RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5402
(198 letters)
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 120 bits (304), Expect = 5e-34
Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
Q + A D PKP+IA VNG A+G CDI A++ A F
Sbjct: 86 PGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDA------------KFGL 133
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
P G+ P + PR+ G A ELL TG ++A EAL+ G V V E +L
Sbjct: 134 PEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAE---EL 190
Query: 138 WPRIHAWAK---LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
R A+ PP ++ K+LVR + + L EA + E + SE+F + AF
Sbjct: 191 LERALELARRLAAPPLALAATKRLVRAALEADLAEALEAEALAFARLFSSEDFREGVRAF 250
Query: 195 FNRK 198
RK
Sbjct: 251 LERK 254
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 112 bits (282), Expect = 1e-30
Identities = 56/176 (31%), Positives = 86/176 (48%), Gaps = 28/176 (15%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PKP++A VNGPA+G+ +LAL CD+V+AS++A F PF G+ P+
Sbjct: 96 PKPVVAAVNGPAVGV-GVSLALACDLVYASESA------------KFSLPFAKLGLCPDA 142
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE-------RDLWPRI 141
S L PR+ G + A+E+L G L+A+EAL+ G V+ V E++ L
Sbjct: 143 GGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKL---- 198
Query: 142 HAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
A P ++ + K+ + L+ L EA RE + +F TAF +
Sbjct: 199 ---AAGPASALRYTKRAINAATLTELEEALAREAAGFGRLLRTPDFREGATAFIEK 251
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 108 bits (272), Expect = 7e-30
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
LQ+ + A + PKP+IA VNG A+G CDI A++ A F P
Sbjct: 82 LQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDA------------KFGLP 129
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
G+ P G + PR+ G + A ELL TGR+++A+EAL+ G V V EE L
Sbjct: 130 EVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEE----LL 185
Query: 139 PRIHAWAK 146
A+
Sbjct: 186 AAALELAR 193
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 97.8 bits (244), Expect = 3e-25
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 10 NEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPV 68
+ S+ Q + D PKP+IA VNG A+G LAL CD A+D A
Sbjct: 70 AQQAQFSLEAQDLWSRLEDLPKPVIAAVNGYALG-GGLELALACDYRIAADNAK------ 122
Query: 69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
F P G+ P + PRI G S A E+L TGR++ AQEAL+ G V V
Sbjct: 123 ------FGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVV 176
Query: 129 TTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM 188
E++ + A PP ++ K +R + L E + + + +++
Sbjct: 177 PEEQLVEEAIELAQRLADKPPLALAALKAAMRAALEDALPEVRAQALRLYPAPFSTDDVK 236
Query: 189 NAITAF 194
I AF
Sbjct: 237 EGIQAF 242
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 94.4 bits (235), Expect = 1e-23
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
KP+IA +NG GI T +CD+ FA+D A F T F RG+ E
Sbjct: 108 RKPVIAAINGACAGIGLTHALMCDVRFAADGAK------------FTTAFARRGLIAEHG 155
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK--- 146
S + PR+ G++ A +LL + R A+EAL+ G V+ V +E L R A+A+
Sbjct: 156 ISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE----LMERTLAYAEDLA 211
Query: 147 --LPPQSM-IFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
+ P SM + +QL L EA R + + E + +F+ + +F ++
Sbjct: 212 RNVSPASMAVIKRQLYEDA-FQTLAEATARANREMHESLQRPDFIEGVASFLEKR 265
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 88.5 bits (220), Expect = 2e-21
Identities = 60/179 (33%), Positives = 87/179 (48%), Gaps = 26/179 (14%)
Query: 28 DYPKPLIAIVNGPAIGISAT-TLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
D KP+IA VNGPA+G+ AT TLA+ DI AS A FV F RG+ P
Sbjct: 111 DSLKPVIAAVNGPAVGVGATMTLAM-DIRLASTAARF----GFV--------FGRRGIVP 157
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
E SS PR+ G A E +Y+GR +AQEAL G V V + +L P A A+
Sbjct: 158 EAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPD----ELLPAARALAR 213
Query: 147 L-----PPQSMIFAKQLVRVPMLSMLH--EANKRECKRLEERWESEEFMNAITAFFNRK 198
P S+ +Q++ M H EA++ + + + R S + +++F ++
Sbjct: 214 EIADNTSPVSVALTRQMMW-RMAGADHPMEAHRVDSRAIYSRGRSGDGKEGVSSFLEKR 271
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 87.5 bits (217), Expect = 3e-21
Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 22 YVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFT 80
++ A + KP+++ V+G AIGI TT+ L CD+ FAS ++ F TPF
Sbjct: 89 FLIALAEAEKPIVSGVDGLAIGI-GTTIHLHCDLTFASP------------RSLFRTPFV 135
Query: 81 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
+ PE SS+L PR+ G+ A LL G +A+ A + G + + E +E +
Sbjct: 136 DLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKA 195
Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
A PPQ++ A+ L+R P +L + E K R +S E A AF R
Sbjct: 196 AEELAAKPPQALQIARDLMRGPREDILARID-EEAKHFAARLKSAEARAAFEAFMRR 251
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 87.3 bits (217), Expect = 4e-21
Identities = 49/145 (33%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
+Q+ A + P+IA VNGPAIG +CDI AS+TA F
Sbjct: 92 IQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETA------------RFAES 139
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI---ER 135
F G+ P + L PRI G + A+E+ +TG ++A AL++G VS V +++ R
Sbjct: 140 FVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAAR 199
Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVR 160
L RI A PP ++ K+L+R
Sbjct: 200 ALAERI---AANPPHALRLTKRLLR 221
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 71.3 bits (175), Expect = 4e-15
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 32/208 (15%)
Query: 3 NNPTDLINEDTDTSITLQKYVAAFI----DYPKPLIAIVNGPAIGISATTLALCDIVFAS 58
+ + D L+ F+ + P P++ VNGPA G+ + + D++ +
Sbjct: 72 GSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCA 131
Query: 59 DTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
+A + LQA F G+ P+G S+ L PR+ G + A EL G KL A+ A
Sbjct: 132 RSA-------YFLQA-----FRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETA 179
Query: 119 LQYGFVSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLV----RVPMLSMLHEA 170
LQ+G V+ V E L A P ++ ++L L+
Sbjct: 180 LQWGLVNRVVDDAE----LMAEAMKLAHELANGPTVALGLIRKLYWDSPENDFEEQLNL- 234
Query: 171 NKRECKRLEERWESEEFMNAITAFFNRK 198
+RE +R+ + +E+F + AF ++
Sbjct: 235 -EREAQRIAGK--TEDFKEGVGAFLQKR 259
>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 69.3 bits (170), Expect = 2e-14
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 25 AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLR-G 83
