RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5401
(109 letters)
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 168 bits (428), Expect = 2e-55
Identities = 49/106 (46%), Positives = 65/106 (61%), Gaps = 1/106 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
H+P YL+ K +G H I CIAVND FVM AW + + E KIR LAD + EFT+ L
Sbjct: 59 NNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRAL 118
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDE 106
G E + + RS+RY+M++DD KI ++ EPD TGL C L +
Sbjct: 119 GTELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEPDITGLACLLSIQ 164
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog,
DTT, oxidoreductase; 1.45A {Homo sapiens} PDB: 2vl3_A
1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 167 bits (425), Expect = 7e-55
Identities = 54/109 (49%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 61 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 120
Query: 62 GVE---HEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + + G R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 121 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 169
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A
{Arenicola marina}
Length = 167
Score = 165 bits (420), Expect = 4e-54
Identities = 51/107 (47%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPGY+ + + KG+ I C+AVND+FVM+AW + + A+ K++ LADP FTK +
Sbjct: 49 KTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAV 108
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+E ++ + RSKRYS+V++DG +T++N+EPDG GLTCSL +
Sbjct: 109 DMELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEPDGKGLTCSLAPNI 155
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 160 bits (407), Expect = 4e-52
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
H+P Y KAKG+ + C+A+ND + + AW K A+ I F D + F K L
Sbjct: 61 SKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSL 120
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ ++ G RS+R+S V DGK+ LN+E + + S + +
Sbjct: 121 ELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVSGAETI 167
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural
genomics, NEW YORK structura genomics research
consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 160 bits (407), Expect = 5e-52
Identities = 46/107 (42%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
HLPGYL + A+G+ +I +AVND VM AW + GKI FL+D N FTK +
Sbjct: 74 LNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAI 133
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
G+E ++ G RSKRYSM+V+DG + LNIE T S +
Sbjct: 134 GMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAM 180
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 157 bits (398), Expect = 1e-50
Identities = 44/107 (41%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
H+PGY+ + L+A GI EI+C++VNDAFVM AW R + GK+R +AD + FT L
Sbjct: 65 AQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAFTHAL 124
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
G+ ++ G G RS RY+MV+D G + L +E G S +
Sbjct: 125 GLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEAPG-KFEVSDAASV 170
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 154 bits (391), Expect = 8e-50
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
H+PG++ K +LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T L
Sbjct: 53 LKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHAL 112
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
G+E ++ G G RS+R++++VDD K+ NIE G T S +++
Sbjct: 113 GLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGE-FTVSSAEDI 158
>4dss_A Peroxiredoxin type-2; electron transport, oxidoreductase,
peroxiredoxin, alkyl hydroperoxid reductase; 2.10A
{Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A
Length = 176
Score = 146 bits (370), Expect = 2e-46
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 2 KTHLPGYLAKEKDL-KAKGIHEIFCIAVNDAFVMEAWCRKNNAEGK--IRFLADPNLEFT 58
+H+PGY+ +L K K + ++ + V++ F +AW + + I+F +DP FT
Sbjct: 64 VSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFT 123
Query: 59 KKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPD-GTGLTCSLVDEL 107
K +G E + G + S R++MVV++G +T E + GT +T S V+ +
Sbjct: 124 KSIGFELAVG-DGVYWSGRWAMVVENGIVTYAAKETNPGTDVTVSSVESV 172
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 142 bits (361), Expect = 4e-45
Identities = 23/98 (23%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 2 KTHLPGYLAK-EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 60
+PGY + + +K +I+CI ND +V+++W + + + KI++++D N FT
Sbjct: 61 TKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTDS 119
Query: 61 LGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGT 97
+ + + G R R+ +V++ + ++ E D
Sbjct: 120 MNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQ 157
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1
c.47.1.10
Length = 241
Score = 143 bits (362), Expect = 2e-44
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
+HLP Y K G+ +I ++VND FVM AW +E I F+ D N EFT+ +
Sbjct: 51 SSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSE-NISFIPDGNGEFTEGM 109
Query: 62 GVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTC 101
G+ LG G RS RYSM+V +G + ++ IEP+ G
Sbjct: 110 GMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPF 150
