Query psy5402
Match_columns 198
No_of_seqs 239 out of 1130
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 16:35:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08150 enoyl-CoA hydratase; 100.0 2.9E-44 6.4E-49 298.1 21.2 186 1-198 56-248 (255)
2 PRK09076 enoyl-CoA hydratase; 100.0 4.3E-44 9.4E-49 297.5 20.6 186 1-198 59-251 (258)
3 PRK05862 enoyl-CoA hydratase; 100.0 5.4E-44 1.2E-48 296.7 21.1 186 1-198 60-250 (257)
4 PLN02600 enoyl-CoA hydratase 100.0 4.8E-44 1E-48 296.2 20.7 186 1-198 52-244 (251)
5 PRK05980 enoyl-CoA hydratase; 100.0 3.9E-44 8.5E-49 298.0 20.2 186 1-198 60-256 (260)
6 PRK06143 enoyl-CoA hydratase; 100.0 6E-44 1.3E-48 296.4 20.9 185 1-198 64-255 (256)
7 TIGR02280 PaaB1 phenylacetate 100.0 8.5E-44 1.8E-48 295.4 21.1 186 1-198 54-249 (256)
8 PRK07657 enoyl-CoA hydratase; 100.0 1.4E-43 3.1E-48 294.7 20.5 186 1-198 61-253 (260)
9 PRK09245 enoyl-CoA hydratase; 100.0 1.7E-43 3.8E-48 295.0 20.9 186 1-198 60-259 (266)
10 PRK08140 enoyl-CoA hydratase; 100.0 2.1E-43 4.5E-48 293.9 21.2 186 1-198 59-255 (262)
11 PRK09674 enoyl-CoA hydratase-i 100.0 1.9E-43 4E-48 293.3 20.7 186 1-198 58-248 (255)
12 PRK07658 enoyl-CoA hydratase; 100.0 1.4E-43 3.1E-48 294.1 20.0 186 1-198 57-250 (257)
13 PRK06142 enoyl-CoA hydratase; 100.0 1.3E-43 2.9E-48 296.6 19.7 186 1-198 62-266 (272)
14 PRK08138 enoyl-CoA hydratase; 100.0 2.6E-43 5.7E-48 293.3 20.9 186 1-198 64-254 (261)
15 PRK05809 3-hydroxybutyryl-CoA 100.0 2.8E-43 6.1E-48 292.8 21.1 186 1-198 61-253 (260)
16 PRK06563 enoyl-CoA hydratase; 100.0 2.5E-43 5.5E-48 292.4 20.3 186 1-198 55-248 (255)
17 PRK08258 enoyl-CoA hydratase; 100.0 3.6E-43 7.9E-48 294.7 21.5 186 1-198 73-270 (277)
18 PLN02664 enoyl-CoA hydratase/d 100.0 2.4E-43 5.3E-48 295.5 19.9 186 1-198 64-268 (275)
19 KOG1680|consensus 100.0 4.3E-44 9.2E-49 292.1 14.7 185 2-198 94-283 (290)
20 PRK07260 enoyl-CoA hydratase; 100.0 3.8E-43 8.3E-48 291.3 20.6 186 1-198 58-254 (255)
21 PRK06127 enoyl-CoA hydratase; 100.0 4.6E-43 1E-47 293.0 20.9 186 1-198 68-262 (269)
22 PRK09120 p-hydroxycinnamoyl Co 100.0 4.3E-43 9.2E-48 294.1 20.6 186 1-198 64-263 (275)
23 PRK05981 enoyl-CoA hydratase; 100.0 4.8E-43 1E-47 292.4 20.8 186 1-198 61-259 (266)
24 PRK06023 enoyl-CoA hydratase; 100.0 7.8E-43 1.7E-47 288.9 21.0 184 1-197 62-251 (251)
25 PRK08139 enoyl-CoA hydratase; 100.0 7.3E-43 1.6E-47 291.4 20.9 185 1-198 67-259 (266)
26 PRK07511 enoyl-CoA hydratase; 100.0 9.7E-43 2.1E-47 289.6 21.4 186 1-198 59-254 (260)
27 PLN02888 enoyl-CoA hydratase 100.0 9E-43 2E-47 290.7 21.0 186 1-198 66-257 (265)
28 PRK06688 enoyl-CoA hydratase; 100.0 1.1E-42 2.3E-47 289.1 20.8 186 1-198 61-252 (259)
29 PF00378 ECH: Enoyl-CoA hydrat 100.0 8.5E-43 1.8E-47 287.3 20.1 185 1-197 54-245 (245)
30 PRK07468 enoyl-CoA hydratase; 100.0 1.2E-42 2.7E-47 289.4 20.8 185 1-198 61-255 (262)
31 PRK07659 enoyl-CoA hydratase; 100.0 1.1E-42 2.3E-47 289.5 20.1 185 1-198 61-253 (260)
32 PRK06494 enoyl-CoA hydratase; 100.0 1.2E-42 2.5E-47 289.1 20.1 185 1-198 61-252 (259)
33 PRK05995 enoyl-CoA hydratase; 100.0 1.8E-42 3.8E-47 288.4 21.1 185 1-198 60-255 (262)
34 PRK03580 carnitinyl-CoA dehydr 100.0 1.4E-42 3E-47 288.9 20.2 186 1-198 59-254 (261)
35 TIGR01929 menB naphthoate synt 100.0 1.2E-42 2.5E-47 289.1 19.5 185 1-198 60-252 (259)
36 PRK07799 enoyl-CoA hydratase; 100.0 1.4E-42 3E-47 289.2 19.3 185 1-198 61-256 (263)
37 PRK08252 enoyl-CoA hydratase; 100.0 2E-42 4.3E-47 286.9 20.1 184 1-198 59-247 (254)
38 PLN03214 probable enoyl-CoA hy 100.0 1.8E-42 4E-47 290.6 20.0 185 1-197 69-263 (278)
39 PRK06210 enoyl-CoA hydratase; 100.0 2E-42 4.4E-47 289.4 20.0 186 1-198 62-265 (272)
40 PRK11423 methylmalonyl-CoA dec 100.0 2.2E-42 4.9E-47 287.7 20.0 186 1-198 61-254 (261)
41 TIGR03210 badI 2-ketocyclohexa 100.0 3.1E-42 6.8E-47 286.1 20.1 185 1-198 59-249 (256)
42 PRK05674 gamma-carboxygeranoyl 100.0 3.1E-42 6.8E-47 287.4 19.8 185 1-198 62-257 (265)
43 PRK07938 enoyl-CoA hydratase; 100.0 3.6E-42 7.8E-47 284.7 19.5 183 1-198 57-247 (249)
44 PRK08259 enoyl-CoA hydratase; 100.0 3.9E-42 8.4E-47 285.2 19.7 185 1-198 59-248 (254)
45 PRK05870 enoyl-CoA hydratase; 100.0 3E-42 6.4E-47 285.2 18.8 183 1-197 59-249 (249)
46 PRK07396 dihydroxynaphthoic ac 100.0 6.4E-42 1.4E-46 286.6 20.7 185 1-198 70-262 (273)
47 PRK07327 enoyl-CoA hydratase; 100.0 8.3E-42 1.8E-46 285.3 20.1 182 1-198 68-261 (268)
48 PRK06144 enoyl-CoA hydratase; 100.0 6.9E-42 1.5E-46 284.9 19.5 182 1-198 65-255 (262)
49 PRK05864 enoyl-CoA hydratase; 100.0 8.5E-42 1.8E-46 286.3 20.1 186 1-198 66-268 (276)
50 PRK06495 enoyl-CoA hydratase; 100.0 1.1E-41 2.3E-46 283.0 20.4 183 1-198 59-250 (257)
51 PRK08260 enoyl-CoA hydratase; 100.0 1.2E-41 2.5E-46 288.1 20.2 185 1-198 60-271 (296)
52 TIGR03189 dienoyl_CoA_hyt cycl 100.0 3.6E-41 7.7E-46 279.1 20.2 182 2-198 57-244 (251)
53 PRK07854 enoyl-CoA hydratase; 100.0 4E-41 8.7E-46 277.5 20.1 180 1-198 55-236 (243)
54 PRK07509 enoyl-CoA hydratase; 100.0 3.4E-41 7.5E-46 280.5 19.8 184 1-198 59-256 (262)
55 PLN02921 naphthoate synthase 100.0 5E-41 1.1E-45 287.2 21.0 185 1-198 124-316 (327)
56 PRK06072 enoyl-CoA hydratase; 100.0 8.1E-41 1.8E-45 276.4 20.7 182 1-198 56-241 (248)
57 PRK08321 naphthoate synthase; 100.0 1.2E-40 2.6E-45 282.6 20.7 185 1-198 88-291 (302)
58 PRK07827 enoyl-CoA hydratase; 100.0 9.5E-41 2.1E-45 277.7 19.1 183 1-198 62-254 (260)
59 PRK07110 polyketide biosynthes 100.0 1.8E-40 3.9E-45 274.5 20.2 182 1-194 61-246 (249)
60 COG1024 CaiD Enoyl-CoA hydrata 100.0 1.4E-40 2.9E-45 276.3 19.3 183 1-196 61-252 (257)
61 PRK06190 enoyl-CoA hydratase; 100.0 3.2E-40 7E-45 274.3 21.0 185 1-197 60-252 (258)
62 PRK07112 polyketide biosynthes 100.0 2.8E-40 6.1E-45 274.3 19.8 182 1-198 58-248 (255)
63 PRK05617 3-hydroxyisobutyryl-C 100.0 1.8E-40 3.9E-45 285.7 14.6 184 1-197 60-317 (342)
64 PRK12478 enoyl-CoA hydratase; 100.0 2.2E-39 4.7E-44 274.4 19.1 162 21-198 103-274 (298)
65 TIGR03222 benzo_boxC benzoyl-C 100.0 3E-39 6.4E-44 291.1 18.0 185 2-198 330-537 (546)
66 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.1E-39 4.6E-44 292.7 16.9 185 2-198 334-541 (550)
67 PLN02874 3-hydroxyisobutyryl-C 100.0 1.5E-38 3.2E-43 277.1 16.9 184 1-197 67-330 (379)
68 KOG1679|consensus 100.0 4.4E-39 9.5E-44 254.2 10.0 186 1-198 88-284 (291)
69 PRK11730 fadB multifunctional 100.0 1.3E-37 2.9E-42 289.7 19.8 186 1-198 63-297 (715)
70 PRK05869 enoyl-CoA hydratase; 100.0 1E-37 2.2E-42 254.1 16.5 151 1-163 63-220 (222)
71 PRK06213 enoyl-CoA hydratase; 100.0 4E-37 8.6E-42 251.6 16.7 166 1-177 56-227 (229)
72 PRK11154 fadJ multifunctional 100.0 5.8E-37 1.3E-41 285.2 19.9 186 1-197 64-293 (708)
73 PRK08788 enoyl-CoA hydratase; 100.0 2.2E-36 4.9E-41 254.4 19.0 182 1-195 78-274 (287)
74 PLN02157 3-hydroxyisobutyryl-C 100.0 1.5E-36 3.1E-41 265.2 18.2 179 1-194 93-282 (401)
75 PRK08290 enoyl-CoA hydratase; 100.0 2.8E-36 6.1E-41 254.3 18.2 154 19-186 107-262 (288)
76 TIGR02440 FadJ fatty oxidation 100.0 3E-36 6.6E-41 280.0 18.9 186 1-197 59-288 (699)
77 PRK08272 enoyl-CoA hydratase; 100.0 2.2E-35 4.7E-40 250.4 18.2 132 19-165 116-247 (302)
78 KOG0016|consensus 100.0 4.2E-35 9.1E-40 237.3 16.0 185 2-198 65-263 (266)
79 TIGR03200 dearomat_oah 6-oxocy 100.0 1.2E-34 2.5E-39 247.8 17.8 149 1-161 85-257 (360)
80 PLN02267 enoyl-CoA hydratase/i 100.0 5.2E-34 1.1E-38 234.6 16.1 153 1-164 56-221 (239)
81 TIGR02437 FadB fatty oxidation 100.0 1.7E-33 3.6E-38 262.0 19.4 186 1-198 63-297 (714)
82 KOG1681|consensus 100.0 8.1E-35 1.8E-39 231.7 7.5 186 1-198 78-284 (292)
83 PLN02988 3-hydroxyisobutyryl-C 100.0 1.3E-32 2.9E-37 239.3 19.0 183 1-196 65-328 (381)
84 TIGR02441 fa_ox_alpha_mit fatt 100.0 1.3E-32 2.8E-37 256.7 18.3 186 1-197 71-320 (737)
85 PLN02851 3-hydroxyisobutyryl-C 100.0 1.3E-31 2.9E-36 234.1 19.8 183 1-196 98-361 (407)
86 COG0447 MenB Dihydroxynaphthoi 100.0 1.7E-31 3.7E-36 211.3 7.8 166 20-198 106-271 (282)
87 KOG1682|consensus 100.0 2.3E-30 5E-35 203.4 12.7 185 1-198 88-280 (287)
88 cd06558 crotonase-like Crotona 100.0 1.1E-29 2.4E-34 201.8 13.2 131 1-143 55-194 (195)
89 TIGR03222 benzo_boxC benzoyl-C 100.0 1.6E-29 3.5E-34 228.0 13.7 138 1-149 79-231 (546)
90 PRK08184 benzoyl-CoA-dihydrodi 100.0 4.5E-29 9.8E-34 225.7 13.9 139 1-150 83-236 (550)
91 KOG1684|consensus 99.9 3.4E-24 7.3E-29 180.7 11.1 182 2-196 96-357 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.8 1.2E-20 2.6E-25 149.9 10.1 105 20-136 48-172 (187)
93 cd07014 S49_SppA Signal peptid 99.8 5E-19 1.1E-23 139.4 9.3 118 2-136 48-175 (177)
94 cd07016 S14_ClpP_1 Caseinolyti 99.6 1.8E-15 3.9E-20 117.2 9.7 96 20-127 48-160 (160)
95 cd07019 S49_SppA_1 Signal pept 99.5 1.8E-14 3.8E-19 116.6 6.1 56 1-61 46-101 (211)
96 TIGR00705 SppA_67K signal pept 99.5 2E-14 4.4E-19 131.7 7.2 127 17-153 365-531 (584)
97 cd00394 Clp_protease_like Case 99.4 7.4E-13 1.6E-17 102.4 9.1 97 19-127 46-161 (161)
98 cd07022 S49_Sppa_36K_type Sign 99.3 1.7E-11 3.7E-16 99.3 9.7 39 22-60 63-103 (214)
99 cd07023 S49_Sppa_N_C Signal pe 99.3 9.4E-12 2E-16 100.3 8.1 54 2-60 43-96 (208)
100 cd07021 Clp_protease_NfeD_like 99.3 1.6E-11 3.5E-16 96.9 9.0 105 17-133 45-175 (178)
101 TIGR00706 SppA_dom signal pept 99.3 4.5E-11 9.8E-16 96.4 11.6 120 19-139 48-204 (207)
102 cd07015 Clp_protease_NfeD Nodu 99.0 6.9E-09 1.5E-13 81.4 10.8 100 19-130 47-165 (172)
103 cd07018 S49_SppA_67K_type Sign 98.9 3.7E-09 8.1E-14 86.1 6.5 118 17-136 65-219 (222)
104 cd07013 S14_ClpP Caseinolytic 98.8 3.3E-08 7.1E-13 76.9 9.8 97 19-127 47-162 (162)
105 PRK00277 clpP ATP-dependent Cl 98.8 3.1E-08 6.6E-13 79.6 8.5 99 20-130 79-196 (200)
106 PRK12319 acetyl-CoA carboxylas 98.8 1.5E-07 3.3E-12 78.1 12.7 106 3-130 107-214 (256)
107 CHL00198 accA acetyl-CoA carbo 98.7 8.1E-07 1.8E-11 75.7 13.7 106 3-130 163-270 (322)
108 PRK10949 protease 4; Provision 98.7 3.9E-08 8.5E-13 90.9 6.2 126 17-147 383-542 (618)
109 PRK11778 putative inner membra 98.6 1.3E-07 2.8E-12 81.1 7.6 116 23-138 147-294 (330)
110 PRK12553 ATP-dependent Clp pro 98.6 3.2E-07 7E-12 74.1 9.3 98 19-130 82-202 (207)
111 PLN03230 acetyl-coenzyme A car 98.6 1.4E-06 2.9E-11 76.4 13.0 93 16-130 245-337 (431)
112 PRK14512 ATP-dependent Clp pro 98.6 6E-07 1.3E-11 72.0 10.0 103 20-134 71-193 (197)
113 TIGR00513 accA acetyl-CoA carb 98.6 1.6E-06 3.4E-11 74.0 12.9 93 16-130 175-267 (316)
114 cd07017 S14_ClpP_2 Caseinolyti 98.6 3.2E-07 6.9E-12 71.8 8.2 96 20-127 57-171 (171)
115 KOG1683|consensus 98.5 9.5E-09 2.1E-13 88.1 -0.9 184 2-197 113-315 (380)
116 PRK05724 acetyl-CoA carboxylas 98.5 3.6E-06 7.8E-11 71.8 13.8 93 16-130 175-267 (319)
117 PLN03229 acetyl-coenzyme A car 98.5 2.1E-06 4.6E-11 79.5 13.1 119 16-156 266-397 (762)
118 PF00574 CLP_protease: Clp pro 98.5 1.4E-07 3.1E-12 74.3 4.9 99 19-129 63-180 (182)
119 CHL00028 clpP ATP-dependent Cl 98.4 1.9E-06 4.1E-11 69.2 9.6 99 20-130 78-196 (200)
120 PF01343 Peptidase_S49: Peptid 98.4 3.2E-08 6.8E-13 76.2 -0.9 115 26-140 2-150 (154)
121 TIGR00493 clpP ATP-dependent C 98.4 3.4E-06 7.5E-11 67.3 9.6 98 20-129 74-190 (191)
122 TIGR03133 malonate_beta malona 98.3 8.5E-06 1.9E-10 68.3 11.9 113 3-139 108-228 (274)
123 PRK14514 ATP-dependent Clp pro 98.3 4.5E-06 9.9E-11 67.9 9.7 98 20-129 102-218 (221)
124 PRK12551 ATP-dependent Clp pro 98.3 5.1E-06 1.1E-10 66.5 9.6 99 20-130 73-190 (196)
125 PRK14513 ATP-dependent Clp pro 98.3 5.7E-06 1.2E-10 66.4 9.9 98 20-131 75-193 (201)
126 COG0616 SppA Periplasmic serin 98.3 5.8E-07 1.3E-11 77.0 4.4 117 18-137 117-269 (317)
127 PRK07189 malonate decarboxylas 98.1 2.7E-05 5.9E-10 66.0 10.0 104 3-131 117-227 (301)
128 PRK05654 acetyl-CoA carboxylas 98.1 7.2E-05 1.6E-09 63.4 12.0 98 23-149 187-285 (292)
129 TIGR00515 accD acetyl-CoA carb 97.9 0.00018 3.8E-09 60.8 11.2 95 23-146 186-281 (285)
130 COG0740 ClpP Protease subunit 97.9 0.00011 2.4E-09 58.7 9.1 99 21-132 76-194 (200)
131 PF01972 SDH_sah: Serine dehyd 97.9 0.00014 3E-09 60.7 9.7 59 18-88 106-164 (285)
132 CHL00174 accD acetyl-CoA carbo 97.8 0.00051 1.1E-08 58.1 11.6 87 28-143 205-292 (296)
133 TIGR03134 malonate_gamma malon 97.7 0.00022 4.9E-09 58.7 9.1 96 16-132 90-191 (238)
134 PRK12552 ATP-dependent Clp pro 97.7 0.00027 5.8E-09 57.6 8.7 99 20-130 97-214 (222)
135 COG1030 NfeD Membrane-bound se 97.6 0.00053 1.1E-08 60.6 9.2 103 16-130 71-188 (436)
136 COG0825 AccA Acetyl-CoA carbox 97.5 0.00069 1.5E-08 56.8 9.2 93 16-130 174-266 (317)
137 TIGR01117 mmdA methylmalonyl-C 97.5 0.0014 3.1E-08 59.7 11.3 112 17-146 375-497 (512)
138 PF13766 ECH_C: 2-enoyl-CoA Hy 97.4 0.00068 1.5E-08 50.0 7.0 62 135-196 31-92 (118)
139 PLN02820 3-methylcrotonyl-CoA 97.3 0.0023 4.9E-08 59.1 10.6 86 26-144 201-294 (569)
140 TIGR01117 mmdA methylmalonyl-C 97.2 0.0022 4.7E-08 58.6 9.5 109 3-145 126-244 (512)
141 PF01039 Carboxyl_trans: Carbo 97.2 0.0021 4.5E-08 58.5 8.5 88 23-144 125-220 (493)
142 TIGR00705 SppA_67K signal pept 97.0 0.008 1.7E-07 55.8 10.6 43 18-61 114-156 (584)
143 PLN02820 3-methylcrotonyl-CoA 96.5 0.041 8.9E-07 50.9 11.8 114 15-147 424-557 (569)
144 COG4799 Acetyl-CoA carboxylase 96.4 0.0041 8.9E-08 56.5 4.5 31 30-60 163-193 (526)
145 PRK10949 protease 4; Provision 96.4 0.03 6.6E-07 52.3 10.3 44 17-61 132-175 (618)
146 PF01039 Carboxyl_trans: Carbo 96.2 0.02 4.3E-07 52.1 7.6 115 15-148 352-482 (493)
147 COG0777 AccD Acetyl-CoA carbox 95.4 0.092 2E-06 44.0 7.9 100 21-149 186-286 (294)
148 PLN02157 3-hydroxyisobutyryl-C 95.1 0.098 2.1E-06 46.4 7.8 61 136-196 293-356 (401)
149 KOG0840|consensus 93.3 0.54 1.2E-05 39.1 7.8 91 22-129 142-256 (275)
150 COG4799 Acetyl-CoA carboxylase 88.1 2.6 5.6E-05 38.7 7.8 111 18-147 385-511 (526)
151 PF06833 MdcE: Malonate decarb 79.1 21 0.00046 29.4 8.9 91 19-130 94-187 (234)
152 KOG0540|consensus 78.1 8.9 0.00019 34.6 6.8 105 20-148 412-525 (536)
153 smart00250 PLEC Plectin repeat 74.0 3 6.4E-05 24.0 2.0 18 109-126 18-35 (38)
154 PF00681 Plectin: Plectin repe 67.8 1.8 4E-05 26.0 0.1 20 108-127 17-36 (45)
155 KOG0033|consensus 32.4 69 0.0015 27.2 3.9 91 100-198 198-296 (355)
156 KOG0333|consensus 29.1 58 0.0013 30.4 3.1 31 30-60 350-381 (673)
157 COG0412 Dienelactone hydrolase 29.0 89 0.0019 25.4 4.0 37 18-54 95-133 (236)
158 PF01738 DLH: Dienelactone hyd 27.4 1.2E+02 0.0025 23.8 4.4 37 18-54 81-119 (218)
159 COG1618 Predicted nucleotide k 26.6 83 0.0018 24.8 3.2 25 16-40 116-140 (179)
160 COG1582 FlgEa Uncharacterized 22.9 87 0.0019 20.5 2.3 22 21-42 17-38 (67)
161 PLN03037 lipase class 3 family 22.9 85 0.0018 29.0 3.1 27 31-57 316-342 (525)
162 PF02601 Exonuc_VII_L: Exonucl 20.9 80 0.0017 26.7 2.4 39 20-60 97-135 (319)
No 1
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-44 Score=298.11 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=173.6
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 56 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a 123 (255)
T PRK08150 56 HFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES------------T 123 (255)
T ss_pred ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC------------C
Confidence 489999999875321 234567788999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|..+|++++++|+.|+|+||+++||||++||++++.+++.+++++++..||.+++
T Consensus 124 ~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 203 (255)
T PRK08150 124 YFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNF 203 (255)
T ss_pred EEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus 204 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~~kr 248 (255)
T PRK08150 204 AVLNALPRIADMSADDGLFVESLMAAVAQSAPEAKERLRAFLEKK 248 (255)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence 999999987777888888889888899999999999999999987
No 2
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.3e-44 Score=297.52 Aligned_cols=186 Identities=20% Similarity=0.274 Sum_probs=173.8
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a 126 (258)
T PRK09076 59 FFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ------------A 126 (258)
T ss_pred ceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC------------C
Confidence 389999999874321 224566788999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|..++++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.+++
T Consensus 127 ~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~ 206 (258)
T PRK09076 127 QMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVA 206 (258)
T ss_pred EeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus 207 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr 251 (258)
T PRK09076 207 ACKTLIQAARNGPRAAALALERELFVDLFDTEDQREGVNAFLEKR 251 (258)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence 999999987777889999999999999999999999999999987
No 3
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.4e-44 Score=296.72 Aligned_cols=186 Identities=24% Similarity=0.306 Sum_probs=174.1
Q ss_pred CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... ...+.+++.+|..+||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f 127 (257)
T PRK05862 60 AFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT------------AKF 127 (257)
T ss_pred ceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC------------CEE
Confidence 389999999875321 123455778899999999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|++++|++++|..++++++++|+.++|+||+++||||+++|++++.+++.++++++++.+|.+++.+
T Consensus 128 ~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~ 207 (257)
T PRK05862 128 GQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMA 207 (257)
T ss_pred eCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus 208 K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~e~i~af~~kr 250 (257)
T PRK05862 208 KEAVNRAYETTLAEGLLFERRLFHSLFATEDQKEGMAAFVEKR 250 (257)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccC
Confidence 9999988777899999999999999999999999999999987
No 4
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=4.8e-44 Score=296.18 Aligned_cols=186 Identities=22% Similarity=0.304 Sum_probs=173.8
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+++++.++..+||||||+|||+|+|||++|+++||+||++++ +
T Consensus 52 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~------------a 119 (251)
T PLN02600 52 VFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE------------A 119 (251)
T ss_pred ceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC------------C
Confidence 389999999874311 223456788899999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|++++.+++.++++++++.||.+++
T Consensus 120 ~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~ 199 (251)
T PLN02600 120 VFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIK 199 (251)
T ss_pred EEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus 200 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr 244 (251)
T PLN02600 200 MAKKAINEGSEVDMASGLEIEEECYEQVLKTKDRLEGLAAFAEKR 244 (251)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Confidence 999999988777899999999999999999999999999999987
No 5
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-44 Score=298.00 Aligned_cols=186 Identities=24% Similarity=0.290 Sum_probs=173.1
Q ss_pred CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++... ....+++++.++..+||||||+|||+|+|||++|+++||+||++++
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~--------- 130 (260)
T PRK05980 60 AFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER--------- 130 (260)
T ss_pred ceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC---------
Confidence 48999999986431 0112346778899999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+|+|++++.+++.++++++++.||
T Consensus 131 ---a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p 207 (260)
T PRK05980 131 ---ALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSP 207 (260)
T ss_pred ---CEecCcccccCCCCCchHhhHHHhhcCHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+++.+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus 208 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 256 (260)
T PRK05980 208 VAVAAILTAVTRGLNLSIAEGLLIESEQFARMAGSADLREGLAAWIERR 256 (260)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhccC
Confidence 9999999999988777889999999999999999999999999999987
No 6
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6e-44 Score=296.39 Aligned_cols=185 Identities=26% Similarity=0.325 Sum_probs=172.5
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+++++..|.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a 131 (256)
T PRK06143 64 AFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD------------A 131 (256)
T ss_pred cccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC------------C
Confidence 489999999874321 234567888999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|+ |++++++++++++|..+|++++++|+.++|+||+++||||++||++++.+++.+++++++..||.+++
T Consensus 132 ~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 210 (256)
T PRK06143 132 QFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALR 210 (256)
T ss_pred EEeCCccccCC-CCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998 77788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus 211 ~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr 255 (256)
T PRK06143 211 QQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMAAFLNRK 255 (256)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhc
Confidence 999999988778899999999999999999999999999999987
No 7
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=8.5e-44 Score=295.41 Aligned_cols=186 Identities=23% Similarity=0.357 Sum_probs=172.9
Q ss_pred CCCCccCchhhhhhh------HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTDT------SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~------~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++.... .. .+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 54 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~---------- 123 (256)
T TIGR02280 54 GFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES---------- 123 (256)
T ss_pred CcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC----------
Confidence 489999999875321 11 1345677899999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++.+++.++++++++.||.