A D PKPLI + G A G +++CD+ A A F L T R G
Sbjct: 95 ALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGAR------FGLTET-------RLG 141
Query: 84 MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143
+ P S + R+ G + A + + R +A+EA++ G +S V E ++ + +
Sbjct: 142 LIPATISPYVVARM-GEANARRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTP 200
Query: 144 WAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
+ P ++ AK LVR + + L + WE+EE I AFF+++
Sbjct: 201 YLSCAPGAVAAAKALVRALGAPIDEAVIDATIEALADTWETEEAREGIAAFFDKR 255
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 68.6 bits (168), Expect = 3e-14
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 18/172 (10%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
D KP+IA VNG A G LAL D + +D A+F P G+ P
Sbjct: 92 DLDKPVIAAVNGYAFG-GGFELALAADFIVCAD------------NASFALPEAKLGIVP 138
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
+ + P+ ++A+E++ TGR+++A+EAL++G V+ V E+
Sbjct: 139 DSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVN 198
Query: 147 LPPQSMIFAKQLVR----VPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ K++ R +P+ K SE+ + AF
Sbjct: 199 SAPLAIAALKEIYRETSEMPVEEAYRYIRSGVLKHYPSVLHSEDALEGPRAF 250
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 65.4 bits (160), Expect = 5e-13
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 43/158 (27%)
Query: 23 VAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFA---SDTAILLNHPVFVLQATFHTPF 79
V A P+P+IA V+G G A D+ + TA L F
Sbjct: 106 VKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFL---------------F 150
Query: 80 TLRGMTPEGC---SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
T G+ G + L PRI G ASELLYTGR ++A+E ++GF +
Sbjct: 151 TRVGLA--GADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFN----------- 197
Query: 137 LWPRIHAWAKLPPQSMIFAKQLVRVPML------SMLH 168
R+ +L ++ A++L P +MLH
Sbjct: 198 ---RLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLH 232
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 64.3 bits (157), Expect = 1e-12
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 28/169 (16%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-LNHPVFVLQATF 75
T+ + V PK I+ ++GPA G+ ++AL D V A +A L +N
Sbjct: 86 TISEIVVTLYTMPKLTISAIHGPAAGL-GLSIALTADYVIADISAKLAMN---------- 134
Query: 76 HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
F G+ P+G + G + A ++++ G+KL+A EAL G + V + +
Sbjct: 135 ---FIGIGLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVI-GGDFQT 190
Query: 136 DLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKR---LEER 181
+I W + P ++MI KQ+ E N+ + ++ LE+R
Sbjct: 191 AAKQKISEWLQKPLKAMIETKQI--------YCELNRSQLEQVLQLEKR 231
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 63.4 bits (155), Expect = 3e-12
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 30/140 (21%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL---CDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
D PKP IA V G I A L L CD++ ASD A F P G+
Sbjct: 116 DLPKPTIAQVQGACI---AGGLMLAWVCDLIVASD------------DAFFSDPVVRMGI 160
Query: 85 TPEGCSSVLF--PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWP 139
F P G A ELL+TG +L A EA + G V+ V +E+E +L
Sbjct: 161 ----PGVEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELAR 216
Query: 140 RIHAWAKLPPQSMIFAKQLV 159
RI A +PP + K+ V
Sbjct: 217 RI---AAMPPFGLRLTKRAV 233
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 62.5 bits (152), Expect = 5e-12
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 31 KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
KP+IA +NG A+G CDI AS+ A F P G+TP
Sbjct: 98 KPVIAAINGFALGGGCELSMACDIRIASEKA------------KFGQPEVGLGITPGFGG 145
Query: 91 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
+ RI G A EL+YTG +NA+EAL+ G V+ V E++ + + A P
Sbjct: 146 TQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPI 205
Query: 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
++ K + M + A E + E + +E+ +TAF ++
Sbjct: 206 AVKLCKDAINRGMQVDIDTAVAIEAEDFGECFSTEDQTEGMTAFVEKR 253
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 61.3 bits (149), Expect = 1e-11
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P+P+IA +NG A+G LAL CD A+++A L T + P
Sbjct: 97 PQPVIAAINGIALG-GGLELALACDFRIAAESASL------------GLTETTLAIIPGA 143
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
+ PR+ G A EL+YTGR+++AQEA + G V V +E
Sbjct: 144 GGTQRLPRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLE 189
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 61.2 bits (149), Expect = 1e-11
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 29 YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
+PKP+IA+V G G A L + CD++ A+ T+ P A P+ L G+
Sbjct: 95 FPKPVIAMVEGSVWG-GAFELIMSCDLIIAASTSTFAMTP-----ANLGVPYNLSGI--- 145
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAW 144
+ F G + E+ +T + AQ AL G ++ V EE+E + I
Sbjct: 146 ----LNFTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHI--- 198
Query: 145 AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER----WESEEFMNAITAFFNRK 198
++ P ++ K+ +RV L H N E +R++ ++SE++ + AF ++
Sbjct: 199 SEKAPLAIAVIKEQLRV--LGEAHPMNPDEFERIQGLRRAVYDSEDYQEGMNAFLEKR 254
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 60.6 bits (147), Expect = 2e-11
Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 12/169 (7%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P P++ VNG A G A CDIV A+++ A F F G+ P+
Sbjct: 93 PLPVVCAVNGVAAGAGANLALACDIVLAAES------------ARFIQAFAKIGLIPDSG 140
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
+ PR+ G + A L G KL+A+ A +G + V + + A P
Sbjct: 141 GTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPT 200
Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
+ + K+ ++ + L E E S ++ +TAF +++
Sbjct: 201 RGLALTKRAIQAAATNSLDTQLDLERDLQRELGRSADYAEGVTAFLDKR 249
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 59.3 bits (144), Expect = 8e-11
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 29 YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
+ KP+IA ++G A+G LA+ C I FA+++A L P L G+ P
Sbjct: 93 FSKPVIAAIHGAALG-GGLELAMSCHIRFATESA-KLGLPELNL-----------GLIPG 139
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
+ PR G + A E++ T + EAL++G V+GVF E + D A
Sbjct: 140 FAGTQRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGK 199
Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P + +L++ S +E KRE K E + SE+ + AF
Sbjct: 200 SPATTRAVLELLQTTKSSSYYEGVKREAKIFGEVFTSEDAKEGVQAF 246
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 58.2 bits (141), Expect = 1e-10
