179)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEEECTT
T ss_pred CcCHHHHHHHHHHCCC-EEEEEECCCc
Confidence 5788889999999999 6888887764
No 188
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13
Probab=32.70 E-value=70 Score=24.48 Aligned_cols=40 Identities=13% Similarity=-0.102 Sum_probs=31.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+.++.++++|+ .+..+|..+........+.+++..
T Consensus 217 ~pGv~elL~~Lk~~Gi-~laIvTn~~~~~~~~~L~~lgL~~ 256 (384)
T 1qyi_A 217 VDEVKVLLNDLKGAGF-ELGIATGRPYTETVVPFENLGLLP 256 (384)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCGG
T ss_pred CcCHHHHHHHHHhCCC-EEEEEeCCcHHHHHHHHHHcCChH
Confidence 6888999999999999 688888877766666667777643
No 189
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}
Probab=31.06 E-value=53 Score=21.20 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=27.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 40 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~ 40 (109)
.|+..+.++.+++ |+ .++.+|..+......+.+.
T Consensus 91 ~~~~~~~l~~l~~-g~-~~~i~t~~~~~~~~~~~~~ 124 (211)
T 2i6x_A 91 SAEKFDYIDSLRP-DY-RLFLLSNTNPYVLDLAMSP 124 (211)
T ss_dssp CHHHHHHHHHHTT-TS-EEEEEECCCHHHHHHHTST
T ss_pred ChHHHHHHHHHHc-CC-eEEEEeCCCHHHHHHHHhh
Confidence 4777888888888 98 6999998888877777776
No 190
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=30.78 E-value=58 Score=20.31 Aligned_cols=39 Identities=10% Similarity=0.160 Sum_probs=28.3
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec----------CCHHHHHHHHHhc
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV----------NDAFVMEAWCRKN 41 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~----------dd~f~~~aW~~~~ 41 (109)
-.-|++.+-++++.+.|+++|+.+.- |-|-....|.+..
T Consensus 45 ~~~P~l~~~l~~l~~~G~~~vvvvPlfl~~G~H~~~Dip~~~~~~~~~~ 93 (126)
T 3lyh_A 45 LAEPSLDTIVNRAKGQGVEQFTVVPLFLAAGRHLRKDVPAMIERLEAEH 93 (126)
T ss_dssp SSSSBHHHHHHHHHHTTCCEEEEEECCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEecccCCCchhhhHHHHHHHHHHHHh
Confidence 35588888999999999988888853 3344456676655
No 191
>3pnx_A Putative sulfurtransferase DSRE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE GOL; 1.92A {Syntrophomonas wolfei}
Probab=29.99 E-value=22 Score=24.24 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=21.0
Q ss_pred CcchhHHHcHHHHHhCCCCEEEEEec
Q psy5401 3 THLPGYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 3 ~hlp~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
.++|++.+.+++.++.|| ++++.+.
T Consensus 99 ~~v~~l~eli~~a~~~Gv-k~~aC~~ 123 (160)
T 3pnx_A 99 EKAPKLSDLLSGARKKEV-KFYACQL 123 (160)
T ss_dssp HTCCCHHHHHHHHHHTTC-EEEEEHH
T ss_pred cCCCCHHHHHHHHHHCCC-EEEEehh
Confidence 467899999999999999 6887765
No 192
>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*
Probab=29.47 E-value=8.9 Score=25.47 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=28.1
Q ss_pred chhHHHcHHHHHhC-CCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAK-GIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~-Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++++++. |+ .+..+|..+......+.+..++
T Consensus 75 ~~g~~e~L~~L~~~~g~-~~~ivT~~~~~~~~~~l~~~gl 113 (193)
T 2i7d_A 75 IPGALDAVREMNDLPDT-QVFICTSPLLKYHHCVGEKYRW 113 (193)
T ss_dssp CTTHHHHHHHHHTSTTE-EEEEEECCCSSCTTTHHHHHHH
T ss_pred CcCHHHHHHHHHhCCCC-eEEEEeCCChhhHHHHHHHhCc
Confidence 57888899999998 99 6888887766555555554443
No 193
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A
Probab=29.23 E-value=69 Score=20.63 Aligned_cols=38 Identities=8% Similarity=0.074 Sum_probs=30.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEG 45 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~ 45 (109)
.|+..+ ++.+++. + .+..+|..+......+.+..++..