T Consensus 124 --a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 201 (256)
T TIGR02280 124 --ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTR 201 (256)
T ss_pred --CEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++.+|+.++.....++++.++.|...+..++.++|+++++.+|++||
T Consensus 202 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 249 (256)
T TIGR02280 202 GLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKR 249 (256)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHHcCC
Confidence 999999999988777889999999999999999999999999999987
No 8
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-43 Score=294.66 Aligned_cols=186 Identities=24% Similarity=0.312 Sum_probs=174.1
Q ss_pred CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++... ....+++++..|..+||||||+|||+|+|||++|+++||+||++++ +
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a 128 (260)
T PRK07657 61 AFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES------------A 128 (260)
T ss_pred ceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC------------C
Confidence 38999999987431 1224567888999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+++|++++.+++.+++++++..||.+++
T Consensus 129 ~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~ 208 (260)
T PRK07657 129 SLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVR 208 (260)
T ss_pred EEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus 209 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~~r 253 (260)
T PRK07657 209 QAKEAISNGIQVDLHTGLQIEKQAYEGTIPTKDRLEGLQAFKEKR 253 (260)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCC
Confidence 999999988777889999999999999999999999999999986
No 9
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-43 Score=294.99 Aligned_cols=186 Identities=26% Similarity=0.418 Sum_probs=172.8
Q ss_pred CCCCccCchhhhhh--------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402 1 MTNNPTDLINEDTD--------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~ 66 (198)
.||+|.|++++... ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~------ 133 (266)
T PRK09245 60 AFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET------ 133 (266)
T ss_pred CcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC------
Confidence 48999999987431 0112456778899999999999999999999999999999999999
Q ss_pred CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402 67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146 (198)
Q Consensus 67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~ 146 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++
T Consensus 134 ------a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~ 207 (266)
T PRK09245 134 ------ARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAA 207 (266)
T ss_pred ------CEEcccccccCcCCCcchhhhHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.||.+++.+|+.++.....++++.++.|.+.+..++.++|+++++.+|++||
T Consensus 208 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 259 (266)
T PRK09245 208 NPPHALRLTKRLLREGQHASLDTLLELSAAYQALAHHTADHREAVDAFLEKR 259 (266)
T ss_pred CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHHcCC
Confidence 9999999999999988777888888999999999999999999999999987
No 10
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.1e-43 Score=293.93 Aligned_cols=186 Identities=25% Similarity=0.377 Sum_probs=172.5
Q ss_pred CCCCccCchhhhhhh-------H----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTDT-------S----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++.... . ..+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~--------- 129 (262)
T PRK08140 59 GFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS--------- 129 (262)
T ss_pred CcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC---------
Confidence 389999999874211 1 12345778899999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+|+|++++.+++.++++++++.||
T Consensus 130 ---a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~ 206 (262)
T PRK08140 130 ---ASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPT 206 (262)
T ss_pred ---CEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+++.+|+.++.....++++.++.|...+...+.++|+++++.+|++||
T Consensus 207 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 255 (262)
T PRK08140 207 RGLALIKQAMNASATNTLDAQLDLERDLQREAGRSADYAEGVSAFLEKR 255 (262)
T ss_pred HHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence 9999999999988788899999999999999999999999999999987
No 11
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=1.9e-43 Score=293.26 Aligned_cols=186 Identities=28% Similarity=0.343 Sum_probs=174.3
Q ss_pred CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... ...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 58 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------a~f 125 (255)
T PRK09674 58 FFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN------------ARF 125 (255)
T ss_pred ceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC------------CEE
Confidence 389999999875321 224466788999999999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|+++++++++|+.++++++++|+.++++||+++||||+++|++++.+++.+++++++..||.+++.+
T Consensus 126 ~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~ 205 (255)
T PRK09674 126 GLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAA 205 (255)
T ss_pred eCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus 206 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~i~af~~kr 248 (255)
T PRK09674 206 KQALRQSQEVDLQAGLAQERQLFTLLAATEDRHEGISAFLEKR 248 (255)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence 9999988778899999999999999999999999999999986
No 12
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-43 Score=294.10 Aligned_cols=186 Identities=26% Similarity=0.358 Sum_probs=173.8
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... ...+++++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~------------ 124 (257)
T PRK07658 57 FFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES------------ 124 (257)
T ss_pred ceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC------------
Confidence 389999999874311 123467888999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+++|++++.+++.++++++++.||.++
T Consensus 125 a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~ 204 (257)
T PRK07658 125 AKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATT 204 (257)
T ss_pred CcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.....++++.++.|...+..++.++|.++++.+|++||
T Consensus 205 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~kr 250 (257)
T PRK07658 205 RAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAFLEKR 250 (257)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 9999999988777889999999999999999999999999999986
No 13
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-43 Score=296.60 Aligned_cols=186 Identities=24% Similarity=0.288 Sum_probs=172.6
Q ss_pred CCCCccCchhhhhh---------------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402 1 MTNNPTDLINEDTD---------------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI 62 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~ 62 (198)
.||+|.|++++... . ...+++++.+|..+||||||+|||+|+|||++|+++||+||++++
T Consensus 62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-- 139 (272)
T PRK06142 62 HFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-- 139 (272)
T ss_pred ceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC--
Confidence 38999999986431 0 123456788899999999999999999999999999999999999
Q ss_pred ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHH
Q psy5402 63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRI 141 (198)
Q Consensus 63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a 141 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|+ +++.+.+.+++
T Consensus 140 ----------a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a 209 (272)
T PRK06142 140 ----------AKFSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATA 209 (272)
T ss_pred ----------CeecchhhhhCCCCCchHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999996 88999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++++.||.+++.+|+.++.....++++.++.|...+...+.++|++|++.+|++||
T Consensus 210 ~~ia~~~~~a~~~~K~~l~~~~~~~l~~~~~~~~~~~~~~~~~~d~~egv~af~~kr 266 (272)
T PRK06142 210 REIAAKSPLAVRGTKEVLDYMRDHRVADGLRYVATWNAAMLPSKDLTEAIAAHMEKR 266 (272)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhcCC
Confidence 999999999999999999988777889999999999999999999999999999987
No 14
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-43 Score=293.28 Aligned_cols=186 Identities=26% Similarity=0.331 Sum_probs=173.7
Q ss_pred CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... ...+++++..+..+||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~------------a~f 131 (261)
T PRK08138 64 VFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES------------ASF 131 (261)
T ss_pred CeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC------------CEe
Confidence 389999999875321 234567888999999999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|++++.+++.++++++++.||.+++.+
T Consensus 132 ~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~ 211 (261)
T PRK08138 132 GQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQI 211 (261)
T ss_pred eCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.|.+.+..++.++++++++++|++||
T Consensus 212 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~af~~kr 254 (261)
T PRK08138 212 KEVVLAGADAPLDAALALERKAFQLLFDSEDQKEGMDAFLEKR 254 (261)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 9999988777888899999999999999999999999999987
No 15
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=2.8e-43 Score=292.84 Aligned_cols=186 Identities=27% Similarity=0.353 Sum_probs=174.3
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~------------a 128 (260)
T PRK05809 61 AFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK------------A 128 (260)
T ss_pred ceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC------------C
Confidence 489999999875321 123456788999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|++++|++++|..++++++++|++++|+||+++||||+++|++++.+.+.+++++++..||.+++
T Consensus 129 ~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~ 208 (260)
T PRK05809 129 KFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVK 208 (260)
T ss_pred EEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+|+.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus 209 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~egi~af~~~r 253 (260)
T PRK05809 209 LCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKR 253 (260)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 999999988778899999999999999999999999999999987
No 16
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.5e-43 Score=292.41 Aligned_cols=186 Identities=23% Similarity=0.273 Sum_probs=170.3
Q ss_pred CCCCccCchhhhhhh----H---H-HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT----S---I-TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~----~---~-~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... . . ..+.+...+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 55 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~------------ 122 (255)
T PRK06563 55 HFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN------------ 122 (255)
T ss_pred CCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC------------
Confidence 489999999875421 1 1 1222334588999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|++|+++++++++|..+|++++++|+.++++||+++||||+++|++++.+++.++++++++.||.++
T Consensus 123 a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 202 (255)
T PRK06563 123 TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGV 202 (255)
T ss_pred CEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.....++.+.++.|...+..++.++|+++++.+|++||
T Consensus 203 ~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 248 (255)
T PRK06563 203 QATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQAFLERR 248 (255)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence 9999999987777889999999999999999999999999999987
No 17
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-43 Score=294.74 Aligned_cols=186 Identities=26% Similarity=0.318 Sum_probs=172.7
Q ss_pred CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 73 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~--------- 143 (277)
T PRK08258 73 NFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS--------- 143 (277)
T ss_pred CcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC---------
Confidence 48999999987321 1123456788999999999999999999999999999999999999
Q ss_pred cceEEEecccccccccC-CchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402 70 VLQATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p-~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~ 148 (198)
++|++||+++|++| ++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..|
T Consensus 144 ---a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~ 220 (277)
T PRK08258 144 ---AKTAFLFTRVGLAGADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGP 220 (277)
T ss_pred ---CEEeccccccCcCCCCchHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999995 77889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 149 PQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 149 ~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|.+++.+|+.++.....++++.++.|...+..++.++|+++++++|++||
T Consensus 221 ~~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr 270 (277)
T PRK08258 221 TFAHGMTKTMLHQEWDMGLEEAIEAEAQAQAICMQTEDFRRAYEAFVAKR 270 (277)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence 99999999999988788899999999999999999999999999999987
No 18
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=2.4e-43 Score=295.50 Aligned_cols=186 Identities=23% Similarity=0.272 Sum_probs=171.7
Q ss_pred CCCCccCchhhhhh--------------h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCc
Q psy5402 1 MTNNPTDLINEDTD--------------T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAI 62 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--------------~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~ 62 (198)
.||+|.|++++... . ...+++++..|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 64 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-- 141 (275)
T PLN02664 64 HFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-- 141 (275)
T ss_pred ceeeCcChHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC--
Confidence 48999999987431 0 113356778899999999999999999999999999999999999
Q ss_pred ccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHH
Q psy5402 63 LLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRI 141 (198)
Q Consensus 63 ~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a 141 (198)
++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||++||+ +++.+.+.+++
T Consensus 142 ----------a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a 211 (275)
T PLN02664 142 ----------AFFSVKEVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIA 211 (275)
T ss_pred ----------CEeccHHHhhCCCCCccHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995 88999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++++..||.+++.+|+.++.....++.+.++.|...+...+.++|++|++++|++||
T Consensus 212 ~~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr 268 (275)
T PLN02664 212 EGIAAKSPLAVTGTKAVLLRSRELSVEQGLDYVATWNSAMLVSDDLNEAVSAQIQKR 268 (275)
T ss_pred HHHHhCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccChhHHHHHHHHhccC
Confidence 999999999999999999988777888999999999999999999999999999987
No 19
>KOG1680|consensus
Probab=100.00 E-value=4.3e-44 Score=292.14 Aligned_cols=185 Identities=26% Similarity=0.310 Sum_probs=175.3
Q ss_pred CCCccCchhhhhhhH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402 2 TNNPTDLINEDTDTS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76 (198)
Q Consensus 2 ~s~G~Dl~~~~~~~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~ 76 (198)
||+|.||+++..... ..+.+.+..+...+||+||+|||+|+|||++|+++||+|||+++ |+|+
T Consensus 94 FcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~------------Akfg 161 (290)
T KOG1680|consen 94 FCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG------------AKFG 161 (290)
T ss_pred cccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC------------Ceec
Confidence 899999999977432 23455666677899999999999999999999999999999999 9999
Q ss_pred cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK 156 (198)
Q Consensus 77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K 156 (198)
+|+.++|++|.+|++.+|+|.||.++|+++++||++++|+||+++||||+|||.+++..+|.+++++|++.||.+++..|
T Consensus 162 ~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K 241 (290)
T KOG1680|consen 162 FFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADK 241 (290)
T ss_pred ccccccCCccCCCchhhHHHHhChHHHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.++...+.++.+.++.|...+...|..+|.+||+.+|.+||
T Consensus 242 ~svn~~~e~~l~e~l~~e~~~~~s~~~~~d~~Eg~~~f~~kr 283 (290)
T KOG1680|consen 242 ESVNAAYETTLFEGLELERDLFGSTFATEDRLEGMTAFAEKR 283 (290)
T ss_pred HHHHHHhhccHHHHHHhhhhhhhhhhhhHHHHHHHHHhcccC
Confidence 999999899999999999999999999999999999999987
No 20
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-43 Score=291.34 Aligned_cols=186 Identities=26% Similarity=0.343 Sum_probs=173.7
Q ss_pred CCCCccCchhhhhh----h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTD----T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++... . ...+++++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 58 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~--------- 128 (255)
T PRK07260 58 VFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK--------- 128 (255)
T ss_pred CcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC---------
Confidence 48999999987531 1 123466778999999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||+++|++++.+.+.++++++++.||
T Consensus 129 ---a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~ 205 (255)
T PRK07260 129 ---TKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSS 205 (255)
T ss_pred ---CEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+++.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus 206 ~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 254 (255)
T PRK07260 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERR 254 (255)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 9999999999998788899999999999999999999999999999987
No 21
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.6e-43 Score=292.97 Aligned_cols=186 Identities=23% Similarity=0.305 Sum_probs=173.3
Q ss_pred CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+++++..|..+||||||+|||+|+|||++|+++||+||++++
T Consensus 68 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~----------- 136 (269)
T PRK06127 68 AFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED----------- 136 (269)
T ss_pred ceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-----------
Confidence 38999999987431 1123456778899999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||+++|++|++|+++++++++|..++++++++|++++++||+++||||+|||++++.+++.+++++++..||.+
T Consensus 137 -a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a 215 (269)
T PRK06127 137 -SRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLT 215 (269)
T ss_pred -CEeeCchhhhCCCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.+|+.++.....+++..++.|...+..++.++|.++++.+|++||
T Consensus 216 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr 262 (269)
T PRK06127 216 LRAAKRAIAELLKDEPERDMAACQALVAACFDSEDYREGRAAFMEKR 262 (269)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 99999999988777888999999999999999999999999999987
No 22
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=4.3e-43 Score=294.06 Aligned_cols=186 Identities=20% Similarity=0.208 Sum_probs=168.4
Q ss_pred CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++.... ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~--------- 134 (275)
T PRK09120 64 AWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE--------- 134 (275)
T ss_pred ceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC---------
Confidence 389999999863210 113456788899999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|+++++++++|..++++++++|+.++|+||+++||||+|||++++++++.+++++|+..||
T Consensus 135 ---a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p 211 (275)
T PRK09120 135 ---AQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNP 211 (275)
T ss_pred ---cEecCCccccCCCCCcchHHHHHHHcCHHHHHHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHH--HHHHHhCCH-HHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECK--RLEERWESE-EFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~--~~~~~~~~~-~~~e~~~af~~kr 198 (198)
.+++.+|+.++.....++.+.++.|.. .....+.++ |+++++++|++||
T Consensus 212 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~d~~eg~~afl~kr 263 (275)
T PRK09120 212 VVLRAAKDGFKRVRELTWDQAEDYLYAKLEQANSLDPEGGREEGLKQFLDDK 263 (275)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcc
Confidence 999999999998877788888777654 345568898 8999999999987
No 23
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.8e-43 Score=292.36 Aligned_cols=186 Identities=24% Similarity=0.394 Sum_probs=173.7
Q ss_pred CCCCccCchhhhhh-------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCC
Q psy5402 1 MTNNPTDLINEDTD-------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHP 67 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~ 67 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~------- 133 (266)
T PRK05981 61 GFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS------- 133 (266)
T ss_pred CcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-------
Confidence 48999999986421 1123567888999999999999999999999999999999999999
Q ss_pred cccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402 68 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147 (198)
Q Consensus 68 ~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~ 147 (198)
++|++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+++|++++.+++.+++++++..
T Consensus 134 -----a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~ 208 (266)
T PRK05981 134 -----AYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANG 208 (266)
T ss_pred -----CEEechHhhcCCCCCccHHHHHHHHhHHHHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 148 ~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
||.+++.+|+.++.....++.+.++.|...+...+.++|+++++.+|++||
T Consensus 209 ~~~a~~~~K~~~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr 259 (266)
T PRK05981 209 PTVALGLIRKLYWDSPENDFEEQLNLEREAQRIAGKTEDFKEGVGAFLQKR 259 (266)
T ss_pred CHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence 999999999999887777888999999999999999999999999999987
No 24
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.8e-43 Score=288.90 Aligned_cols=184 Identities=29% Similarity=0.438 Sum_probs=170.3
Q ss_pred CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++|||||++++ ++
T Consensus 62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~------------a~ 129 (251)
T PRK06023 62 CFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR------------SL 129 (251)
T ss_pred CeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC------------CE
Confidence 38999999987531 1235567888999999999999999999999999999999999999 99
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|++|+++++++++|..++++++++|+.++++||+++||||+++|.+++.+++.+++++|+..||.+++.
T Consensus 130 f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~ 209 (251)
T PRK06023 130 FRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQI 209 (251)
T ss_pred ecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402 155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k 197 (198)
+|+.++... ..++..++.|.+.+...|.++|+++++++|++|
T Consensus 210 ~K~~l~~~~-~~l~~~~~~e~~~~~~~~~~~~~~e~~~af~e~ 251 (251)
T PRK06023 210 ARDLMRGPR-EDILARIDEEAKHFAARLKSAEARAAFEAFMRR 251 (251)
T ss_pred HHHHHHhch-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 999998763 467888888888899999999999999999986
No 25
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.3e-43 Score=291.39 Aligned_cols=185 Identities=23% Similarity=0.279 Sum_probs=170.6
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 67 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------ 134 (266)
T PRK08139 67 AFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT------------ 134 (266)
T ss_pred cceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC------------
Confidence 389999999874321 123456788899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|+++ ++++++++|..+|++++++|++++|+||+++||||+|+|++++.+.+.+++++++..||.++
T Consensus 135 a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 213 (266)
T PRK08139 135 ARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAV 213 (266)
T ss_pred CEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999765 46799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.....++++.++.|.+.+...+.++|+++++++|++||
T Consensus 214 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 259 (266)
T PRK08139 214 RIGKEAFYRQAEMPLADAYAYAGDVMAENMMAEDAEEGIDAFLEKR 259 (266)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence 9999999988788889999999999999999999999999999986
No 26
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-43 Score=289.63 Aligned_cols=186 Identities=22% Similarity=0.334 Sum_probs=174.3
Q ss_pred CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... ....+++++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 59 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~---------- 128 (260)
T PRK07511 59 FFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD---------- 128 (260)
T ss_pred CcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC----------
Confidence 48999999987431 1234567888999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|++|+++++++++|.+++++++++|++++++||+++||||+++|++++.+++.++++++++.||.
T Consensus 129 --a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~ 206 (260)
T PRK07511 129 --AKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPN 206 (260)
T ss_pred --CEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++..+|+.++.....++.+.++.|...+..++.+++.++++++|++||
T Consensus 207 ~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~i~~f~~~r 254 (260)
T PRK07511 207 ALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAAFLEKR 254 (260)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhccC
Confidence 999999999988777889999999999999999999999999999986
No 27
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=9e-43 Score=290.68 Aligned_cols=186 Identities=23% Similarity=0.236 Sum_probs=170.8
Q ss_pred CCCCccCchhhhhh----hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402 1 MTNNPTDLINEDTD----TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~ 76 (198)
.||+|.|++++... ......+++..|..+||||||+|||+|+|||++|+++||+||++++ ++|+
T Consensus 66 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~------------a~f~ 133 (265)
T PLN02888 66 AFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG------------AKFI 133 (265)
T ss_pred cccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC------------CEec
Confidence 48999999986431 1123356778899999999999999999999999999999999999 9999
Q ss_pred cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK 156 (198)
Q Consensus 77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K 156 (198)
+||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||++||++++.+++.+++++++..+|.+++.+|
T Consensus 134 ~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 213 (265)
T PLN02888 134 DTHAKFGIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYK 213 (265)
T ss_pred CccccccCCCCccHhhHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhcHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHccC
Q psy5402 157 QLVRVPMLSMLHEANKRECKRLEERW--ESEEFMNAITAFFNRK 198 (198)
Q Consensus 157 ~~l~~~~~~~~~~~~~~e~~~~~~~~--~~~~~~e~~~af~~kr 198 (198)
+.++.....++++.++.|...+..+| .++|+++++++|++||
T Consensus 214 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~e~~~af~ekr 257 (265)
T PLN02888 214 SVINDGLKLDLGHALQLEKERAHDYYNGMTKEQFQKMQEFIAGR 257 (265)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcC
Confidence 99998877788888888888888876 5999999999999987
No 28
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-42 Score=289.12 Aligned_cols=186 Identities=29% Similarity=0.530 Sum_probs=175.2
Q ss_pred CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++... ....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~------------a~ 128 (259)
T PRK06688 61 AFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES------------AK 128 (259)
T ss_pred CccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC------------CE
Confidence 38999999987532 2335677889999999999999999999999999999999999999 99
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|++|+++++++++|..+|++++++|++++++||+++||||+++|++++.+++.++++++++.||.+++.
T Consensus 129 f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~ 208 (259)
T PRK06688 129 FSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRY 208 (259)
T ss_pred ecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|+.++.....++++.++.|.+.+..++.+++.++++++|++||
T Consensus 209 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~af~~~~ 252 (259)
T PRK06688 209 TKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEKR 252 (259)
T ss_pred HHHHHHhhhhCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 99999988788899999999999999999999999999999986
No 29
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=8.5e-43 Score=287.33 Aligned_cols=185 Identities=30% Similarity=0.428 Sum_probs=175.5
Q ss_pred CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++... ....+++++.++..+||||||+|||+|+|||++++++||+||++++ +
T Consensus 54 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~------------a 121 (245)
T PF00378_consen 54 AFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED------------A 121 (245)
T ss_dssp ESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT------------T
T ss_pred ccccccchhhhhccccccccccchhhccccccchhhhhheeecccccccccccccccccceEEeecc------------c
Confidence 38999999988655 2346778899999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|.+++++++++|++++|+||+++||||+++|++++.+.+.+++++++..|+.+++
T Consensus 122 ~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~ 201 (245)
T PF00378_consen 122 KFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALR 201 (245)
T ss_dssp EEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHH
T ss_pred ceeeeecccCcccccccccccceeeecccccccccccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402 154 FAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 154 ~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k 197 (198)
.+|+.++......+++..+.+...+..++.++|++|++++|+||
T Consensus 202 ~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~f~eK 245 (245)
T PF00378_consen 202 ATKKALNRALEQSLEEALEFEQDLFAECFKSEDFQEGIAAFLEK 245 (245)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhCc
Confidence 99999999888888999999999999999999999999999998
No 30
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-42 Score=289.37 Aligned_cols=185 Identities=25% Similarity=0.390 Sum_probs=168.7
Q ss_pred CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... . ...+.+++..|..+||||||+|||+|+|||++|+++||+||++++
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~---------- 130 (262)
T PRK07468 61 SFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG---------- 130 (262)
T ss_pred cccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC----------
Confidence 38999999986421 0 123456788999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|++|+++++ +++|..++++++++|++++++||+++||||+++|++++.+.+.++++++++.||.
T Consensus 131 --a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~ 207 (262)
T PRK07468 131 --ARFGLTETRLGLIPATISPYVV-ARMGEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPG 207 (262)
T ss_pred --CEEeCchhccCCCcccchhhHH-hhccHHHHHHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999888755 5599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++.+|+.++......++..++.|...+...+.++|+++++++|++||
T Consensus 208 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~s~d~~e~~~af~~kr 255 (262)
T PRK07468 208 AVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKR 255 (262)
T ss_pred HHHHHHHHHHhhhccChHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 999999999887666678888999999999999999999999999987
No 31
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-42 Score=289.46 Aligned_cols=185 Identities=23% Similarity=0.354 Sum_probs=172.7
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... ...+++++.++..+||||||+|||+|+|||++|+++||+||++++
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~------------ 128 (260)
T PRK07659 61 GFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS------------ 128 (260)
T ss_pred CcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC------------
Confidence 389999999874321 224567788899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|++|++++|++++|+.+|++++++|+.++|+||+++||||+++ ++++.+++.++++++++.||.++
T Consensus 129 a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~ 207 (260)
T PRK07659 129 AKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAM 207 (260)
T ss_pred CEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 78899999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.....++++.++.|.+.+...+.++|+++++.+|++||
T Consensus 208 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr 253 (260)
T PRK07659 208 IETKQIYCELNRSQLEQVLQLEKRAQYAMRQTADHKEGIRAFLEKR 253 (260)
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCHhHHHHHHHHhcCC
Confidence 9999999988788899999999999999999999999999999987
No 32
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-42 Score=289.09 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=167.7
Q ss_pred CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~------------a~f 127 (259)
T PRK06494 61 AFSAGNDLKEQAAGGKRGWPESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN------------ATF 127 (259)
T ss_pred ceeccccHHhHhhcCcchhhhHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC------------CEE
Confidence 489999999875321 1233333 3456899999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|+++++++++|+.+|++++++|+.++|+||+++||||+++|++++.+++.+++++++..||.+++.+
T Consensus 128 ~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~ 207 (259)
T PRK06494 128 ALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRAS 207 (259)
T ss_pred eCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHH--HHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRE--CKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e--~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.| ...+..++.++|+++++.+|++||
T Consensus 208 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~d~~eg~~af~~kr 252 (259)
T PRK06494 208 KQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAFAEKR 252 (259)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHccC
Confidence 9999987777888888888 456788999999999999999986
No 33
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-42 Score=288.35 Aligned_cols=185 Identities=26% Similarity=0.320 Sum_probs=169.0
Q ss_pred CCCCccCchhhhhh-------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD-------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... . ...+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~---------- 129 (262)
T PRK05995 60 AFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH---------- 129 (262)
T ss_pred ccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC----------
Confidence 38999999986421 0 124567888999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|++|++ ++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.
