RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5402
(198 letters)
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 193 bits (492), Expect = 5e-62
Identities = 83/198 (41%), Positives = 119/198 (60%), Gaps = 12/198 (6%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
P + + + ++ L+++V FID+PKPLIA+VNGPA+GIS T L L D V+ASD
Sbjct: 92 TDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR 151
Query: 61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
A TFHTPF+ G +PEGCSS FP+I + A+E+L G+KL A EA
Sbjct: 152 A------------TFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACA 199
Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
G V+ VF ++++W R+ A+AKLPP ++ +K+++R LH N EC L+
Sbjct: 200 QGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQG 259
Query: 181 RWESEEFMNAITAFFNRK 198
RW S+E NA+ F +RK
Sbjct: 260 RWLSDECTNAVVNFLSRK 277
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 184 bits (469), Expect = 1e-58
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
AFI + K LI +NGPAIG+SA +ALCDIV++ + PF
Sbjct: 102 VYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-----------VYLLYPF 150
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF-----TTEEIE 134
G+ EG ++V P FG + E L + + GF+S F E
Sbjct: 151 ANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFN 210
Query: 135 RDLWPRIHAW-AKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
+ + L S + K+L++ + ++AN E + W E +
Sbjct: 211 AKVLEELREKVKGLYLPSCLGMKKLLKSNHIDAFNKANSVEVNESLKYWVDGEPLKRFRQ 270
Query: 194 FFNRK 198
+++
Sbjct: 271 LGSKQ 275
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 165 bits (421), Expect = 1e-51
Identities = 75/198 (37%), Positives = 113/198 (57%), Gaps = 12/198 (6%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
+ D E T + ++ +V FI + KP+I VNGPAIG+ A+ L LCD+V+A++
Sbjct: 72 IRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK 131
Query: 61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA
Sbjct: 132 A------------WFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACG 179
Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
G VS VF +++ RI A P + +K LVR M L +AN+REC+ L++
Sbjct: 180 KGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKK 239
Query: 181 RWESEEFMNAITAFFNRK 198
W S + M+++ + RK
Sbjct: 240 IWGSAQGMDSMLKYLQRK 257
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 166 bits (423), Expect = 2e-51
Identities = 68/206 (33%), Positives = 109/206 (52%), Gaps = 20/206 (9%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
+ + + + T++ +V FI + KP++ VNGPAIG+ A+ L LCD+V+A++
Sbjct: 90 VKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK 149
Query: 61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA
Sbjct: 150 A------------WFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACA 197
Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
G VS VF T +++ +I A P + K LVR + L +AN+REC+ L +
Sbjct: 198 KGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRK 257
Query: 181 RWESEEFMNAI--------TAFFNRK 198
W S + + ++ A F +
Sbjct: 258 IWSSAQGIESMLKIPLLGYKAAFPPR 283
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 127 bits (321), Expect = 1e-36
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 23/185 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+ + A +PKPLI VNG +GI AT + D+ F S TA P
Sbjct: 89 RGLIKALAGFPKPLICAVNGLGVGIGAT-ILGYADLAFMSSTA------------RLKCP 135
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
FT G+ PE SS L P++ G A+ LL + ++A+EAL+ G V + + EE L
Sbjct: 136 FTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEE----LL 191
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P A+ P S++ K + P + + A+ RE E ++ A+ F
Sbjct: 192 PEARRHAEILAAKPISSLMAVKHTMVEPNRAQIAAASARENAHFAELMGAQANAAALADF 251
Query: 195 FN-RK 198
+ R+
Sbjct: 252 TDRRR 256
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 127 bits (322), Expect = 2e-36
Identities = 55/184 (29%), Positives = 78/184 (42%), Gaps = 23/184 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
++ KP+IA +NGP +GI T AL CD+ FA+ A F
Sbjct: 120 ERPPHFVTMLRKPVIAAINGPCVGIGLT-QALMCDVRFAAAGA------------KFAAV 166
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
F RG+ E S + PR+ +VA +LL +GR A+EA Q G V V T E+ L
Sbjct: 167 FARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ----LM 222
Query: 139 PRIHAWAK-----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