T Consensus 76 ~~~~~~-l~~l~~~-~-~~~i~t~~~~~~~~~~l~~~~l~~ 113 (201)
T 2w43_A 76 YEDTKY-LKEISEI-A-EVYALSNGSINEVKQHLERNGLLR 113 (201)
T ss_dssp CGGGGG-HHHHHHH-S-EEEEEESSCHHHHHHHHHHTTCGG
T ss_pred CCChHH-HHHHHhC-C-eEEEEeCcCHHHHHHHHHHCCcHH
Confidence 467777 8888888 8 688888888888888888887643
No 194
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=29.22 E-value=56 Score=23.86 Aligned_cols=43 Identities=9% Similarity=0.090 Sum_probs=29.9
Q ss_pred HcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchH
Q psy5401 10 AKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEF 57 (109)
Q Consensus 10 ~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~ 57 (109)
+..++++++|. .|++-.+|++..++... ..|.. -+++|.-..+
T Consensus 259 ~~v~~~~~~Gl-~V~~WTVn~~~~~~~l~-~~GVD---gIiTD~P~~~ 301 (313)
T 3l12_A 259 ELVAEAHDLGL-IVLTWTVNEPEDIRRMA-TTGVD---GIVTDYPGRT 301 (313)
T ss_dssp HHHHHHHHTTC-EEEEBCCCSHHHHHHHH-HHTCS---EEEESCHHHH
T ss_pred HHHHHHHHCCC-EEEEEcCCCHHHHHHHH-HcCCC---EEEeCCHHHH
Confidence 34566678899 79999999998888766 45654 3556744333
No 195
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=28.76 E-value=39 Score=23.83 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=30.5
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHhH
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 59 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~k 59 (109)
..++++++|. .|++-.+|++..++.+. ..|.. -+++|.-..+.+
T Consensus 203 ~v~~~~~~G~-~v~~wTvn~~~~~~~l~-~~Gvd---gIiTD~P~~~~~ 246 (252)
T 2pz0_A 203 LVEGCKKNGV-KLFPWTVDRKEDMERMI-KAGVD---GIITDDPETLIN 246 (252)
T ss_dssp HHHHHHHTTC-EECCBCCCSHHHHHHHH-HHTCS---EEEESCHHHHHH
T ss_pred HHHHHHHCCC-EEEEECCCCHHHHHHHH-HcCCC---EEEcCCHHHHHH
Confidence 4556678899 79999999998887665 45664 356775444433
No 196
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=28.75 E-value=37 Score=23.37 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=25.7
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNN 42 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~ 42 (109)
|.+.+....+.+.|+| .++++-|+.....+-++..+
T Consensus 62 ~~l~~~~~~l~~~g~d-~iviaCnta~~~~~l~~~~~ 97 (228)
T 2eq5_A 62 PKIIRLAKEFEREGVD-AIIISCAADPAVEKVRKLLS 97 (228)
T ss_dssp HHHHHHHHHHHHTTCS-EEEECSTTCTTHHHHHHHCS
T ss_pred HHHHHHHHHHHHCCCC-EEEEeCCchHHHHHHHHhCC
Confidence 4566667788889997 78888888765666555554
No 197
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6
Probab=28.40 E-value=51 Score=21.32 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=31.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
.|+..+.++.+++. + .+..+|..+......+.+.+++...|
T Consensus 85 ~~~~~~~l~~l~~~-~-~~~i~s~~~~~~~~~~l~~~~l~~~f 125 (209)
T 2hdo_A 85 YPGITSLFEQLPSE-L-RLGIVTSQRRNELESGMRSYPFMMRM 125 (209)
T ss_dssp CTTHHHHHHHSCTT-S-EEEEECSSCHHHHHHHHTTSGGGGGE
T ss_pred CCCHHHHHHHHHhc-C-cEEEEeCCCHHHHHHHHHHcChHhhc
Confidence 36677777888877 7 68889998888888888888764333
No 198
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=28.14 E-value=49 Score=23.36 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=28.7
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCc
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNL 55 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~ 55 (109)
..+++++.|. .|++-.+|++..++.+. ..|.. -+++|.-.
T Consensus 196 ~v~~~~~~G~-~V~~WTvn~~~~~~~l~-~~GVD---gIiTD~P~ 235 (250)
T 3ks6_A 196 LMAQVQAAGL-DFGCWAAHTPSQITKAL-DLGVK---VFTTDRPT 235 (250)
T ss_dssp HHHHHHHTTC-EEEEECCCSHHHHHHHH-HHTCS---EEEESCHH
T ss_pred HHHHHHHCCC-EEEEEeCCCHHHHHHHH-HcCCC---EEEcCCHH
Confidence 4556678899 79999999998887765 45664 35566433
No 199
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}
Probab=28.07 E-value=57 Score=21.46 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|..+........+. ++.
T Consensus 110 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~-~l~ 147 (247)
T 3dv9_A 110 MPGALEVLTKIKSEGL-TPMVVTGSGQTSLLDRLNH-NFP 147 (247)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSCC---CHHHHHH-HST
T ss_pred CCCHHHHHHHHHHcCC-cEEEEcCCchHHHHHHHHh-hHH
Confidence 4778888999999999 6888888876666666555 654
No 200
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=28.00 E-value=36 Score=21.18 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.9
Q ss_pred EEEEEe-CCeEEEEEE
Q psy5401 78 YSMVVD-DGKITQLNI 92 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v 92 (109)
.++++| +|+|.+++-
T Consensus 19 ~i~~~D~~g~I~~~N~ 34 (129)
T 3mfx_A 19 AMILVNANGFIRSCNQ 34 (129)
T ss_dssp EEEEEETTSBEEEECH
T ss_pred eEEEECCCCEEEeEhH
Confidence 467889 999998753
No 201
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=27.75 E-value=93 Score=17.99 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=19.4
Q ss_pred CCchHhHhhCCccccccCCceeEeEEEEEEe-CCeEEEEEE
Q psy5401 53 PNLEFTKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNI 92 (109)
Q Consensus 53 ~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVd-dG~V~~~~v 92 (109)
.+.++++.||+.. . + +|++. +|++.....
T Consensus 66 ~~~~~~~~~~v~~----~-P------t~~~~~~G~~~~~~~ 95 (111)
T 2pu9_C 66 ENKTLAKELGIRV----V-P------TFKILKENSVVGEVT 95 (111)
T ss_dssp TTHHHHHHHCCSB----S-S------EEEEESSSSEEEEEE
T ss_pred chHHHHHHcCCCe----e-e------EEEEEeCCcEEEEEc
Confidence 6789999998742 1 1 24555 999876544
No 202
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=27.74 E-value=1.3e+02 Score=21.92 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=33.0
Q ss_pred cchhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce
Q psy5401 4 HLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI 47 (109)
Q Consensus 4 hlp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i 47 (109)
.++.|.+.+..++..|. +++.|+-=-|++. ++.+.+++..++
T Consensus 51 ~~~~l~~dIa~L~~~G~-~vVlVhgGg~~i~-~~l~~lg~~~~~ 92 (279)
T 3l86_A 51 LSGDFLSQIKNWQDAGK-QLVIVHGGGFAIN-KLMEENQVPVKK 92 (279)
T ss_dssp CCHHHHHHHHHHHHTTC-EEEEEECCHHHHH-HHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHhCCC-cEEEEECCHHHHH-HHHHHcCCCCcc
Confidence 46789999999999999 6888887777775 788888876434
No 203
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=27.67 E-value=37 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=11.3
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
.++++| +|+|.+++
T Consensus 19 ~i~~~D~~g~I~~~N 33 (115)
T 3b33_A 19 ATLILDDGLAIRYAN 33 (115)
T ss_dssp EEEEECTTCBEEEEC
T ss_pred eEEEECCCCcEEEEC
Confidence 557889 99999875
No 204
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A
Probab=27.43 E-value=1.1e+02 Score=21.21 Aligned_cols=36 Identities=3% Similarity=0.168 Sum_probs=28.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKN 41 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~ 41 (109)
.|+..+.+..++++|+ .+..+|..+....+...+..