T Consensus 130 --a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~ 206 (262)
T PRK05995 130 --AVFCLSEVRLGLIPATISP-YVIRAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQ 206 (262)
T ss_pred --CEEeCcccccccCccchHH-HHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999999988766 4889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++.+|+.++.....++.+. ++.|...+...+.++|+++++.+|++||
T Consensus 207 a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~~kr 255 (262)
T PRK05995 207 AVRAGKRLVRDVAGRPIDAALIADTASRIALIRATEEAREGVAAFLEKR 255 (262)
T ss_pred HHHHHHHHHHhhhcCChhhHHHHHHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 99999999998767777777 7888888999999999999999999987
No 34
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.4e-42 Score=288.94 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=169.2
Q ss_pred CCCCccCchhhhhhh---H---HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTDT---S---ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~---~---~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++.... . ......+.++.++||||||+|||+|+|||++|+++||+||++++ ++
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~ 126 (261)
T PRK03580 59 FFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN------------AS 126 (261)
T ss_pred ceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC------------CE
Confidence 489999999875321 1 11234577899999999999999999999999999999999999 99
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++++..||.+++.
T Consensus 127 f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 206 (261)
T PRK03580 127 FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAA 206 (261)
T ss_pred EeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhcHHHHHHHHH----HHHHHHhCCHHHHHHHHHHHccC
Q psy5402 155 AKQLVRVPMLSMLHEANKREC----KRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 155 ~K~~l~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|+.++.....++++.++.|. ..+..++.++|+++++++|++||
T Consensus 207 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d~~e~~~af~ekr 254 (261)
T PRK03580 207 LKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAFAEKR 254 (261)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHhcCccHHHHHHHHhcCC
Confidence 999999887777888887775 36778999999999999999987
No 35
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=1.2e-42 Score=289.10 Aligned_cols=185 Identities=21% Similarity=0.270 Sum_probs=165.9
Q ss_pred CCCCccCchhhhhh----h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTD----T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++... . ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~------------ 127 (259)
T TIGR01929 60 AFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN------------ 127 (259)
T ss_pred ceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC------------
Confidence 48999999876321 0 112456788899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+|+|++++.+++.+++++++..||.++
T Consensus 128 a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 207 (259)
T TIGR01929 128 ARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAI 207 (259)
T ss_pred CEecCcccccccCCCccHHHHHHHHhHHHHHHHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++..... .....+.|...+...+.++|+++++++|++||
T Consensus 208 ~~~K~~l~~~~~~-~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr 252 (259)
T TIGR01929 208 RMLKAALNADCDG-QAGLQELAGNATMLFYMTEEGQEGRNAFLEKR 252 (259)
T ss_pred HHHHHHHHhhhcc-chHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 9999999876443 34455566778889999999999999999987
No 36
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-42 Score=289.21 Aligned_cols=185 Identities=24% Similarity=0.216 Sum_probs=169.4
Q ss_pred CCCCccCchhhhhhh-----H------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTDT-----S------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|.|++++.... . ..+.. +.++..+||||||+|||+|+|||++|+++||+||++++
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~--------- 130 (263)
T PRK07799 61 AFCAGMDLKAATKKPPGDSFKDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES--------- 130 (263)
T ss_pred ccccccCHHHHhhccccchhhhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC---------
Confidence 489999999875321 0 01222 33567899999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||
T Consensus 131 ---a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~ 207 (263)
T PRK07799 131 ---AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGP 207 (263)
T ss_pred ---CEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+++.+|+.++.....++.+.++.|.+.+..++.++++++++++|++||
T Consensus 208 ~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~~r 256 (263)
T PRK07799 208 LAVQAILRTIRETEGMHENEAFKIDTKIGIPVFLSEDAKEGPRAFAEKR 256 (263)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHccC
Confidence 9999999999988777889999999999999999999999999999986
No 37
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-42 Score=286.93 Aligned_cols=184 Identities=22% Similarity=0.210 Sum_probs=167.8
Q ss_pred CCCCccCchhhhhhh-HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... .. .+..++ ...+||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f 124 (254)
T PRK08252 59 TFCAGMDLKAFARGERPSIPGRGFGGLT--ERPPRKPLIAAVEGYALAGGFELALACDLIVAARD------------AKF 124 (254)
T ss_pred ceEcCcCHHHHhcccchhhhHHHHHHHH--HhcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC------------CEE
Confidence 489999999875421 11 122222 14799999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|++++|++++|..+|++++++|++++++||+++||||+|+|++++.+++.+++++++..||.+++.+
T Consensus 125 ~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~ 204 (254)
T PRK08252 125 GLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAAS 204 (254)
T ss_pred eCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.|...+..++.++|+++++.+|++||
T Consensus 205 K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr 247 (254)
T PRK08252 205 KRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAFAEKR 247 (254)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhcCchHHHHHHHHhcCC
Confidence 9999987777888999999999999999999999999999986
No 38
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=1.8e-42 Score=290.59 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=170.6
Q ss_pred CCCCccCchhhhhh--h---HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD--T---SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--~---~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... . .. .+++++.+|.++||||||+|||+|+|||++|+++|||||++++
T Consensus 69 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~----------- 137 (278)
T PLN03214 69 VFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE----------- 137 (278)
T ss_pred cccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-----------
Confidence 48999999986421 1 11 2245678899999999999999999999999999999999999
Q ss_pred eEEEecccccccc-cCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 72 QATFHTPFTLRGM-TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 72 ~a~~~~pe~~~Gi-~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|+ +|++++++++++++|+.++++++++|+.|+++||+++||||+|+|.+++.+.+.+++++++..||.
T Consensus 138 -a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~ 216 (278)
T PLN03214 138 -GTMGLNEVALGIPVPKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSA 216 (278)
T ss_pred -CEecCcHHHhCCCCCChhHHHHHHHhcCHHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999 588899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k 197 (198)
+++.+|+.++.....++++.++.|...+...+.++|+++++.+|++|
T Consensus 217 a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~aflek 263 (278)
T PLN03214 217 ARAATKALLREEFSAAWEAYYEEEAKGGWKMLSEPSIIKALGGVMER 263 (278)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999998878888999999999999999999999999999986
No 39
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-42 Score=289.40 Aligned_cols=186 Identities=28% Similarity=0.435 Sum_probs=171.7
Q ss_pred CCCCccCchhhhhhhH-----------------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcc
Q psy5402 1 MTNNPTDLINEDTDTS-----------------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~-----------------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~ 63 (198)
.||+|.|++++..... ..+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 62 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~--- 138 (272)
T PRK06210 62 GFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG--- 138 (272)
T ss_pred CcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC---
Confidence 4899999998643110 12345678899999999999999999999999999999999999
Q ss_pred cCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402 64 LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143 (198)
Q Consensus 64 ~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~ 143 (198)
++|++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++
T Consensus 139 ---------a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ 209 (272)
T PRK06210 139 ---------AKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAED 209 (272)
T ss_pred ---------CEEechHHhcCCCCCCchhhhhHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 144 WAKL-PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 144 la~~-~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.. +|.++..+|+.++.....++++.++.|...+...+.++++++++++|++||
T Consensus 210 i~~~~~p~a~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~af~~kr 265 (272)
T PRK06210 210 LARNVSPASMAVIKRQLYEDAFQTLAEATARANREMHESLQRPDFIEGVASFLEKR 265 (272)
T ss_pred HHhcCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 9985 999999999999988778889999999999999999999999999999987
No 40
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=2.2e-42 Score=287.71 Aligned_cols=186 Identities=22% Similarity=0.324 Sum_probs=169.4
Q ss_pred CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++... ....+++++..+..+||||||+|||+|+|||++|+++||+||++++ ++
T Consensus 61 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~ 128 (261)
T PRK11423 61 VWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST------------ST 128 (261)
T ss_pred eeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC------------CE
Confidence 38999999987421 1234567889999999999999999999999999999999999999 99
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+|||++++++.+.++++++++.||.+++.
T Consensus 129 f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~ 208 (261)
T PRK11423 129 FAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAV 208 (261)
T ss_pred ecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhh-hcH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 155 AKQLVRVPML-SML-HEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 155 ~K~~l~~~~~-~~~-~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|+.++.... ..+ ....+.|...+..++.++|.++++.+|++||
T Consensus 209 ~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~eg~~af~~kr 254 (261)
T PRK11423 209 IKEQLRVLGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKR 254 (261)
T ss_pred HHHHHHhhcccCCcchHHHHHHHHHHHHHhCChhHHHHHHHHhccC
Confidence 9999986533 333 4677778888899999999999999999987
No 41
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=3.1e-42 Score=286.08 Aligned_cols=185 Identities=24% Similarity=0.358 Sum_probs=163.2
Q ss_pred CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++ ++
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~ 126 (256)
T TIGR03210 59 AFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK------------AQ 126 (256)
T ss_pred ceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC------------CE
Confidence 48999999987421 1123467888999999999999999999999999999999999999 99
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|++++++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++.
T Consensus 127 f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~ 206 (256)
T TIGR03210 127 FGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAI 206 (256)
T ss_pred EecccccccccCCccHHHHHHHHhCHHHHHHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 155 AKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 155 ~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|+.++........ ....|...+...+.++|+++++.+|++||
T Consensus 207 ~K~~l~~~~~~~~~-~~~~~~~~~~~~~~~~d~~e~~~af~~kr 249 (256)
T TIGR03210 207 AKRSFNMDTAHQRG-IAGMGMYALKLYYDTAESREGVKAFQEKR 249 (256)
T ss_pred HHHHHHHhhcccch-HHHHHHHHHHHHccChhHHHHHHHHhccC
Confidence 99999876432111 11234567788899999999999999987
No 42
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.1e-42 Score=287.42 Aligned_cols=185 Identities=20% Similarity=0.277 Sum_probs=166.6
Q ss_pred CCCCccCchhhhhh-------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD-------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... . ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~---------- 131 (265)
T PRK05674 62 HFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD---------- 131 (265)
T ss_pred CcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC----------
Confidence 48999999986421 0 123467888899999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|+++++ .+++++|.+++++++++|+.++|+||+++||||+|+|++++.+++.+++++++..||.
T Consensus 132 --a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~ 208 (265)
T PRK05674 132 --AQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQ 208 (265)
T ss_pred --CEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999999987766 5889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKR-ECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++.+|+.++.....++++.++. +...+...+.++|.++++++|++||
T Consensus 209 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~e~~~af~~kr 257 (265)
T PRK05674 209 ALRASKDLLREVGDGELSPALRRYCENAIARIRVSAEGQEGLRAFLEKR 257 (265)
T ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHhcCHHHHHHHHHHHccC
Confidence 99999999998877777776654 4467788899999999999999986
No 43
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.6e-42 Score=284.69 Aligned_cols=183 Identities=19% Similarity=0.170 Sum_probs=167.7
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... ...+.+++..|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 57 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~------------ 124 (249)
T PRK07938 57 GFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD------------ 124 (249)
T ss_pred ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC------------
Confidence 489999999864321 123456788899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++ |+++++++++|+.++++++++|+.++|+||+++||||++||++++.+++.+++++++..||.++
T Consensus 125 a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 201 (249)
T PRK07938 125 ATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVI 201 (249)
T ss_pred CEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 9999999999996 4556899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.....++++.++.|...+...+.++|++|++++|++||
T Consensus 202 ~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~ekr 247 (249)
T PRK07938 202 RAAKEALNGIDPQDVERSYRWEQGFTFELNLAGVSDEHRDAFVEKR 247 (249)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHhcC
Confidence 9999999987777788888999989999999999999999999997
No 44
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-42 Score=285.25 Aligned_cols=185 Identities=21% Similarity=0.179 Sum_probs=165.9
Q ss_pred CCCCccCchhhhhhhHHH-----HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDTSIT-----LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~~~-----~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++....... ...+...+..+||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~------------a~f 126 (254)
T PRK08259 59 TFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED------------AVF 126 (254)
T ss_pred CccCCcChHHHhcccchhhhhhhcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC------------CEe
Confidence 489999999875321111 112223345799999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|.+|+++++++++|..++++++++|+.|+|+||+++||||+|||++++.+++.+++++|++.||.+++.+
T Consensus 127 ~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~ 206 (254)
T PRK08259 127 GVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRAD 206 (254)
T ss_pred cCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
|+.++.....++++.++.|...+...+. +|++|++.+|++||
T Consensus 207 K~~~~~~~~~~~~~~~~~e~~~~~~~~~-~d~~egi~af~~~~ 248 (254)
T PRK08259 207 RLSALEQWGLPEEAALANEFAHGLAVLA-AEALEGAARFAAGA 248 (254)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHhhh
Confidence 9999987777888888888887777777 99999999999986
No 45
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-42 Score=285.16 Aligned_cols=183 Identities=22% Similarity=0.235 Sum_probs=169.6
Q ss_pred CCCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++... ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~------------a 126 (249)
T PRK05870 59 AFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK------------A 126 (249)
T ss_pred CeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC------------C
Confidence 48999999987532 1223455677899999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|+++++++++|+.++++++++|++++|+||+++||||+++ +++.+++.+++++++..||.+++
T Consensus 127 ~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~ 204 (249)
T PRK05870 127 LFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVL 204 (249)
T ss_pred EEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 67999999999999999999999
Q ss_pred HHHHHhhchhh-hcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402 154 FAKQLVRVPML-SMLHEANKRECKRLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 154 ~~K~~l~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~k 197 (198)
.+|+.++.... .++++.++.|...+...+.++|+++++.+|+++
T Consensus 205 ~~K~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~~ 249 (249)
T PRK05870 205 ATKASMRATASLAQHAAAVEFELGPQAASVQSPEFAARLAAAQRR 249 (249)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcC
Confidence 99999998876 788899999999999999999999999999985
No 46
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=6.4e-42 Score=286.65 Aligned_cols=185 Identities=22% Similarity=0.240 Sum_probs=166.0
Q ss_pred CCCCccCchhhhhhh------HH--HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT------SI--TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~------~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... .. ...+++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 70 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------ 137 (273)
T PRK07396 70 AFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN------------ 137 (273)
T ss_pred ceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC------------
Confidence 489999999864210 11 2235677899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|+++++.++++++|..++++++++|+.++|+||+++||||+|||++++.+++.+++++++..||.++
T Consensus 138 a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~ 217 (273)
T PRK07396 138 AIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMAL 217 (273)
T ss_pred cEEecccccccccCCchHHHHHHHHhhHHHHHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++.... ..+...+.|...+...+.++|+++++.+|++||
T Consensus 218 ~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~~kr 262 (273)
T PRK07396 218 RCLKAALNADCD-GQAGLQELAGNATMLFYMTEEAQEGRNAFNEKR 262 (273)
T ss_pred HHHHHHHHhhhc-cHHHHHHHHHHHHHHHhcChhHHHHHHHHhCCC
Confidence 999999987643 345555567778888999999999999999986
No 47
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.3e-42 Score=285.27 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=160.5
Q ss_pred CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+.+++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 68 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~----------- 136 (268)
T PRK07327 68 AFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD----------- 136 (268)
T ss_pred CcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-----------
Confidence 48999999876421 1123456788899999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+
T Consensus 137 -a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a 215 (268)
T PRK07327 137 -ARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTA 215 (268)
T ss_pred -CEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhh---cHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 152 MIFAKQLVRVPMLS---MLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 152 ~~~~K~~l~~~~~~---~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.+|+.++..... .++..+..+ ...+.++|+++++.+|++||
T Consensus 216 ~~~~K~~l~~~~~~~~~~~~~~~~~~----~~~~~~~d~~eg~~af~ekr 261 (268)
T PRK07327 216 IRWTKYALNNWLRMAGPTFDTSLALE----FMGFSGPDVREGLASLREKR 261 (268)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHH----HHHccChhHHHHHHHHHhcC
Confidence 99999999865221 233333332 35788999999999999987
No 48
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.9e-42 Score=284.89 Aligned_cols=182 Identities=21% Similarity=0.287 Sum_probs=164.8
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.|++++.... ...+++++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 65 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~------------ 132 (262)
T PRK06144 65 AFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS------------ 132 (262)
T ss_pred ceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC------------
Confidence 389999999875321 123566788899999999999999999999999999999999999
Q ss_pred EEEeccccc-ccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402 73 ATFHTPFTL-RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 73 a~~~~pe~~-~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||++ +|++|++|+++++++++|..+|++++++|++++|+||+++||||+|+|++++.+++.++++++++.||.+
T Consensus 133 a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a 212 (262)
T PRK06144 133 ARFGFPIARTLGNCLSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLT 212 (262)
T ss_pred CEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999996 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.+|+.++......+ +.+.+.+...+.++++++++.+|++||
T Consensus 213 ~~~~K~~l~~~~~~~l----~~~~~~~~~~~~~~~~~e~~~af~~kr 255 (262)
T PRK06144 213 LRATKEALRRLRREGL----PDGDDLIRMCYMSEDFREGVEAFLEKR 255 (262)
T ss_pred HHHHHHHHHHhhhcCH----HHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 9999999987654433 445567788999999999999999987
No 49
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.5e-42 Score=286.32 Aligned_cols=186 Identities=26% Similarity=0.275 Sum_probs=165.1
Q ss_pred CCCCccCchhhhhh--------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402 1 MTNNPTDLINEDTD--------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~ 66 (198)
.||+|.|++++... ....+++++..+..+||||||+|||+|+|||++|+++||+||++++
T Consensus 66 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~------ 139 (276)
T PRK05864 66 GFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS------ 139 (276)
T ss_pred CeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC------
Confidence 48999999976321 1123456788899999999999999999999999999999999999
Q ss_pred CcccceEEEecccccccccC-CchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402 67 PVFVLQATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145 (198)
Q Consensus 67 ~~~~~~a~~~~pe~~~Gi~p-~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la 145 (198)
++|++||+++|++| ++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++|+
T Consensus 140 ------a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la 213 (276)
T PRK05864 140 ------AYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMA 213 (276)
T ss_pred ------CEecCcccccCCCCCCcchheehHhhhCHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHH
Confidence 99999999999997 68889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHhhchhhh-cHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHccC
Q psy5402 146 KLPPQSMIFAKQLVRVPMLS-MLHEANKRECKRL-EERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 146 ~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~~-~~~~~~~~~~e~~~af~~kr 198 (198)
..||.+++.+|+.++..... ++++.++.|.... ...+.++|+++++.+|++||
T Consensus 214 ~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~d~~e~~~af~~kr 268 (276)
T PRK05864 214 GFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFVRLLTANFEEAVAARAEKR 268 (276)
T ss_pred hCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhccChhHHHHHHHHhccC
Confidence 99999999999999876554 6777777675432 23578999999999999987
No 50
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-41 Score=283.04 Aligned_cols=183 Identities=24% Similarity=0.325 Sum_probs=168.4
Q ss_pred CCCCccCchhhhhh------h---HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD------T---SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~---~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... . ...+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~----------- 127 (257)
T PRK06495 59 VFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN----------- 127 (257)
T ss_pred CcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-----------
Confidence 48999999987432 0 123456788899999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||+++|+. |+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+
T Consensus 128 -a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a 203 (257)
T PRK06495 128 -AVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLA 203 (257)
T ss_pred -CEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999999997 445679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.+|+.++.....++++.++.|...+...+.++|+++++++|++||
T Consensus 204 ~~~~K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~d~~egi~af~~kr 250 (257)
T PRK06495 204 TRLAKDALNTIENMSLRDGYRYEQDITAKLAKTEDAKEAQRAFLEKR 250 (257)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChHHHHHHHHHhccC
Confidence 99999999988777889999999999999999999999999999987
No 51
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-41 Score=288.06 Aligned_cols=185 Identities=29% Similarity=0.389 Sum_probs=164.5
Q ss_pred CCCCccCchhhhhh------------------------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEE
Q psy5402 1 MTNNPTDLINEDTD------------------------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVF 56 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------------------------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~i 56 (198)
.||+|.|++++... ....+.+++..|.++||||||+|||+|+|||++|+++||+||
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ri 139 (296)
T PRK08260 60 AFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRL 139 (296)
T ss_pred CeecCcChHHhhhcccccccccccccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEE
Confidence 48999999986420 011234678889999999999999999999999999999999
Q ss_pred eecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402 57 ASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136 (198)
Q Consensus 57 a~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 136 (198)
++++ ++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+|||++++.++
T Consensus 140 a~~~------------a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~ 207 (296)
T PRK08260 140 ASTA------------ARFGFVFGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPA 207 (296)
T ss_pred eeCC------------CEEecchhhcCcCCCcchhhhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHhhchhh--hcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 137 LWPRIHAWAKL-PPQSMIFAKQLVRVPML--SMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 137 a~~~a~~la~~-~~~a~~~~K~~l~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+++++++.. +|.+++.+|+.++.... .... ....|...+..++.++|+++++.+|++||
T Consensus 208 a~~~a~~i~~~~~~~a~~~~K~~l~~~~~~~~~~~-~~~~e~~~~~~~~~~~d~~egi~af~~kr 271 (296)
T PRK08260 208 ARALAREIADNTSPVSVALTRQMMWRMAGADHPME-AHRVDSRAIYSRGRSGDGKEGVSSFLEKR 271 (296)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccCCCcHH-HHHHHHHHHHHHccChhHHHHHHHHhcCC
Confidence 99999999985 99999999999987642 2233 33557778888999999999999999987
No 52
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=3.6e-41 Score=279.06 Aligned_cols=182 Identities=25% Similarity=0.374 Sum_probs=160.6
Q ss_pred CCCccCchhhhhh----hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEec
Q psy5402 2 TNNPTDLINEDTD----TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77 (198)
Q Consensus 2 ~s~G~Dl~~~~~~----~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~ 77 (198)
||+|.|++++... ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++
T Consensus 57 FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~~ 124 (251)
T TIGR03189 57 FSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD------------AKLGQ 124 (251)
T ss_pred eecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC------------CEEeC
Confidence 8999999985321 2234467788999999999999999999999999999999999999 99999
Q ss_pred ccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHH-HHHHhcCCHHHHHHHH
Q psy5402 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR-IHAWAKLPPQSMIFAK 156 (198)
Q Consensus 78 pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~-a~~la~~~~~a~~~~K 156 (198)
||+++|++|++ +++++++++|..++++++++|++++|+||+++||||+|+|+.+ +.+.++ +++++..||.+++.+|
T Consensus 125 pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K 201 (251)
T TIGR03189 125 PEIVLGVFAPA-ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAV 201 (251)
T ss_pred chhhcCCCCCc-hHHHHHHHhCHHHHHHHHHcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999874 5678999999999999999999999999999999999998644 456665 6899999999999999
Q ss_pred HHhhchhhhcHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 157 QLVRVPMLSMLHEAN-KRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 157 ~~l~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.++.....+++..+ +.|...+..++.++|+++++++|++||
T Consensus 202 ~~l~~~~~~~~~~~~~~~e~~~~~~~~~s~d~~eg~~af~ekr 244 (251)
T TIGR03189 202 RAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLEKR 244 (251)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHhcC
Confidence 999987777777655 467778889999999999999999987
No 53
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-41 Score=277.53 Aligned_cols=180 Identities=24% Similarity=0.344 Sum_probs=164.0
Q ss_pred CCCCccCchhhhh--hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402 1 MTNNPTDLINEDT--DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78 (198)
Q Consensus 1 ~~s~G~Dl~~~~~--~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p 78 (198)
.||+|.|+++... .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++|
T Consensus 55 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~~p 122 (243)
T PRK07854 55 VFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE------------AYFQFP 122 (243)
T ss_pred ceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC------------CEEecc
Confidence 4899999986321 12334567888999999999999999999999999999999999999 999999
Q ss_pred cccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy5402 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQL 158 (198)
Q Consensus 79 e~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 158 (198)
|+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+|++ +. ++.++++++++.||.++..+|+.