Identities = 47/132 (35%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 7 DLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNH 66
DL D L + + AF KPLIA VNG A+G LCDIV A +
Sbjct: 72 DLAATLNDPRPQLWQRLQAF---NKPLIAAVNGYALGAGCELALLCDIVIAGEN------ 122
Query: 67 PVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 126
A F P G+ P + R G S+AS+++ TG + AQ+A Q G VS
Sbjct: 123 ------ARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGLVSE 176
Query: 127 VFTTE-EIERDL 137
VF E +ER L
Sbjct: 177 VFPPELTLERAL 188
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 57.8 bits (140), Expect = 2e-10
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 31 KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
KPLIA V GPAI L DI A ++A F + P G S
Sbjct: 101 KPLIAAVEGPAIAGGTEILQGTDIRVAGESA------------KFGISEAKWSLFPMGGS 148
Query: 91 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
+V R +VA +LL TGR + A EA + G + V
Sbjct: 149 AVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV 185
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 57.7 bits (140), Expect = 2e-10
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
D KP+IA VNG A+G LAL CD++ A++ A TF P G+
Sbjct: 92 DLDKPIIAAVNGVAMG-GGFELALACDLIVAAENA------------TFALPEPRVGLAA 138
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA- 145
PR G A ++ TGR++ A+E L+ GFV+ V E+ WA
Sbjct: 139 LAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGELLA----AAERWAD 194
Query: 146 ---KLPPQSMIFAKQLVRVPMLSMLHEA--NKRECKRLEERWESEEFMNAITAF 194
P S+ +KQ V + L EA +R+ +E R S++++ AF
Sbjct: 195 DILACSPLSIRASKQAVYRGLEVSLEEAITAQRDYPAVEARRASQDYIEGPKAF 248
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 55.2 bits (133), Expect = 2e-09
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFH 76
+L+ ++ P IA+V G A+G LAL CD+ + +A F
Sbjct: 76 SLRSTFSSLEALSIPTIAVVEGAALG-GGLELALSCDLRICGE------------EAVFG 122
Query: 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
P T + P + PR+ G S A EL++TGR++ A+EA G V
Sbjct: 123 LPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV 170
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 54.6 bits (132), Expect = 3e-09
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
L ++ A +PKP+IA V G A G + +LAL CD++ A+ A FV+
Sbjct: 87 LHDWIRAIRAFPKPVIAAVEGAAAG-AGFSLALACDLLVAARDA------KFVMA----- 134
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
+ G+TP+G S R +A+ELL G+ ++A+ G V+ + + +
Sbjct: 135 -YVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGVVNRLAEPGQALAE- 192
Query: 138 WPRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
A A P ++ K L+ + L + E + + I A
Sbjct: 193 ---ALALADQLAAGSPNALARIKSLIADAPEATLAAQLEAERDHFVASLHHADALEGIAA 249
Query: 194 FFNRK 198
F ++
Sbjct: 250 FLEKR 254
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 54.8 bits (132), Expect = 3e-09
Identities = 41/125 (32%), Positives = 53/125 (42%), Gaps = 15/125 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
Q A +PKP+IA VNG A G + AS+ +A F P
Sbjct: 90 QAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASE------------RALFAKPE 137
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI---ERD 136
GM P + PR+ G A ELL TG +A+ AL+ G V+ V EE+ R
Sbjct: 138 IRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHEELLPAARA 197
Query: 137 LWPRI 141
L RI
Sbjct: 198 LARRI 202
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 54.6 bits (132), Expect = 3e-09
Identities = 44/146 (30%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 23 VAAFIDYPKPLIAIVNGPAI--GISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPF 79
A+ KP+I +NG A+ G+ LAL CDI+ AS+ A F A H
Sbjct: 87 SPAWPAMRKPVIGAINGAAVTGGLE---LALACDILIASERA------RF---ADTHA-- 132
Query: 80 TLR-GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
R G+ P SV P+ G A + TG L+A +AL+ G V+ V +E L
Sbjct: 133 --RVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDE----LL 186
Query: 139 PRIHAWAK----LPPQSMIFAKQLVR 160
PR A P ++ K
Sbjct: 187 PRARRLAASIAGNNPAAVRALKASYD 212
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 54.4 bits (131), Expect = 4e-09
Identities = 45/169 (26%), Positives = 66/169 (39%), Gaps = 12/169 (7%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
PKP+I V+G G +A D AS + F F G+ P+
Sbjct: 98 PKPVIMCVDGAVAGAAANMAVAADFCIAST------------KTKFIQAFVGVGLAPDAG 145
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
L R G + A+ L TG L A++AL+YGFV V +E++E+ + +
Sbjct: 146 GLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSS 205
Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
S K LV + K E E E+F + AF R+
Sbjct: 206 NSYAAIKSLVWESFFKGWEDYAKLELALQESLAFKEDFKEGVRAFSERR 254
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 53.8 bits (130), Expect = 5e-09
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
LQ + A D KP+IA V G IG ++ CD+ +AS A
Sbjct: 98 LQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAK---------------- 141
Query: 79 FTLR----GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
F++R GM + S PRI G+ EL TGR ++A EA + G V+ V+ +
Sbjct: 142 FSVREVDLGMVADVGSLQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDAD 199
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 53.8 bits (130), Expect = 6e-09
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
PKP+IA V+G A +A CDI A+D A F G+ P
Sbjct: 99 PKPVIARVHGDAYAGGMGLVAACDIAVAADHA------------VFCLSEVRLGLIPATI 146
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
S + R G A T + +A EAL+ G V V E ++ + + A P
Sbjct: 147 SPYVI-RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSP 205
Query: 150 QSMIFAKQLVR 160
Q++ K+LVR
Sbjct: 206 QAVRAGKRLVR 216
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 53.7 bits (129), Expect = 6e-09
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
PKP+IA+VNG AIG +CD+ A++ A V G G
Sbjct: 97 PKPVIAMVNGYAIGGGHVLHMMCDLTIAAENARFGQTGPKV------------GSFDGGY 144
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
S RI G A E+ + R+ +A++AL G V+ V ++E+
Sbjct: 145 GSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEK 190
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 53.8 bits (129), Expect = 7e-09
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 25 AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
A D PKP+IA V G AIG + +CD+ AS+ A V G
Sbjct: 89 AIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKV------------GS 136
Query: 85 TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
G + L R+ G A E+ Y R+ AQEAL G V+ V ++++ ++
Sbjct: 137 VDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV 189