T Consensus 132 ~~g~~~~L~~L~~~g~-~~~i~Tn~~~~~~~~~l~~~ 167 (261)
T 1yns_A 132 FADVVPAVRKWREAGM-KVYIYSSGSVEAQKLLFGHS 167 (261)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHTB
T ss_pred CcCHHHHHHHHHhCCC-eEEEEeCCCHHHHHHHHHhh
Confidence 4777888999999999 68888888887777776643
No 205
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}
Probab=27.39 E-value=49 Score=22.14 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNA 43 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~ 43 (109)
.|+..+.++.++++| . +..+|..+......+.+.+++
T Consensus 98 ~~g~~~~l~~l~~~g-~-~~i~Tn~~~~~~~~~l~~~gl 134 (231)
T 2p11_A 98 YPGALNALRHLGARG-P-TVILSDGDVVFQPRKIARSGL 134 (231)
T ss_dssp CTTHHHHHHHHHTTS-C-EEEEEECCSSHHHHHHHHTTH
T ss_pred CccHHHHHHHHHhCC-C-EEEEeCCCHHHHHHHHHHcCc
Confidence 477888899999998 5 778888777777888877765
No 206
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=27.37 E-value=66 Score=19.72 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.7
Q ss_pred EEEeCCeEEEEEEecCCCc
Q psy5401 80 MVVDDGKITQLNIEPDGTG 98 (109)
Q Consensus 80 fiVddG~V~~~~v~~~~~~ 98 (109)
|-|+||+|+.+++.-+|..
T Consensus 92 ~~v~dGrI~~i~~~~dp~~ 110 (114)
T 3f40_A 92 YHLEKGEITSLHVYFDPRP 110 (114)
T ss_dssp EEEETTEEEEEEEECCCGG
T ss_pred EEEcCCeEEEEEEEECChh
Confidence 4457999999998877743
No 207
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Probab=27.07 E-value=93 Score=21.31 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=43.0
Q ss_pred chhHHHcHHHHHhCCC-CEEEEEecCCHHHHHHHHHhcCCCCce--EEeecCC--------------chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGI-HEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLADPN--------------LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gv-d~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD~~--------------~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ +.+..+|..+........+.+++..-| .+.+|.. ..+.+.+|+..
T Consensus 144 ~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~ 221 (282)
T 3nuq_A 144 DIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLAR 221 (282)
T ss_dssp CHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTSHHHHHHHHHHHTCCC
T ss_pred ChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcccccceEEEeccCCCcccCCCcCHHHHHHHHHHcCCCC
Confidence 6788888999999997 238888888888888888888875433 4444422 14567778764
No 208
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}
Probab=26.97 E-value=78 Score=20.67 Aligned_cols=58 Identities=19% Similarity=0.070 Sum_probs=36.5
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeecCC----------chHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLADPN----------LEFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD~~----------~~~~k~~G~~~ 65 (109)
.|+..+.++.+++.|+ .+..+|..+. .....+..++..-| .+.+|.. ..+.+.+|+..
T Consensus 94 ~~~~~~~l~~l~~~g~-~~~i~t~~~~--~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~ 163 (233)
T 3nas_A 94 LPGIGRLLCQLKNENI-KIGLASSSRN--APKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSP 163 (233)
T ss_dssp CTTHHHHHHHHHHTTC-EEEECCSCTT--HHHHHHHTTCTTTCSEECCC---------CCHHHHHHHHHTSCG
T ss_pred CcCHHHHHHHHHHCCC-cEEEEcCchh--HHHHHHHcCcHhhcCEEeeHhhCCCCCCChHHHHHHHHHcCCCH
Confidence 6788888999999999 5777766544 66667777765423 2333321 24567777753
No 209
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=26.68 E-value=70 Score=22.47 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=33.1
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHh
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFT 58 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~ 58 (109)
..++++++|. .|++-.+|++..++.|....|.. -+++|.-..+.
T Consensus 186 ~v~~~~~~G~-~v~~wTvn~~~~~~~~l~~~Gvd---gIiTD~p~~~~ 229 (248)
T 1zcc_A 186 IIEASRKAGL-EIMVYYGGDDMAVHREIATSDVD---YINLDRPDLFA 229 (248)
T ss_dssp HHHHHHHHTC-EEEEECCCCCHHHHHHHHHSSCS---EEEESCHHHHH
T ss_pred HHHHHHHCCC-EEEEECCCCHHHHHHHHHHcCCC---EEEECCHHHHH
Confidence 4456677899 79999999999999988888875 36677544443
No 210
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=26.39 E-value=1.2e+02 Score=23.51 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=28.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHh
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRK 40 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~ 40 (109)
.|++.+.++.++++|+ .+..+|.++.-..++..+.
T Consensus 258 ypgv~e~L~~Lk~~Gi-~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 258 FTEFQEWVKKLKNRGI-IIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHhh
Confidence 4678888999999999 6888888887776776665
No 211
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10
Probab=26.00 E-value=1.1e+02 Score=20.64 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=31.2
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|...+.+.+++++|+ .|+.+|-.++.....+.+..++.