PR +A+ P SM K+ V + EA L E + + I +
Sbjct: 223 PRALEYAEDIARYCSPSSMAVIKRQVYGDATRDVVEATSHAEVLLREAMPRPDVIEGIVS 282
Query: 194 FFNR 197
F +
Sbjct: 283 FLEK 286
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 126 bits (320), Expect = 2e-36
Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+ + KPLI V G AIGI T+ L D+VFA +TA F P
Sbjct: 89 FVLLKSAARLSKPLIIAVKGVAIGI-GVTILLQADLVFADNTA------------LFQIP 135
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
F G++PEG +S L + G A+ELL+T +K NA+ ALQ G V+ + D +
Sbjct: 136 FVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIVE------DAY 189
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
A A+ LP S+ K L++ + + E E + +R +S E + A+ AF
Sbjct: 190 ATAQATAQHLTALPLASLKQTKALMKHDL-DQIIECIDHEAEIFMQRVQSPEMLEAVQAF 248
Query: 195 FNRK 198
++
Sbjct: 249 MQKR 252
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 113 bits (286), Expect = 2e-31
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 25/196 (12%)
Query: 10 NEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPV 68
+ + A + P+IA VNG AIGI T LAL DI ++
Sbjct: 78 AAPRNPDFSASPVQPAAFELRTPVIAAVNGHAIGIGMT-LALHADIRILAEEG------- 129
Query: 69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
+ P G+ P+ + PR+ G +VA+ELL TG +AQ A++ G +
Sbjct: 130 -----RYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCL 184
Query: 129 TTEEIERDLWPRIHAWA-----KLPPQSMIFAKQLVRVPMLSMLH--EANKRECKRLEER 181
+ + A + P+S K+L+ ++ + E RE
Sbjct: 185 PAGK----VLGAALRMAHDIATNVAPESAALTKRLLWDAQMTGMSAAEVAARETADHLRL 240
Query: 182 WESEEFMNAITAFFNR 197
S++ AF +
Sbjct: 241 MGSQDAAEGPRAFIDG 256
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 111 bits (280), Expect = 1e-30
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 14/180 (7%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
+ V A PKP+IA V+G A+G + LAL CD+V A+ + F
Sbjct: 81 ANRVVRAITSLPKPVIAGVHGAAVGFGCS-LALACDLVVAAPAS------------YFQL 127
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
FT G+ P+G +S L P + G + S + T K++A A ++G +S + + +E E L
Sbjct: 128 AFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYESVL 187
Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
+ + + P + + K+ + L+ L E + E+ +F AF R
Sbjct: 188 TDVLRSVSGGPTLAFGWTKRALAAATLAELEPVQAIEAEGQLALVETADFREGARAFRER 247
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 109 bits (274), Expect = 9e-30
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 25/200 (12%)
Query: 6 TDLINEDTDTSITLQKY---VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTA 61
T+ + D L++Y V A KPL+ VNG A G + LAL D+ A+ A
Sbjct: 64 TEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMS-LALWGDLRLAAVGA 122
Query: 62 ILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQY 121
+F T F G+ P+ S L PR+ G + A ELL +L+A+EAL
Sbjct: 123 ------------SFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALAL 170
Query: 122 GFVSGVFTTEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKR 177
G V V E+ L + AK P ++ K+L+ L EA E
Sbjct: 171 GLVHRVVPAEK----LMEEALSLAKELAQGPTRAYALTKKLLLETYRLSLTEALALEAVL 226
Query: 178 LEERWESEEFMNAITAFFNR 197
+ ++++ + AF +
Sbjct: 227 QGQAGQTQDHEEGVRAFREK 246
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 107 bits (269), Expect = 8e-29
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 15/177 (8%)
Query: 23 VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTL 81
V A + P P+IA ++G A G A LAL D A + F FT
Sbjct: 106 VRAVRECPFPVIAALHGVAAGAGAV-LALAADFRVADPST------------RFAFLFTR 152
Query: 82 RGMTPEGC-SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 140
G++ ++ L PR+ G A+ LL G + A EA + G +S + +
Sbjct: 153 VGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTL 212
Query: 141 IHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
A P + K L+ + L A + + E++ AF +
Sbjct: 213 ARRLADGPALAHAQTKALLTAELDMPLAAAVELDASTQALLMTGEDYAEFHAAFTEK 269
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 106 bits (268), Expect = 1e-28
Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 22/186 (11%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
L V PK +A++NG A G + L CD A A F
Sbjct: 90 LNHCVLEIFTSPKVTVALINGYAYGGGFN-MMLACDRRIALRRA------------KFLE 136
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
F G++P+ +S PRI G LL G+ ++EAL+ G + + ++ +L
Sbjct: 137 NFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQ---EL 193
Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