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 53.6 bits (129), Expect = 7e-09
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 14/172 (8%)
Query: 24 AAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRG 83
AA DY KP IA + G IG CDI A+ + F P G
Sbjct: 100 AALADYAKPTIACIRGYCIGGGMGIALACDIRIAA------------EDSRFGIPAARLG 147
Query: 84 MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 143
+ + G S A +L YT R+ +A EAL+ G V V +++E L
Sbjct: 148 LGYGYDGVKNLVDLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAAT 207
Query: 144 WAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITAF 194
A P ++ AK+ + +L E + C+ L ++SE++ AF
Sbjct: 208 IAGNAPLTLRAAKRAIA-ELLKDEPERDMAACQALVAACFDSEDYREGRAAF 258
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 53.3 bits (128), Expect = 9e-09
Identities = 39/97 (40%), Positives = 50/97 (51%), Gaps = 15/97 (15%)
Query: 31 KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT-PEG 88
+P+IA VNGPAIG LAL DI AS +A F G+T E
Sbjct: 110 QPVIAAVNGPAIG-GGLCLALAADIRVASSSAY------------FRAAGINNGLTASEL 156
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
S L PR G+S A E++ TGR ++A+EA + G VS
Sbjct: 157 GLSYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVS 193
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 53.2 bits (128), Expect = 1e-08
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
PKP+IA+V G AIG +CD+ A+D AI F G G
Sbjct: 116 PKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAI------------FGQTGPKVGSFDGGY 163
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
S RI G A E+ + R+ +A+EAL G V+ V ++E++
Sbjct: 164 GSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKE 210
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 52.6 bits (127), Expect = 2e-08
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 14/96 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P P+IA VNG A G A LAL CDIV A+ +A F+ QA F G+ P+
Sbjct: 99 PLPVIAAVNGVAAGAGA-NLALACDIVLAARSA------SFI-QA-----FVKIGLVPDS 145
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
+ PR+ G + A L G KL+A++A Q+G +
Sbjct: 146 GGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 51.6 bits (124), Expect = 4e-08
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP-EG 88
PKP+IA VNG A+G DI+ A ++A +F P G+ P G
Sbjct: 98 PKPVIAAVNGYALGGGCELAMHADIIVAGESA------------SFGQPEIKVGLMPGAG 145
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE-IER--DLWPRIHAWA 145
+ L R G A + TG + A EAL G VS V E+ + R +L I A
Sbjct: 146 GTQRLV-RAVGKFKAMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREI---A 201
Query: 146 KLPPQSMIFAKQLVRVPMLSM 166
++PP + Q+ V +
Sbjct: 202 RMPP---LALAQIKEVVLAGA 219
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 51.3 bits (123), Expect = 5e-08
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 19/147 (12%)
Query: 18 TLQKYVAAFIDY---PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQA 73
L++ F+ P P IA VNG A+G + LAL D+ A +A
Sbjct: 80 GLRRIYDGFLAVASCPLPTIAAVNGAAVG-AGLNLALAADVRIAGP------------KA 126
Query: 74 TFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
F F G+ P G ++ + R G VA L G + +A+ A+++G V ++
Sbjct: 127 LFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV--ADDP 184
Query: 134 ERDLWPRIHAWAKLPPQSMIFAKQLVR 160
A P + ++ K +R
Sbjct: 185 VAAALELAAGPAAAPRELVLATKASMR 211
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 51.2 bits (123), Expect = 5e-08
Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 31 KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
KP+IA V G A+G +CDI+ A+DTA F P G+ P
Sbjct: 95 KPVIAAVAGYALGGGCELAMMCDIIIAADTA------------KFGQPEIKLGVLPGMGG 142
Query: 91 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
S R G + A +L TGR ++A EA + G VS V +++
Sbjct: 143 SQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADKL 185
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 50.3 bits (121), Expect = 1e-07
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 26/113 (23%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT-PE- 87
PKP+IA+V G AIG +CD+ A+D AI G T P+
Sbjct: 107 PKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIF-------------------GQTGPKV 147
Query: 88 -----GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 135
G + RI G A E+ + R+ +AQEAL G V+ V ++E+
Sbjct: 148 GSFDGGYGASYLARIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEK 200
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 50.0 bits (120), Expect = 1e-07
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 24/170 (14%)
Query: 31 KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
KPLIA V G A+ LAL CD++ A+ A F P RG+ G
Sbjct: 92 KPLIAAVEGYALA-GGFELALACDLIVAARDA------------KFGLPEVKRGLVAAGG 138
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-----EIERDLWPRIHAW 144
+ PR +A EL TG L A+ A + G V+ + TE + +L RI A
Sbjct: 139 GLLRLPRRIPYHIAMELALTGDMLTAERAHELGLVNRL--TEPGQALDAALELAERIAAN 196
Query: 145 AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ +K++V E R+ + + + S + TAF
Sbjct: 197 G---PLAVAASKRIVVESGDWSEDEMFARQRELIAPVFTSADAKEGATAF 243
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 49.9 bits (119), Expect = 1e-07
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 15/182 (8%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
+L K V A +D P P++ V G +G A +++FA+ A L P VL
Sbjct: 77 SLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDA-KLGQPEIVL------ 129
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
G+ S +L R+ G A +LLY+GR ++ E + G + V E
Sbjct: 130 -----GVFAPAASCLLPERM-GRVAAEDLLYSGRSIDGAEGARIGLANAVAEDPENAALA 183
Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA-NKRECKRLEERWESEEFMNAITAFFN 196
W H AKL S+ FA + R+ M + + E LEE + + + + AF
Sbjct: 184 WFDEHP-AKLSASSLRFAVRAARLGMNERVKAKIAEVEALYLEELMATHDAVEGLNAFLE 242
Query: 197 RK 198
++
Sbjct: 243 KR 244
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 49.7 bits (119), Expect = 1e-07
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 37/148 (25%)
Query: 25 AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
A + KP+IA VNGPA+G +A CDI+ AS+ A VF L
Sbjct: 92 AIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENA------VFGL------------- 132
Query: 85 TPE-------GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
PE G + R+FG+S+ ++ TG ++ A E + G + EE L
Sbjct: 133 -PEIDVGLAGGGKHAM--RLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEE----L 185
Query: 138 WPRI----HAWAKLPPQSMIFAKQLVRV 161
P A P + AK +
Sbjct: 186 MPEAMEIAREIASKSPLATRLAKDALNT 213
