RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5401
(109 letters)
>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 179
Score = 78.6 bits (193), Expect = 2e-20
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 1 MKTHLPGYLAK-EKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTK 59
+PGY + + +K +I+CI ND +V+++W + + + KI++++D N FT
Sbjct: 59 STKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIK-KIKYISDGNSSFTD 117
Query: 60 KLGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGT 97
+ + + G R R+ +V++ + ++ E D
Sbjct: 118 SMNMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQ 156
>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 64.9 bits (157), Expect = 4e-15
Identities = 53/109 (48%), Positives = 72/109 (66%), Gaps = 3/109 (2%)
Query: 2 KTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKL 61
KTHLPG++ + + LKAKG+ + C++VNDAFV W R + AEGK+R LADP F K+
Sbjct: 49 KTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET 108
Query: 62 GVEHEIPVLGG---WRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
+ + ++ R KR+SMVV DG + LN+EPDGTGLTCSL +
Sbjct: 109 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNI 157
>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam
poplar(Populus trichocarpa) [TaxId: 3694]}
Length = 162
Score = 62.6 bits (151), Expect = 3e-14
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 1 MKTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 60
H+PG++ K +LK+KG+ EI CI+VND FVM+AW + ++FLAD + +T
Sbjct: 52 SLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHA 111
Query: 61 LGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTCSLVDEL 107
LG+E ++ G G RS+R++++VDD K+ NIE G T S +++
Sbjct: 112 LGLELDLQEKGLGTRSRRFALLVDDLKVKAANIEGGGE-FTVSSAEDI 158
>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 163
Score = 49.1 bits (116), Expect = 4e-09
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 1 MKTHLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKK 60
+HLP Y K G+ +I ++VND FVM AW I F+ D N EFT+
Sbjct: 48 SSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEK-SENISFIPDGNGEFTEG 106
Query: 61 LGVEHEIPVLG-GWRSKRYSMVVDDGKITQLNIEPDGTGLTC 101
+G+ LG G RS RYSM+V +G + ++ IEP+ G
Sbjct: 107 MGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPF 148
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 42.5 bits (99), Expect = 1e-06
Identities = 13/90 (14%), Positives = 28/90 (31%)
Query: 8 YLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEI 67
+ + CI+ + F +C I N EF + GV
Sbjct: 64 VRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIAD 123
Query: 68 PVLGGWRSKRYSMVVDDGKITQLNIEPDGT 97
L G ++ ++ ++ + + + T
Sbjct: 124 GPLKGLAARAVVVIDENDNVIFSQLVDEIT 153
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 34.4 bits (78), Expect = 0.001
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 10/98 (10%)
Query: 7 GYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIR-----FLADPNLEFTKKL 61
+ + E+ +++ + AW G + LAD K
Sbjct: 54 CQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKSY 113
Query: 62 GVEHEIPVLGGWRSKRYSMVVD-DGKITQLNIEPDGTG 98
GV E + R ++D + Q+ + G
Sbjct: 114 GVLKE----EDGVAYRGLFIIDPKQNLRQITVNDLPVG 147
>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId:
56636]}
Length = 237
Score = 30.9 bits (69), Expect = 0.019
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 3 THLPGYLAKEKDLKAKGIHEIFCIAVNDAFVMEAWCRKNNAEGKIRF----LADPNLEFT 58
T + + +D + G+ + ++V+ F W +R +ADP
Sbjct: 47 TEFVSFARRYEDFQRLGVD-LIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA 105
Query: 59 KKLGVEHEIPVLGGWRSKRYSMVVDDGKITQLNIEPDGTG 98
++LG+ H R +V G I + P G
Sbjct: 106 RRLGLLHAESATHTVRG--VFIVDARGVIRTMLYYPMELG 143
>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 156
Score = 25.7 bits (55), Expect = 1.2
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 23 IFCIAVNDAFVMEAWCRKNNAEGKIRFLADPNLEFTKKLGVEHEIPVLGGWRSKRYSMVV 82
+F ++ + + + K N L+DP EF LG + S R +
Sbjct: 69 VFGLSADSVTSQKKFQSKQN--LPYHLLSDPKREFIGLLGAKKT----PLSGSIRSHFIF 122
Query: 83 DDGKITQLNIEPDGTGLTCSLVDEL 107
DGK+ ++ E+
Sbjct: 123 VDGKLKFKRVKISPEVSVNDAKKEV 147
>d1k0ha_ b.106.1.2 (A:) Tail attachment protein gpF3 {Bacteriophage
lambda [TaxId: 10710]}
Length = 117
Score = 24.8 bits (54), Expect = 1.7
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 75 SKRYSMVVDDGKITQLNIEPDGTGLT 100
+ ++ + + + PD G
Sbjct: 76 RRGDTLTIGEENFWVDRVSPDDGGSC 101
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 24.8 bits (53), Expect = 2.3
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 11/83 (13%)
Query: 22 EIFCIAVNDAFVMEAWCRKNNAEGKIRFL-----ADPNLEFTKKLGVEHEIPVLGGWRSK 76
+ ++++ V AW +G I + AD ++ V E +
Sbjct: 69 NVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-----EAIAL 123
Query: 77 RYSMVVD-DGKITQLNIEPDGTG 98
R + ++D + K+ I G
Sbjct: 124 RGAFLIDKNMKVRHAVINDLPLG 146
>d3bmva3 b.71.1.1 (A:407-495) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 89
Score = 23.3 bits (50), Expect = 4.6
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 69 VLGGWRSKRYSMVVDDGKITQLNIEPDGT 97
VLGG + V DG +T +
Sbjct: 53 VLGGLLNGNSISVASDGSVTPFTLSAGEV 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.425
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 435,992
Number of extensions: 18736
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 14
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)