T Consensus 23 ~~~~~al~~l~~~G~-~v~i~TGR~~~~~~~~~~~l~~~ 60 (231)
T 1wr8_A 23 EKALEAIRRAESLGI-PIMLVTGNTVQFAEAASILIGTS 60 (231)
T ss_dssp HHHHHHHHHHHHTTC-CEEEECSSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHcCCC
Confidence 667888999999999 48888888888888888877764
No 212
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=25.91 E-value=1.1e+02 Score=18.39 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=38.3
Q ss_pred hHHHcHHHHHhCC-CCEEEEEecCCHHHHHH------HHHhcCCCCceE---EeecCCchHhHhhCCccccccCCceeEe
Q psy5401 7 GYLAKEKDLKAKG-IHEIFCIAVNDAFVMEA------WCRKNNAEGKIR---FLADPNLEFTKKLGVEHEIPVLGGWRSK 76 (109)
Q Consensus 7 ~f~~~~~~f~~~G-vd~V~~iS~dd~f~~~a------W~~~~~~~~~i~---~lsD~~~~~~k~~G~~~~~~~~Gg~r~~ 76 (109)
.|.+.+.+.+..| .--|.--+..-+.+.+. +++..+ .+. +=.|.+.++++.||+.. . +
T Consensus 26 ~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~---~v~~~~vd~d~~~~l~~~~~v~~----~-P---- 93 (124)
T 1xfl_A 26 TWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP---NVLFLKVDTDELKSVASDWAIQA----M-P---- 93 (124)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS---SEEEEEEETTTSHHHHHHTTCCS----S-S----
T ss_pred HHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC---CcEEEEEECccCHHHHHHcCCCc----c-C----
Confidence 4444444433233 21344455556666543 233332 233 33467889999998752 1 1
Q ss_pred EEEEEEeCCeEEEEEE
Q psy5401 77 RYSMVVDDGKITQLNI 92 (109)
Q Consensus 77 R~~fiVddG~V~~~~v 92 (109)
..+++.+|++.+...
T Consensus 94 -t~~~~~~G~~~~~~~ 108 (124)
T 1xfl_A 94 -TFMFLKEGKILDKVV 108 (124)
T ss_dssp -EEEEEETTEEEEEEE
T ss_pred -EEEEEECCEEEEEEe
Confidence 223336999877654
No 213
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6
Probab=25.70 E-value=73 Score=20.87 Aligned_cols=59 Identities=5% Similarity=0.069 Sum_probs=38.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc--eEEeec----CCc----hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLAD----PNL----EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~--i~~lsD----~~~----~~~k~~G~~~ 65 (109)
.|+..+.++.+++ |+ .+..+|..+........+..++..- ..+.+| |+. ...+.+|+..
T Consensus 86 ~~g~~~~l~~L~~-~~-~l~i~T~~~~~~~~~~l~~~gl~~~f~~i~~~~~~~Kp~p~~~~~~~~~lg~~p 154 (210)
T 2ah5_A 86 FPQIIDLLEELSS-SY-PLYITTTKDTSTAQDMAKNLEIHHFFDGIYGSSPEAPHKADVIHQALQTHQLAP 154 (210)
T ss_dssp CTTHHHHHHHHHT-TS-CEEEEEEEEHHHHHHHHHHTTCGGGCSEEEEECSSCCSHHHHHHHHHHHTTCCG
T ss_pred CCCHHHHHHHHHc-CC-eEEEEeCCCHHHHHHHHHhcCchhheeeeecCCCCCCCChHHHHHHHHHcCCCc
Confidence 4778888899998 99 4777777666666667777777532 345566 222 2456677653
No 214
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A
Probab=25.68 E-value=1.2e+02 Score=20.24 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=29.6
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.++ |+ .++.+|..+......+.+..++.
T Consensus 95 ~~~~~~~l~~l~--g~-~~~i~t~~~~~~~~~~l~~~gl~ 131 (253)
T 1qq5_A 95 YPDAAQCLAELA--PL-KRAILSNGAPDMLQALVANAGLT 131 (253)
T ss_dssp CTTHHHHHHHHT--TS-EEEEEESSCHHHHHHHHHHTTCG
T ss_pred CccHHHHHHHHc--CC-CEEEEeCcCHHHHHHHHHHCCch
Confidence 467777788887 88 68888888888888888888764
No 215
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=25.46 E-value=1.7e+02 Score=21.23 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=31.4
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
+..+.+.+.++++.|. +++.|+-.-|++. ++.+.++..
T Consensus 44 ~~~~~~~i~~l~~~G~-~vVlVhGgG~~i~-~~~~~~g~~ 81 (300)
T 2buf_A 44 KAGFARDVVLMKAVGI-NPVVVHGGGPQIG-DLLKRLSIE 81 (300)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEECCCHHHH-HHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCC-eEEEEECCcHHHH-HHHHHcCCC
Confidence 5678888889999999 6888888999997 777777765
No 216
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=25.30 E-value=47 Score=18.97 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=11.2
Q ss_pred EEEEEe-C-CeEEEEE
Q psy5401 78 YSMVVD-D-GKITQLN 91 (109)
Q Consensus 78 ~~fiVd-d-G~V~~~~ 91 (109)
.++++| + |+|.+++
T Consensus 10 ~i~~~d~~~g~I~~~N 25 (114)
T 1ll8_A 10 AIFTVDAKTTEILVAN 25 (114)
T ss_dssp EEEEEETTTCBEEEEC
T ss_pred eEEEEECCCCeEEEeh
Confidence 467888 8 9999874
No 217
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=25.26 E-value=1e+02 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=32.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+-.++++++|+ +++.+|-|.....++-++..|+.
T Consensus 460 ~~~~~~i~~L~~~Gi-~v~~~TGd~~~~a~~ia~~lgi~ 497 (645)
T 3j08_A 460 ESAKPAVQELKRMGI-KVGMITGDNWRSAEAISRELNLD 497 (645)
T ss_dssp TTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCC
Confidence 455677888999999 69999999999999999998874
No 218
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}
Probab=25.23 E-value=1e+02 Score=21.04 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|..+.. ...+.+..++.
T Consensus 108 ~~~~~~~l~~l~~~g~-~~~i~tn~~~~-~~~~l~~~gl~ 145 (263)
T 3k1z_A 108 LDGAEDTLRECRTRGL-RLAVISNFDRR-LEGILGGLGLR 145 (263)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEEESCCTT-HHHHHHHTTCG
T ss_pred CcCHHHHHHHHHhCCC-cEEEEeCCcHH-HHHHHHhCCcH
Confidence 4677888899999999 68888865554 56777777764
No 219
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=24.84 E-value=78 Score=21.71 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=25.5
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.+++++++|+ .+..+|.+.........+.+++.