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 49.5 bits (118), Expect = 2e-07
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 12/114 (10%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
LQ + A KP+IA ++G IG + CDI + S+ A F
Sbjct: 100 LQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAF------------FSVK 147
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
+T + + P I G A EL TGR+ + EA + G VS VF ++E
Sbjct: 148 EVDLAITADLGTLQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKE 201
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 49.4 bits (118), Expect = 2e-07
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
PKP+IA+V G A+G +CD+ A+D A+ F G G
Sbjct: 161 PKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV------------FGQTGPKVGSFDAGY 208
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 140
S + R+ G A E+ + R A EAL+ G V+ V +E+E + W R
Sbjct: 209 GSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCR 261
>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 48.5 bits (116), Expect = 4e-07
Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 26/198 (13%)
Query: 5 PTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILL 64
P D L + A ++ PKP+IA ++G + CDIV A
Sbjct: 79 PYDAAVARAREMTALLR---AIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGP----- 130
Query: 65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
++TF G+ P S L PR+ + A+ TG K A EA + G V
Sbjct: 131 -------ESTFALTEARIGVAPAIISLTLLPRLSPRA-AARYYLTGEKFGAAEAARIGLV 182
Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER--- 181
+ ++++ + + + PQ + +K L +L R+ + L E
Sbjct: 183 T--AAADDVDAAVAALLADLRRGSPQGLAESKALTTAAVL----AGFDRDAEELTEESAR 236
Query: 182 -WESEEFMNAITAFFNRK 198
+ S+E +TAF ++
Sbjct: 237 LFVSDEAREGMTAFLQKR 254
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 47.5 bits (113), Expect = 6e-07
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
Q+ V A PKP +A + G A+G + TLAL A+D + ++ F
Sbjct: 88 RQQAVDAVAAIPKPTVAAITGYALG-AGLTLAL-----AADWRVSGDN------VKFGAT 135
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
L G+ P G R G S A EL+++GR +A+EAL G + + + D++
Sbjct: 136 EILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLIDEMVAPD----DVY 191
Query: 139 PRIHAWAKL----PPQSMIFAK 156
AWA+ PP ++ AK
Sbjct: 192 DAAAAWARRFLDGPPHALAAAK 213
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 47.0 bits (112), Expect = 1e-06
Identities = 48/181 (26%), Positives = 70/181 (38%), Gaps = 33/181 (18%)
Query: 28 DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
+P P+IA + G +G A CD+ A+ A GM PE
Sbjct: 98 HFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQF-------------------GM-PE 137
Query: 88 ---GCSSV----LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
G SV L PR+ G + LL TG ++A +AL +G V V E++ +
Sbjct: 138 VRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERL 197
Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMNAITAFFNR 197
+ A PQ++ K+L+R L A + E + M AF NR
Sbjct: 198 AASLAGCGPQALRQQKRLLREWEDMPLDVAIDDSVAEFGAAFLTGEPQRHMA---AFLNR 254
Query: 198 K 198
K
Sbjct: 255 K 255
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 47.5 bits (113), Expect = 1e-06
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 26 FIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMT 85
D P P +A +NG A+G C+ V A+D I + A P T G+
Sbjct: 98 LEDLPVPTVAAINGIALG------GGCECVLATDFRIADD------TAKIGLPETKLGIM 145
Query: 86 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
P +V PR+ G A E + +G++ A++AL+ G V V T +++
Sbjct: 146 PGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLG 194
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 46.9 bits (112), Expect = 2e-06
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 31 KPLIAIVNGP--AIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
KPL+ V G +GI L L DIV A+D F RG+ P
Sbjct: 93 KPLVVAVQGYCLTLGIE---LMLAADIVVAADNT------------RFAQLEVQRGILPF 137
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIER--DLWPRIHAW 144
G +++ FP+ G A L TG + +AQEAL+ G V V E++ER +L RI
Sbjct: 138 GGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARA 197
Query: 145 AKL 147
A L
Sbjct: 198 APL 200
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 45.0 bits (107), Expect = 7e-06
Identities = 42/178 (23%), Positives = 68/178 (38%), Gaps = 33/178 (18%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P IA + G +G A A CD+ A+ +A F P T C
Sbjct: 102 RVPTIAAIAGACVGGGAAIAAACDLRIATPSA------------RFGFPI---ARTLGNC 146
Query: 90 SSVL-FPRI---FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145
S+ R+ G + ++L+T R L A+EAL G V+ V ++ R A A
Sbjct: 147 LSMSNLARLVALLGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDA----RADALA 202
Query: 146 K----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITAFFNRK 198
+ P ++ K+ +R L + L + SE+F + AF ++
Sbjct: 203 ELLAAHAPLTLRATKEALR-----RLRREGLPDGDDLIRMCYMSEDFREGVEAFLEKR 255
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 43.7 bits (104), Expect = 2e-05
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 18/100 (18%)
Query: 31 KPLIAIVNGPAI--GISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
KP+IA V+G A+ G+ LAL CD+ A + A+ VF + + P + G T
Sbjct: 94 KPVIAAVSGYAVAGGLE---LALWCDLRVAEEDAVF---GVFCRR--WGVPL-IDGGT-- 142
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
V PR+ G+S A +L+ TGR ++A EAL G + V
Sbjct: 143 ----VRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 43.5 bits (103), Expect = 3e-05
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 21/110 (19%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQ-----ATFHTPFTLRGM 84
PK +IA+V G A G + +CD+ AS H F Q +F
Sbjct: 135 PKVVIAVVPGWAAGGGHSLHVVCDLTLAS-----REHARF-KQTDADVGSFDG------- 181
Query: 85 TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
G S R G A E+ + GR +A+EA G V+ V E+E
Sbjct: 182 ---GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELE 228
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 43.0 bits (102), Expect = 3e-05
Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 23/114 (20%)
Query: 24 AAFIDYPKPLIAIVNG----PAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
A + P+IA V+G IG+ D++ ASD ATF P
Sbjct: 88 RAVYECAVPVIAAVHGFCLGGGIGLVGNA----DVIVASD------------DATFGLPE 131
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
RG G ++ L R+ + L +T + A E +G V V +++
Sbjct: 132 VDRGAL--GAATHL-QRLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQL 182
>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase;
Validated.
