RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5401
(109 letters)
>gnl|CDD|239311 cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like
subfamily; members are similar to the human protein,
PRX5, a homodimeric TRX peroxidase, widely expressed in
tissues and found cellularly in mitochondria,
peroxisomes and the cytosol. The cellular location of
PRX5 suggests that it may have an important antioxidant
role in organelles that are major sources of reactive
oxygen species (ROS), as well as a role in the control
of signal transduction. PRX5 has been shown to reduce
hydrogen peroxide, alkyl hydroperoxides and
peroxynitrite. As with all other PRXs, the N-terminal
peroxidatic cysteine of PRX5 is oxidized into a sulfenic
acid intermediate upon reaction with peroxides. Human
PRX5 is able to resolve this intermediate by forming an
intramolecular disulfide bond with its C-terminal
cysteine (the resolving cysteine), which can then be
reduced by TRX, just like an atypical 2-cys PRX. This
resolving cysteine, however, is not conserved in other
members of the subfamily. In such cases, it is assumed
that the oxidized cysteine is directly resolved by an
external small-molecule or protein reductant, typical of
a 1-cys PRX. In the case of the H. influenza PRX5
hybrid, the resolving glutaredoxin domain is on the same
protein chain as PRX. PRX5 homodimers show an A-type
interface, similar to atypical 2-cys PRXs.
Length = 155
Score = 153 bits (390), Expect = 2e-49
Identities = 51/107 (47%), Positives = 71/107 (66%), Gaps = 1/107 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
HLPGY+ +LKAKG+ E+ C++VND FVM+AW + A+ KIRFLAD N EFTK L
Sbjct: 47 AQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRFLADGNGEFTKAL 106
Query: 62 GVEHEI-PVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
G+ ++ GG RSKRY+++VDDGK+ L +E D + S + +
Sbjct: 107 GLTLDLSAAGGGIRSKRYALIVDDGKVKYLFVEEDPGDVEVSSAENV 153
>gnl|CDD|223750 COG0678, AHP1, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 165
Score = 137 bits (348), Expect = 4e-43
Identities = 53/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 62
+HLPGYL + KAKG+ EI+C++VNDAFVM AW + EG I+F+ D N EFTK +G
Sbjct: 56 SHLPGYLELADEFKAKGVDEIYCVSVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMG 115
Query: 63 VEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVD 105
+ + LG G RS RYSMVV++G + +L IEP G T S D
Sbjct: 116 MLVDKSDLGFGVRSWRYSMVVENGVVEKLFIEPPGDPFTVSSAD 159
>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the
different classes of PRXs including many proteins
originally known as bacterioferritin comigratory
proteins (BCP), based on their electrophoretic mobility
before their function was identified. PRXs are
thiol-specific antioxidant (TSA) proteins also known as
TRX peroxidases and alkyl hydroperoxide reductase C22
(AhpC) proteins. They confer a protective antioxidant
role in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either TRX, glutathione,
trypanothione and AhpF. They are distinct from other
peroxidases in that they have no cofactors such as
metals or prosthetic groups. The first step of
catalysis, common to all PRXs, is the nucleophilic
attack by the catalytic cysteine (also known as the
peroxidatic cysteine) on the peroxide leading to
cleavage of the oxygen-oxygen bond and the formation of
a cysteine sulfenic acid intermediate. The second step
of the reaction, the resolution of the intermediate,
distinguishes the different types of PRXs. The presence
or absence of a second cysteine (the resolving cysteine)
classifies PRXs as either belonging to the 2-cys or
1-cys type. The resolving cysteine of 2-cys PRXs is
either on the same chain (atypical) or on the second
chain (typical) of a functional homodimer. Structural
and motif analysis of this growing family supports the
need for a new classification system. The peroxidase
activity of PRXs is regulated in vivo by irreversible
cysteine over-oxidation into a sulfinic acid,
phosphorylation and limited proteolysis.