T Consensus 84 ~L~~L~~~G~-~l~I~T~~~~~~~~~~l~~lgi~ 116 (211)
T 3ij5_A 84 GIRCLITSDI-DVAIITGRRAKLLEDRANTLGIT 116 (211)
T ss_dssp HHHHHHHTTC-EEEEECSSCCHHHHHHHHHHTCC
T ss_pred HHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCc
Confidence 3577888899 68888888777777777777774
No 220
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.69 E-value=1.2e+02 Score=18.26 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=9.8
Q ss_pred cCCchHhHhhCCc
Q psy5401 52 DPNLEFTKKLGVE 64 (109)
Q Consensus 52 D~~~~~~k~~G~~ 64 (109)
|.+.++++.||+.
T Consensus 78 ~~~~~~~~~~~v~ 90 (140)
T 2dj1_A 78 TSASMLASKFDVS 90 (140)
T ss_dssp TTCHHHHHHTTCC
T ss_pred cccHHHHHHCCCC
Confidence 4567888888874
No 221
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis}
Probab=24.26 E-value=90 Score=22.77 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=13.7
Q ss_pred HHcHHHHHhCCCCEEEEEecCCH
Q psy5401 9 LAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 9 ~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
.+..++++++|. .|++-.+|++
T Consensus 218 ~~~V~~ah~~G~-~V~vWTv~t~ 239 (292)
T 3mz2_A 218 REVIDMLHERGV-MCMISTAPSD 239 (292)
T ss_dssp HHHHHHHHHTTB-CEEEECTTTG
T ss_pred HHHHHHHHHCCC-EEEEEeCCCc
Confidence 345566667777 4776666654
No 222
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=24.23 E-value=19 Score=26.35 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=27.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHH-HHHHHHHhcCCCCceEEee
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAF-VMEAWCRKNNAEGKIRFLA 51 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f-~~~aW~~~~~~~~~i~~ls 51 (109)
|.+.+..+.|.+.|+| .+.|+.|+.. +..+-++..+ +|++.
T Consensus 86 ~~l~~~~~~L~~~Gad-~IVIaCNTah~~l~~lr~~~~----iPvig 127 (268)
T 3s81_A 86 RYLERYLHMLEDAGAE-CIVIPCNTAHYWFDDLQNVAK----ARMIS 127 (268)
T ss_dssp HHHHHHHHHHHHTTCS-EEECSCSGGGGGHHHHHHHCS----SEEEC
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCCCHHHHHHHHHHHCC----CCEEc
Confidence 4556778888999997 9999999863 3444444432 55553
No 223
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=23.91 E-value=47 Score=21.49 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=12.9
Q ss_pred EEEEEe-CCeEEEEEEe
Q psy5401 78 YSMVVD-DGKITQLNIE 93 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~v~ 93 (109)
.++++| +|+|+|.+-.
T Consensus 31 gI~~vD~~g~I~~~N~a 47 (151)
T 2qkp_A 31 EITFVNKDDIFQYYNDS 47 (151)
T ss_dssp EEEEEETTSBEEEECCC
T ss_pred ceEEEcCCCeEEEEeCC
Confidence 457888 9999999655
No 224
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=23.74 E-value=1.3e+02 Score=19.98 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=39.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCc---eEEeecCCc----hHhHhhCCcc
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK---IRFLADPNL----EFTKKLGVEH 65 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~---i~~lsD~~~----~~~k~~G~~~ 65 (109)
.|+..+.++.++ .|+ .+..+|..+......+.+..++..- +..-+.|++ .+.+.+|+..
T Consensus 114 ~~~~~~~l~~l~-~~~-~~~i~t~~~~~~~~~~l~~~~l~~~f~~i~~~~kp~~~~~~~~~~~l~~~~ 179 (251)
T 2pke_A 114 IAGVREAVAAIA-ADY-AVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKDPQTYARVLSEFDLPA 179 (251)
T ss_dssp CTTHHHHHHHHH-TTS-EEEEEEESCHHHHHHHHHHHSGGGTCCCEEEESCCSHHHHHHHHHHHTCCG
T ss_pred CccHHHHHHHHH-CCC-EEEEEeCCCHHHHHHHHHHcCcHHhCceeeeeCCCCHHHHHHHHHHhCcCc
Confidence 467777888888 888 6888888888777777777665421 222233444 3456778753
No 225
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=23.60 E-value=52 Score=18.62 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=11.0
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
..+++| +|+|.+++
T Consensus 31 ~i~~~d~~g~i~~~N 45 (125)
T 3fc7_A 31 GIVHLTTNGTILSVN 45 (125)
T ss_dssp EEEEEETTSBEEEEC
T ss_pred eEEEEcCCCeEEEEC
Confidence 457788 99998874
No 226
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=22.99 E-value=50 Score=19.13 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=11.0
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
..+++| +|+|.|++
T Consensus 17 ~i~~~d~~g~i~~~N 31 (120)
T 2gj3_A 17 AISITDLKANILYAN 31 (120)
T ss_dssp EEEEECTTCBEEEEC
T ss_pred eEEEECCCCCEEeeh
Confidence 457788 99999874
No 227
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=22.95 E-value=75 Score=22.24 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=29.5
Q ss_pred cHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCceEEeecCCch
Q psy5401 11 KEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLE 56 (109)
Q Consensus 11 ~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~ 56 (109)
..++++++|. .|++-.+|++..++.+.+ .|.. -+++|.-..
T Consensus 188 ~v~~~~~~G~-~v~~WTVn~~~~~~~l~~-~GVd---gIiTD~P~~ 228 (238)
T 3no3_A 188 WVKDCKVLGM-TSNVWTVDDPKLMEEMID-MGVD---FITTDLPEE 228 (238)
T ss_dssp HHHHHHHTTC-EEEEECCCSHHHHHHHHH-HTCS---EEEESCHHH
T ss_pred HHHHHHHCCC-EEEEECCCCHHHHHHHHH-cCCC---EEECCCHHH
Confidence 4566788999 799999999998887764 5664 355664333
No 228
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.65 E-value=1.1e+02 Score=19.89 Aligned_cols=24 Identities=8% Similarity=0.068 Sum_probs=17.0
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVN 29 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~d 29 (109)
-+...+.++..+++|+ .|++|+.+
T Consensus 92 t~~~~~~~~~ak~~g~-~vi~IT~~ 115 (186)
T 1m3s_A 92 TKSLIHTAAKAKSLHG-IVAALTIN 115 (186)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred cHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3556667777778888 57787765
No 229
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A*
Probab=22.44 E-value=53 Score=24.86 Aligned_cols=33 Identities=6% Similarity=0.077 Sum_probs=17.3
Q ss_pred EEEEEecCCHHHHHHHHHhcCCCCceEEeecCCchHh
Q psy5401 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFT 58 (109)
Q Consensus 22 ~V~~iS~dd~f~~~aW~~~~~~~~~i~~lsD~~~~~~ 58 (109)
+|++-.+|++..++... ..|.. -+++|.-..+.