Length = 249
Score = 41.9 bits (99), Expect = 6e-05
Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 28/182 (15%)
Query: 14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQ 72
+ T + ++ P P+IA + G AIG L L DIV S ++
Sbjct: 78 KGTFTEANLYSLALNCPIPVIAAMQGHAIG-GGLVLGLYADIVVLSRESV---------- 126
Query: 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYG-FVSGVFTTE 131
+ F G TP ++ + P G ++ E+L T R E + G + E
Sbjct: 127 --YTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFPVLPRAE 184
Query: 132 ------EIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESE 185
E+ R L A+ P S++ K + L E ++E E+ +
Sbjct: 185 VLEKALELARSL-------AEKPRHSLVLLKDHLVADRRRRLPEVIEQEVAMHEKTFHQP 237
Query: 186 EF 187
E
Sbjct: 238 EV 239
>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional.
Length = 243
Score = 41.9 bits (99), Expect = 7e-05
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P P+IA +NGPAIG + LA+ CD+ V +A F P G+ +
Sbjct: 86 PVPVIAAINGPAIG-AGLQLAMACDL------------RVVAPEAYFQFPVAKYGIALDN 132
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
+ + G A +L KL A++AL G + + T D A L
Sbjct: 133 WTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMANRIGTLA----DAQAWAAEIAGLA 188
Query: 149 PQSMIFAK 156
P ++ AK
Sbjct: 189 PLALQHAK 196
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 40.2 bits (95), Expect = 3e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P P+IA + G G +AL DI A+ L +++A + G+ P+
Sbjct: 102 PVPVIAALEGVCFG-GGLQIALGADIRIAAPDTKLS-----IMEAKW-------GLVPDM 148
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
+V + VA EL YT R +A+EAL+ G V+ V
Sbjct: 149 AGTVSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 40.3 bits (95), Expect = 3e-04
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM---TP 86
P+P+IA V+G A +A CD+ A+DTA F P G+ TP
Sbjct: 104 PQPVIARVHGIATAAGCQLVASCDLAVAADTA------------RFAVPGVNIGLFCSTP 151
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 134
V R A E+L TG ++A A ++G V+ V + ++
Sbjct: 152 ----MVALSRNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALD 195
>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
Validated.
Length = 275
Score = 39.6 bits (93), Expect = 4e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 29 YPKPLIAIVNGPAIGISATTLALCDIVFASDTA 61
Y KP IA+VNG G + L CD+ A+D A
Sbjct: 103 YQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 39.2 bits (92), Expect = 5e-04
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 20 QKYVAAF--IDY-PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFH 76
+++ F I Y P+IA ++G +G + I A ++ F
Sbjct: 79 RRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTY------------FA 126
Query: 77 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
P RG+ G SV PR+ G + ++++ TGR +AQE + G
Sbjct: 127 LPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLA 174
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 38.6 bits (90), Expect = 0.001
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 31 KPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
KP+I +NG AI + +AL CDI+ AS A ++ H F G+ P
Sbjct: 100 KPIIGAINGFAI-TAGFEIALACDILVASRGAKFIDT---------HAKF---GIFPSWG 146
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
S RI G + A E+ T L A+ A ++G V+ V E+
Sbjct: 147 LSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESEL 190
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 36.8 bits (86), Expect = 0.005
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 14/109 (12%)
Query: 25 AFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA-ILLNHPVFVLQATFHTPFTLRG 83
D P P +A +NG A+G + D AS A I L P T G
Sbjct: 97 RLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGL-------------PETKLG 143
Query: 84 MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
+ P +V PR+ G A E + G+ + A++AL+ G V V E+
Sbjct: 144 IMPGFGGTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 35.8 bits (83), Expect = 0.008
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALC-DIVFA-SDTAILLNHPVFVLQATFH 76
L+ VA I P P IA V G A + LAL D V D +L V +
Sbjct: 83 LRPLVADLISLPMPTIAAVTGHA-SAAGFILALSHDYVLMRKDRGVLYMSEVDI------ 135
Query: 77 TPFTLRGMT-PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
G+ P+ ++L +I + ++L KL A+EA++ G V + E
Sbjct: 136 ------GLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 35.6 bits (82), Expect = 0.012
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 29 YPKPLIAIVNGPAIGISATTLAL-C-DIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
P P++A ++G +G LAL C V + D +L P L G+ P
Sbjct: 95 LPIPVVAAIHGACLG-GGLELALACHSRVCSDDDKTVLGLPEVQL-----------GLLP 142
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
+ PR+ G S A +++ TG++L A++AL+ G V V
Sbjct: 143 GSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 183
>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 35.3 bits (82), Expect = 0.013
Identities = 33/131 (25%), Positives = 48/131 (36%), Gaps = 22/131 (16%)
Query: 34 IAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSV 92
IA +NG A+G AL CDI A + QA P G+ P +
Sbjct: 99 IAAINGYAMG-GGLECALACDIRIAEE------------QAQMALPEASVGLLPCAGGTQ 145
Query: 93 LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA----KLP 148
P + G A ++ G +++A AL+ G V V E A A
Sbjct: 146 NLPWLVGEGWAKRMILCGERVDAATALRIGLVEEVVEKGEA----REAALALAQKVANQS 201
Query: 149 PQSMIFAKQLV 159
P ++ K L+
Sbjct: 202 PSAVAACKTLI 212
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 35.6 bits (82), Expect = 0.014
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFAS-DTAILLNHPVFVLQATFHTPFTLRGMTPE 87
KP++A ++G +G LAL C A+ D LL P + G+ P
Sbjct: 108 QKPIVAAISGSCLG-GGLELALACHYRIATKDRKTLLG-----------LPEVMLGLLPG 155
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
+ P++ G A +++ TG+K+ A A + G V
Sbjct: 156 AGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIV 192
>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional.