T Consensus 123 e~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~ 198 (243)
T PRK07854 123 VAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRV 198 (243)
T ss_pred ccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 22 78999999999999999999999
Q ss_pred hhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 159 VRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 159 l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.. .++++.++.|...+..++.++|+++++.+|++||
T Consensus 199 l~~~--~~~~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 236 (243)
T PRK07854 199 LNDD--GAIEEAWPAHKELFDKAWASQDAIEAQVARIEKR 236 (243)
T ss_pred HHcc--CCHHHHHHHHHHHHHHHhcCchHHHHHHHHhCCC
Confidence 9875 5678888899999999999999999999999986
No 54
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-41 Score=280.54 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=168.5
Q ss_pred CCCCccCchhhhhhh---H-----------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402 1 MTNNPTDLINEDTDT---S-----------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~---~-----------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~ 66 (198)
.||+|.|++++.... . ..+++++..+.++||||||+|||+|+|||++|+++||+||++++
T Consensus 59 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~------ 132 (262)
T PRK07509 59 AFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD------ 132 (262)
T ss_pred CcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC------
Confidence 389999999875321 0 12345667788999999999999999999999999999999999
Q ss_pred CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402 67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146 (198)
Q Consensus 67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~ 146 (198)
++|++||+++|++|++|+++++++++|..++++++++|++++|+||+++||||++++ ++.+++.++++++++
T Consensus 133 ------a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~ 204 (262)
T PRK07509 133 ------TKLSIMEAKWGLVPDMAGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQ 204 (262)
T ss_pred ------CEeecchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996 367899999999999
Q ss_pred CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.||.++..+|+.++.....++++.++.|.+.+...+.++|+++++.+|++||
T Consensus 205 ~~~~~~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~af~ekr 256 (262)
T PRK07509 205 RSPDAIAAAKRLINRSWTASVRALLARESVEQIRLLLGKNQKIAVKAQMKKR 256 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence 9999999999999998777888889999999999999999999999999987
No 55
>PLN02921 naphthoate synthase
Probab=100.00 E-value=5e-41 Score=287.22 Aligned_cols=185 Identities=22% Similarity=0.256 Sum_probs=164.5
Q ss_pred CCCCccCchhhhhhh------HH--HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT------SI--TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~------~~--~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|+|++++.... .. ...+++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 124 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~------------ 191 (327)
T PLN02921 124 AFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN------------ 191 (327)
T ss_pred ceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC------------
Confidence 489999998864211 11 1234677899999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|++||+++|++|++++++++++++|..++++++++|+.++|+||+++||||+|+|.+++.+++.+++++|+..||.++
T Consensus 192 A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al 271 (327)
T PLN02921 192 AVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAI 271 (327)
T ss_pred CEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+|+.++..... .....+.+...+...+.++|++|++++|++||
T Consensus 272 ~~~K~~l~~~~~~-~~~~~~~~~~~~~~~~~s~d~~egi~Af~ekr 316 (327)
T PLN02921 272 RVLKSALNAADDG-HAGLQELGGNATLLFYGSEEGNEGRTAYLEGR 316 (327)
T ss_pred HHHHHHHHHhhcc-hhHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence 9999999886443 33344445577888899999999999999987
No 56
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.1e-41 Score=276.44 Aligned_cols=182 Identities=22% Similarity=0.228 Sum_probs=167.3
Q ss_pred CCCCccCchhhhhhh----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402 1 MTNNPTDLINEDTDT----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~ 76 (198)
.||+|.|++++.... ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|+
T Consensus 56 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~ 123 (248)
T PRK06072 56 AFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD------------VKFV 123 (248)
T ss_pred CcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC------------CEEe
Confidence 389999999875422 234567888899999999999999999999999999999999999 9999
Q ss_pred cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK 156 (198)
Q Consensus 77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K 156 (198)
+||+++|++|++|+++++++++|. ++++++++|++++|+||+++||||++ +++.+++.++++++++.||.+++.+|
T Consensus 124 ~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K 199 (248)
T PRK06072 124 TAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAK 199 (248)
T ss_pred cchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999996 89999999999999999999999964 35778999999999999999999999
Q ss_pred HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.++.....++++.++.|.+.+..++.++|+++++++|++||
T Consensus 200 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~d~~eg~~af~~kr 241 (248)
T PRK06072 200 RMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKR 241 (248)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHhCChhHHHHHHHHhcCC
Confidence 999988778889999999999999999999999999999987
No 57
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.2e-40 Score=282.56 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=164.0
Q ss_pred CCCCccCchhhhhh-------------hH-----HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEee-cCC
Q psy5402 1 MTNNPTDLINEDTD-------------TS-----ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFAS-DTA 61 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-------------~~-----~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~-~~~ 61 (198)
.||+|.|++++... .. ..+.++...+.++||||||+|||+|+|||++|+++||+||++ ++
T Consensus 88 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~- 166 (302)
T PRK08321 88 AFCSGGDQRIRGRDGYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH- 166 (302)
T ss_pred eeecCcChhhhccccccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-
Confidence 38999999874210 00 012246677899999999999999999999999999999999 68
Q ss_pred cccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHH
Q psy5402 62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 141 (198)
Q Consensus 62 ~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 141 (198)
++|++||+++|++|++++++++++++|..+|++++++|+.++|+||+++||||++||++++.+++.+++
T Consensus 167 -----------a~f~~pe~~~Gl~p~~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a 235 (302)
T PRK08321 167 -----------ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWA 235 (302)
T ss_pred -----------CEEECCccccccCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 142 ~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++|+..||.+++.+|+.++.... ........|.+.+..++.++|+++++.+|++||
T Consensus 236 ~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~e~~~~~~~~~~~d~~egi~af~ekr 291 (302)
T PRK08321 236 REINGKSPTAMRMLKYAFNLTDD-GLVGQQLFAGEATRLAYMTDEAQEGRDAFLEKR 291 (302)
T ss_pred HHHHhCCHHHHHHHHHHHHhhhc-ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhccC
Confidence 99999999999999999987644 344445568888899999999999999999987
No 58
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.5e-41 Score=277.71 Aligned_cols=183 Identities=22% Similarity=0.337 Sum_probs=167.6
Q ss_pred CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... ....+.+++.++..+||||||+|||+|+|||++|+++||+||++++
T Consensus 62 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~---------- 131 (260)
T PRK07827 62 TFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE---------- 131 (260)
T ss_pred CccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC----------
Confidence 48999999986431 1134567788999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~ 150 (198)
++|++||+++|++|++|+++++++++ ..++++++++|+.++|+||+++||||++++ ++.+++.++++++++.||.
T Consensus 132 --a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~ 206 (260)
T PRK07827 132 --STFALTEARIGVAPAIISLTLLPRLS-PRAAARYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQ 206 (260)
T ss_pred --CEEeCcccccCCCCCcccchhHHhhh-HHHHHHHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999998864 568999999999999999999999999975 5889999999999999999
Q ss_pred HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 151 a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+++.+|+.++......++..++.|...+..++.++++++++++|++||
T Consensus 207 a~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~kr 254 (260)
T PRK07827 207 GLAESKALTTAAVLAGFDRDAEELTEESARLFVSDEAREGMTAFLQKR 254 (260)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcChhHHHHHHHHhcCC
Confidence 999999999998888889999999999999999999999999999987
No 59
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.8e-40 Score=274.50 Aligned_cols=182 Identities=20% Similarity=0.240 Sum_probs=169.4
Q ss_pred CCCCccCchhhhhhhH--HHH--HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEe
Q psy5402 1 MTNNPTDLINEDTDTS--ITL--QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~--~~~--~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~ 76 (198)
.||+|.|++++..... ..+ ++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|+
T Consensus 61 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~------------a~f~ 128 (249)
T PRK07110 61 YFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE------------SVYT 128 (249)
T ss_pred CeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC------------CEec
Confidence 4899999998743211 111 46888999999999999999999999999999999999999 9999
Q ss_pred cccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAK 156 (198)
Q Consensus 77 ~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K 156 (198)
+||+++|++|++|+++++++++|+.+|++++++|++++++||+++||||+|+|++++.+++.++++++++.||.+++.+|
T Consensus 129 ~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K 208 (249)
T PRK07110 129 ANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLK 208 (249)
T ss_pred CchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy5402 157 QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194 (198)
Q Consensus 157 ~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af 194 (198)
+.++......+++.++.|...+...|.++|.+|++++.
T Consensus 209 ~~l~~~~~~~l~~~~~~e~~~~~~~~~~~~~~egi~~~ 246 (249)
T PRK07110 209 DHLVADRRRRLPEVIEQEVAMHEKTFHQPEVKRRIESL 246 (249)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHhCCHhHHHHHHHh
Confidence 99999888899999999999999999999999999875
No 60
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=1.4e-40 Score=276.31 Aligned_cols=183 Identities=32% Similarity=0.441 Sum_probs=168.1
Q ss_pred CCCCccCchhhhh-h-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDT-D-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~-~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|+|++++.. . .....++++..+.++||||||+|||+|+|||++|+++||+|||+++
T Consensus 61 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~------------ 128 (257)
T COG1024 61 AFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED------------ 128 (257)
T ss_pred ceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC------------
Confidence 3899999999763 1 1223345889999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHHHHHhcCCHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||+++|++|+.|++++++|++|..+++++++||+.++++||+++||||++++. +++.+.+.+++++++. +|.+
T Consensus 129 a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a 207 (257)
T COG1024 129 AKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLA 207 (257)
T ss_pred cEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHH
Confidence 9999999999999987999999999999999999999999999999999999999985 7999999999999998 9999
Q ss_pred HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196 (198)
Q Consensus 152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~ 196 (198)
+..+|+.++......+++..+.+...+...+.++|++|++++|++
T Consensus 208 ~~~~k~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~eg~~a~~~ 252 (257)
T COG1024 208 LAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAFLE 252 (257)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcChhHHHHHHHHHc
Confidence 999999999987666888888888888888999999999999998
No 61
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-40 Score=274.32 Aligned_cols=185 Identities=23% Similarity=0.219 Sum_probs=169.0
Q ss_pred CCCCccCchhhhhhh-----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEE
Q psy5402 1 MTNNPTDLINEDTDT-----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATF 75 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~ 75 (198)
.||+|.|++++.... ...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|
T Consensus 60 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~------------a~f 127 (258)
T PRK06190 60 AFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER------------ARF 127 (258)
T ss_pred CccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC------------CEE
Confidence 489999999875321 224567888999999999999999999999999999999999999 999
Q ss_pred ecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHH
Q psy5402 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFA 155 (198)
Q Consensus 76 ~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~ 155 (198)
++||+++|++|++|+++++++++|+.+|++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++.+
T Consensus 128 ~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~ 207 (258)
T PRK06190 128 ADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRAL 207 (258)
T ss_pred ECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhchhhhcHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHcc
Q psy5402 156 KQLVRVPMLSMLHEANKRECKRLEERWES---EEFMNAITAFFNR 197 (198)
Q Consensus 156 K~~l~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~af~~k 197 (198)
|+.++.....++++.++.|...+...|.+ ...++..++|+.+
T Consensus 208 K~~l~~~~~~~l~~~~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 252 (258)
T PRK06190 208 KASYDDGAAAQTGDALALEAEAARAHNRSVSPDGIAARREAVMAR 252 (258)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHh
Confidence 99999987888999999999999999988 5556666666653
No 62
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.8e-40 Score=274.25 Aligned_cols=182 Identities=18% Similarity=0.140 Sum_probs=163.3
Q ss_pred CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+.+++.++.++||||||+|||+|+|||++|+++||+||++++
T Consensus 58 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~----------- 126 (255)
T PRK07112 58 VFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET----------- 126 (255)
T ss_pred CcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-----------
Confidence 48999999987431 1123456788999999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQS 151 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a 151 (198)
++|++||+++|++|+++ +.++++++|..++++++++|+.++|+||+++||||+++|+++. .+.+++++++..||.+
T Consensus 127 -a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a 202 (255)
T PRK07112 127 -APFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAA 202 (255)
T ss_pred -CEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHH
Confidence 99999999999999865 4579999999999999999999999999999999999997653 5788999999999999
Q ss_pred HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 152 ~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
++.+|+.++.. ...+.+.++.|...+...+.++|+++++.+|++||
T Consensus 203 ~~~~K~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~~~eg~~af~~kr 248 (255)
T PRK07112 203 VARYKSYASTL-DDTVAAARPAALAANIEMFADPENLRKIARYVETG 248 (255)
T ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCC
Confidence 99999999865 55678888999999999999999999999999987
No 63
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=1.8e-40 Score=285.71 Aligned_cols=184 Identities=18% Similarity=0.216 Sum_probs=167.6
Q ss_pred CCCCccCchhhhhh-----h------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTD-----T------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-----~------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|+|++++... . ...+.+++.++..+||||||+|||+|+|||++|+++||+||++++
T Consensus 60 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~--------- 130 (342)
T PRK05617 60 GFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER--------- 130 (342)
T ss_pred ceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC---------
Confidence 48999999986431 0 112245778899999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH-------------
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD------------- 136 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~------------- 136 (198)
++|++||+++|++|++|++++++++.| ..|++++++|+.++|+||+++||||+++|++++.+.
T Consensus 131 ---a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~ 206 (342)
T PRK05617 131 ---TKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTYLALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGA 206 (342)
T ss_pred ---CEeeCCccccCcCCCccceeEehhccc-HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccch
Confidence 999999999999999999999999877 789999999999999999999999999999888776
Q ss_pred -------------------------------------------------HHHHHHHHhcCCHHHHHHHHHHhhchhhhcH
Q psy5402 137 -------------------------------------------------LWPRIHAWAKLPPQSMIFAKQLVRVPMLSML 167 (198)
Q Consensus 137 -------------------------------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 167 (198)
+.+++++|++.||.+++.+|++++.....++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~~l 286 (342)
T PRK05617 207 DVVDAALAAFATPAPASELAAQRAWIDECFAGDTVEDIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGLTL 286 (342)
T ss_pred hHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCCH
Confidence 8899999999999999999999998877889
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH-cc
Q psy5402 168 HEANKRECKRLEERWESEEFMNAITAFF-NR 197 (198)
Q Consensus 168 ~~~~~~e~~~~~~~~~~~~~~e~~~af~-~k 197 (198)
++.++.|...+...+.++|+++++++|+ +|
T Consensus 287 ~~~~~~e~~~~~~~~~~~d~~egv~afl~ek 317 (342)
T PRK05617 287 EECLRRELRLALAMLRSPDFVEGVRAVLIDK 317 (342)
T ss_pred HHHHHHHHHHHHHHHhCCchhhccceEEEcC
Confidence 9999999999999999999999999997 65
No 64
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-39 Score=274.40 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=149.4
Q ss_pred HHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccc-cccCCchhhhHHHHHhc
Q psy5402 21 KYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR-GMTPEGCSSVLFPRIFG 99 (198)
Q Consensus 21 ~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~-Gi~p~~g~~~~l~~~vG 99 (198)
..+..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++ |+++ ++++ .+++|
T Consensus 103 ~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~------------A~f~~pe~~l~G~~~--~~~~--~~~vG 166 (298)
T PRK12478 103 QKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD------------AVIGTPYSRMWGAYL--TGMW--LYRLS 166 (298)
T ss_pred HHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC------------cEEeccccccccCCc--hhHH--HHHhh
Confidence 3566789999999999999999999999999999999999 9999999997 8875 2333 35699
Q ss_pred HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhh-hcHHHHHHHHHHHH
Q psy5402 100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPML-SMLHEANKRECKRL 178 (198)
Q Consensus 100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~-~~~~~~~~~e~~~~ 178 (198)
..+|++++++|++++|+||+++||||+|||++++.+++.+++++++..||.+++.+|+.++.... .++++.++.|...+
T Consensus 167 ~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~l~~~~~~e~~~~ 246 (298)
T PRK12478 167 LAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYENMGLASTQTLGGILD 246 (298)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766 35899999999999
Q ss_pred HHHhCCHHHH--------HHHHHHHccC
Q psy5402 179 EERWESEEFM--------NAITAFFNRK 198 (198)
Q Consensus 179 ~~~~~~~~~~--------e~~~af~~kr 198 (198)
..++.++|++ ||+++|++||
T Consensus 247 ~~~~~s~d~~e~~~~~~~egv~Af~ekR 274 (298)
T PRK12478 247 GLMRNTPDALEFIRTAETQGVRAAVERR 274 (298)
T ss_pred HHHhcChhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999997 5999999997
No 65
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=3e-39 Score=291.07 Aligned_cols=185 Identities=14% Similarity=0.115 Sum_probs=170.8
Q ss_pred CCCccCchhhhhhh----H---HHHHHHHHHHhcCCCcEEEEE-cCccchHH-HHHhhhcCEEEe-------ecCCcccC
Q psy5402 2 TNNPTDLINEDTDT----S---ITLQKYVAAFIDYPKPLIAIV-NGPAIGIS-ATTLALCDIVFA-------SDTAILLN 65 (198)
Q Consensus 2 ~s~G~Dl~~~~~~~----~---~~~~~~~~~i~~~~kp~IA~v-~G~a~GgG-~~lalacD~~ia-------~~~~~~~~ 65 (198)
||+|.|++.+.... . ..+++++.+|..+||||||+| ||+|+||| ++|+++||+||+ +++
T Consensus 330 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~----- 404 (546)
T TIGR03222 330 LVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE----- 404 (546)
T ss_pred eecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-----
Confidence 89999997432111 1 223557889999999999999 89999999 999999999999 888
Q ss_pred CCcccceEEEecccccccccCCchhhhHHHHHh-cHHHH--HHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402 66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF-GNSVA--SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 142 (198)
Q Consensus 66 ~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v-G~~~a--~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~ 142 (198)
++|++||+++|++|++|++++|++++ |.+++ ++++++|+.++|+||+++||||+++|++++.+++.++++
T Consensus 405 -------a~f~~~e~~lGl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~ 477 (546)
T TIGR03222 405 -------PAITLSELNFGLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALE 477 (546)
T ss_pred -------CEEeCCccccccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHH
Confidence 99999999999999999999999998 99988 559999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHccC
Q psy5402 143 AWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMN---AITAFFNRK 198 (198)
Q Consensus 143 ~la~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e---~~~af~~kr 198 (198)
++++.||.+++.+|+.++.....++++. +..|..++..++.++|.+| ++++|++||
T Consensus 478 ~la~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr 537 (546)
T TIGR03222 478 ERASFSPDALTGLEANLRFAGPETMETRIFGRLTAWQNWIFNRPNAVGENGALKVYGSGK 537 (546)
T ss_pred HHHhcCHHHHHHHHHHHhhcCCcChhhhHHHHHHHHHHHHhcCCcccchhhHHHHHccCC
Confidence 9999999999999999999988899998 9999999999999999999 999999997
No 66
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.1e-39 Score=292.66 Aligned_cols=185 Identities=14% Similarity=0.117 Sum_probs=170.0
Q ss_pred CCCccCchhhhh-------hhHHHHHHHHHHHhcCCCcEEEEEc-CccchHH-HHHhhhcCEEEee-------cCCcccC
Q psy5402 2 TNNPTDLINEDT-------DTSITLQKYVAAFIDYPKPLIAIVN-GPAIGIS-ATTLALCDIVFAS-------DTAILLN 65 (198)
Q Consensus 2 ~s~G~Dl~~~~~-------~~~~~~~~~~~~i~~~~kp~IA~v~-G~a~GgG-~~lalacD~~ia~-------~~~~~~~ 65 (198)
||+|+|++.... .....+++++.+|..+||||||+|| |+|+||| ++|+++||+||++ ++
T Consensus 334 F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~----- 408 (550)
T PRK08184 334 AVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA----- 408 (550)
T ss_pred EEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-----
Confidence 899999753221 1122345678899999999999997 9999999 9999999999999 88
Q ss_pred CCcccceEEEecccccccccCCchhhhHHHHH-hcHHHHHHH--HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402 66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI-FGNSVASEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 142 (198)
Q Consensus 66 ~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~-vG~~~a~~l--ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~ 142 (198)
++|++||+++|++|++|++++|+++ +|.++|+++ +++|++++|+||+++||||+++|++++++++.++++
T Consensus 409 -------a~f~~pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~ 481 (550)
T PRK08184 409 -------PAITLSALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALE 481 (550)
T ss_pred -------CEEECccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHH
Confidence 9999999999999999999999998 699999997 589999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhchhhhcHHHH-HHHHHHHHHHHhCCHHHHH---HHHHHHccC
Q psy5402 143 AWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMN---AITAFFNRK 198 (198)
Q Consensus 143 ~la~~~~~a~~~~K~~l~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~e---~~~af~~kr 198 (198)
++++.||.+++.+|+.++.....++++. +..|.+++..++.++|.+| ++++|++||
T Consensus 482 ~ia~~~p~a~~~~K~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~d~~e~~~g~~af~ekr 541 (550)
T PRK08184 482 ERASLSPDALTGMEANLRFAGPETMETRIFGRLTAWQNWIFQRPNAVGEKGALKVYGTGQ 541 (550)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCcccccchHHHHhccCC
Confidence 9999999999999999999988999999 9999999999999999999 999999997
No 67
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.5e-38 Score=277.07 Aligned_cols=184 Identities=18% Similarity=0.241 Sum_probs=162.6
Q ss_pred CCCCccCchhhhhhh------HH---HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTDT------SI---TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~------~~---~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|+|++++.... .. .+..++..|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 67 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~----------- 135 (379)
T PLN02874 67 AFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK----------- 135 (379)
T ss_pred CccCccCHHHHHhhcccchHHHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-----------
Confidence 389999999874311 11 2234467889999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH---H------------
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER---D------------ 136 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~---~------------ 136 (198)
++|++||+++|++|++|+++++++++|. .++++++||++++++||+++||||++||++++.+ +
T Consensus 136 -a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~ 213 (379)
T PLN02874 136 -TVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAV 213 (379)
T ss_pred -eEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHHcCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999999885 8999999999999999999999999999888765 2
Q ss_pred ----------------------------------------------------HHHHHHHHhcCCHHHHHHHHHHhhchhh
Q psy5402 137 ----------------------------------------------------LWPRIHAWAKLPPQSMIFAKQLVRVPML 164 (198)
Q Consensus 137 ----------------------------------------------------a~~~a~~la~~~~~a~~~~K~~l~~~~~ 164 (198)
+.+++++|++.||.+++.+|++++....
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~ 293 (379)
T PLN02874 214 QEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRK 293 (379)
T ss_pred HHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 2478999999999999999999998877
Q ss_pred hcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH-cc
Q psy5402 165 SMLHEANKRECKRLEERWE---SEEFMNAITAFF-NR 197 (198)
Q Consensus 165 ~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~-~k 197 (198)
.++++.++.|.......+. ++|++||+++|+ +|
T Consensus 294 ~~l~~~l~~e~~~~~~~~~~~~~~D~~EGv~AflidK 330 (379)
T PLN02874 294 QSLAECLKKEFRLTMNILRSTVSDDVYEGIRALVIDK 330 (379)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCcchhhccceEEEcC
Confidence 7899999999888777777 999999999997 66
No 68
>KOG1679|consensus
Probab=100.00 E-value=4.4e-39 Score=254.17 Aligned_cols=186 Identities=22% Similarity=0.284 Sum_probs=175.2
Q ss_pred CCCCccCchhhhhhhH-------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDTS-------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~-------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
+||+|.||+|-.+.+. ..++.++..|..+|.||||+|+|.|.|||++++++||+|+|+++ +
T Consensus 88 vFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~------------a 155 (291)
T KOG1679|consen 88 VFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS------------A 155 (291)
T ss_pred eeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh------------c
Confidence 5899999999765443 35677889999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch----hHHHHHHHHHHHHhcCCH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE----EIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~----~l~~~a~~~a~~la~~~~ 149 (198)
+|+++|++++|+|+.|++++|+|++|...|+++++|++.+++.||..+||||++|... ...+.+.++|+++..+.|
T Consensus 156 kmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gP 235 (291)
T KOG1679|consen 156 KMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGP 235 (291)
T ss_pred cccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999999999999999999999764 677889999999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
.+++..|..++..+..++...+..|...+.....+.|-.|++.+|.+||
T Consensus 236 iavr~aKlAIn~G~evdiasgl~iEe~CYaq~i~t~drLeglaaf~ekr 284 (291)
T KOG1679|consen 236 IAVRLAKLAINLGMEVDIASGLSIEEMCYAQIIPTKDRLEGLAAFKEKR 284 (291)
T ss_pred hhhhHHHHHhccCceecccccccHHHHHHHhcCcHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999987
No 69
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.3e-37 Score=289.72 Aligned_cols=186 Identities=22% Similarity=0.209 Sum_probs=166.9
Q ss_pred CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|+|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 63 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~---------- 132 (715)
T PRK11730 63 AFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD---------- 132 (715)
T ss_pred ccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC----------
Confidence 48999999987531 1124466788999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC---
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL--- 147 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~--- 147 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++++..
T Consensus 133 --a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~ 210 (715)
T PRK11730 133 --ARIGLPETKLGIMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGKLD 210 (715)
T ss_pred --CEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred ---------CHH---------HHHHHHH------------------HhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402 148 ---------PPQ---------SMIFAKQ------------------LVRVPMLSMLHEANKRECKRLEERWESEEFMNAI 191 (198)
Q Consensus 148 ---------~~~---------a~~~~K~------------------~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~ 191 (198)
+|. +++.+|+ .++.....++++.++.|.+.+..++.++|+++++
T Consensus 211 ~~~~~~~~~~p~a~~~~~~~~~~~~~k~~~~~~~~~~~pa~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~d~~egi 290 (715)
T PRK11730 211 WKARRQPKLEPLKLSKIEAMMSFTTAKGMVAQKAGKHYPAPMTAVKTIEAAAGLGRDEALELEAKGFVKLAKTNVARALV 290 (715)
T ss_pred cccccCcccccccccchhHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 354 4466664 5677666688999999999999999999999999
Q ss_pred HHHHccC
Q psy5402 192 TAFFNRK 198 (198)
Q Consensus 192 ~af~~kr 198 (198)
++|+++|
T Consensus 291 ~aF~~~~ 297 (715)
T PRK11730 291 GIFLNDQ 297 (715)
T ss_pred HHHHHHH
Confidence 9999875
No 70
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1e-37 Score=254.07 Aligned_cols=151 Identities=25% Similarity=0.341 Sum_probs=140.3
Q ss_pred CCCCccCchhhhhhh-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceE
Q psy5402 1 MTNNPTDLINEDTDT-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQA 73 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a 73 (198)
.||+|.|++++.... ...+++++.++.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 63 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~------------a 130 (222)
T PRK05869 63 IFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN------------V 130 (222)
T ss_pred CcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC------------C
Confidence 389999999875321 224567888999999999999999999999999999999999999 9
Q ss_pred EEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHH
Q psy5402 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMI 153 (198)
Q Consensus 74 ~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~ 153 (198)
+|++||+++|++|++|++.++++++|..++++++++|++++|+||+++||||+++|++++.+++.++++++++.||.+++
T Consensus 131 ~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~ 210 (222)
T PRK05869 131 KFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALA 210 (222)
T ss_pred EEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhchh
Q psy5402 154 FAKQLVRVPM 163 (198)
Q Consensus 154 ~~K~~l~~~~ 163 (198)
.+|+.++..+
T Consensus 211 ~~K~~~~~~~ 220 (222)
T PRK05869 211 AAKAGISDVY 220 (222)
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 71
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-37 Score=251.60 Aligned_cols=166 Identities=18% Similarity=0.146 Sum_probs=150.0
Q ss_pred CCCCccCchhhhhh------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEE
Q psy5402 1 MTNNPTDLINEDTD------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQAT 74 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~ 74 (198)
.||+|.|++++... ....+.+++.++.++||||||+|||+|+|||++|+++||+||+++++ ++
T Consensus 56 ~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~-----------a~ 124 (229)
T PRK06213 56 IFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGP-----------FK 124 (229)
T ss_pred ceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCC-----------cE
Confidence 38999999987432 12345677889999999999999999999999999999999999885 89
Q ss_pred EecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHH
Q psy5402 75 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIF 154 (198)
Q Consensus 75 ~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~ 154 (198)
|++||+++|++|+.++..++++++|...+++++++|++++|+||+++||||+++|++++.+.+.++++++++.||.+++.
T Consensus 125 f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~ 204 (229)
T PRK06213 125 IGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAA 204 (229)
T ss_pred EECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhchhhhcHHHHHHHHHHH
Q psy5402 155 AKQLVRVPMLSMLHEANKRECKR 177 (198)
Q Consensus 155 ~K~~l~~~~~~~~~~~~~~e~~~ 177 (198)
+|+.++.....++++.++.|...
T Consensus 205 ~K~~l~~~~~~~l~~~~~~~~~~ 227 (229)
T PRK06213 205 TKLKVRAAALEAIRAAIEGDAAE 227 (229)
T ss_pred HHHHHHHHHHHHHHhchhhhhhh
Confidence 99999998777788877777654
No 72
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=5.8e-37 Score=285.24 Aligned_cols=186 Identities=19% Similarity=0.225 Sum_probs=168.1
Q ss_pred CCCCccCchhhhhh--------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD--------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 64 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~---------- 133 (708)
T PRK11154 64 NFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPK---------- 133 (708)
T ss_pred CcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCC----------
Confidence 38999999987431 1124456788999999999999999999999999999999999987 1
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH--------
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA-------- 143 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~-------- 143 (198)
++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+++|++++.+++.+++++
T Consensus 134 -a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~ 212 (708)
T PRK11154 134 -TVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPL 212 (708)
T ss_pred -ceEeCccccCCCCCCccHHhHHHhhcCHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -----HhcCCHH----------------------HHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402 144 -----WAKLPPQ----------------------SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196 (198)
Q Consensus 144 -----la~~~~~----------------------a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~ 196 (198)
+++.+|. +...+|+.++.....++++.++.|.+.+..++.|+|.++++++|+.