T Consensus 243 ~V~vWTVNd~~~m~~l~-~~GVD---GIITD~Pd~l~ 275 (302)
T 3rlg_A 243 KVYYWTVDKRSTTRDAL-DAGVD---GIMTNYPDVIT 275 (302)
T ss_dssp EEEEECCCSHHHHHHHH-HTTCS---EEEESCHHHHH
T ss_pred EEEEEeCCCHHHHHHHH-HcCCC---EEECCCHHHHH
Confidence 56666666666665554 34443 24455433333
No 230
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=22.34 E-value=1.5e+02 Score=18.60 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHH----HHHHHHhcCCCCceEEeecCCchHhHhhCCc
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFV----MEAWCRKNNAEGKIRFLADPNLEFTKKLGVE 64 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~----~~aW~~~~~~~~~i~~lsD~~~~~~k~~G~~ 64 (109)
.++.+-.+.++.--+ ..+.++.|-+.- ...+|+..+.+ +...++.+-++.++.|..
T Consensus 29 ~G~~~t~kai~~gka-kLVilA~D~~~~~~~~i~~~c~~~~ip--v~~~~~s~~eLG~A~Gk~ 88 (112)
T 3iz5_f 29 LGYKTVLKTLRSSLG-KLIILANNCPPLRKSEIETYAMLAKIS--VHHFHGNNVDLGTACGKY 88 (112)
T ss_dssp ESHHHHHHHHHTTCC-SEEEECSCCCHHHHHHHHHHHHHTTCC--EECCCCTTCTHHHHHCTT
T ss_pred ECHHHHHHHHHcCCc-eEEEEeCCCCHHHHHHHHHHHHHcCCc--EEEeCCCHHHHHHHhCCc
Confidence 456666777776556 588899887652 24456777765 777778899999999875
No 231
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=22.32 E-value=1.2e+02 Score=24.98 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=32.0
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|+-.+-.+++++.|+ .++.+|-|.....++.++..|+.
T Consensus 538 ~~~~~~i~~l~~~Gi-~v~~~TGd~~~~a~~ia~~lgi~ 575 (723)
T 3j09_A 538 ESAKPAVQELKRMGI-KVGMITGDNWRSAEAISRELNLD 575 (723)
T ss_dssp TTHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHCCC-EEEEECCCCHHHHHHHHHHcCCc
Confidence 445567788899999 69999999999999999988874
No 232
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=22.24 E-value=52 Score=19.20 Aligned_cols=14 Identities=36% Similarity=0.344 Sum_probs=11.1
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
..+++| +|+|.+++
T Consensus 24 ~i~~~D~~g~i~~~N 38 (118)
T 3fg8_A 24 GFMALDEDLRIIYVN 38 (118)
T ss_dssp EEEEECTTCBEEEEC
T ss_pred eEEEECCCCeEEEEC
Confidence 457888 99999874
No 233
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A
Probab=22.10 E-value=69 Score=21.29 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=27.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++.|+ .+..+|..+........+. ++.
T Consensus 111 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~l~~-~l~ 148 (243)
T 3qxg_A 111 MPGAWELLQKVKSEGL-TPMVVTGSGQLSLLERLEH-NFP 148 (243)
T ss_dssp CTTHHHHHHHHHHTTC-EEEEECCCCCHHHHTTHHH-HST
T ss_pred CCCHHHHHHHHHHcCC-cEEEEeCCcHHHHHHHHHH-hHH
Confidence 5777888899999999 6888887775555555544 554
No 234
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=21.84 E-value=52 Score=19.93 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.2
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
+.+++| +|+|.|++
T Consensus 11 ~i~v~d~~G~i~yvn 25 (111)
T 2vlg_A 11 IHAVLASNGRIIYIS 25 (111)
T ss_dssp EEEEECTTSBEEEEC
T ss_pred EEEEEcCCCeEEEEC
Confidence 567888 99998874
No 235
>3lup_A DEGV family protein; PSI-2, MCSG, structural genomics, fatty acid binding, protei structure initiative; HET: ELA; 2.65A {Streptococcus agalactiae} SCOP: c.119.1.0
Probab=21.68 E-value=57 Score=23.86 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=20.5
Q ss_pred hHHHcHHHHHhCCCCEEEEEecCCH
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVNDA 31 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~dd~ 31 (109)
.|.+.++++.+.|.|+|++|+.-+.
T Consensus 71 ~~~~~f~~l~~~g~d~ii~i~iSs~ 95 (285)
T 3lup_A 71 ELDDLLCQLEKEGYTHVLGLFIAAG 95 (285)
T ss_dssp HHHHHHHHHHHTTCCEEEECCSCGG
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 5888999999889988999876543
No 236
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A
Probab=21.66 E-value=1.7e+02 Score=18.83 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=30.7
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.|+..+.++.+++. + .++.+|..+......+.+..++.
T Consensus 102 ~~~~~~~l~~l~~~-~-~~~i~t~~~~~~~~~~l~~~~~~ 139 (234)
T 3u26_A 102 YPEVVEVLKSLKGK-Y-HVGMITDSDTEQAMAFLDALGIK 139 (234)
T ss_dssp CTTHHHHHHHHTTT-S-EEEEEESSCHHHHHHHHHHTTCG
T ss_pred CcCHHHHHHHHHhC-C-cEEEEECCCHHHHHHHHHHcCcH
Confidence 46677788888887 7 68889988888888888888764
No 237
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10
Probab=21.57 E-value=2.1e+02 Score=19.84 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=29.3
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
|...+.+.+++++|+ .++..|--+........+.+++.