Length = 248
Score = 34.0 bits (78), Expect = 0.031
Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 16/168 (9%)
Query: 31 KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
K I+ +NG G D FAS F T F G+ +
Sbjct: 90 KIYISAINGVTAGACIGIALSTDFKFASR------------DVKFVTAFQRLGLASDTGV 137
Query: 91 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQ 150
+ ++ G E+L G + A+EA ++G + ++ RI + P Q
Sbjct: 138 AYFLLKLTGQR-FYEILVLGGEFTAEEAERWGLLKISEDPLSDAEEMANRI---SNGPFQ 193
Query: 151 SMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
S I AK+++ + + + L E + E ++E+F I++F ++
Sbjct: 194 SYIAAKRMINLVLYNDLEEFLEYESAIQGYLGKTEDFKEGISSFKEKR 241
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 34.1 bits (79), Expect = 0.035
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAI-LLNHPVFVLQATFHTPFTLRGMT 85
P P++A ++G +G LAL C +D +L P L G+
Sbjct: 99 ALPIPVVAAIHGACLG-GGLELALACHYRVCTDDPKTVLGLPEVQL-----------GLL 146
Query: 86 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
P + PR+ G S A +++ TG++L A++AL+ G V
Sbjct: 147 PGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLV 185
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 33.4 bits (76), Expect = 0.063
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALC-DIVFASDTAIL 63
QK++A + KP+IA V+G +G A+ ALC DIV ASD A++
Sbjct: 103 QKFMAIW-RASKPVIAQVHGWCVG-GASDYALCADIVIASDDAVI 145
>gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 401
Score = 32.7 bits (74), Expect = 0.094
Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 13/116 (11%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
+L ++ Y KP +AI+NG +G A+D I F T
Sbjct: 121 SLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTI------------FAT 168
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 133
P T+ G P+ +S + G + L TG KL+ E L G + +EEI
Sbjct: 169 PETIIGFHPDAGASFNLSHLPGR-LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223
>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated.
Length = 265
Score = 32.1 bits (73), Expect = 0.12
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 21/135 (15%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P +A+V G A G + ++ CD+ +D A V + G+ P
Sbjct: 101 KIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRI------------GLAPAVI 148
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAW-AKL- 147
S + I G A T + + + A + G ++ + E+E ++ AW A L
Sbjct: 149 SPFVVKAI-GERAARRYALTAERFDGRRARELGLLAESYPAAELEA----QVEAWIANLL 203
Query: 148 --PPQSMIFAKQLVR 160
PQ++ +K L+R
Sbjct: 204 LNSPQALRASKDLLR 218
>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional.
Length = 268
Score = 31.5 bits (72), Expect = 0.21
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 27 IDYPKPLIAIVNGPAIGISATTLALCDIVFASDTA-ILLNHPVFVLQATFHTPFTLRGMT 85
I+ KP+++ ++GPA+G L DI A+ A I+ H + A H
Sbjct: 103 INCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDH--------- 153
Query: 86 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
+++++P + G + A L ++ +EA + G VS
Sbjct: 154 ----AAIVWPLLCGMAKAKYYLLLCEPVSGEEAERIGLVS 189
>gnl|CDD|233127 TIGR00788, fbt, folate/biopterin transporter. The Folate-Biopterin
Transporter (FBT) Family (TC 2.A.71)The only
functionally characterized members of the family are
from protozoa and include FT1, the major folate
transporter in Leishmania, and BT1, the Leishmania
biopterin/folate transporter. A related protein in
Trypanosoma brucei, ESAGIO, shows weak folate/biopterin
transport activity [Cell envelope, Other].
Length = 468
Score = 31.7 bits (72), Expect = 0.23
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 41 AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI--- 97
A GIS L D + A A L P VL A + P GC S +F +
Sbjct: 345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLAR---------LCPSGCESSVFALLASI 395
Query: 98 --FGNSVASEL 106
G+SV+ L
Sbjct: 396 LHLGSSVSGFL 406
>gnl|CDD|227136 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFASD 59
P I++V GP G A + AL D V
Sbjct: 165 PQISVVMGPCAGGGAYSPALTDFVIMVR 192
>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 407
Score = 30.3 bits (68), Expect = 0.65
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHT 77
L K+V Y KP +AI++G +G A +D + F
Sbjct: 126 NLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTV------------FAH 173
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
P G P+ +S R+ G + L TG+KLN E + G +
Sbjct: 174 PEVQMGFHPDAGASYYLSRLPG-YLGEYLALTGQKLNGVEMIACGLAT 220
>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 29.8 bits (67), Expect = 0.82
Identities = 19/75 (25%), Positives = 29/75 (38%)
Query: 86 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA 145
P+ + + R+ VA LL GR + EA Q G + V + +
Sbjct: 152 PKFWARLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERAL 211
Query: 146 KLPPQSMIFAKQLVR 160
KLP + K L+R
Sbjct: 212 KLPSAARAATKALLR 226
>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease. The Clp protease has an
active site catalytic triad. In E. coli Clp protease,
ser-111, his-136 and asp-185 form the catalytic triad.
Cyanophora parodoxa clpP-B has lost all of these active
site residues and is therefore inactive. Some members
contain one or two large insertions.
Length = 182
Score = 28.3 bits (64), Expect = 2.0
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 113 LNAQEALQYGFVSGVFTTE 131
++A+EA +YG + V +
Sbjct: 164 MSAEEAKEYGLIDEVIESR 182
>gnl|CDD|223895 COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid
metabolism].