Length = 140
Score = 85.3 bits (212), Expect = 1e-22
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLG 62
T L + ++ G E+ ++V+ F +AW K L+DP+ EF K G
Sbjct: 40 TELCAFRDLAEEFAKGGA-EVLGVSVDSPFSHKAWAEKEG-GLNFPLLSDPDGEFAKAYG 97
Query: 63 VEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 98
V E GG + R + ++D DGKI + +EP TG
Sbjct: 98 VLIEKSAGGG-LAARATFIIDPDGKIRYVEVEPLPTG 133
>gnl|CDD|219888 pfam08534, Redoxin, Redoxin. This family of redoxins includes
peroxiredoxin, thioredoxin and glutaredoxin proteins.
Length = 142
Score = 77.4 bits (191), Expect = 1e-19
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 8 YLAK-EKDLKAKGIHEIFCIAVNDAF-VMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH 65
YL K K KAKG+ + A ND F VM W ++ K LAD + FTK G+
Sbjct: 49 YLEKLSKLYKAKGVDVVAVNASNDPFFVMNFWAKEGL---KYPVLADRDGAFTKAYGLT- 104
Query: 66 EIPVLGGWRSKRYSMVVDDGKITQLNIEPDGT 97
G R+ RY ++ +DGK+ L + PD
Sbjct: 105 ---EDAGLRTPRYFLIDEDGKVVYLEVGPDPG 133
>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family. This family contains
proteins related to alkyl hydroperoxide reductase (AhpC)
and thiol specific antioxidant (TSA).
Length = 124
Score = 41.0 bits (97), Expect = 8e-06
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
T LP ++ K G+ E+ ++V+ + + K L+DP+ E K
Sbjct: 42 TTELPALADLYEEFKKLGV-EVLGVSVDSPESHKKFAEKLGL--PFPLLSDPDGEVAKAY 98
Query: 62 GVEHEIPVLGGWRSKRYSMVVD-DGKI 87
GV +E + R + V+D DGKI
Sbjct: 99 GVLNE----EEGLALRTTFVIDPDGKI 121
>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 194
Score = 39.9 bits (94), Expect = 6e-05
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAW---CRKNNAEGKIRF--LADPNLEF 57
T + + + ++ + +G+ E+ ++ + F +AW R+ GKI+F +ADP E
Sbjct: 51 TEIIAFAKRYEEFQKRGV-EVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEI 109
Query: 58 TKKLGVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 98
+ GV H + R + ++D DG I + + P G
Sbjct: 110 ARAYGVLHP----EEGLALRGTFIIDPDGVIRHILVNPLTIG 147
>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC,
alkylhydroperoxide reductase subunit C) is one subunit
of a two-subunit complex with subunit F(TIGR03140).
Usually these are found as an apparent operon. The gene
has been characterized in Bacteroides fragilis where it
is important in oxidative stress defense. This gene
contains two invariant cysteine residues, one near the
N-terminus and one near the C-terminus, each followed
immediately by a proline residue [Cellular processes,
Detoxification, Cellular processes, Adaptations to
atypical conditions].
Length = 187
Score = 36.6 bits (85), Expect = 8e-04
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 15 LKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGG 72
LK G+ E++ ++ + FV +AW + A GKI + L DP T+ GV E
Sbjct: 61 LKKLGV-EVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIE----EA 115
Query: 73 WRSKRYSMVVD-DGKITQLNIEPDGTGLTCS-LVDELK 108
+ R + V+D +G I + I +G G S L+ ++K
Sbjct: 116 GLADRGTFVIDPEGVIQAVEIHDNGIGRDASELLRKIK 153
>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX
subfamily; PRXs are thiol-specific antioxidant (TSA)
proteins, which confer a protective role in cells
through its peroxidase activity by reducing hydrogen
peroxide, peroxynitrite, and organic hydroperoxides. The
functional unit of typical 2-cys PRX is a homodimer. A
unique intermolecular redox-active disulfide center is
utilized for its activity. Upon reaction with peroxides,
its peroxidatic cysteine is oxidized into a sulfenic
acid intermediate which is resolved by bonding with the
resolving cysteine from the other subunit of the
homodimer. This intermolecular disulfide bond is then
reduced by thioredoxin, tryparedoxin or AhpF. Typical
2-cys PRXs, like 1-cys PRXs, form decamers which are
stabilized by reduction of the active site cysteine.
Typical 2-cys PRX interacts through beta strands at one
edge of the monomer (B-type interface) to form the
functional homodimer, and uses an A-type interface
(similar to the dimeric interface in atypical 2-cys PRX
and PRX5) at the opposite end of the monomer to form the
stable decameric (pentamer of dimers) structure.