T Consensus 24 ~~~~~al~~l~~~G~-~~~iaTGR~~~~~~~~~~~l~~~ 61 (288)
T 1nrw_A 24 LENENALRQAQRDGI-EVVVSTGRAHFDVMSIFEPLGIK 61 (288)
T ss_dssp HHHHHHHHHHHHTTC-EEEEECSSCHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHcCCC
Confidence 556677888999999 57777777777777787777764
No 238
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=21.24 E-value=57 Score=18.16 Aligned_cols=14 Identities=14% Similarity=0.164 Sum_probs=10.6
Q ss_pred EEEEEe-CCeEEEEE
Q psy5401 78 YSMVVD-DGKITQLN 91 (109)
Q Consensus 78 ~~fiVd-dG~V~~~~ 91 (109)
..+++| +|+|.+++
T Consensus 25 ~i~~~d~~g~i~~~N 39 (118)
T 3olo_A 25 ASFCLGDNWQFLYVN 39 (118)
T ss_dssp EEEEECTTSBEEEEC
T ss_pred eEEEECCCCcEEEEH
Confidence 456778 99998864
No 239
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=21.17 E-value=81 Score=23.62 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=17.3
Q ss_pred hHHHcHHHHHhCCCCEEEEEecC
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAVN 29 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~d 29 (109)
.-.+..+++++.|+|-||++|=.
T Consensus 189 ~~~~~v~~lr~~g~D~II~l~H~ 211 (339)
T 3jyf_A 189 TARKYIPEMRAKGADVVVVVAHS 211 (339)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEEecc
Confidence 34456778888899988888753
No 240
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2
Probab=21.17 E-value=1.1e+02 Score=19.47 Aligned_cols=33 Identities=15% Similarity=0.343 Sum_probs=23.8
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHH
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWC 38 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~ 38 (109)
.|+..+.++++++.|+ .++.+|..+......+.
T Consensus 93 ~~~~~~~l~~l~~~g~-~~~i~t~~~~~~~~~~~ 125 (206)
T 2b0c_A 93 RPEVIAIMHKLREQGH-RVVVLSNTNRLHTTFWP 125 (206)
T ss_dssp CHHHHHHHHHHHHTTC-EEEEEECCCCCTTSCCG
T ss_pred CccHHHHHHHHHHCCC-eEEEEECCChHHHHHHH
Confidence 4778888899998999 68888876655433333
No 241
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=21.16 E-value=1.5e+02 Score=17.94 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=38.6
Q ss_pred hhHHHcHHHHHhCCCCEEEEEecCCHHHHHHH----HHhcCCCCceEEeecCCchHhHhhCCc
Q psy5401 6 PGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW----CRKNNAEGKIRFLADPNLEFTKKLGVE 64 (109)
Q Consensus 6 p~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW----~~~~~~~~~i~~lsD~~~~~~k~~G~~ 64 (109)
.++.+-.+.++..-+ ..+.++.|.|.-...+ |+..+.+ +..+.+...++.++.|..
T Consensus 19 ~G~~~v~kai~~gka-~lViiA~D~~~~~~~~l~~~c~~~~vp--~~~~~~s~~eLG~a~G~~ 78 (101)
T 1w41_A 19 MGARKSIQYAKMGGA-KLIIVARNARPDIKEDIEYYARLSGIP--VYEFEGTSVELGTLLGRP 78 (101)
T ss_dssp ESHHHHHHHHHHTCC-SEEEEETTSCHHHHHHHHHHHHHHTCC--EEEESSCHHHHHHHTTCS
T ss_pred ECHHHHHHHHHcCCC-cEEEEeCCCCHHHHHHHHHHHHhcCCC--EEEecCCHHHHHHHhCCC
Confidence 356666677776667 5999999988766654 4445553 444457788899988864
No 242
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=20.96 E-value=1.5e+02 Score=18.95 Aligned_cols=38 Identities=3% Similarity=-0.104 Sum_probs=29.0
Q ss_pred cchhHHHcHHHHHhCC-CCEEEEEecCCHHHHHHHHHhcCCC
Q psy5401 4 HLPGYLAKEKDLKAKG-IHEIFCIAVNDAFVMEAWCRKNNAE 44 (109)
Q Consensus 4 hlp~f~~~~~~f~~~G-vd~V~~iS~dd~f~~~aW~~~~~~~ 44 (109)
.+.++.+++.-+++.| +|.|+..|.++ |+. +.+.+++.
T Consensus 49 ~l~~~~eR~~~l~~~~~vd~v~~~~~~~-f~~--~~~~l~~~ 87 (143)
T 3glv_A 49 PIFDENSRLALISELKVVDRAILGHEGD-MMK--TVIEVKPD 87 (143)
T ss_dssp CSSCHHHHHHHHTTBTTCSEEEECCTTC-HHH--HHHHHCCS
T ss_pred CCCCHHHHHHHHHhcCCCCEEEEcCchh-HHH--HHHhcCCC
Confidence 3556778888888888 99999988888 663 56677764
No 243
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Probab=20.86 E-value=1.8e+02 Score=19.87 Aligned_cols=46 Identities=7% Similarity=0.051 Sum_probs=33.3
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecCCHHHHHHHHHhcCCCCce--EEeec
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKI--RFLAD 52 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~dd~f~~~aW~~~~~~~~~i--~~lsD 52 (109)
.|+..+.+.++++ ++ .+..+|..+......+.+.+++..-| .+.+|
T Consensus 123 ~~g~~~~L~~L~~-~~-~l~i~Tn~~~~~~~~~l~~~gl~~~f~~i~~~~ 170 (260)
T 2gfh_A 123 ADDVKAMLTELRK-EV-RLLLLTNGDRQTQREKIEACACQSYFDAIVIGG 170 (260)
T ss_dssp CHHHHHHHHHHHT-TS-EEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGG
T ss_pred CcCHHHHHHHHHc-CC-cEEEEECcChHHHHHHHHhcCHHhhhheEEecC
Confidence 4777888888887 57 68888888888788888888875322 34454
No 244
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=20.61 E-value=1.3e+02 Score=17.24 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=21.4
Q ss_pred EeecCCchHhHhhCCccccccCCceeEeEEEEEEeCCeEEEEEE
Q psy5401 49 FLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNI 92 (109)
Q Consensus 49 ~lsD~~~~~~k~~G~~~~~~~~Gg~r~~R~~fiVddG~V~~~~v 92 (109)
+=.|.+.++++.||+.. . + ..+++.+|++.....