T Consensus 213 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~A~~~~k~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~aF~~ 292 (708)
T PRK11154 213 PVRERLLEGNPLGRALLFKQARKKTLAKTQGNYPAPERILDVVRTGLEKGMSSGYEAEARAFGELAMTPESAALRSIFFA 292 (708)
T ss_pred CchhhhcccCchhHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4666654 7889999999988888999999999999999999999999999985
Q ss_pred c
Q psy5402 197 R 197 (198)
Q Consensus 197 k 197 (198)
.
T Consensus 293 ~ 293 (708)
T PRK11154 293 T 293 (708)
T ss_pred H
Confidence 4
No 73
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.2e-36 Score=254.40 Aligned_cols=182 Identities=18% Similarity=0.103 Sum_probs=148.8
Q ss_pred CCCCccCchhhhhh----hHH-------HHHHHHHHHh---cCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCC
Q psy5402 1 MTNNPTDLINEDTD----TSI-------TLQKYVAAFI---DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----~~~-------~~~~~~~~i~---~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~ 66 (198)
.||+|.|++++... ... .+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++
T Consensus 78 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~------ 151 (287)
T PRK08788 78 VFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG------ 151 (287)
T ss_pred ceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC------
Confidence 48999999986421 111 1122233333 799999999999999999999999999999999
Q ss_pred CcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402 67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146 (198)
Q Consensus 67 ~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~ 146 (198)
++|++||+++|++|++|+++++++++|+.++++++++|+.++|+||+++||||+++|++++.+++.+++++++.
T Consensus 152 ------a~f~~pev~lGl~p~~g~~~~l~~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~ 225 (287)
T PRK08788 152 ------AKMGFPEILFNLFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKR 225 (287)
T ss_pred ------CEeeCchhhhCcCCCchHHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhC-CHHHHHHHHHHH
Q psy5402 147 LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE-SEEFMNAITAFF 195 (198)
Q Consensus 147 ~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~e~~~af~ 195 (198)
. |.+...+|+..+.....++++.++.|..+...++. .....+-|..|.
T Consensus 226 ~-~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (287)
T PRK08788 226 K-LNGWRAMLRARRRVNPLSLEELMDITEIWVDAALQLEEKDLRTMERLV 274 (287)
T ss_pred C-ccHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 7 66777777766665556778888887766665554 333344455543
No 74
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.5e-36 Score=265.21 Aligned_cols=179 Identities=20% Similarity=0.221 Sum_probs=157.8
Q ss_pred CCCCccCchhhhhhh-----------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTDT-----------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-----------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|+|++++.... +....++...|.++|||+||+|||+|+|||++|+++||+||++++
T Consensus 93 aFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~--------- 163 (401)
T PLN02157 93 AFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR--------- 163 (401)
T ss_pred CccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC---------
Confidence 389999999874211 111233567789999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++|++||+++|++|++|++++|++++|. .++++++||+.++|+||+++||||++||++++ +.+.+++++++..+|
T Consensus 164 ---a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p 238 (401)
T PLN02157 164 ---TIFATPETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDP 238 (401)
T ss_pred ---CEEEChhhhcCCCCCccHHHHHHHhhhH-HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCH
Confidence 9999999999999999999999999996 79999999999999999999999999999998 678899999999999
Q ss_pred HHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy5402 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194 (198)
Q Consensus 150 ~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af 194 (198)
.++..+|+.++.. ..+....+..+...+..++.+++++|++.+|
T Consensus 239 ~av~~~k~~~~~~-~~~~~~~l~~~~~~i~~~f~~~d~~ei~~al 282 (401)
T PLN02157 239 SVVESCLEKCAEV-AHPEKTGVIRRIDLLEKCFSHDTVEEIIDSL 282 (401)
T ss_pred HHHHHHHHHHhcc-cCCcchhHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999875 2334556666788888999999999999999
No 75
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-36 Score=254.30 Aligned_cols=154 Identities=28% Similarity=0.392 Sum_probs=141.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHh
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF 98 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v 98 (198)
+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ |+ .+.+++++++
T Consensus 107 ~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~------------a~f~~pe~~lGl-~~-~~~~~l~~~i 172 (288)
T PRK08290 107 YLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD------------AFFSDPVVRMGI-PG-VEYFAHPWEL 172 (288)
T ss_pred HHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC------------CEecCcccccCc-Cc-chHHHHHHHh
Confidence 456677899999999999999999999999999999999999 999999999999 44 3466788999
Q ss_pred cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhh-cHHHHHHHHHHH
Q psy5402 99 GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLS-MLHEANKRECKR 177 (198)
Q Consensus 99 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~-~~~~~~~~e~~~ 177 (198)
|+.+++++++||+.++|+||+++||||++||++++.+++.++++++++.||.+++.+|+.++..... .++..++.|...
T Consensus 173 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~~~~~~~~~~~~ 252 (288)
T PRK08290 173 GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDAQGFRAALDAVFDL 252 (288)
T ss_pred hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 588888888888
Q ss_pred HHHHh-CCHH
Q psy5402 178 LEERW-ESEE 186 (198)
Q Consensus 178 ~~~~~-~~~~ 186 (198)
....+ .+++
T Consensus 253 ~~~~~~~~~~ 262 (288)
T PRK08290 253 HQLGHAHNAE 262 (288)
T ss_pred HHHccccchh
Confidence 88878 6665
No 76
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=3e-36 Score=280.02 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=165.6
Q ss_pred CCCCccCchhhhhh----h----HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD----T----SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----~----~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~ 71 (198)
.||+|.|++++... . ...+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ +
T Consensus 59 ~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~---------- 128 (699)
T TIGR02440 59 NFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDK---------- 128 (699)
T ss_pred ceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCC----------
Confidence 38999999987421 1 224567888999999999999999999999999999999999975 2
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH---------
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH--------- 142 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~--------- 142 (198)
++|++||+++|++|++|+++++++++|..+|++++++|+.++|+||+++||||+++|++++.+++.++++
T Consensus 129 -a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~ 207 (699)
T TIGR02440 129 -TVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPL 207 (699)
T ss_pred -cEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----HHhcCCHHH----------------------HHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402 143 ----AWAKLPPQS----------------------MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196 (198)
Q Consensus 143 ----~la~~~~~a----------------------~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~ 196 (198)
+++..+|.+ ...+|+.++.....+++++++.|.+.+..++.|+|.++++.+|+.
T Consensus 208 ~~~~~~~~~~~~a~~~~~~~~~k~~~~~~~~~~~a~~~~~~~i~~~~~~~~~~~l~~E~~~~~~~~~s~~~~~~~~~f~~ 287 (699)
T TIGR02440 208 SLQERLLEGTPLGRALLFDQAAKKTAKKTQGNYPAAERILDVVRQGLAQGMQKGLDAEARAFGELVMTPESAALRSIFFA 287 (699)
T ss_pred cchhhhcccCchhHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 677777666 345566688877778999999999999999999999999999975
Q ss_pred c
Q psy5402 197 R 197 (198)
Q Consensus 197 k 197 (198)
.
T Consensus 288 ~ 288 (699)
T TIGR02440 288 T 288 (699)
T ss_pred H
Confidence 3
No 77
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-35 Score=250.42 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=122.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHh
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIF 98 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~v 98 (198)
+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|.+|+.+ .+++++
T Consensus 116 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~------------a~f~~pe~~~gg~~~~~---~~~~~v 180 (302)
T PRK08272 116 FVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD------------AKIGYPPTRVWGVPATG---MWAYRL 180 (302)
T ss_pred HHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC------------CEecCcchhcccCChHH---HHHHHh
Confidence 446788899999999999999999999999999999999999 99999999986666532 567889
Q ss_pred cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhh
Q psy5402 99 GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLS 165 (198)
Q Consensus 99 G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~ 165 (198)
|.++|++++++|++++|+||+++||||+++|++++.+++.+++++|+..||.+++.+|+.++..+..
T Consensus 181 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~~ 247 (302)
T PRK08272 181 GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALLQ 247 (302)
T ss_pred hHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987543
No 78
>KOG0016|consensus
Probab=100.00 E-value=4.2e-35 Score=237.25 Aligned_cols=185 Identities=40% Similarity=0.707 Sum_probs=173.1
Q ss_pred CCCccCchhhhhhhH-----------H---HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCC
Q psy5402 2 TNNPTDLINEDTDTS-----------I---TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHP 67 (198)
Q Consensus 2 ~s~G~Dl~~~~~~~~-----------~---~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~ 67 (198)
+|+|.|+..+..... . .+..++..+..+|||+||.|||+|+|-|..+...||+++|+++
T Consensus 65 f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk------- 137 (266)
T KOG0016|consen 65 FCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK------- 137 (266)
T ss_pred EeeccccchhhhcCCCcccccchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-------
Confidence 688999888754321 1 2223788999999999999999999999999999999999988
Q ss_pred cccceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402 68 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147 (198)
Q Consensus 68 ~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~ 147 (198)
++|..|++.+|..|++|+++.+++++|...|.++++.|++++|+||.+.|||+++++.+.+.+.+...++++++.
T Consensus 138 -----a~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l 212 (266)
T KOG0016|consen 138 -----AWFQTPFAKLGQSPEGCSSVTLPKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKL 212 (266)
T ss_pred -----eEEeccchhcCCCCCcceeeeehHhhchhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 148 ~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|.+++.+|+++|......+..+.+.|+..+...|.++|..+++.+|+.|+
T Consensus 213 ~p~sl~~~K~L~rs~~k~~l~~an~~E~~~l~~~W~s~e~~~~~~~~~~~~ 263 (266)
T KOG0016|consen 213 SPESLLGMKKLLRSNIKEELIKANEEECNVLLKQWVSAECLARFKQYLSKK 263 (266)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccChHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999864
No 79
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1.2e-34 Score=247.81 Aligned_cols=149 Identities=19% Similarity=0.156 Sum_probs=126.9
Q ss_pred CCCCccCchhhhhh----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... ....+++++..|..+||||||+|||+|+|||++|+++||+||++++
T Consensus 85 aFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~---------- 154 (360)
T TIGR03200 85 AFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL---------- 154 (360)
T ss_pred cccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC----------
Confidence 48999999987541 1123457788899999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhH------------HHHHH
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI------------ERDLW 138 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l------------~~~a~ 138 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|+.++ ++.+.
T Consensus 155 --A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~ 232 (360)
T TIGR03200 155 --ANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLD 232 (360)
T ss_pred --CEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887 55555
Q ss_pred HHHHHHhcCCHH--HHHHHHHHhhc
Q psy5402 139 PRIHAWAKLPPQ--SMIFAKQLVRV 161 (198)
Q Consensus 139 ~~a~~la~~~~~--a~~~~K~~l~~ 161 (198)
++++.+...++. +++..|.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 233 EFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HHhHHhcCCCcchhHHHHHHHHHhc
Confidence 555555555544 55555555554
No 80
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=5.2e-34 Score=234.65 Aligned_cols=153 Identities=20% Similarity=0.179 Sum_probs=132.1
Q ss_pred CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+++++.++.++||||||+|||+|+|||++|+++||+||+++++
T Consensus 56 ~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~---------- 125 (239)
T PLN02267 56 FFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDR---------- 125 (239)
T ss_pred ceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCC----------
Confidence 38999999886421 11245667889999999999999999999999999999999998542
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHH-HHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHHHHHHHhcC--
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA-SELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKL-- 147 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a-~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~la~~-- 147 (198)
++|++||+++|++++.+++.++++++|..++ ++++++|++|+|+||+++||||+++|+ +++.+++.++++++++.
T Consensus 126 -a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~ 204 (239)
T PLN02267 126 -GVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKW 204 (239)
T ss_pred -CeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccC
Confidence 8999999999997444457789999999999 699999999999999999999999985 68999999999999987
Q ss_pred CHHHHHHHHHHhhchhh
Q psy5402 148 PPQSMIFAKQLVRVPML 164 (198)
Q Consensus 148 ~~~a~~~~K~~l~~~~~ 164 (198)
++.++..+|+.++....
T Consensus 205 ~~~~~~~~k~~~~~~~~ 221 (239)
T PLN02267 205 NGEVYASIRKSLLPEVC 221 (239)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 56789999999877543
No 81
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=1.7e-33 Score=262.03 Aligned_cols=186 Identities=23% Similarity=0.235 Sum_probs=156.6
Q ss_pred CCCCccCchhhhhh---h-------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 1 MTNNPTDLINEDTD---T-------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---~-------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
.||+|.|++++... . ....++++.+|.++||||||+|||+|+|||++|+++||+||++++
T Consensus 63 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~---------- 132 (714)
T TIGR02437 63 AFIVGADITEFLGLFALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT---------- 132 (714)
T ss_pred ccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC----------
Confidence 48999999987531 1 123567889999999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC--
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP-- 148 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~-- 148 (198)
++|++||+++|++|++|+++++++++|..+|++++++|++++|+||+++||||+++|++++.+.+.++++++....
T Consensus 133 --a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~~~~~ 210 (714)
T TIGR02437 133 --AKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAINGKLD 210 (714)
T ss_pred --CEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997744310
Q ss_pred ------H-----------HH--HHHHH------------------HHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy5402 149 ------P-----------QS--MIFAK------------------QLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI 191 (198)
Q Consensus 149 ------~-----------~a--~~~~K------------------~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~ 191 (198)
+ .. ....+ +.++.....+++++++.|.+.|.+++.|++.+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pap~~~~~~v~~~~~~~~~~gl~~E~~~f~~l~~s~~a~~l~ 290 (714)
T TIGR02437 211 WKAKRQPKLEPLKLSKIEAMMSFTTAKGMVAQVAGPHYPAPMTAVKTIEKAARFGRDKALEIEAKGFVKLAKTSEAKALI 290 (714)
T ss_pred ccccCCCCcccccccchHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 0 00 11111 12222333467899999999999999999999999
Q ss_pred HHHHccC
Q psy5402 192 TAFFNRK 198 (198)
Q Consensus 192 ~af~~kr 198 (198)
+.|+.+|
T Consensus 291 ~~ff~~r 297 (714)
T TIGR02437 291 GLFLNDQ 297 (714)
T ss_pred HHHhhhH
Confidence 9998654
No 82
>KOG1681|consensus
Probab=100.00 E-value=8.1e-35 Score=231.70 Aligned_cols=186 Identities=26% Similarity=0.329 Sum_probs=173.0
Q ss_pred CCCCccCchhhhhhh-------------------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402 1 MTNNPTDLINEDTDT-------------------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------------------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~ 61 (198)
+||+|.|+..+.... ...+|+.+..|++||||||++|+|+|+|||+.|..+||+|||+++
T Consensus 78 hFcaGIDl~~~~~~~~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD- 156 (292)
T KOG1681|consen 78 HFCAGIDLNDMASDRILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD- 156 (292)
T ss_pred ceecccCcchhhhhhccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-
Confidence 589999987764331 125677889999999999999999999999999999999999999
Q ss_pred cccCCCcccceEEEecccccccccCCchhhhHHHHHhc-HHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHHHHHHH
Q psy5402 62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG-NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWP 139 (198)
Q Consensus 62 ~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG-~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~ 139 (198)
|.|+.-|+.+|+..+.|...++|..+| .+.++++.+|++.|+|.||++.|||.+|+|+ +++.+.+..
T Consensus 157 -----------AffsvkEVDvglaADvGTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~ 225 (292)
T KOG1681|consen 157 -----------AFFSVKEVDVGLAADVGTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALP 225 (292)
T ss_pred -----------ceeeeeeeeeehhhchhhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHH
Confidence 999999999999999999999999999 8999999999999999999999999999996 779999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 140 RIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 140 ~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+|+.|+..+|.++..+|..++...+.+.++.+.+-..+....+.+.|..+++.+-++|+
T Consensus 226 mA~~Ia~KSpvaVqgTK~~L~ysrehsv~~sLnyvatwNms~L~s~Dl~~av~a~m~k~ 284 (292)
T KOG1681|consen 226 MAELIASKSPVAVQGTKENLLYSREHSVEESLNYVATWNMSMLLSDDLVKAVMAQMEKL 284 (292)
T ss_pred HHHHhccCCceeeechHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999988764
No 83
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=1.3e-32 Score=239.33 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=146.9
Q ss_pred CCCCccCchhhhhhh--------HHHH---HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTDT--------SITL---QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~---~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|+|++++.... ...+ ..+...|.++|||+||+|||+|+|||++|+++||+||++++
T Consensus 65 ~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~--------- 135 (381)
T PLN02988 65 AFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN--------- 135 (381)
T ss_pred CcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC---------
Confidence 389999999874211 0112 23456788999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHH--------
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI-------- 141 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a-------- 141 (198)
++|++||+++|++|++|++++|+|++|. .++++++||++++|+||+++||+|++||++++.+.+.+++
T Consensus 136 ---a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~ 211 (381)
T PLN02988 136 ---TVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPT 211 (381)
T ss_pred ---cEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHH
Confidence 9999999999999999999999999997 6889999999999999999999999999877666444433
Q ss_pred -----------------------------------------------------------HHHhcCCHHHHHHHHHHhhch
Q psy5402 142 -----------------------------------------------------------HAWAKLPPQSMIFAKQLVRVP 162 (198)
Q Consensus 142 -----------------------------------------------------------~~la~~~~~a~~~~K~~l~~~ 162 (198)
+.+.+.+|.++..+.+++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~f~~~~~~~i~~~L~~~~~~~~~~wa~~~~~~l~~~sP~sl~vt~~~~~~~ 291 (381)
T PLN02988 212 FASTILDAYTQHPRLKPQSAYHRLDVIDRCFSRRTVEEIISALEREATQEADGWISATIQALKKASPASLKISLRSIREG 291 (381)
T ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHhCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 122233444555555555555
Q ss_pred hhhcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Q psy5402 163 MLSMLHEANKRECKRLEERWE---SEEFMNAITAFFN 196 (198)
Q Consensus 163 ~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~~ 196 (198)
...++.+.++.|......+.. ++||.||+++-+-
T Consensus 292 ~~~sl~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li 328 (381)
T PLN02988 292 RLQGVGQCLIREYRMVCHVMKGEISKDFVEGCRAILV 328 (381)
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHhc
Confidence 455778888888888888887 6999999999764
No 84
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=1.3e-32 Score=256.73 Aligned_cols=186 Identities=19% Similarity=0.196 Sum_probs=153.5
Q ss_pred CCCCccCchhhhhh--------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD--------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~--------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+++++.+|.++||||||+|||+|+|||++|+++||+|||+++ +
T Consensus 71 ~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~---------- 140 (737)
T TIGR02441 71 SFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRK---------- 140 (737)
T ss_pred cceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCC----------
Confidence 48999999998521 1134567889999999999999999999999999999999999987 1
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc-------------hhHHHHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-------------EEIERDLW 138 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~ 138 (198)
++|++||+++|++|++|++++|++++|..+|++++++|++++|+||+++||||+|+|+ +++.+.+.
T Consensus 141 -a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~ 219 (737)
T TIGR02441 141 -TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAV 219 (737)
T ss_pred -CeEecchhhhCCCCCccHhhhHHHhhCHHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999986 55788888
Q ss_pred HHHHHHhcCC----------HH--------------HHHHHH------------------HHhhchhhhcHHHHHHHHHH
Q psy5402 139 PRIHAWAKLP----------PQ--------------SMIFAK------------------QLVRVPMLSMLHEANKRECK 176 (198)
Q Consensus 139 ~~a~~la~~~----------~~--------------a~~~~K------------------~~l~~~~~~~~~~~~~~e~~ 176 (198)
+++++++..+ +. .+...+ +.+......+++++++.|.+
T Consensus 220 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Ap~~~l~~v~~~~~~~~~~gl~~E~~ 299 (737)
T TIGR02441 220 KFAQGLANGKLSINRDKGLVHKITQYVMTNPFVRQQVYKTAEDKVMKQTKGLYPAPLKILDVVRTGYDQGPDAGYEAESK 299 (737)
T ss_pred HHHHHhhcccCCccccccccCccchhhcccchhHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8887765321 00 011111 22222333467899999999
Q ss_pred HHHHHhCCHHHHHHHHHHHcc
Q psy5402 177 RLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 177 ~~~~~~~~~~~~e~~~af~~k 197 (198)
.|.+++.|++.+.-++.|+..
T Consensus 300 ~f~~l~~s~~a~al~~~f~~~ 320 (737)
T TIGR02441 300 AFGELSMTFESKALIGLFHGQ 320 (737)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999998753
No 85
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.3e-31 Score=234.13 Aligned_cols=183 Identities=21% Similarity=0.201 Sum_probs=149.9
Q ss_pred CCCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcc
Q psy5402 1 MTNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVF 69 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~ 69 (198)
.||+|+|++++... .+..++++...|.++|||+||+|||+|+|||++|+++||+||++++
T Consensus 98 aFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~--------- 168 (407)
T PLN02851 98 AFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK--------- 168 (407)
T ss_pred CccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC---------
Confidence 38999999987431 1123445667788999999999999999999999999999999999
Q ss_pred cceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH--------------
Q psy5402 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER-------------- 135 (198)
Q Consensus 70 ~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~-------------- 135 (198)
++|++||+++|++|++|++++++|+.|.. ++++++||+.+++++|+++||+|+++|++++.+
T Consensus 169 ---a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~l~~~l~~~~~~~~~ 244 (407)
T PLN02851 169 ---TVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLALTGQKLNGVEMIACGLATHYCLNARLPLIEERLGKLLTDDPA 244 (407)
T ss_pred ---ceEecchhccCCCCCccHHHHHHHhcCHH-HHHHHHhCCcCCHHHHHHCCCceeecCHhhHHHHHHHHHhhccCCHH
Confidence 99999999999999999999999998874 899999999999999999999999998764421
Q ss_pred -----------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHhhch
Q psy5402 136 -----------------------------------------------------DLWPRIHAWAKLPPQSMIFAKQLVRVP 162 (198)
Q Consensus 136 -----------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~~ 162 (198)
.+.+.++.+.+.||.++..+.+++++.
T Consensus 245 ~~~~~l~~~~~~~~~~~~~~~~~~~~I~~~F~~~sv~~I~~~L~~~~~~~~~~wa~~~~~~l~~~SP~Sl~vt~~~~~~~ 324 (407)
T PLN02851 245 VIEDSLAQYGDLVYPDKSSVLHKIETIDKCFGHDTVEEIIEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREG 324 (407)
T ss_pred HHHHHHHHhccccCCCcccHHHHHHHHHHHhCCCCHHHHHHHHHhcccccchHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 011111233455666777777777776
Q ss_pred hhhcHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHc
Q psy5402 163 MLSMLHEANKRECKRLEERW---ESEEFMNAITAFFN 196 (198)
Q Consensus 163 ~~~~~~~~~~~e~~~~~~~~---~~~~~~e~~~af~~ 196 (198)
...++.+.++.|......++ .++||.||+++-+-
T Consensus 325 ~~~sl~e~l~~E~~l~~~~~~~~~~~DF~EGVRA~LI 361 (407)
T PLN02851 325 RFQTLDQCLAREYRISLCGVSKWVSGDFCEGVRARLV 361 (407)
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhc
Confidence 66788999999988888776 48999999999764
No 86
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.97 E-value=1.7e-31 Score=211.34 Aligned_cols=166 Identities=23% Similarity=0.319 Sum_probs=146.4
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhc
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG 99 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG 99 (198)
-++-+.|+.+||||||.|+|+|+|||-.|-+.||+.||+++ |.|+....++|-+-++.++..|+|.||
T Consensus 106 LdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n------------A~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 106 LDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN------------AIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred hhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc------------chhcCCCCCcccccCcccHHHHHHHhh
Confidence 35556788999999999999999999999999999999999 999999999998876666667999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHH
Q psy5402 100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179 (198)
Q Consensus 100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~ 179 (198)
..+|+++.+.+|.++|+||+++|+||.|||.++|++++.+|++++...||.+++..|..+|...+ .+.-..+..-+...
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad~D-GlaG~q~~ag~at~ 252 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNADCD-GLAGLQELAGNATL 252 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCCCc-hhhHHHHhcccceE
Confidence 99999999999999999999999999999999999999999999999999999999999998744 23222233333333
Q ss_pred HHhCCHHHHHHHHHHHccC
Q psy5402 180 ERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 180 ~~~~~~~~~e~~~af~~kr 198 (198)
..+.+++.+||..+|+|||
T Consensus 253 L~YmTdEa~EGr~AF~eKR 271 (282)
T COG0447 253 LYYMTDEAQEGRDAFLEKR 271 (282)
T ss_pred EEEechhhhhhHHHHhhcc
Confidence 4567999999999999998
No 87
>KOG1682|consensus
Probab=99.97 E-value=2.3e-30 Score=203.40 Aligned_cols=185 Identities=23% Similarity=0.303 Sum_probs=168.9
Q ss_pred CCCCccCchhhhhhh--------HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccce
Q psy5402 1 MTNNPTDLINEDTDT--------SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ 72 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~--------~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~ 72 (198)
.||+|.||+|+-++. +....+++..|+++|+||||-|||.|.++||.|...||+++|+.+
T Consensus 88 ifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~------------ 155 (287)
T KOG1682|consen 88 IFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN------------ 155 (287)
T ss_pred cccccccHHHhhcCccchHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC------------
Confidence 489999999996654 334457789999999999999999999999999999999999999
Q ss_pred EEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCHHHH
Q psy5402 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSM 152 (198)
Q Consensus 73 a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~~a~ 152 (198)
++|..|...+|++...-+. -+.|.+++..+.+|++||.+++++||+..|||+++||+++++.++.++++.|...++..+
T Consensus 156 SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~ 234 (287)
T KOG1682|consen 156 SKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVI 234 (287)
T ss_pred ccccCCCCceeeEecCcch-hHhhhcchhHHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999998765443 488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 153 IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 153 ~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
...|+........+-.++.....+.+.+.+.-.|.+||+.+|++||
T Consensus 235 slgk~f~y~q~~ms~~ea~~~~~~~m~~n~ql~d~kegiasf~~kr 280 (287)
T KOG1682|consen 235 SLGKEFYYKQLAMSQAEAFSAAQEKMCENFQLGDTKEGIASFFEKR 280 (287)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccchHHHHHHHhccC
Confidence 9999998887777777788888888999999999999999999997
No 88
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.96 E-value=1.1e-29 Score=201.77 Aligned_cols=131 Identities=34% Similarity=0.470 Sum_probs=121.5
Q ss_pred CCCCccCchhhhhh---------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccc
Q psy5402 1 MTNNPTDLINEDTD---------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL 71 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~---------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~ 71 (198)
.||+|.|++++... ....+++++.++..+||||||+|||+|+|+|+.++++||+||++++
T Consensus 55 ~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~----------- 123 (195)
T cd06558 55 AFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED----------- 123 (195)
T ss_pred ceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-----------
Confidence 48999999987432 3346678899999999999999999999999999999999999999
Q ss_pred eEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143 (198)
Q Consensus 72 ~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~ 143 (198)
++|++||+++|++|+.|.++++++++|...+++++++|+.++++||+++||||+++|.+++.+++.+++++
T Consensus 124 -~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 124 -AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred -CEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888875
No 89
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.96 E-value=1.6e-29 Score=228.04 Aligned_cols=138 Identities=14% Similarity=0.125 Sum_probs=121.5
Q ss_pred CCCCccCchhhhhhh-------HH----HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCc
Q psy5402 1 MTNNPTDLINEDTDT-------SI----TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPV 68 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~-------~~----~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~ 68 (198)
.||+|.|++++.... .. ....+...+.++||||||+|||+|+|||++|+++||+||++++ +
T Consensus 79 ~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~------- 151 (546)
T TIGR03222 79 VFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRS------- 151 (546)
T ss_pred CCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCC-------
Confidence 389999999874311 01 1123456678899999999999999999999999999999985 2
Q ss_pred ccceEEEeccccc-ccccCCchhhhHHH--HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402 69 FVLQATFHTPFTL-RGMTPEGCSSVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145 (198)
Q Consensus 69 ~~~~a~~~~pe~~-~Gi~p~~g~~~~l~--~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la 145 (198)
++|++||++ +|++|++|++.++. +.+|..+|++++++|++++|+||+++||||++||++++.+++.+++++|+
T Consensus 152 ----a~f~~pEv~~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la 227 (546)
T TIGR03222 152 ----SSVSLPEVPLLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELA 227 (546)
T ss_pred ----cEEEccchhccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHH
Confidence 699999997 99999999988887 68999999999999999999999999999999999999999999999999
Q ss_pred cCCH
Q psy5402 146 KLPP 149 (198)
Q Consensus 146 ~~~~ 149 (198)
+.||
T Consensus 228 ~~~p 231 (546)
T TIGR03222 228 AQSD 231 (546)
T ss_pred hCCC
Confidence 8887
No 90
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.96 E-value=4.5e-29 Score=225.66 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=121.7
Q ss_pred CCCCccCchhhhhhhH-----------HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC-CcccCCCc
Q psy5402 1 MTNNPTDLINEDTDTS-----------ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT-AILLNHPV 68 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~-----------~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~-~~~~~~~~ 68 (198)
.||+|.|++++..... .....+...+.++||||||+|||+|+|||++|+++|||||++++ +
T Consensus 83 ~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~------- 155 (550)
T PRK08184 83 VFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRS------- 155 (550)
T ss_pred CCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCC-------
Confidence 4899999998643210 01122455778899999999999999999999999999999975 2
Q ss_pred ccceEEEeccccc-ccccCCchhhhHHH--HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHh
Q psy5402 69 FVLQATFHTPFTL-RGMTPEGCSSVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145 (198)
Q Consensus 69 ~~~~a~~~~pe~~-~Gi~p~~g~~~~l~--~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la 145 (198)
++|++||++ +|++|++|++++++ +++|..++++++++|+.++++||+++||||++||++++.+++.+++++|+
T Consensus 156 ----a~fg~pEv~~~Gl~P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia 231 (550)
T PRK08184 156 ----SAVSLPEVPLLGVLPGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELA 231 (550)
T ss_pred ----cEEEccchhccccCCCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHH
Confidence 789999997 99999999988888 77999999999999999999999999999999999999999999999999
Q ss_pred cCCHH
Q psy5402 146 KLPPQ 150 (198)
Q Consensus 146 ~~~~~ 150 (198)
..||.