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 40.7 bits (96), Expect = 1e-05
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMV 81
++ ++++ F + +C N + + +D +K GV L G R +
Sbjct: 81 DVTVVSMDLPFAQKRFCESFNIQ-NVTVASDFRYRDMEKYGVLIGEGALKG-ILARAVFI 138
Query: 82 VD-DGKIT------QLNIEPD 95
+D +GK+ ++ EP+
Sbjct: 139 IDKEGKVAYVQLVPEITEEPN 159
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 38.8 bits (91), Expect = 6e-05
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVL 70
+ + + +I ++++ F W ++N + F L+D E ++ GV + V
Sbjct: 73 DEFEDRDA-QILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGV- 130
Query: 71 GGWRSKRYSMVVD-DGKITQLNIEPDGTG 98
+ R + +VD + +I ++ G
Sbjct: 131 ----ADRVTFIVDPNNEIQFVSATAGSVG 155
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 38.3 bits (89), Expect = 1e-04
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSM 80
++ I V+ + ++ I L+ +F K+ GV L G+ + +
Sbjct: 84 KLIVITVDSPSSLARARHEHGLP-NIALLSTLRGRDFHKRYGVLITEYPLSGY-TSPAII 141
Query: 81 VVD-DGKI--TQLNIEP 94
+ D + ++
Sbjct: 142 LADAANVVHYSERLANT 158
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 38.0 bits (89), Expect = 1e-04
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEH-EIPVLGGWRSKRYSM 80
+ C++ + F + +C E + + F + GV + P+ G R +
Sbjct: 77 TVLCVSKDLPFAQKRFCGAEGTE-NVMPASAFRDSFGEDYGVTIADGPMAGL--LARAIV 133
Query: 81 VVD-DGKIT 88
V+ DG +
Sbjct: 134 VIGADGNVA 142
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 38.0 bits (89), Expect = 1e-04
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLADP-NLEFTKKLGVEHEIPVLGGWRSKRYSM 80
++ I+ + F WC N + K+ L+D ++ F + GV I L R
Sbjct: 78 NVYTISADLPFAQARWCGANGID-KVETLSDHRDMSFGEAFGV--YIKELRL--LARSVF 132
Query: 81 VVD-DGKI--TQLNIEP 94
V+D +GK+ + E
Sbjct: 133 VLDENGKVVYAEYVSEA 149
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 38.1 bits (89), Expect = 1e-04
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSM 80
+ CI+ + F +C E + ++ N +LGV+ + L G + R +
Sbjct: 77 IVLCISADLPFAQARFCGAEGIE-NAKTVSTFRNHALHSQLGVDIQTGPLAGL-TSRAVI 134
Query: 81 VVD-DGKI--TQLNIEP 94
V+D + +QL E
Sbjct: 135 VLDEQNNVLHSQLVEEI 151
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 38.1 bits (89), Expect = 2e-04
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEH-EIPVLGGWRSKRYS 79
+ CI+ + F +C + L+ +F + GV E P+ G + R
Sbjct: 112 VVLCISSDLPFAQSRFCGAEGLS-NVITLSTLRGADFKQAYGVAITEGPLAGL--TARAV 168
Query: 80 MVVD-DGKIT------QLNIEPD 95
+V+D + ++ EP+
Sbjct: 169 VVLDGQDNVIYSELVNEITTEPN 191
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 37.6 bits (88), Expect = 2e-04
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 13/82 (15%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSM 80
+ I+ + F + WC + + L+D +L F + GV + L R
Sbjct: 79 IVLTISADLPFAQKRWCASAGLD-NVITLSDHRDLSFGENYGV--VMEELRL--LARAVF 133
Query: 81 VVD-DGKIT------QLNIEPD 95
V+D D K+ + PD
Sbjct: 134 VLDADNKVVYKEIVSEGTDFPD 155
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 36.7 bits (86), Expect = 4e-04
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
+LK G+ E++ ++ + FV +AW + A G I + + DP+ +++ V +E
Sbjct: 59 AELKKLGV-EVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNE 113
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 36.1 bits (84), Expect = 6e-04
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFLAD-PNLEFTKKLGVEHEIPVLGGWRSKRYSM 80
+ ++++ F + WC + L+D + F + + I R
Sbjct: 76 VVLTVSMDLPFAQKRWCGAEGLD-NAIMLSDYFDHSFGRDYAL--LINEWH--LLARAVF 130
Query: 81 VVD-DGKIT------QLNIEPD 95
V+D D I +N EP+
Sbjct: 131 VLDTDNTIRYVEYVDNINSEPN 152
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 34.4 bits (80), Expect = 0.002
Identities = 11/56 (19%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
++L+ G+ +++ ++ + F +AW + KI++ + DP T+ E
Sbjct: 58 EELQKLGV-DVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMRE 112
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 34.1 bits (79), Expect = 0.003
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
K E+ + + + W RK G + LAD + GV E
Sbjct: 64 KRFAEINT-EVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDE 121
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 33.7 bits (78), Expect = 0.005
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
K+ G E+ +++ + AW RK G++ LAD K GV E
Sbjct: 64 KEFSDIGC-EVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKE 121
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 33.8 bits (78), Expect = 0.005
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
K + +G ++ + + + + AW RK G I LAD N ++ GV E
Sbjct: 80 KKFEEQGA-QVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIE 137
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 33.8 bits (78), Expect = 0.005
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
++ ++ ++ + + + AW RK+ G ++ LAD E +K GV E
Sbjct: 97 EEFNSRNC-QVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDE 154
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 33.3 bits (77), Expect = 0.006
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
+D + G E+ ++V+ F AW RK G + LAD ++ GV
Sbjct: 62 EDFRKLGC-EVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKT 119
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 33.4 bits (77), Expect = 0.007