T Consensus 60 vd~~~~~~~~~~~~v~~----~-P-----t~~~~~~G~~~~~~~ 93 (112)
T 3d6i_A 60 IDADENSEISELFEISA----V-P-----YFIIIHKGTILKELS 93 (112)
T ss_dssp EETTTCHHHHHHTTCCS----S-S-----EEEEEETTEEEEEEC
T ss_pred EecccCHHHHHHcCCCc----c-c-----EEEEEECCEEEEEec
Confidence 33467888999998742 1 1 223447998876543
No 245
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=20.50 E-value=80 Score=23.30 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred chhHHHcHHHHHhCCCCEEEEEecC
Q psy5401 5 LPGYLAKEKDLKAKGIHEIFCIAVN 29 (109)
Q Consensus 5 lp~f~~~~~~f~~~Gvd~V~~iS~d 29 (109)
=|...+.++++++.|+++|+++..=
T Consensus 90 ~P~i~~~l~~l~~~G~~~ivvlPl~ 114 (310)
T 2h1v_A 90 EPFIEDAVAEMHKDGITEAVSIVLA 114 (310)
T ss_dssp SSBHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCHHHHHHHHHhcCCCEEEEEECc
Confidence 3677888999999999999998764
No 246
>3mtw_A L-arginine carboxypeptidase CC2672; hydrolase; HET: KCX M3R; 1.70A {Caulobacter vibrioides}
Probab=20.45 E-value=82 Score=21.47 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=14.9
Q ss_pred EeEEEEEEeCCeEEEEEEe
Q psy5401 75 SKRYSMVVDDGKITQLNIE 93 (109)
Q Consensus 75 ~~R~~fiVddG~V~~~~v~ 93 (109)
..+.+++|+||+|..+.-.
T Consensus 20 i~~~~V~I~dG~I~~Ig~~ 38 (403)
T 3mtw_A 20 VDNPLVIVTDGRITSIGKK 38 (403)
T ss_dssp EESEEEEEETTEEEEEEET
T ss_pred ecCcEEEEECCEEEEEeCC
Confidence 4457789999999998643
No 247
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=20.35 E-value=1.2e+02 Score=18.25 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=15.4
Q ss_pred EEEEEEe-CCeEEEEEEec
Q psy5401 77 RYSMVVD-DGKITQLNIEP 94 (109)
Q Consensus 77 R~~fiVd-dG~V~~~~v~~ 94 (109)
+..|.|+ ||+|..+.+..
T Consensus 43 ~v~f~I~~~G~v~~~~v~~ 61 (106)
T 2k9k_A 43 TLSFTIDTTGKAVDINVVD 61 (106)
T ss_dssp EEEEEEETTTEEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEEEE
Confidence 6778999 99999998864
No 248
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.22 E-value=1.3e+02 Score=19.82 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=19.0
Q ss_pred EEEEEe--cCCHHHHHHH--HHhcCCCCceEEeec-CCchHhHh
Q psy5401 22 EIFCIA--VNDAFVMEAW--CRKNNAEGKIRFLAD-PNLEFTKK 60 (109)
Q Consensus 22 ~V~~iS--~dd~f~~~aW--~~~~~~~~~i~~lsD-~~~~~~k~ 60 (109)
-++++| -.++.+.++- ++..|.. +..+.+ ++..+++.
T Consensus 116 vvI~iS~SG~t~~~i~~~~~ak~~g~~--vI~IT~~~~s~La~~ 157 (199)
T 1x92_A 116 VLLAISTSGNSANVIQAIQAAHDREML--VVALTGRDGGGMASL 157 (199)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECTTCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCE--EEEEECCCCCcHHhc
Confidence 355554 3455555443 3444553 555555 55566665
No 249
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=20.20 E-value=87 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=16.8
Q ss_pred hHHHcHHHHHhCCCCEEEEEec
Q psy5401 7 GYLAKEKDLKAKGIHEIFCIAV 28 (109)
Q Consensus 7 ~f~~~~~~f~~~Gvd~V~~iS~ 28 (109)
...+..+++++.|+|.||++|=
T Consensus 195 ~~~~~v~~Lk~~g~D~II~l~H 216 (341)
T 3gve_A 195 SANETIPKMKAEGADVIIALAH 216 (341)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEEec
Confidence 3445677889899998888874
No 250
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.04 E-value=1.3e+02 Score=19.61 Aligned_cols=40 Identities=5% Similarity=0.041 Sum_probs=23.6
Q ss_pred EEEEEe--cCCHHHHHHH--HHhcCCCCceEEeec-CCchHhHhhCC
Q psy5401 22 EIFCIA--VNDAFVMEAW--CRKNNAEGKIRFLAD-PNLEFTKKLGV 63 (109)
Q Consensus 22 ~V~~iS--~dd~f~~~aW--~~~~~~~~~i~~lsD-~~~~~~k~~G~ 63 (109)
-++++| -+++.+.++- ++..|.. +..+.+ +++.+++.-..
T Consensus 119 ~vI~iS~SG~t~~~~~~~~~ak~~g~~--vI~IT~~~~s~L~~~ad~ 163 (198)
T 2xbl_A 119 VLIGYSTSGKSPNILAAFREAKAKGMT--CVGFTGNRGGEMRELCDL 163 (198)
T ss_dssp EEEEECSSSCCHHHHHHHHHHHHTTCE--EEEEECSCCCTHHHHCSE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCe--EEEEECCCCCcHHHhCCE
Confidence 577776 4556666554 4455553 666666 56677765443
Done!