T Consensus 232 ~~~~~ 236 (550)
T PRK08184 232 AASDR 236 (550)
T ss_pred hCCCC
Confidence 88864
No 91
>KOG1684|consensus
Probab=99.91 E-value=3.4e-24 Score=180.68 Aligned_cols=182 Identities=18% Similarity=0.198 Sum_probs=159.9
Q ss_pred CCCccCchhhhhh-----------hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCccc
Q psy5402 2 TNNPTDLINEDTD-----------TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFV 70 (198)
Q Consensus 2 ~s~G~Dl~~~~~~-----------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~ 70 (198)
||+|+|++..... .+...+.+...|.++.||.||.+||..+|||+.|++..-||||+++
T Consensus 96 FCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer---------- 165 (401)
T KOG1684|consen 96 FCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER---------- 165 (401)
T ss_pred eecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc----------
Confidence 8999998754322 2334456778899999999999999999999999999999999999
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHH---------------
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER--------------- 135 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~--------------- 135 (198)
+.|.+||+.+|++|+.|+++.++|+.| ....++.+||+++++.+|+..||.++-||.+.+..
T Consensus 166 --T~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~ 242 (401)
T KOG1684|consen 166 --TVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLLKNLNDDPQS 242 (401)
T ss_pred --ceecccccccccccCccceeehhhCcc-HHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHhhhcCCCcHH
Confidence 999999999999999999999999877 78889999999999999999999999888755432
Q ss_pred ------------------------------------------------------HHHHHHHHHhcCCHHHHHHHHHHhhc
Q psy5402 136 ------------------------------------------------------DLWPRIHAWAKLPPQSMIFAKQLVRV 161 (198)
Q Consensus 136 ------------------------------------------------------~a~~~a~~la~~~~~a~~~~K~~l~~ 161 (198)
.|.+.+++|.+.+|.++..+-+.++.
T Consensus 243 ~I~~~l~~y~~~~~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k~SPtSLkvT~r~i~e 322 (401)
T KOG1684|consen 243 VINETLEKYASPAKDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKKMSPTSLKVTLRQIRE 322 (401)
T ss_pred HHHHHHHHhcccCCCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcCCchHHHHHHHHHh
Confidence 34455667778899999999999999
Q ss_pred hhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402 162 PMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196 (198)
Q Consensus 162 ~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~ 196 (198)
....++++.+..|...-.....++||.||++|-+-
T Consensus 323 gs~~tl~~~l~~Eyr~s~~~~~~~DF~EGvRA~LI 357 (401)
T KOG1684|consen 323 GSKQTLDQCLTMEYRLSLRMLMRGDFCEGVRAVLI 357 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccchhhhhhheee
Confidence 98899999999999998999999999999999764
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.84 E-value=1.2e-20 Score=149.93 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc--------
Q psy5402 20 QKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG-------- 88 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~-------- 88 (198)
.+++.+|..+||||||+|| |+|+|||+.++++||+++++++ ++|+.++...+..+..
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~------------a~~g~~~~~~~~~~~~~~~~~~~~ 115 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG------------TNIGAAHPVAIGGGGGSDPVMEKK 115 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC------------CcEEeccccccCCCCcchHHHHHH
Confidence 4567788899999999999 9999999999999999999999 9999999985544432
Q ss_pred ------hhhhHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCch-hHHHH
Q psy5402 89 ------CSSVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTE-EIERD 136 (198)
Q Consensus 89 ------g~~~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-~l~~~ 136 (198)
+....+++..|. ..+++++++|+.|+++||+++||||++++++ ++.+.
T Consensus 116 ~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 116 ILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 234568888887 6899999999999999999999999999876 55543
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.79 E-value=5e-19 Score=139.37 Aligned_cols=118 Identities=13% Similarity=0.033 Sum_probs=95.9
Q ss_pred CCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccccc
Q psy5402 2 TNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTL 81 (198)
Q Consensus 2 ~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~ 81 (198)
+|.|+|+.+. ..+.+++.++..++|||||++||.|.|+|+.|+++||+++++++ ++|+++.+.
T Consensus 48 ~~~gg~~~~~-----~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~i~a~~~------------a~~~~~G~~ 110 (177)
T cd07014 48 NSPGGSVTAS-----EVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANYIVANPS------------TLVGSIGIF 110 (177)
T ss_pred eCCCcCHHHH-----HHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCEEEECCC------------CeEEEechH
Confidence 5778887653 24566788888999999999999999999999999999999999 999999887
Q ss_pred ccccCCchhhh--------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402 82 RGMTPEGCSSV--------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136 (198)
Q Consensus 82 ~Gi~p~~g~~~--------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 136 (198)
.+..+...... .+++..| ....++++..|..++|++|++.||||++.+.+++.+.
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~~~~ 175 (177)
T cd07014 111 GVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAK 175 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHHHHH
Confidence 76443322222 3444445 7778899999999999999999999999998877653
No 94
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.63 E-value=1.8e-15 Score=117.17 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchh---------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS--------- 90 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~--------- 90 (198)
..+++.|..+|||||+.++|.|.|+|+.++++||+|+++++ ++|+++....+..+....
T Consensus 48 ~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~d~~~~~~~------------a~~~~~~~~~~~~g~~~~~~~~~~~l~ 115 (160)
T cd07016 48 LAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDEVEMPPN------------AMLMIHNPSTGAAGNADDLRKAADLLD 115 (160)
T ss_pred HHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcCCeEEECCC------------cEEEEECCccccCcCHHHHHHHHHHHH
Confidence 45788888999999999999999999999999999999999 999998776665443221
Q ss_pred ------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402 91 ------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV 127 (198)
Q Consensus 91 ------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v 127 (198)
...+.+..| .....+++..+..++++||+++||||+|
T Consensus 116 ~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 116 KIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 223667778 6777788888888999999999999986
No 95
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.52 E-value=1.8e-14 Score=116.58 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=48.6
Q ss_pred CCCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61 (198)
Q Consensus 1 ~~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~ 61 (198)
++|.|+|+.+.. .+.+.+..+..++|||||+++|+|.|+|+.|+++||+++++++.
T Consensus 46 ~~s~Gg~~~~~~-----~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~a 101 (211)
T cd07019 46 VNSPGGSVTASE-----VIRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPST 101 (211)
T ss_pred EcCCCcCHHHHH-----HHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCCC
Confidence 378999987752 34566788889999999999999999999999999999999993
No 96
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.52 E-value=2e-14 Score=131.71 Aligned_cols=127 Identities=17% Similarity=0.144 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc------ccccccCCchh
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF------TLRGMTPEGCS 90 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe------~~~Gi~p~~g~ 90 (198)
+.+.+.+.++...+|||||.++|.|.+||+.++++||.++|+++++.|++.| |+.+. .++|+.++...
T Consensus 365 e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv------~~~~~~~~~~l~klGi~~~~~~ 438 (584)
T TIGR00705 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGV------FSVLPTFENSLDRIGVHVDGVS 438 (584)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEE------EEEccCHHHHHHhcCCceEEEe
Confidence 4556667777788999999999999999999999999999999977777753 44442 68999987666
Q ss_pred hhHHHH----------------------------HhcHHH-----HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH
Q psy5402 91 SVLFPR----------------------------IFGNSV-----ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137 (198)
Q Consensus 91 ~~~l~~----------------------------~vG~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a 137 (198)
+..++. .|+..+ +.+.+.+|+.++++||+++||||++- .+ +++
T Consensus 439 t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~A 514 (584)
T TIGR00705 439 THELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEA 514 (584)
T ss_pred ccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHH
Confidence 555443 666666 77888999999999999999999993 44 667
Q ss_pred HHHHHHHhcC-CHHHHH
Q psy5402 138 WPRIHAWAKL-PPQSMI 153 (198)
Q Consensus 138 ~~~a~~la~~-~~~a~~ 153 (198)
.+.+.+++.. ++.++.
T Consensus 515 i~~a~~la~~~~~~~v~ 531 (584)
T TIGR00705 515 VAKAAKLAHCREQWSVE 531 (584)
T ss_pred HHHHHHHcCCCCCceEE
Confidence 8888888888 554443
No 97
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.43 E-value=7.4e-13 Score=102.35 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCch---------
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC--------- 89 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g--------- 89 (198)
..++...|..++||||+.++|.|.++|+.|+++||.|++.++ +.|++.....+.....+
T Consensus 46 ~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d~~~~~~~------------a~~~~~g~~~~~~~~~~~~~~~~~~~ 113 (161)
T cd00394 46 GMNIVDALQASRKPVIAYVGGQAASAGYYIATAANKIVMAPG------------TRVGSHGPIGGYGGNGNPTAQEADQR 113 (161)
T ss_pred HHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCCEEEECCC------------CEEEEeeeEEecCCCCChHHHHHHHH
Confidence 456777888899999999999999999999999999999999 99999888765543220
Q ss_pred -hh---hHHHHHh------cHHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402 90 -SS---VLFPRIF------GNSVASELLYTGRKLNAQEALQYGFVSGV 127 (198)
Q Consensus 90 -~~---~~l~~~v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v 127 (198)
.- ..+...+ ......+.+..+..++++||+++||||+|
T Consensus 114 ~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 114 IILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 00 1111112 22345677888999999999999999985
No 98
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.29 E-value=1.7e-11 Score=99.31 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=33.7
Q ss_pred HHHHHhcC--CCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402 22 YVAAFIDY--PKPLIAIVNGPAIGISATTLALCDIVFASDT 60 (198)
Q Consensus 22 ~~~~i~~~--~kp~IA~v~G~a~GgG~~lalacD~~ia~~~ 60 (198)
+...+..+ +|||||+++|.|.|+|+.++++||+++++++
T Consensus 63 l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~ 103 (214)
T cd07022 63 LADAIRAARAGKPIVAFVNGLAASAAYWIASAADRIVVTPT 103 (214)
T ss_pred HHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCEEEEcCC
Confidence 33444444 5999999999999999999999999999999
No 99
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.29 E-value=9.4e-12 Score=100.31 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=46.7
Q ss_pred CCCccCchhhhhhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402 2 TNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60 (198)
Q Consensus 2 ~s~G~Dl~~~~~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~ 60 (198)
.|.|+|+... ..+.+.+..+..++|||||+++|.|.|+|+.++++||+++++++
T Consensus 43 ~s~Gg~~~~~-----~~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~ 96 (208)
T cd07023 43 NSPGGSVVAS-----EEIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT 96 (208)
T ss_pred ECCCCCHHHH-----HHHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC
Confidence 4778887652 34566778888899999999999999999999999999999998
No 100
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.29 E-value=1.6e-11 Score=96.87 Aligned_cols=105 Identities=23% Similarity=0.289 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc----hhhh
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG----CSSV 92 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~----g~~~ 92 (198)
.....++..|..+|+|||+.|+|.|.++|+.++++||+++++++ +.|+.+..-.+-..+. -...
T Consensus 45 ~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~------------a~iG~~~~v~~~~~~~~~~K~~~~ 112 (178)
T cd07021 45 DSALEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG------------ATIGAAEPIPGDGNGAADEKVQSY 112 (178)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC------------CeEecCeeEcCCCccchhHHHHHH
Confidence 34667889999999999999999999999999999999999999 9999885442211000 0011
Q ss_pred H------HHHHhc--HHHHHHHHhcC-------------CCCCHHHHHhcCCcccccCc-hhH
Q psy5402 93 L------FPRIFG--NSVASELLYTG-------------RKLNAQEALQYGFVSGVFTT-EEI 133 (198)
Q Consensus 93 ~------l~~~vG--~~~a~~lll~g-------------~~~~a~eA~~~Glv~~v~~~-~~l 133 (198)
. +.+.-| ...+..|+-.. -.++++||+++|++|.+.++ +++
T Consensus 113 ~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~l 175 (178)
T cd07021 113 WRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDEL 175 (178)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHH
Confidence 1 111223 33444555443 26999999999999999874 444
No 101
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.28 E-value=4.5e-11 Score=96.40 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCC--CcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------
Q psy5402 19 LQKYVAAFIDYP--KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE--------- 87 (198)
Q Consensus 19 ~~~~~~~i~~~~--kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~--------- 87 (198)
..++...|.+++ |||||.++|.|.|+|+.|+++||.++++++..-+...+....-.|.-..-++|+-+.
T Consensus 48 ~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 48 SEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 456677777777 999999999999999999999999999999322222210000000000122333210
Q ss_pred c---------hhhhHHHHH-----------------hcHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHH
Q psy5402 88 G---------CSSVLFPRI-----------------FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139 (198)
Q Consensus 88 ~---------g~~~~l~~~-----------------vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~ 139 (198)
. ..-..+... +..... +-++.|+.|++++|++.||||++...+++.+.+.+
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~-~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDV-KKFADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 0 000011111 111122 24578999999999999999999877776655443
No 102
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=98.97 E-value=6.9e-09 Score=81.38 Aligned_cols=100 Identities=16% Similarity=0.204 Sum_probs=75.9
Q ss_pred HHHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC----c-h-
Q psy5402 19 LQKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE----G-C- 89 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~----~-g- 89 (198)
...+++.|...++||++.|+ |.|..+|..++++||.+++.++ +.++......|..+. . -
T Consensus 47 ~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~------------s~iG~~~pi~~~g~~~~~~~~~~ 114 (172)
T cd07015 47 AGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG------------TSIGACRPILGYSQNGSIIEAPP 114 (172)
T ss_pred HHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC------------CEEEEccccccCCCCCccccchH
Confidence 45677888889999999999 9999999999999999999999 888877765332110 0 0
Q ss_pred --hhhH------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 90 --SSVL------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 90 --~~~~------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
.... +.+.-| ...+..++-....++++||+++|++|.++++
T Consensus 115 ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~ 165 (172)
T cd07015 115 KITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 165 (172)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCC
Confidence 0111 122223 3556678888888999999999999999875
No 103
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.88 E-value=3.7e-09 Score=86.11 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE--------- 87 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~--------- 87 (198)
+.+.+.+..+...+|||||.++| |.+||+.++++||.+++.++.+-+.+.++.....|.-..-++|+-+.
T Consensus 65 ~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~ 143 (222)
T cd07018 65 EELRQALERFRASGKPVIAYADG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKS 143 (222)
T ss_pred HHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEecccc
Confidence 34566677777789999999998 88999999999999999999322222221111111000111222221
Q ss_pred chhhh-----------HHHH-----------Hh------cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHH
Q psy5402 88 GCSSV-----------LFPR-----------IF------GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136 (198)
Q Consensus 88 ~g~~~-----------~l~~-----------~v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~ 136 (198)
.+..+ .+.. .| .... .+-+..|+.+++++|++.||||++...+++.+.
T Consensus 144 ~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 144 AVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDA-LEALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred ccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-HHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 01000 0011 11 1112 234456999999999999999999877776554
No 104
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=98.83 E-value=3.3e-08 Score=76.86 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV---- 92 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~---- 92 (198)
-..+++.|...++|+++.+.|.|.++|..++++|| .|++.++ +++.+....-+......-..
T Consensus 47 ~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~~~g~r~~~p~------------a~~~ih~~~~~~~g~~~d~~~~~~ 114 (162)
T cd07013 47 GMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAGAKGKRFILPN------------AMMMIHQPWGGTLGDATDMRIYAD 114 (162)
T ss_pred HHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcCCCCcEEEecC------------EEEEEccCcccccCCHHHHHHHHH
Confidence 44577788889999999999999999999999999 5888888 77765443222111100000
Q ss_pred -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402 93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV 127 (198)
Q Consensus 93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v 127 (198)
.+.+.-| .....+++-.+..++|+||+++||||++
T Consensus 115 ~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 115 LLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 1111112 3333566667777899999999999985
No 105
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.78 E-value=3.1e-08 Score=79.59 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchh-------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS------- 90 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~------- 90 (198)
..++..|...+.|+++.++|.|.+.|..++++++ .|++.++ +++.+....-|......-
T Consensus 79 ~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~------------s~imih~p~~~~~G~a~di~~~a~~ 146 (200)
T PRK00277 79 LAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPN------------SRIMIHQPLGGFQGQATDIEIHARE 146 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCC------------ceEEeccCcccccCChhHHHHHHHH
Confidence 3466777888899999999999999999988753 4666666 666554433221110000
Q ss_pred --------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 91 --------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 91 --------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
...+....| .....+++-.+..++|+||+++||||+|++.
T Consensus 147 l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 147 ILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeec
Confidence 011223333 3444566667788999999999999999864
No 106
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.77 E-value=1.5e-07 Score=78.14 Aligned_cols=106 Identities=25% Similarity=0.318 Sum_probs=72.8
Q ss_pred CCccCchhhh--hhhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402 3 NNPTDLINED--TDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT 80 (198)
Q Consensus 3 s~G~Dl~~~~--~~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~ 80 (198)
|.|..+.... ......+.+.+..+...++|+|+.|-|.|.|||......||++++.++ +.++.
T Consensus 107 tpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~------------a~~~v--- 171 (256)
T PRK12319 107 TAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVWMLEN------------TMYAV--- 171 (256)
T ss_pred CCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCCcCcHHHHHhhcCCEEEEecC------------ceEEE---
Confidence 4555543322 223456777788888999999999999999999888889999999999 76643
Q ss_pred cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
+.|.++....+...--...+.+. ..+++.++.+.|+||+|+|+
T Consensus 172 ---~~pe~~a~il~~~~~~a~~aa~~----~~~~a~~l~~~g~iD~ii~e 214 (256)
T PRK12319 172 ---LSPEGFASILWKDGSRATEAAEL----MKITAGELLEMGVVDKVIPE 214 (256)
T ss_pred ---cCHHHHHHHHhcCcccHHHHHHH----cCCCHHHHHHCCCCcEecCC
Confidence 22333333333221111222223 27799999999999999974
No 107
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.65 E-value=8.1e-07 Score=75.75 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=73.8
Q ss_pred CCccCchhhhh--hhHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402 3 NNPTDLINEDT--DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT 80 (198)
Q Consensus 3 s~G~Dl~~~~~--~~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~ 80 (198)
+.|.++..... .....+.+.+..+....+|+|+.|-|.|.|||......||++++.++ +.++.
T Consensus 163 TpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~------------a~~sV--- 227 (322)
T CHL00198 163 TPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEY------------AVYTV--- 227 (322)
T ss_pred CCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCC------------eEEEe---
Confidence 45655533222 22345667777788999999999999999888765566999999999 77653
Q ss_pred cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
+.|.++++.++.. ..+|.+ ....-.++|++.+++|+||+|+|.
T Consensus 228 ---isPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~giiD~ii~E 270 (322)
T CHL00198 228 ---ATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGIIDEIIPE 270 (322)
T ss_pred ---cCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCCeEeccC
Confidence 2344444443332 333333 334568999999999999999974
No 108
>PRK10949 protease 4; Provisional
Probab=98.65 E-value=3.9e-08 Score=90.88 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh-----
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS----- 91 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~----- 91 (198)
+.+.+.+.++....|||||.+.|.|.-||+.++++||.++|.+.++.|++.|+-..-.+.-.--++|+......+
T Consensus 383 e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~ 462 (618)
T PRK10949 383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLAD 462 (618)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCC
Confidence 345566666677789999999999999999999999999999998888887621111111111234443321111
Q ss_pred ------------hHHHHH-----------h------cHHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHH
Q psy5402 92 ------------VLFPRI-----------F------GNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 142 (198)
Q Consensus 92 ------------~~l~~~-----------v------G~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~ 142 (198)
..+... | .... .+-+..|+.+++++|++.||||++-.-++.. +.++
T Consensus 463 ~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~-v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai----~~a~ 537 (618)
T PRK10949 463 VSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQ-IDKIAQGHVWTGQDAKANGLVDSLGDFDDAV----AKAA 537 (618)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHH-HHHHhcCCcccHHHHHHcCCCccCCCHHHHH----HHHH
Confidence 011111 1 1111 2346799999999999999999996544433 3444
Q ss_pred HHhcC
Q psy5402 143 AWAKL 147 (198)
Q Consensus 143 ~la~~ 147 (198)
+++..
T Consensus 538 ~~a~~ 542 (618)
T PRK10949 538 ELAKL 542 (618)
T ss_pred HHcCC
Confidence 45544
No 109
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.61 E-value=1.3e-07 Score=81.12 Aligned_cols=116 Identities=21% Similarity=0.228 Sum_probs=74.9
Q ss_pred HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCC---------ch----
Q psy5402 23 VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE---------GC---- 89 (198)
Q Consensus 23 ~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~---------~g---- 89 (198)
+.++....||+++.+++.|.-||+.++++||-+++.+..+.|++.|+-..-.|.--.-++|+-+. .+
T Consensus 147 l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~ 226 (330)
T PRK11778 147 LQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFG 226 (330)
T ss_pred HHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCC
Confidence 55677788999999999999999999999999999999887777752211111100012222110 00
Q ss_pred -hh---------------hHHHHHhcHHH---HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHH
Q psy5402 90 -SS---------------VLFPRIFGNSV---ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138 (198)
Q Consensus 90 -~~---------------~~l~~~vG~~~---a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~ 138 (198)
.+ ..|...|-..+ ..+-+.+|+.+++++|++.||||++-..+++...+.
T Consensus 227 ~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~ 294 (330)
T PRK11778 227 ENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELM 294 (330)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHH
Confidence 00 01111121111 134567899999999999999999988777654333
No 110
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.59 E-value=3.2e-07 Score=74.07 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccc-cccCCchhh----
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLR-GMTPEGCSS---- 91 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~-Gi~p~~g~~---- 91 (198)
-..++..|..++.||++.+.|.|.+.|..++++|| .|++.++ ++|.+..... |.. .|..
T Consensus 82 g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~------------s~imiH~p~~~~~~--~G~a~d~~ 147 (207)
T PRK12553 82 GDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPN------------ARILIHQPSLGGGI--RGQASDLE 147 (207)
T ss_pred HHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCC------------chhhhcCccccCCC--ccCHHHHH
Confidence 34567888888999999999999999999999999 5899999 8888776543 211 1111
Q ss_pred --------------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 92 --------------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 92 --------------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
..+....| .....+++-.+..++|+||+++||||+|+++
T Consensus 148 ~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~ 202 (207)
T PRK12553 148 IQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITS 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCc
Confidence 11223233 3445567778899999999999999999874
No 111
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.57 E-value=1.4e-06 Score=76.41 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP 95 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~ 95 (198)
...+.+.+..+....+|+|+.|-|.+.+||.....+||++++.++ +.++. +.|.++++.++.
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~------------A~ysV------isPEgaAsILwk 306 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMEN------------AVYYV------ASPEACAAILWK 306 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecC------------CEEEe------cCHHHHHHHHhc
Confidence 345667788889999999999999997777655557999999999 76543 234444444443
Q ss_pred HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
...-...|.+ .-.++|+++++.|+||+|+|.
T Consensus 307 d~~~A~eAAe----alkitA~dL~~~GiID~II~E 337 (431)
T PLN03230 307 SAAAAPKAAE----ALRITAAELVKLGVVDEIVPE 337 (431)
T ss_pred cccchHHHHH----HcCCCHHHHHhCCCCeEeccC
Confidence 3222222333 338999999999999999974
No 112
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.57 E-value=6e-07 Score=71.97 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhh------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS------ 91 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~------ 91 (198)
..++..|...+.||++.+.|.|.+.|..++++||- |++.++ ++|.+....-++.....-.
T Consensus 71 ~aI~d~i~~~~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~------------s~imiHqP~~~~~G~a~di~~~a~~ 138 (197)
T PRK14512 71 FAIFNMIRFVKPKVFTIGVGLVASAAALIFLAAKKESRFSLPN------------ARYLLHQPLSGFKGVATDIEIYANE 138 (197)
T ss_pred HHHHHHHHhCCCCEEEEEEeeeHhHHHHHHhcCCcCceeECCC------------CcEEEEcCccccccCHHHHHHHHHH
Confidence 45777888899999999999999999999999986 888888 7775554432221111100
Q ss_pred ---------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc-hhHH
Q psy5402 92 ---------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIE 134 (198)
Q Consensus 92 ---------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~ 134 (198)
..+...-| .....+++-....++|+||+++||+|+|++. +++.