Length = 173
Score = 34.8 bits (81), Expect = 0.003
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
++ K E+ ++ + F AW RK GKI F LADP + ++ GV E
Sbjct: 57 EEFKKLNA-EVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDE 114
>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C;
Provisional.
Length = 187
Score = 30.3 bits (68), Expect = 0.14
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79
+++ ++ + F +AW + KI++ + DP T+ E L + R +
Sbjct: 67 DVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGL----ADRAT 122
Query: 80 MVVD-DGKITQLNIEPDGTG 98
VVD G I + + +G G
Sbjct: 123 FVVDPQGIIQAIEVTAEGIG 142
>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification,
protein turnover, chaperones].
Length = 157
Score = 28.8 bits (65), Expect = 0.41
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 14 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGW 73
+ + G + I+ + + + K+ L+D + E + GV E + G
Sbjct: 59 EFEKLGA-VVLGISPDSPKSHKKFAEKHGL--TFPLLSDEDGEVAEAYGVWGEKKMYGKE 115
Query: 74 --RSKRYSMVVD-DGKI 87
+R + V+D DGKI
Sbjct: 116 YMGIERSTFVIDPDGKI 132
>gnl|CDD|239268 cd02970, PRX_like2, Peroxiredoxin (PRX)-like 2 family; hypothetical
proteins that show sequence similarity to PRXs. Members
of this group contain a CXXC motif, similar to TRX. The
second cysteine in the motif corresponds to the
peroxidatic cysteine of PRX, however, these proteins do
not contain the other two residues of the catalytic
triad of PRX. PRXs confer a protective antioxidant role
in cells through their peroxidase activity in which
hydrogen peroxide, peroxynitrate, and organic
hydroperoxides are reduced and detoxified using reducing
equivalents derived from either thioredoxin,
glutathione, trypanothione and AhpF. TRXs alter the
redox state of target proteins by catalyzing the
reduction of their disulfide bonds via the CXXC motif
using reducing equivalents derived from either NADPH or
ferredoxins.
Length = 149
Score = 28.1 bits (63), Expect = 0.64
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
+ +L +L A G+ + + +EA+ + + ADP+ + + L
Sbjct: 40 REYLRALSKLLPELDALGVELV-AVGPESPEKLEAFDKGKFLPFPV--YADPDRKLYRAL 96
Query: 62 GVEHE--IPVLGGWRSKRYSMVV---DDGKITQLN----IEPDGT 97
G+ K ++ D+G QL I PDGT
Sbjct: 97 GLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGT 141
>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin
comigratory protein (BCP) subfamily; composed of
thioredoxin-dependent thiol peroxidases, widely
expressed in pathogenic bacteria, that protect cells
against toxicity from reactive oxygen species by
reducing and detoxifying hydroperoxides. The protein was
named BCP based on its electrophoretic mobility before
its function was known. BCP shows substrate selectivity
toward fatty acid hydroperoxides rather than hydrogen
peroxide or alkyl hydroperoxides. BCP contains the
peroxidatic cysteine but appears not to possess a
resolving cysteine (some sequences, not all, contain a
second cysteine but its role is still unknown). Unlike
other PRXs, BCP exists as a monomer. The plant homolog
of BCP is PRX Q, which is expressed only in leaves and
is cellularly localized in the chloroplasts and the
guard cells of stomata. Also included in this subfamily
is the fungal nuclear protein, Dot5p (for disrupter of
telomere silencing protein 5), which functions as an
alkyl-hydroperoxide reductase during post-diauxic
growth.
Length = 140
Score = 27.1 bits (61), Expect = 1.2
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGG 72
++ KA G + ++ + + K L+DP+ + K GV E
Sbjct: 51 EEFKALGA-VVIGVSPDSVESHAKFAEKYGL--PFPLLSDPDGKLAKAYGVWGEKKKKYM 107
Query: 73 WRSKRYSMVVD-DGKITQL--NIEPDG 96
+R + ++D DGKI ++ ++P G
Sbjct: 108 G-IERSTFLIDPDGKIVKVWRKVKPKG 133
>gnl|CDD|173865 cd08500, PBP2_NikA_DppA_OppA_like_4, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 499
Score = 26.8 bits (60), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 46 KIRF-LADPNLEFTKKLGVEHEIPVLGGWRSKRYS 79
+RF L PN F L +IP LG W+ + Y+
Sbjct: 126 TVRFTLPAPNPLFLAYLAPP-DIPTLGPWKLESYT 159
>gnl|CDD|235679 PRK06032, fliH, flagellar assembly protein H; Validated.