Length = 317
Score = 28.0 bits (63), Expect = 2.9
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 34/102 (33%)
Query: 32 PLIAIV-----NGPAIGISATTLALCDIVFASDTAILLNHPVF-VLQATFHTPFTLRGMT 85
P+I+IV +G A+ I + D V L + + V+ +
Sbjct: 190 PIISIVIGEGGSGGALAI-----GVADRVLM------LENSTYSVI-------------S 225
Query: 86 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 127
PEGC+S+L+ A+E + K+ A + + G + G+
Sbjct: 226 PEGCASILWKDASKAKEAAEAM----KITAHDLKELGIIDGI 263
>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 207
Score = 28.0 bits (63), Expect = 3.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 113 LNAQEALQYGFVSGVFTTEE 132
L A+EA YG V + T+
Sbjct: 185 LTAEEAKDYGLVDQIITSYR 204
>gnl|CDD|111933 pfam03092, BT1, BT1 family. Members of this family are
transmembrane proteins. Several are Leishmania putative
proteins that are thought to be pteridine transporters.
One such protein, previously termed (and is still
annotated as) ORFG, was shown to encode a biopterin
transport protein using null mutants, thus being
subsequently renamed BT1. The significant similarity of
ORFG/BT1 to Trypanosoma brucei ESAG10 (a putative
transmembrane protein and another member of this family)
was previously noted. This family also contains five
putative Arabidopsis thaliana proteins of unknown
function. In addition, it also contains two predicted
prokaryotic proteins (from the cyanobacteria
Synechocystis and Synechococcus).
Length = 425
Score = 28.1 bits (63), Expect = 3.5
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 14/71 (19%)
Query: 41 AIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRI--- 97
+GIS L D + +L P VL A + P G S +F +
Sbjct: 305 YLGISDHVYILGDSIILEVLYMLKFMPFLVLLAR---------LCPRGSESTVFALLASI 355
Query: 98 --FGNSVASEL 106
G V+S L
Sbjct: 356 ANLGQIVSSSL 366
>gnl|CDD|181674 PRK09148, PRK09148, aminotransferase; Validated.
Length = 405
Score = 27.7 bits (62), Expect = 3.9
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
Query: 143 AWAKLPPQ-----SMIFAKQLVR 160
AWA +P S+ F+K LV
Sbjct: 324 AWAPIPEAFRHLGSLEFSKLLVE 346
>gnl|CDD|236907 PRK11410, PRK11410, hypothetical protein; Provisional.
Length = 561
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 137 LWPRIHAWAKLPPQSM 152
L P++ A A+ PP ++
Sbjct: 525 LMPKLDALAQYPPYAL 540
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 27.1 bits (61), Expect = 4.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 113 LNAQEALQYGFVSGVFTTEEIERDL 137
+A+EAL+ G V G+ +E+E L
Sbjct: 196 DSAEEALEAGLVDGLAYRDELEARL 220
>gnl|CDD|236338 PRK08788, PRK08788, enoyl-CoA hydratase; Validated.
Length = 287
Score = 27.2 bits (61), Expect = 6.1
Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 21/83 (25%)
Query: 93 LFP---------RIFGNSVASELLYTGRKLNAQEALQYGFV-------SGVFTTEEIERD 136
LFP R G +A EL+ +G+ A+E G V G R
Sbjct: 163 LFPGMGAYSFLARRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRK 222
Query: 137 LWPRIHAWAKLPPQSMIFAKQLV 159
+++ W ++M+ A++ V
Sbjct: 223 SKRKLNGW-----RAMLRARRRV 240
>gnl|CDD|237337 PRK13289, PRK13289, bifunctional nitric oxide
dioxygenase/dihydropteridine reductase 2; Provisional.
Length = 399
Score = 27.1 bits (61), Expect = 6.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 162 PMLSMLHEANKRECKR 177
PMLSML ++ KR
Sbjct: 275 PMLSMLETLAAQQPKR 290
>gnl|CDD|226030 COG3499, COG3499, Phage protein U [General function prediction
only].
Length = 147
Score = 26.7 bits (59), Expect = 6.5
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 90 SSVLFPRIFGNSVASELL----YTGRKLNAQEALQYGFVSGVFTTEEIERD 136
S VL+P G + + L TG L + G + G+F E IE
Sbjct: 53 SGVLYPEETGGESSLDALRALAETGTPLPLIDG--DGAIYGMFVIESIEET 101
>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 200
Score = 26.8 bits (60), Expect = 7.4
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 113 LNAQEALQYGFVSGVFTTEE 132
++A+EA +YG + V + E
Sbjct: 175 MSAEEAKEYGLIDKVIESRE 194
>gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
Length = 379
Score = 26.7 bits (59), Expect = 8.5
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 29 YPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVL-QAT--FHTPFTLRGMT 85
Y K +A+V+G +G A ++ ++ VF +A+ FHT
Sbjct: 104 YKKTQVALVHGLVMGGGAG------LMVPMKFRVVTEKTVFATPEASVGFHT-------- 149
Query: 86 PEGCS-SVLFPRIFGNSVASELLYTGRKLNAQEALQYG 122
C S + R+ G+ + L TG +LN +E + G
Sbjct: 150 --DCGFSYILSRLPGH-LGEYLALTGARLNGKEMVACG 184
>gnl|CDD|130293 TIGR01226, phe_am_lyase, phenylalanine ammonia-lyase. Members of
this family are found, so far, in plants and fungi. From
phenylalanine, this enzyme yields cinnaminic acid, a
precursor of many important plant compounds. This
protein shows extensive homology to histidine
ammonia-lyase, the first enzyme of a histidine
degradation pathway.
Length = 680
Score = 27.1 bits (60), Expect = 8.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 30 PKPLIAIVNGPAIGISATTLALCD 53
PK +AIVNG A+G S +L L +
Sbjct: 227 PKEGLAIVNGTAVGASMASLVLFE 250
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 26.6 bits (59), Expect = 9.3
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLN 65
+ I L + + LI +V +G++ L ++ +D +L++
Sbjct: 9 EEEIDLGDLLGVLRRR-RWLILLVAALVVGLAVLYAFLAPPIYEADAQLLVD 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.408
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,268,398
Number of extensions: 956973
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 849
Number of HSP's successfully gapped: 104
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)