T Consensus 139 l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~~~l~ 193 (197)
T PRK14512 139 LNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETRLELE 193 (197)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCcHHhH
Confidence 00111122 2334455555677999999999999999975 4443
No 113
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.56 E-value=1.6e-06 Score=73.96 Aligned_cols=93 Identities=20% Similarity=0.355 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP 95 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~ 95 (198)
...+.+.+..+....+|+|+.|-|.|.|||......||++++.++ +.++. +.|.++.+..+.
T Consensus 175 ~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~------------a~~sV------isPEg~a~Il~k 236 (316)
T TIGR00513 175 SEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEY------------STYSV------ISPEGCAAILWK 236 (316)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecC------------ceEEe------cCHHHHHHHhcc
Confidence 445667788888999999999999998888765557999999999 76643 223444443332
Q ss_pred HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
. ..++.+..- -..+++.++.+.|+||+|+|.
T Consensus 237 d---~~~a~~aae-~~~~ta~~l~~~G~iD~II~e 267 (316)
T TIGR00513 237 D---ASKAPKAAE-AMKITAPDLKELGLIDSIIPE 267 (316)
T ss_pred c---hhhHHHHHH-HccCCHHHHHHCCCCeEeccC
Confidence 2 122222222 256789999999999999974
No 114
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.56 E-value=3.2e-07 Score=71.85 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchh-------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS------- 90 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~------- 90 (198)
..+++.|...+.|+++.+.|.|.++|..+++++| -|++.++ ++|.+.+...+......-
T Consensus 57 ~~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~------------a~~~~h~~~~~~~g~~~~~~~~~~~ 124 (171)
T cd07017 57 LAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN------------SRIMIHQPLGGAGGQASDIEIQAKE 124 (171)
T ss_pred HHHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc------------hHHHHcCCCccCCCCHHHHHHHHHH
Confidence 3566777788999999999999999999999999 7999999 888888766554332110
Q ss_pred --------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccc
Q psy5402 91 --------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV 127 (198)
Q Consensus 91 --------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v 127 (198)
...+....| .....+++-.+..++++||+++|+||+|
T Consensus 125 l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 125 ILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 001111122 2344566678888999999999999986
No 115
>KOG1683|consensus
Probab=98.55 E-value=9.5e-09 Score=88.07 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=130.0
Q ss_pred CCCccCchhhhhh-------hHHHHHHHHHHHhcCCCcEEEEEcCccchHH--HHHhhhcCEEEee--cCCcccCCCccc
Q psy5402 2 TNNPTDLINEDTD-------TSITLQKYVAAFIDYPKPLIAIVNGPAIGIS--ATTLALCDIVFAS--DTAILLNHPVFV 70 (198)
Q Consensus 2 ~s~G~Dl~~~~~~-------~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG--~~lalacD~~ia~--~~~~~~~~~~~~ 70 (198)
+|+|.|+.+.... ....+++++.+...++.|+.+++||++-.|+ +.++-+|+|++.. ..
T Consensus 113 isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~---------- 182 (380)
T KOG1683|consen 113 ISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPP---------- 182 (380)
T ss_pred HhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccH----------
Confidence 5677777776433 2346788999999999999999999999999 8899999999988 44
Q ss_pred ceEEEecccccccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccC--chhHHHHHHHHHHHHhcCC
Q psy5402 71 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT--TEEIERDLWPRIHAWAKLP 148 (198)
Q Consensus 71 ~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~--~~~l~~~a~~~a~~la~~~ 148 (198)
...+..+...++..+.+-.-.+...+|.+.+-..+-.+.-|+..||++-|+++++.| .+++.+..+.-........
T Consensus 183 --y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~kg~y 260 (380)
T KOG1683|consen 183 --YTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGKGIY 260 (380)
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccCccc
Confidence 566888999985444444445666678888888889999999999999999999999 4566665555555555444
Q ss_pred HHHHHHHHHHhhchhhhcHHHH------HHHHHHHHHHHhCCHHHHHHHHHHHcc
Q psy5402 149 PQSMIFAKQLVRVPMLSMLHEA------NKRECKRLEERWESEEFMNAITAFFNR 197 (198)
Q Consensus 149 ~~a~~~~K~~l~~~~~~~~~~~------~~~e~~~~~~~~~~~~~~e~~~af~~k 197 (198)
+-+-..+|+..+..+...+.+. .....+.+.....+|-++|++..+.|.
T Consensus 261 ~y~~~l~k~~~~~~~~~~~r~l~~~~~~r~~~~ed~v~~~~~p~VnEal~~l~EG 315 (380)
T KOG1683|consen 261 PYARGLTKKMKRDEMEALLRRLSLTPNPRVADDEDFVEFLLSPFVNEALRCLLEG 315 (380)
T ss_pred ccccccccCCChhhHHHHHHHhccCCCcccCCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444444433331111111110 112234556677889999999988873
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.51 E-value=3.6e-06 Score=71.84 Aligned_cols=93 Identities=24% Similarity=0.394 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP 95 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~ 95 (198)
...+.+.+.++....+|+|+.|-|.|.|||......||++++.++ +.++. +.|.++.+..+.
T Consensus 175 ~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~------------A~~sv------isPEg~a~Il~~ 236 (319)
T PRK05724 175 SEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEY------------STYSV------ISPEGCASILWK 236 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecC------------ceEee------cCHHHHHHHHhc
Confidence 456777888899999999999999998888766666999999999 76643 223344433332
Q ss_pred HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
. ..++.+..- ...+++.++.+.|+||+|+|.
T Consensus 237 ~---~~~a~~aae-~~~ita~~l~~~g~iD~II~E 267 (319)
T PRK05724 237 D---ASKAPEAAE-AMKITAQDLKELGIIDEIIPE 267 (319)
T ss_pred C---chhHHHHHH-HcCCCHHHHHHCCCceEeccC
Confidence 2 233333333 556899999999999999974
No 117
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.51 E-value=2.1e-06 Score=79.55 Aligned_cols=119 Identities=15% Similarity=0.310 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP 95 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~ 95 (198)
...+.+.+..+....+|+|+.|-|.|.|||......||++++.++ +.++. +.|.++++..+.
T Consensus 266 ~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~------------A~~sV------isPEgaAsILwk 327 (762)
T PLN03229 266 GEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLEN------------AVFYV------ASPEACAAILWK 327 (762)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecC------------CeEEe------cCHHHHHHHHhc
Confidence 456677788888999999999999999888887788999999999 76543 234444443332
Q ss_pred HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCch-------------hHHHHHHHHHHHHhcCCHHHHHHHH
Q psy5402 96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-------------EIERDLWPRIHAWAKLPPQSMIFAK 156 (198)
Q Consensus 96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a~~~a~~la~~~~~a~~~~K 156 (198)
. ..+|.+ ....-.++|++.+++|+||+|+|.. .+.....+....+...++..+...+
T Consensus 328 d---~~~A~e-AAe~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 328 S---AKAAPK-AAEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKHR 397 (762)
T ss_pred C---cccHHH-HHHHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 223332 3455689999999999999999842 1223344555556666666554433
No 118
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.51 E-value=1.4e-07 Score=74.30 Aligned_cols=99 Identities=20% Similarity=0.244 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh----
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV---- 92 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~---- 92 (198)
-..++..|..++.|+++.+.|.|.+.|..++++||. |++.++ +.|.+.+...+.........
T Consensus 63 g~~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~------------s~~m~H~p~~~~~g~~~~l~~~~~ 130 (182)
T PF00574_consen 63 GLAIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN------------SRFMIHQPSTGSGGNASELREQAK 130 (182)
T ss_dssp HHHHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-------------EEEES-CEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec------------CEEEeecceeecccccchhHHHHH
Confidence 456788888999999999999999999999999999 899999 99988887665543111110
Q ss_pred -----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402 93 -----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT 129 (198)
Q Consensus 93 -----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~ 129 (198)
.+....| .....+++-...-++++||+++||||+|+.
T Consensus 131 ~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 131 ELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 1111112 222345555556689999999999999975
No 119
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.43 E-value=1.9e-06 Score=69.22 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccc-cCCchh------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGM-TPEGCS------ 90 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi-~p~~g~------ 90 (198)
..++..+...+.||...+.|.|.+.|..|++++| -|++.++ ++|.+.....|. .....-
T Consensus 78 ~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~------------s~imiHqp~~~~~~G~a~di~~~a~ 145 (200)
T CHL00028 78 LAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPH------------ARVMIHQPASSFYEGQASEFVLEAE 145 (200)
T ss_pred HHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCC------------CeEEEecCccCcCCCCHHHHHHHHH
Confidence 3477788889999999999999999999999999 5999999 888777765542 211110
Q ss_pred ---------hhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 91 ---------SVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 91 ---------~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
...+....| .....+++-....++|+||+++||||+|+++
T Consensus 146 ~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 146 ELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeec
Confidence 011122223 2333455666677999999999999999864
No 120
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.42 E-value=3.2e-08 Score=76.24 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=67.5
Q ss_pred HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccC---------Cch-------
Q psy5402 26 FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP---------EGC------- 89 (198)
Q Consensus 26 i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p---------~~g------- 89 (198)
+....|||||.++|.|..+++.++.+||-+++.+..+-+.+.+......|.-..-++|+-+ ..+
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s 81 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS 81 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence 3567899999999999999999999999999999866555554322222222222233211 110
Q ss_pred --hhhHHHHH-----------hcHHH-----HHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHH
Q psy5402 90 --SSVLFPRI-----------FGNSV-----ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140 (198)
Q Consensus 90 --~~~~l~~~-----------vG~~~-----a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~ 140 (198)
.-..+.+. |-..+ ..+-+..|..|++++|++.||||++-..+++.+.+.+.
T Consensus 82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 01111111 11111 12336799999999999999999998777766655443
No 121
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.36 E-value=3.4e-06 Score=67.26 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcC--EEEeecCCcccCCCcccceEEEecccccccccCCchhh------
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCD--IVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS------ 91 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD--~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~------ 91 (198)
..++..|...+.|+...+.|.|.+.|..+++++| .|++.++ ++|.+.+..-|......-.
T Consensus 74 ~~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~------------s~imiH~p~~~~~G~a~d~~~~a~~ 141 (191)
T TIGR00493 74 LAIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPN------------SRIMIHQPLGGAQGQASDIEIQANE 141 (191)
T ss_pred HHHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCC------------ceEEEecCcccccCCcchhHHHHHH
Confidence 3456677777778888889999999998888766 5999999 8888866543322111111
Q ss_pred ---------hHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402 92 ---------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT 129 (198)
Q Consensus 92 ---------~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~ 129 (198)
..+.+.-| .....+++-.+..++|+||+++||+|+|+.
T Consensus 142 l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 142 ILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 11222333 244456667778899999999999999864
No 122
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.35 E-value=8.5e-06 Score=68.30 Aligned_cols=113 Identities=12% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCccCchhhhhhhHHHHHHHHHHHhcCC--CcEEEEEcCc--cchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecc
Q psy5402 3 NNPTDLINEDTDTSITLQKYVAAFIDYP--KPLIAIVNGP--AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78 (198)
Q Consensus 3 s~G~Dl~~~~~~~~~~~~~~~~~i~~~~--kp~IA~v~G~--a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~p 78 (198)
|.|.-++|-.. ....+.+.+..+..+. .|+|+.+-|+ |+||+..++.+||++|++++ +++++.
T Consensus 108 SgGaRlqEg~~-~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~------------a~i~~a 174 (274)
T TIGR03133 108 TGGVRLQEANA-GLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE------------GRLGLS 174 (274)
T ss_pred CCCcChhhhHH-HHHHHHHHHHHHHHHhCCCCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC------------cEEecc
Confidence 55666654322 2222334444433332 9999999999 89999999999999999998 777652
Q ss_pred cccccccCCchhhhHHHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCch--hHHHHHHH
Q psy5402 79 FTLRGMTPEGCSSVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTE--EIERDLWP 139 (198)
Q Consensus 79 e~~~Gi~p~~g~~~~l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~--~l~~~a~~ 139 (198)
+........|. ....+--+..+.+.+......|++|.+++++ .+...+.+
T Consensus 175 -----------GP~VIe~~~G~e~~~~~d~~l~~~~lGG~~~~~sG~~D~~v~dd~~a~~~~~~~ 228 (274)
T TIGR03133 175 -----------GPEVIEQEAGVEEFDSRDRALVWRTTGGKHRFLSGDADVLVEDDVDAFRAAVIA 228 (274)
T ss_pred -----------CHHHHHHhcCCCccCHHHhcccccccchHhHhhcccceEEeCCHHHHHHHHHHH
Confidence 12223333342 2233444455567777788899999999864 34444433
No 123
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.33 E-value=4.5e-06 Score=67.91 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh-----
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----- 92 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----- 92 (198)
..++..+...+.||...+.|.|.+.|..|++++|. |++.++ +++.+-...-|......-..
T Consensus 102 laIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pn------------a~iMiHqP~~~~~G~a~di~i~a~e 169 (221)
T PRK14514 102 LGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPH------------SRVMIHQPLGGAQGQASDIEITARE 169 (221)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCC------------CEEEeccCCcccCCCcchHHHHHHH
Confidence 34677888899999999999999999999999996 899999 88777665543322111000
Q ss_pred ----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402 93 ----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT 129 (198)
Q Consensus 93 ----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~ 129 (198)
.+....| .....+.+-....++|+||+++||||+|++
T Consensus 170 l~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~ 218 (221)
T PRK14514 170 IQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLI 218 (221)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEee
Confidence 0111223 233345566667799999999999999986
No 124
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.32 E-value=5.1e-06 Score=66.54 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhh-----
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV----- 92 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~----- 92 (198)
..++..|...+.||...+.|.|.+.|..|++++|. |++.++ +++.+....-|......-..
T Consensus 73 ~aIyd~m~~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~------------a~iMIHqP~~~~~G~a~di~~~a~~ 140 (196)
T PRK12551 73 LGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQH------------SRIMIHQPLGGARGQASDIRIQADE 140 (196)
T ss_pred HHHHHHHHhcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCC------------CEEEEecCCcccCCCcchHHHHHHH
Confidence 35677888889999999999999999999999985 888888 88776665433221111000
Q ss_pred ----------HHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 93 ----------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 93 ----------~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
.+....| .....+++-.-..++|+||+++||+|+|++.
T Consensus 141 l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 141 ILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEecc
Confidence 1112223 1233455556667999999999999999875
No 125
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.32 E-value=5.7e-06 Score=66.45 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhhH----
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL---- 93 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~---- 93 (198)
..++..|...+.||...+.|.|.+.|..|++++|- |++.++ +++-+.....|... .....
T Consensus 75 laIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pn------------a~iMIHqp~~~~~G--~a~di~~~a 140 (201)
T PRK14513 75 LAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPN------------SRIMIHQGSAGFRG--NTPDLEVQA 140 (201)
T ss_pred HHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCC------------eEEEEecCCCCCCC--CHHHHHHHH
Confidence 45678888899999999999999999999999996 899999 88877766544321 11111
Q ss_pred -------------HHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402 94 -------------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131 (198)
Q Consensus 94 -------------l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 131 (198)
+.+..| ...-.+++-....++|+||+++||||+|+++.
T Consensus 141 ~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~ 193 (201)
T PRK14513 141 KEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPT 193 (201)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccC
Confidence 112223 23334555566679999999999999998753
No 126
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.32 E-value=5.8e-07 Score=77.04 Aligned_cols=117 Identities=18% Similarity=0.120 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEeccc--cccccc---------C
Q psy5402 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF--TLRGMT---------P 86 (198)
Q Consensus 18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe--~~~Gi~---------p 86 (198)
.+.+.++++..-. ||++.|++.|.-||..++++||.+||+++.|.|++.|+-. .+.+.+ -+.|+- -
T Consensus 117 ~i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~--~~~~~~l~~k~Gv~~~~~~ag~~k 193 (317)
T COG0616 117 LIARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISG--APNFEELLEKLGVEKEVITAGEYK 193 (317)
T ss_pred HHHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCCceeeeceeEEe--cCCHHHHHHhcCCceeeeeccccc
Confidence 4445555555554 9999999999999999999999999999999998886222 111111 112211 0
Q ss_pred Cc-----hh----hh-----------HHHHHhc-----HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHH
Q psy5402 87 EG-----CS----SV-----------LFPRIFG-----NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137 (198)
Q Consensus 87 ~~-----g~----~~-----------~l~~~vG-----~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a 137 (198)
+. .- -. .|...|. ......-+.+|+.+++++|++.||||++-..++....+
T Consensus 194 ~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~ 269 (317)
T COG0616 194 DILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDA 269 (317)
T ss_pred cccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHH
Confidence 00 00 00 1111111 11113577899999999999999999997654443333
No 127
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.10 E-value=2.7e-05 Score=66.04 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=62.4
Q ss_pred CCccCchhhhhhhHHHHHHHHHH---HhcCCCcEEEEEcCc--cchHHHHHhhhcCEEEeecCCcccCCCcccceEEEec
Q psy5402 3 NNPTDLINEDTDTSITLQKYVAA---FIDYPKPLIAIVNGP--AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77 (198)
Q Consensus 3 s~G~Dl~~~~~~~~~~~~~~~~~---i~~~~kp~IA~v~G~--a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~ 77 (198)
|.|.-++|-. .....+.+++.. +... +|+|+.+-|+ |+||+...+.+||++|++++ +++++
T Consensus 117 SGGaRlqEg~-~~L~~~a~i~~~~~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~------------a~igl 182 (301)
T PRK07189 117 TGGVRLQEAN-AGLAAIAEIMRAIVDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE------------GRLGL 182 (301)
T ss_pred CCCcCccchH-HHHHHHHHHHHHHHHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC------------cEEec
Confidence 5566665432 122223344443 3334 9999999999 99999999999999999999 77765
Q ss_pred ccccccccCCchhhhHHHHHhc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCch
Q psy5402 78 PFTLRGMTPEGCSSVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131 (198)
Q Consensus 78 pe~~~Gi~p~~g~~~~l~~~vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 131 (198)
.- ........| .-.+.+.-+..+.+.+......|.+|.+++++
T Consensus 183 aG-----------P~VIe~~~G~e~~d~~d~~~vw~~lGG~h~~~sG~~D~~v~dd 227 (301)
T PRK07189 183 SG-----------PEVIEQEAGVEEFDSRDRALVWRTTGGKHRYLSGLADALVDDD 227 (301)
T ss_pred cC-----------HHHHHHhcCCcccCHHHhcccccccCcceeeecccceEEeCCH
Confidence 21 112222222 11122222222223334455689999999864
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.08 E-value=7.2e-05 Score=63.41 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=69.6
Q ss_pred HHHHhcCCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHH
Q psy5402 23 VAAFIDYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNS 101 (198)
Q Consensus 23 ~~~i~~~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~ 101 (198)
+.++.....|.|+.+-|+|+||+.. .++.+|++|+.++ +.+++.-.+ .+...++..
T Consensus 187 ~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~------------A~ig~aGpr-----------vie~~~~e~ 243 (292)
T PRK05654 187 LKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK------------ALIGFAGPR-----------VIEQTVREK 243 (292)
T ss_pred HHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC------------cEEEecCHH-----------HHHhhhhhh
Confidence 3445567899999999999999754 5778999999988 877663221 122222211
Q ss_pred HHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 102 VASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 102 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
. .-+.-+++-+.+.|+||.|+++.++.+...++++.+...++
T Consensus 244 l------pe~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~~ 285 (292)
T PRK05654 244 L------PEGFQRAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQPA 285 (292)
T ss_pred h------hhhhcCHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCCC
Confidence 1 11123577778999999999999999998888887765543
No 129
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.90 E-value=0.00018 Score=60.83 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred HHHHhcCCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHH
Q psy5402 23 VAAFIDYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNS 101 (198)
Q Consensus 23 ~~~i~~~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~ 101 (198)
+.++.....|.|+.+-|+|+||+.. .++.+|++|+.++ +.+++.-.+ .+...+|..
T Consensus 186 ~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~------------A~ig~aGpr-----------Vie~ti~e~ 242 (285)
T TIGR00515 186 LAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPK------------ALIGFAGPR-----------VIEQTVREK 242 (285)
T ss_pred HHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECC------------eEEEcCCHH-----------HHHHHhcCc
Confidence 3456667899999999999999754 6689999999999 888763322 122223311
Q ss_pred HHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402 102 VASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146 (198)
Q Consensus 102 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~ 146 (198)
.. -+.-+++-+.+.|+||.|+++.++.+...++++.+..
T Consensus 243 lp------e~~q~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 243 LP------EGFQTSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred cc------hhcCCHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 11 1123566688899999999999999888888776543
No 130
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00011 Score=58.70 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEE--EeecCCcccCCCcccceEEEecccccccccCCchh-hhHHHHH
Q psy5402 21 KYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIV--FASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS-SVLFPRI 97 (198)
Q Consensus 21 ~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~--ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~-~~~l~~~ 97 (198)
.++..+...+.||...+.|.|..-|..|++++|-. ++.++ +++-..... |.+-+... ...-++.
T Consensus 76 AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn------------srimIHqP~-gg~~G~a~Di~i~A~e 142 (200)
T COG0740 76 AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN------------ARIMIHQPS-GGAQGQASDIEIHARE 142 (200)
T ss_pred HHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC------------ceEEEecCC-ccCccCHHHHHHHHHH
Confidence 46788889999999999999999999999999874 77777 666554444 22211111 0000111
Q ss_pred ---------------hcHHHH--HHHHhcCCCCCHHHHHhcCCcccccCchh
Q psy5402 98 ---------------FGNSVA--SELLYTGRKLNAQEALQYGFVSGVFTTEE 132 (198)
Q Consensus 98 ---------------vG~~~a--~~lll~g~~~~a~eA~~~Glv~~v~~~~~ 132 (198)
-|.... ....-....++|+||+++||+|+|.+..+
T Consensus 143 i~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~ 194 (200)
T COG0740 143 ILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESRE 194 (200)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccc
Confidence 111111 12233445599999999999999987543
No 131
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=97.86 E-value=0.00014 Score=60.67 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCc
Q psy5402 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88 (198)
Q Consensus 18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~ 88 (198)
.-.++.+.+.+++.|+++.|+..|+.+|..++++||-+++.++ +.+|--+..+|-.|..
T Consensus 106 AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADeIvM~p~------------a~LGpiDPqi~~~pA~ 164 (285)
T PF01972_consen 106 AAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADEIVMGPG------------AVLGPIDPQIGQYPAA 164 (285)
T ss_pred HHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCeEEECCC------------CccCCCCccccCCChH
Confidence 4456788888999999999999999999999999999999999 9999999999888754
No 132
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.75 E-value=0.00051 Score=58.14 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=60.0
Q ss_pred cCCCcEEEEEcCccchHHHHH-hhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHHH
Q psy5402 28 DYPKPLIAIVNGPAIGISATT-LALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASEL 106 (198)
Q Consensus 28 ~~~kp~IA~v~G~a~GgG~~l-alacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~l 106 (198)
.-..|.|+.+.|+|.||+... ++.||++|+.++ +.+++.-.+ .....+|..
T Consensus 205 ~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~------------A~IgfAGPr-----------VIe~t~ge~----- 256 (296)
T CHL00174 205 NKKLFYISILTSPTTGGVTASFGMLGDIIIAEPN------------AYIAFAGKR-----------VIEQTLNKT----- 256 (296)
T ss_pred cCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCC------------eEEEeeCHH-----------HHHHhcCCc-----
Confidence 567999999999999998765 777999999777 766543211 122222211
Q ss_pred HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHH
Q psy5402 107 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143 (198)
Q Consensus 107 ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~ 143 (198)
+.-..=+++-.++.|+||.+|+..++.+....++.-
T Consensus 257 -lpe~fq~ae~l~~~G~vD~iV~r~~lr~~l~~ll~~ 292 (296)
T CHL00174 257 -VPEGSQAAEYLFDKGLFDLIVPRNLLKGVLSELFQL 292 (296)
T ss_pred -CCcccccHHHHHhCcCceEEEcHHHHHHHHHHHHHh
Confidence 111123567788999999999999988877776654
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.74 E-value=0.00022 Score=58.72 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEcCccchHHHH-HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhh
Q psy5402 16 SITLQKYVAAFID---YPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSS 91 (198)
Q Consensus 16 ~~~~~~~~~~i~~---~~kp~IA~v~G~a~GgG~~-lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~ 91 (198)
...+.+++..+.. .+.|+|+.|-|.++|||+. +.+.+|.++|.++ +.+ +..++-+++
T Consensus 90 ~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~------------A~i-------~vm~~e~aa 150 (238)
T TIGR03134 90 NQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG------------AMV-------HVMDLESMA 150 (238)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC------------cEE-------EecCHHHHH
Confidence 3445555556654 4599999999999998864 4445888888887 655 444444443
Q ss_pred hHHHHHhcHHHHHHHHhcC--CCCCHHHHHhcCCcccccCchh
Q psy5402 92 VLFPRIFGNSVASELLYTG--RKLNAQEALQYGFVSGVFTTEE 132 (198)
Q Consensus 92 ~~l~~~vG~~~a~~lll~g--~~~~a~eA~~~Glv~~v~~~~~ 132 (198)
..+.+-. ..+.++.-.- ...+.+.+.++|+||+|+++.+
T Consensus 151 ~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 151 RVTKRSV--EELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 3333322 2333332221 2467788999999999998654
No 134
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.69 E-value=0.00027 Score=57.58 Aligned_cols=99 Identities=20% Similarity=0.162 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCE--EEeecCCcccCCCcccceEEEecccccccccCCchhhhH----
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDI--VFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL---- 93 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~--~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~---- 93 (198)
..++..+...+-||...+.|.|.+.+..|++++|- |++.++ +++-+....-|......-...
T Consensus 97 laIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpn------------s~iMIHqP~~~~~G~A~di~~~a~e 164 (222)
T PRK12552 97 FAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPH------------ATIVLHQPRSGARGQATDIQIRAKE 164 (222)
T ss_pred HHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCC------------cEEEeccCCcccccCHHHHHHHHHH
Confidence 34677777888899999999999999999999996 889888 887776655443211100000
Q ss_pred -----------HHHHhcH--HHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 94 -----------FPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 94 -----------l~~~vG~--~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
+....|. ..-.+.+-.-..++|+||+++||||+|+..
T Consensus 165 l~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 165 VLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 0111111 111233334455999999999999999864
No 135
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00053 Score=60.61 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEc---CccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccc--cCC-ch
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVN---GPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM--TPE-GC 89 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~---G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi--~p~-~g 89 (198)
.+.+++++++|.+.|.|++..|. ++|..+|..++++||+..+.+. +.+|-...-.+- .+. ..