Length = 199
Score = 26.1 bits (58), Expect = 3.8
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
Query: 28 VNDAFV------MEAWCRKNNAEGKIRFLADPNLE 56
VNDA V +E R++ EG++ LADP++
Sbjct: 134 VNDALVEAARERLERLARESGFEGRLVVLADPDMA 168
>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad
range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly bacterial and archaeal, and have
been inferred by homology as being related to both ArgE
and DapE.
Length = 393
Score = 25.6 bits (57), Expect = 6.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 73 WRSKRYSMVVDDGKITQLNIEPDGTGLTCSL 103
W++ + VV KI +E +G + SL
Sbjct: 92 WKTDPFKPVVKGDKIYGRGVEDNGQAIVSSL 122
>gnl|CDD|237578 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional.
Length = 400
Score = 25.6 bits (57), Expect = 7.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 70 LGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSL 103
L W + + VV DGKI E +G G+ SL
Sbjct: 93 LSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSL 126
>gnl|CDD|222900 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
Length = 576
Score = 25.5 bits (56), Expect = 8.0
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 51 ADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGL 99
+DP ++ + +G + + GG S VV T + I PD T L
Sbjct: 114 SDPTGQYPRYVGNDVNVLARGGEVGYDPSSVVIQDANTDVAINPDDTPL 162
>gnl|CDD|130941 TIGR01886, dipeptidase, dipeptidase PepV. This model represents a
small clade of dipeptidase enzymes which are members of
the larger M25 subfamily of metalloproteases. Two
characterized enzymes are included in the seed. One,
from Lactococcus lactis has been shown to act on a wide
range of dipeptides, but not larger peptides. The enzyme
from Lactobacillus delbrueckii was originally
characterized as a Xaa-His dipeptidase, specifically a
carnosinase (beta-Ala-His) by complementation of an E.
coli mutant. Further study, including the
crystallization of the enzyme , has shown it to also be
a non-specific dipeptidase. This group also includes
enzymes from Streptococcus and Enterococcus [Protein
fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 466
Score = 25.2 bits (55), Expect = 8.4
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 18 KGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLA-DPNLEFTKKLGVEHEIPVLGGWRSK 76
+ + A D F + + +N G + + A D L + V +P GW
Sbjct: 46 DALTKFLSFAERDGFTTKNF---DNYAGHVEYGAGDERLGIIGHMDV---VPAGEGWTRD 99
Query: 77 RYSMVVDDGKI 87
+ +D+G+I
Sbjct: 100 PFEPEIDEGRI 110
>gnl|CDD|220251 pfam09462, Mus7, Mus7/MMS22 family. This family includes a
conserved region from the Mus7 protein. Mus7 is involved
in the repair of replication-associated DNA damage in
the fission yeast Schizosaccharomyces pombe. Mus7
functions in the same pathway as Mus81, a subunit of the
Mus81-Eme1 structure-specific endonuclease, which has
been implicated in the repair of the
replication-associated DNA damage. The MMS22 proteins
are involved in repairing double-stranded DNA breaks
created by the cleavage reaction of topoisomerase II.
Length = 603
Score = 25.2 bits (55), Expect = 9.2
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 32 FVMEAWCRKNNAEGKIRF-------LADPNLEFTKKLGVEHEIPVLGGWRS---KRYSMV 81
F +E+W R N + +F L + + + E + VL W KR S +
Sbjct: 447 FGLESWARLRNTTLRRKFAPLFLANLLEKDASSFE----ECKEDVLSLWLDSLVKRVSSL 502
Query: 82 VDDGKITQL 90
+T+L
Sbjct: 503 KFQHSLTEL 511
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.425
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,647,979
Number of extensions: 480781
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 22
Length of query: 109
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 35
Effective length of database: 7,655,406
Effective search space: 267939210
Effective search space used: 267939210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)