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
+ E+ ++V+ F AW RKN G + L+D + ++ GV E
Sbjct: 84 SEFHDVNC-EVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLE 141
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 33.4 bits (77), Expect = 0.007
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
KD + K + E+ I+V+ + AW + G + F ++D N + +K V ++
Sbjct: 84 KDFENKNV-ELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD 141
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 33.5 bits (77), Expect = 0.007
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
++ ++ E+ +V+ F AW R+ G IR L+D + +K GV E
Sbjct: 119 EEFRSINT-EVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 176
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
KD KG + ++++ V AW + G++ F +AD ++ V E
Sbjct: 61 KDFHEKGF-NVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE 118
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 33.4 bits (77), Expect = 0.007
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
+ +A E+ +V+ F AW RK G ++ L+D + +K GV E
Sbjct: 105 HEFRAINT-EVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLE 162
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
K + + E+ +V+ F AW G I+ ++D + + V
Sbjct: 59 DSFKERNV-ELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFN 116
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 33.0 bits (76), Expect = 0.008
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
+ + E+ +V+ + AW G I+ L+D +K V +
Sbjct: 80 DAFHERNV-ELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFD 137
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 33.0 bits (76), Expect = 0.009
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEHE 66
++ ++ E+ +V+ F AW R+ G IR L+D + +K GV E
Sbjct: 76 EEFRSINT-EVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLE 133
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A
{Arenicola marina} PDB: 2v32_A 2v41_A
Length = 233
Score = 30.3 bits (69), Expect = 0.078
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 22 EIFCIAVNDAFVMEAWCR----KNNAEGKIRF--LADPNLEFTKKLGVEH--EIPVLGGW 73
++ ++ ++ + W + +G + + +AD E KLG+ E G
Sbjct: 65 KLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMP 124
Query: 74 RSKRYSMVVD-DGKITQLNIEPDGTG 98
+ R ++ D K+ + P TG
Sbjct: 125 LTCRAVFIIGPDKKLKLSILYPATTG 150
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics,
structural genomics consortium, SGC; 2.30A {Plasmodium
yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Length = 220
Score = 29.5 bits (67), Expect = 0.14
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 8/85 (9%)
Query: 22 EIFCIAVNDAFVMEAWC---RKNNAEGKIRF--LADPNLEFTKKLGVEH--EIPVLGGWR 74
++ + N + W + K + D + E KL + E + G
Sbjct: 67 KLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPL 126
Query: 75 SKRYSMVVD-DGKITQLNIEPDGTG 98
+ R + + KI + P TG
Sbjct: 127 TCRCLFFISPEKKIKATVLYPATTG 151
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular
signaling, antioxidant; 2.00A {Homo sapiens} SCOP:
c.47.1.10
Length = 224
Score = 28.4 bits (64), Expect = 0.36
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAE------GKIRF--LADPNLEFTKKLGVEH--EIPVLG 71
++ ++++ AW + NA K+ F + D N E LG+ E G
Sbjct: 67 KLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKG 126
Query: 72 GWRSKRYSMVVD-DGKITQLNIEPDGTG 98
+ R V D K+ + P TG
Sbjct: 127 MPVTARVVFVFGPDKKLKLSILYPATTG 154
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 28.0 bits (63), Expect = 0.41
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVL 70
+ I+V+ F +A+ N + F L+D N E KK V E P L
Sbjct: 58 AKFNQVNA-VVLGISVDPPFSNKAFKEHNK----LNFTILSDYNREVVKKYNVAWEFPAL 112
Query: 71 GGWR-SKRYSMVVD-DGKITQ 89
G+ +KR V+D +GK+
Sbjct: 113 PGYVLAKRAVFVIDKEGKVRY 133
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide,
antioxidant, oxidoreductase, redox-active center; 1.65A
{Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A
2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Length = 249
Score = 27.7 bits (62), Expect = 0.63
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRF----LADPNLEFTKKLGVEHEIPVLGGWRSKR 77
++ ++V+ F W +R +ADP ++LG+ H + R
Sbjct: 69 DLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHA---ESATHTVR 125
Query: 78 YSMVVD-DGKITQLNIEPDGTG 98
+VD G I + P G
Sbjct: 126 GVFIVDARGVIRTMLYYPMELG 147
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 26.1 bits (58), Expect = 2.1
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 14 DLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF--LADPNLEFTKKLGVEHEIPVLG 71
L+ E+ I+V+ + ++ + +N + F L+D N E K V HE
Sbjct: 62 QLEKANA-EVLAISVDSPWCLKKFKDENR----LAFNLLSDYNREVIKLYNVYHEDLKGL 116
Query: 72 GWRSKRYSMVVD-DGKITQ 89
+KR +V DG +
Sbjct: 117 KMVAKRAVFIVKPDGTVAY 135
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 25.8 bits (57), Expect = 3.1
Identities = 3/23 (13%), Positives = 8/23 (34%), Gaps = 1/23 (4%)
Query: 13 KDLKAKGIHEIFCIAVNDAFVME 35
+ G ++ + V D +
Sbjct: 131 NRSRDLGA-IVYAVGVKDFNETQ 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.425
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,768,739
Number of extensions: 96685
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 46
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)