T Consensus 71 ~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg------------T~iGaa~Pi~~~g~~~~~~~ 138 (436)
T COG1030 71 LDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG------------TNIGAATPIAGGGTSAKEAN 138 (436)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC------------CcccccceecCCCCCccchh
Confidence 35788999999999999999887 4699999999999999999999 555544432221 111 11
Q ss_pred -hhhHHHHH------hc--HHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 90 -SSVLFPRI------FG--NSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 90 -~~~~l~~~------vG--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
........ -| ...|.+++.....++++||.+.|++|-+..+
T Consensus 139 ~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 139 TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 11112221 12 3556789999999999999999999988754
No 136
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.54 E-value=0.00069 Score=56.82 Aligned_cols=93 Identities=25% Similarity=0.456 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHH
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFP 95 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~ 95 (198)
.+.+.+-+..+..+++|+||.|=|---+||.--...+|.+++.++ ++++. |.|.++++.+|.
T Consensus 174 ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~------------s~ySV------isPEG~AsILWk 235 (317)
T COG0825 174 SEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLEN------------STYSV------ISPEGCASILWK 235 (317)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHh------------ceeee------cChhhhhhhhhc
Confidence 456777788899999999999999888888777777999999999 88764 567777666554
Q ss_pred HHhcHHHHHHHHhcCCCCCHHHHHhcCCcccccCc
Q psy5402 96 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 96 ~~vG~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~ 130 (198)
. ..+|.+. .....++|++.+++|+||.|+|.
T Consensus 236 D---~~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 236 D---ASKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred C---hhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 3 4455543 35568999999999999999984
No 137
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.48 E-value=0.0014 Score=59.75 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhh----cCEEEeecCCcccCCCcccceEEEecccccccccCCchhhh
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL----CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV 92 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lala----cD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~ 92 (198)
....+++.++....+|.|+.|-|.++|||+.-+.. +|++++.++ +.++.-. |..+...
T Consensus 375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~------------a~~~v~~------pe~a~~i 436 (512)
T TIGR01117 375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT------------AEIAVMG------PAGAANI 436 (512)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC------------CeEeecC------HHHHHHH
Confidence 35556788888899999999999999887544432 899999998 7665422 1222222
Q ss_pred HHHHHhc----HHHHHHHH---hcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhc
Q psy5402 93 LFPRIFG----NSVASELL---YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146 (198)
Q Consensus 93 ~l~~~vG----~~~a~~ll---l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~ 146 (198)
.+.+.+. ...++.-. +.-+..++..+.+.|+||.|+++.+..+.....++.+..
T Consensus 437 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 437 IFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALAMLES 497 (512)
T ss_pred HhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHHHHhc
Confidence 2222111 11111111 122345788999999999999999998887777765543
No 138
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=97.42 E-value=0.00068 Score=49.96 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Q psy5402 135 RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN 196 (198)
Q Consensus 135 ~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~af~~ 196 (198)
+.+.+.++.+.+.+|.++..+-+++++....++.+.++.|......++.++||.||+++-+-
T Consensus 31 ~~a~~~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~LI 92 (118)
T PF13766_consen 31 EWAQKTLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALLI 92 (118)
T ss_dssp HHHHHHHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHh
Confidence 46777788899999999999999999999999999999999999999999999999999764
No 139
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.31 E-value=0.0023 Score=59.05 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=57.0
Q ss_pred HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHHHHH
Q psy5402 26 FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE 105 (198)
Q Consensus 26 i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~a~~ 105 (198)
+....+|.|+.|-|+|.|||......||++|++++. +.+.+ -|+...+.
T Consensus 201 ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~-----------a~i~~--------------------aGP~vV~~ 249 (569)
T PLN02820 201 MSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGN-----------GTIFL--------------------AGPPLVKA 249 (569)
T ss_pred HhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCC-----------cEEEe--------------------cCHHHHHh
Confidence 445678999999999999999999999999999872 44433 12222221
Q ss_pred HHhcCCCCCHHHH-----H--hcCCcccccCchh-HHHHHHHHHHHH
Q psy5402 106 LLYTGRKLNAQEA-----L--QYGFVSGVFTTEE-IERDLWPRIHAW 144 (198)
Q Consensus 106 lll~g~~~~a~eA-----~--~~Glv~~v~~~~~-l~~~a~~~a~~l 144 (198)
.+|+.+++++. + ..|.+|.+++++. ..+.+++++.-+
T Consensus 250 --~~Ge~v~~eeLGGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 250 --ATGEEVSAEDLGGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred --hcCcccCHHHhCCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 34555665553 2 4788888887643 334455555544
No 140
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.23 E-value=0.0022 Score=58.56 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=66.4
Q ss_pred CCccCchhhhhhhHHHHHHHHHH--HhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccc
Q psy5402 3 NNPTDLINEDTDTSITLQKYVAA--FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFT 80 (198)
Q Consensus 3 s~G~Dl~~~~~~~~~~~~~~~~~--i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~ 80 (198)
|.|..+++-... ...+.+++.. ..+-..|.|+++.|+|.||+......||++|+.++. +.+++
T Consensus 126 SgGarm~eg~~~-l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~-----------a~i~~--- 190 (512)
T TIGR01117 126 SGGARIQEAVDA-LKGYGDIFYRNTIASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNT-----------SQMFI--- 190 (512)
T ss_pred CCCCCccccchh-hhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccc-----------eEEEe---
Confidence 667766543221 1222333322 223458999999999999998888899999999972 33432
Q ss_pred cccccCCchhhhHHHHHhcHHHHHHHHhcCCCCCHHHH-------HhcCCcccccCc-hhHHHHHHHHHHHHh
Q psy5402 81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA-------LQYGFVSGVFTT-EEIERDLWPRIHAWA 145 (198)
Q Consensus 81 ~~Gi~p~~g~~~~l~~~vG~~~a~~lll~g~~~~a~eA-------~~~Glv~~v~~~-~~l~~~a~~~a~~la 145 (198)
+ |++..+. .+|+.+++++. ..-|.+|.++++ ++..+.+++++.-+-
T Consensus 191 --------a---------GP~vv~~--~~Ge~v~~e~lGGa~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp 244 (512)
T TIGR01117 191 --------T---------GPQVIKT--VTGEEVTAEQLGGAMAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLP 244 (512)
T ss_pred --------c---------ChHHHHh--hcCcccchhhcchHHHhccccceeEEecCChHHHHHHHHHHHHhCC
Confidence 1 2222221 24555555543 257999999875 456666666666554
No 141
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.15 E-value=0.0021 Score=58.46 Aligned_cols=88 Identities=27% Similarity=0.342 Sum_probs=59.8
Q ss_pred HHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhcHHH
Q psy5402 23 VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSV 102 (198)
Q Consensus 23 ~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG~~~ 102 (198)
...+.. ..|+|+.+.|+|.|||..++..||++|+.++. +.+++. |++.
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~-----------a~i~l~--------------------GP~v 172 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGT-----------ARIFLA--------------------GPRV 172 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTT-----------CEEESS--------------------THHH
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccc-----------eEEEec--------------------cccc
Confidence 344555 99999999999999999999999999999873 444321 2222
Q ss_pred HHHHHhcCCCCCHHH-------HHhcCCcccccCchh-HHHHHHHHHHHH
Q psy5402 103 ASELLYTGRKLNAQE-------ALQYGFVSGVFTTEE-IERDLWPRIHAW 144 (198)
Q Consensus 103 a~~lll~g~~~~a~e-------A~~~Glv~~v~~~~~-l~~~a~~~a~~l 144 (198)
.. ..+|+.++.++ +...|.+|.++++++ ..+.++++..-+
T Consensus 173 v~--~~~Ge~~~~~~lgG~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~l 220 (493)
T PF01039_consen 173 VE--SATGEEVDSEELGGADVHAAKSGVVDYVVDDEEDALAQIRRLLSYL 220 (493)
T ss_dssp HH--HHHSSCTSHHHHHBHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS
T ss_pred cc--cccCccccchhhhhhhhhcccCCCceEEEechHHHHHHHHHhhccc
Confidence 22 23568888765 347899999998753 344444444433
No 142
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=96.96 E-value=0.008 Score=55.78 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61 (198)
Q Consensus 18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~ 61 (198)
.+.+.+..+....|||||..++.+ -+|+.|+.+||-+++.+..
T Consensus 114 ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~G 156 (584)
T TIGR00705 114 EIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPMG 156 (584)
T ss_pred HHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCCc
Confidence 455566667677899999988875 6789999999999999984
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.53 E-value=0.041 Score=50.89 Aligned_cols=114 Identities=17% Similarity=0.080 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhh----hcCEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402 15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLA----LCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90 (198)
Q Consensus 15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lal----acD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~ 90 (198)
......+++.++....+|.|+.|=|.|+|+|..-+. ..|++++.++ ++ +|..++-+.
T Consensus 424 ~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~aM~g~~~~~d~~~awp~------------A~-------i~vmg~e~a 484 (569)
T PLN02820 424 IAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMWPN------------AR-------IGVMGGAQA 484 (569)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHHhcCcCCCCCEEEECCC------------Ce-------EEecCHHHH
Confidence 455677889999999999999999999998875543 4566666666 54 455554444
Q ss_pred hhHHHH-Hh------------cHHHH-HHH--HhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402 91 SVLFPR-IF------------GNSVA-SEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147 (198)
Q Consensus 91 ~~~l~~-~v------------G~~~a-~~l--ll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~ 147 (198)
...+.+ .+ -...+ ++. -..-+..++-.|.+.|+||+|+++.+........++.....
T Consensus 485 a~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 485 AGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTRRVLGLCLSAALNR 557 (569)
T ss_pred HHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHHHHHHHHHHHhhcC
Confidence 333332 11 00001 111 11122457777889999999999998887776666654443
No 144
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=96.41 E-value=0.0041 Score=56.46 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402 30 PKPLIAIVNGPAIGISATTLALCDIVFASDT 60 (198)
Q Consensus 30 ~kp~IA~v~G~a~GgG~~lalacD~~ia~~~ 60 (198)
-+|.|+.|-|.|.|||..+...||++|+.++
T Consensus 163 ~IPqIsvv~G~c~gGgaY~pal~D~~imv~~ 193 (526)
T COG4799 163 VIPQISVVMGPCAGGGAYSPALTDFVIMVRD 193 (526)
T ss_pred CCCEEEEEEecCcccccccccccceEEEEcC
Confidence 3999999999999999999999999999998
No 145
>PRK10949 protease 4; Provisional
Probab=96.41 E-value=0.03 Score=52.27 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCC
Q psy5402 17 ITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61 (198)
Q Consensus 17 ~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~ 61 (198)
+.+.+.+..+....|||||.-+.. .-+++.|+.+||-+++.+..
T Consensus 132 ~eI~~ai~~fk~sGKpVvA~~~~~-~s~~YyLASaAD~I~l~P~G 175 (618)
T PRK10949 132 QYIGKALREFRDSGKPVYAVGDSY-SQGQYYLASFANKIYLSPQG 175 (618)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCc-cchhhhhhhhCCEEEECCCc
Confidence 345566677777889999964444 46789999999999999884
No 146
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.16 E-value=0.02 Score=52.10 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEcCccchHHHHHhhhc----CEEEeecCCcccCCCcccceEEEecccccccccCCchh
Q psy5402 15 TSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALC----DIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90 (198)
Q Consensus 15 ~~~~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalac----D~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~ 90 (198)
......+++.++..++.|+|..|-|.++|||....... |+++|.++ ++++. .++-+.
T Consensus 352 ~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~------------a~~~v-------m~~e~a 412 (493)
T PF01039_consen 352 IIRAGARLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT------------AEIGV-------MGPEGA 412 (493)
T ss_dssp HHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-------------EEES-------S-HHHH
T ss_pred hHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc------------ceeee-------cChhhh
Confidence 34566789999999999999999999999988665555 78888888 66654 333222
Q ss_pred -hhHHHHHhcHH-------H--HHHHHh--cCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402 91 -SVLFPRIFGNS-------V--ASELLY--TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148 (198)
Q Consensus 91 -~~~l~~~vG~~-------~--a~~lll--~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~ 148 (198)
...+.+..-.. . ..+.+- .-+.-++..+...|++|.|+++.+..+.......-..+.+
T Consensus 413 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~l~~~~~~~ 482 (493)
T PF01039_consen 413 ASILYRDELEAAEAEGADPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAALEMLWQKP 482 (493)
T ss_dssp HHHHTHHHHHHSCHCCHSHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHHHHHHTTSH
T ss_pred heeeehhhhhhhhcccchhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHhCc
Confidence 22222211100 0 011111 1112578889999999999999998887777666555443
No 147
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=95.42 E-value=0.092 Score=43.97 Aligned_cols=100 Identities=19% Similarity=0.209 Sum_probs=72.5
Q ss_pred HHHHHHhcCCCcEEEEEcCccchHH-HHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHHhc
Q psy5402 21 KYVAAFIDYPKPLIAIVNGPAIGIS-ATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFG 99 (198)
Q Consensus 21 ~~~~~i~~~~kp~IA~v~G~a~GgG-~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~vG 99 (198)
..+.++.+...|.|+.+..+..||= ..+++..|+.||-+. |.+||.--++ +...+
T Consensus 186 aAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~iAEP~------------AlIGFAGpRV-----------IEQTi- 241 (294)
T COG0777 186 AALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPG------------ALIGFAGPRV-----------IEQTI- 241 (294)
T ss_pred HHHHHHHhcCCceEEEecCCCccchhHhHHhccCeeecCcc------------cccccCcchh-----------hhhhh-
Confidence 3466777889999999999999875 578999999999989 8877654442 11111
Q ss_pred HHHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCCH
Q psy5402 100 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149 (198)
Q Consensus 100 ~~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~~ 149 (198)
++-+-.| .=+++-.++.|+||.||+..++.+....+...+...++
T Consensus 242 ----re~LPeg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 242 ----REKLPEG-FQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred ----cccCCcc-hhhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 2222222 23456678999999999999999888888777765544
No 148
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=95.13 E-value=0.098 Score=46.43 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHc
Q psy5402 136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWE---SEEFMNAITAFFN 196 (198)
Q Consensus 136 ~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~~~e~~~~~~~~~---~~~~~e~~~af~~ 196 (198)
.+.+.++.+.+.+|.++..+-+++++....++.+.++.|......++. ++||.||+++-+-
T Consensus 293 wa~~~~~~l~~~sP~Sl~vt~~~~~~~~~~~l~e~~~~e~~~~~~~~~~~~~~DF~EGVRA~Li 356 (401)
T PLN02157 293 WCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLI 356 (401)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHc
Confidence 445556677889999999999999988778999999999999888875 6999999999764
No 149
>KOG0840|consensus
Probab=93.30 E-value=0.54 Score=39.09 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=50.1
Q ss_pred HHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhh-----HH--
Q psy5402 22 YVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV-----LF-- 94 (198)
Q Consensus 22 ~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~-----~l-- 94 (198)
++..+..+.-||=..+=|.|.+-|..|..+- +.+ -++.+|..++=|.-+.|+.. ..
T Consensus 142 IYDtMq~ik~~V~Tic~G~Aas~aalLLaaG-----~KG------------~R~alPnsriMIhQP~gga~Gqa~Di~i~ 204 (275)
T KOG0840|consen 142 IYDTMQYIKPDVSTICVGLAASMAALLLAAG-----AKG------------KRYALPNSRIMIHQPSGGAGGQATDIVIQ 204 (275)
T ss_pred HHHHHHhhCCCceeeehhhHHhHHHHHHhcC-----CCc------------ceeecCCceeEEeccCCCcCccchHHHHH
Confidence 5566666666666666688887665554432 233 56777776665553322211 10
Q ss_pred -HHHh--------------c--HHHHHHHHhcCCCCCHHHHHhcCCcccccC
Q psy5402 95 -PRIF--------------G--NSVASELLYTGRKLNAQEALQYGFVSGVFT 129 (198)
Q Consensus 95 -~~~v--------------G--~~~a~~lll~g~~~~a~eA~~~Glv~~v~~ 129 (198)
..++ | .....+-+-.-+.++|+||+++||||.|.+
T Consensus 205 akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 205 AKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhc
Confidence 0111 0 001111222334489999999999999986
No 150
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=88.08 E-value=2.6 Score=38.69 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEcCccchHHHHHh----hhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhH
Q psy5402 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTL----ALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVL 93 (198)
Q Consensus 18 ~~~~~~~~i~~~~kp~IA~v~G~a~GgG~~la----lacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~ 93 (198)
+-.+++.++.+..+|.|..|-|.++|||...+ +.+|+.+ ..|..+++...+-|....
T Consensus 385 ~Gakl~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~-------------------AwP~a~iaVMG~egAv~i 445 (526)
T COG4799 385 HGAKLLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNY-------------------AWPTAEIAVMGPEGAVSI 445 (526)
T ss_pred hhhHHHhhHhhccCCeEEEEecccccceeeeecCccCCCceeE-------------------ecCcceeeecCHHHHHHH
Confidence 44578999999999999999999999997533 2344444 445555555443333322
Q ss_pred HH-HHhcH-HH--H--------HHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcC
Q psy5402 94 FP-RIFGN-SV--A--------SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147 (198)
Q Consensus 94 l~-~~vG~-~~--a--------~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~ 147 (198)
+. +.+.. .+ . ..--+.-+.-.+--|.+.|++|.|+++.+........+..+...
T Consensus 446 ~~~k~l~~~~~~~~~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p~~tR~~L~~~l~~~~~k 511 (526)
T COG4799 446 LYRKELAAAERPEEREALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDPADTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHhhcccCchhHHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCHHHHHHHHHHHHHHHhcC
Confidence 22 22211 00 0 11111222345666788999999999888777666666665544
No 151
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=79.09 E-value=21 Score=29.42 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCCcEEEEEcCccchHHH-HHhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHHH
Q psy5402 19 LQKYVAAFIDYPKPLIAIVNGPAIGISA-TTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI 97 (198)
Q Consensus 19 ~~~~~~~i~~~~kp~IA~v~G~a~GgG~-~lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~~ 97 (198)
+.+.+..-+...-|||+.|-|.|++||| .-.+.+|..||-++ +.+.- .+- -+..+..+
T Consensus 94 la~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g------------a~i~v-------M~~-~s~ARVTk- 152 (234)
T PF06833_consen 94 LAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG------------AMIHV-------MGK-PSAARVTK- 152 (234)
T ss_pred HHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC------------Ceeec-------CCh-HHhHHHhh-
Confidence 3445566667889999999999999987 46888998888877 33311 110 11222222
Q ss_pred hcHHHHHHHHhcCCC--CCHHHHHhcCCcccccCc
Q psy5402 98 FGNSVASELLYTGRK--LNAQEALQYGFVSGVFTT 130 (198)
Q Consensus 98 vG~~~a~~lll~g~~--~~a~eA~~~Glv~~v~~~ 130 (198)
..-..-.++.-+--+ ++.+--.++|.++++.+.
T Consensus 153 ~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~~ 187 (234)
T PF06833_consen 153 RPVEELEELAKSVPVFAPGIENYAKLGALDELWDG 187 (234)
T ss_pred cCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhcc
Confidence 233333444444433 566778899999999874
No 152
>KOG0540|consensus
Probab=78.09 E-value=8.9 Score=34.63 Aligned_cols=105 Identities=21% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHH---HhhhcCEEEeecCCcccCCCcccceEEEecccccccccCCchhhhHHHH
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISAT---TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPR 96 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~---lalacD~~ia~~~~~~~~~~~~~~~a~~~~pe~~~Gi~p~~g~~~~l~~ 96 (198)
..++.+.....+|-|..+-|.++||-.. -.+.-|+.++-++ |+++.--.. +....+.+
T Consensus 412 Aklv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~------------A~IavmG~~-------~a~~Vi~q 472 (536)
T KOG0540|consen 412 AKLVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPN------------ARIAVMGGK-------QAANVIFQ 472 (536)
T ss_pred hhhhhhhhhccCceEEEEecCccCCcccccccccCCceeEEccc------------ceeeecccc-------chhhhhhh
Confidence 4678888889999999999999996544 4566788888888 776554321 11112222
Q ss_pred H-----hcH-HHHHHHHhcCCCCCHHHHHhcCCcccccCchhHHHHHHHHHHHHhcCC
Q psy5402 97 I-----FGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148 (198)
Q Consensus 97 ~-----vG~-~~a~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~la~~~ 148 (198)
. +.. ..+.+.+ |.+|. |...|++|.|+|+.+.....-...+..+..|
T Consensus 473 ~~~e~a~~~~~~~~E~f--~npy~---a~~Rg~~D~II~p~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 473 ITLEKAVALKAPYIEKF--GNPYY---AAARGWDDGIIDPSDTRKVLGLDLQAAANKP 525 (536)
T ss_pred hhhhhhhhhcchHHHHh--cCccH---HHHhhccccccChhHhhHHHHHHHHHHhcCC
Confidence 1 110 1112232 66665 4578999999998887765555555555444
No 153
>smart00250 PLEC Plectin repeat.
Probab=73.99 E-value=3 Score=24.01 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=17.0
Q ss_pred cCCCCCHHHHHhcCCccc
Q psy5402 109 TGRKLNAQEALQYGFVSG 126 (198)
Q Consensus 109 ~g~~~~a~eA~~~Glv~~ 126 (198)
+|+++|-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 154
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=67.81 E-value=1.8 Score=25.95 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=16.6
Q ss_pred hcCCCCCHHHHHhcCCcccc
Q psy5402 108 YTGRKLNAQEALQYGFVSGV 127 (198)
Q Consensus 108 l~g~~~~a~eA~~~Glv~~v 127 (198)
-+|++++-++|.+.||||.-
T Consensus 17 ~tg~~lsv~~A~~~glId~~ 36 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSD 36 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HH
T ss_pred CCCeEEcHHHHHHCCCcCHH
Confidence 37899999999999999853
No 155
>KOG0033|consensus
Probab=32.44 E-value=69 Score=27.20 Aligned_cols=91 Identities=13% Similarity=0.208 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCC-CCHHHH------HhcCCcccccC-chhHHHHHHHHHHHHhcCCHHHHHHHHHHhhchhhhcHHHHH
Q psy5402 100 NSVASELLYTGRK-LNAQEA------LQYGFVSGVFT-TEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEAN 171 (198)
Q Consensus 100 ~~~a~~lll~g~~-~~a~eA------~~~Glv~~v~~-~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~~~~~ 171 (198)
-.....+++.|.+ |..+.- ...|=++---| .+.+.+.|..+.+++....|.-....++.++..|..
T Consensus 198 cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~------ 271 (355)
T KOG0033|consen 198 CGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWIC------ 271 (355)
T ss_pred hhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhc------
Confidence 3345667777754 554221 12233332221 145678999999999999998888889888887653
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHccC
Q psy5402 172 KRECKRLEERWESEEFMNAITAFFNRK 198 (198)
Q Consensus 172 ~~e~~~~~~~~~~~~~~e~~~af~~kr 198 (198)
+.+.++.....+|..+-++.|=++|
T Consensus 272 --~r~~~As~~H~~dtvd~lrkfNarR 296 (355)
T KOG0033|consen 272 --NRERVASAIHRQDTVDCLKKFNARR 296 (355)
T ss_pred --chHHHHHHhhhHHHHHHHHHhhHHH
Confidence 3444556666777777777776654
No 156
>KOG0333|consensus
Probab=29.09 E-value=58 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCcEEEEEcCccc-hHHHHHhhhcCEEEeecC
Q psy5402 30 PKPLIAIVNGPAI-GISATTLALCDIVFASDT 60 (198)
Q Consensus 30 ~kp~IA~v~G~a~-GgG~~lalacD~~ia~~~ 60 (198)
..-+|..|+|+.+ =-||.|...|+++||++.
T Consensus 350 g~r~vsvigg~s~EEq~fqls~gceiviatPg 381 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMGCEIVIATPG 381 (673)
T ss_pred cceEEEEecccchhhhhhhhhccceeeecCch
Confidence 3568999999999 678999999999999998
No 157
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.96 E-value=89 Score=25.44 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCC--CcEEEEEcCccchHHHHHhhhcCE
Q psy5402 18 TLQKYVAAFIDYP--KPLIAIVNGPAIGISATTLALCDI 54 (198)
Q Consensus 18 ~~~~~~~~i~~~~--kp~IA~v~G~a~GgG~~lalacD~ 54 (198)
.+...+..+...| .+.=..+-|+|+||++.+.+++..
T Consensus 95 d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 95 DIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 3444555555555 333234569999999999999987
No 158
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=27.44 E-value=1.2e+02 Score=23.78 Aligned_cols=37 Identities=24% Similarity=0.070 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCC--CcEEEEEcCccchHHHHHhhhcCE
Q psy5402 18 TLQKYVAAFIDYP--KPLIAIVNGPAIGISATTLALCDI 54 (198)
Q Consensus 18 ~~~~~~~~i~~~~--kp~IA~v~G~a~GgG~~lalacD~ 54 (198)
.+...+..+...+ .+--..+=|+|.||.+.+.++++.
T Consensus 81 ~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 81 DLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 3445577777777 333445569999999999888764
No 159
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.63 E-value=83 Score=24.78 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEcCc
Q psy5402 16 SITLQKYVAAFIDYPKPLIAIVNGP 40 (198)
Q Consensus 16 ~~~~~~~~~~i~~~~kp~IA~v~G~ 40 (198)
...|.+.+..+.+++||+||.++-.
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrr 140 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRR 140 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3468888999999999999999855
No 160
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=22.90 E-value=87 Score=20.46 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCcEEEEEcCccc
Q psy5402 21 KYVAAFIDYPKPLIAIVNGPAI 42 (198)
Q Consensus 21 ~~~~~i~~~~kp~IA~v~G~a~ 42 (198)
..+..|+.+|-.||..+||.++
T Consensus 17 ~~IE~ie~~PDttItLinGkky 38 (67)
T COG1582 17 HHIETIEAFPDTTITLINGKKY 38 (67)
T ss_pred HHhhhhhccCCcEEEEEcCcEE
Confidence 4577889999999999999875
No 161
>PLN03037 lipase class 3 family protein; Provisional
Probab=22.86 E-value=85 Score=29.04 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=21.0
Q ss_pred CcEEEEEcCccchHHHHHhhhcCEEEe
Q psy5402 31 KPLIAIVNGPAIGISATTLALCDIVFA 57 (198)
Q Consensus 31 kp~IA~v~G~a~GgG~~lalacD~~ia 57 (198)
...=-.|-||.+||.+.+..+.|++.-
T Consensus 316 e~~SItVTGHSLGGALAtLaA~DIa~~ 342 (525)
T PLN03037 316 EEVSLTITGHSLGGALALLNAYEAARS 342 (525)
T ss_pred CcceEEEeccCHHHHHHHHHHHHHHHh
Confidence 334345889999999999999998643
No 162
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.88 E-value=80 Score=26.74 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCcEEEEEcCccchHHHHHhhhcCEEEeecC
Q psy5402 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60 (198)
Q Consensus 20 ~~~~~~i~~~~kp~IA~v~G~a~GgG~~lalacD~~ia~~~ 60 (198)
..+.++|..+|.|||.+| ||-.=- ...=+.+|.|..||+
T Consensus 97 e~varai~~~~~PvisaI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 97 EEVARAIAASPIPVISAI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred HHHHHHHHhCCCCEEEec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 357899999999999988 554321 234567888888887
Done!