R+ + K ++ K+L++ L + ++E + L ++ E + A
Sbjct: 194 QERVKNYLKAVSEGYVPAIAATKKLLKGKAAEELKQQLEQETEELVALFKQTEIKKRLEA 253
Query: 194 FFN-RK 198
Sbjct: 254 LVEGHH 259
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 106 bits (268), Expect = 1e-28
Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 23/183 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+ V ++ KP+++ + GPA+G +AL DI AS TA
Sbjct: 97 RDLVLNLVNLDKPVVSAIRGPAVGAGLV-VALLADISVASATA------------KIIDG 143
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
T G+ +++ +P + G + A L T L+ +EA + G VS +E +
Sbjct: 144 HTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDE----VL 199
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P A+ ++ + K+ + M + + + + A
Sbjct: 200 PTATRLAENLAQGAQNAIRWTKRSLNH-WYRMFGPTFETSLGLEFLGFTGPDVQEGLAAH 258
Query: 195 FNR 197
+
Sbjct: 259 RQK 261
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 105 bits (265), Expect = 1e-28
Identities = 39/190 (20%), Positives = 71/190 (37%), Gaps = 22/190 (11%)
Query: 11 EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
T + + +D P+IA + G + G L L D V S +
Sbjct: 71 RKTRGEVEVLDLSGLILDCEIPIIAAMQGHSFGGGLL-LGLYADFVVFSQES-------- 121
Query: 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
+ T F G TP G +S++ G+ +A E++YTG +E + G V +
Sbjct: 122 ----VYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVS 177
Query: 130 TEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESE 185
++ + + P S++ KQ + + + EA K+E + + +
Sbjct: 178 RQD----VLNYAQQLGQKIAKSPRLSLVALKQHLSADIKAKFPEAIKKELEIHQVTFNQP 233
Query: 186 EFMNAITAFF 195
E + I F
Sbjct: 234 EIASRIQQEF 243
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 103 bits (260), Expect = 1e-27
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 26/196 (13%)
Query: 11 EDTDTSITLQKY----VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLN 65
E+ D L+ + A KP++A VNG A G + LAL CD S+ A
Sbjct: 71 EEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMS-LALACDFRLLSEKA---- 125
Query: 66 HPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 125
+F F G+ P+ PR+ G + A EL G K+ A+EA G +
Sbjct: 126 --------SFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLAT 177
Query: 126 GVFTTEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER 181
V + + +A+ +P +++ K+L+R + +RE +
Sbjct: 178 KVIPLSD----WEEEVKQFAERLSAMPTKAIGLIKRLLRESEETTFDRYLEREAECQRIA 233
Query: 182 WESEEFMNAITAFFNR 197
+ + + AFF +
Sbjct: 234 GLTSDHREGVKAFFEK 249
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 104 bits (262), Expect = 2e-27
Identities = 29/180 (16%), Positives = 59/180 (32%), Gaps = 26/180 (14%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+ A+ + KP + ++G + T +AL D V A+ A P
Sbjct: 147 VRGFASLMHCDKPTVVKIHGYCVAG-GTDIALHADQVIAAADA------------KIGYP 193
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
P ++ L+ G+ A LL+TG + +A ++G +++
Sbjct: 194 PMRVWGVP---AAGLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLD---- 246
Query: 139 PRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEER-WESEEFMNAITA 193
R +P +I AK +L+ ++ + + E +
Sbjct: 247 ARTERLVERIAAMPVNQLIMAKLACNTALLNQGVATSQMVSTVFDGIARHTPEGHAFVAT 306
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 102 bits (257), Expect = 4e-27
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 23/182 (12%)
Query: 23 VAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTL 81
+ I +P++A +NG A G ++L D+ +D+A F +
Sbjct: 93 IHKIIRVKRPVLAAINGVAAGGGLG-ISLASDMAICADSA------------KFVCAWHT 139
Query: 82 RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 141
G+ + +S RI G A EL+ T R L +EA +G VS V+ +E
Sbjct: 140 IGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE----FREVA 195
Query: 142 HAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN- 196
A+ P + AK+ + + E + E + + FM +T F +
Sbjct: 196 WKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCLTRFLDG 255
Query: 197 RK 198
+
Sbjct: 256 HR 257
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 102 bits (256), Expect = 5e-27
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 22/156 (14%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+K + +D P+I+ VNG A+ + L DI+ AS+ VF P
Sbjct: 107 KKVLQNLLDIEVPVISAVNGAALL--HSEYILTTDIILASENT------VFQDM-----P 153
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
G+ P +L+P G L+T KL AQ+A + V V + L
Sbjct: 154 HLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQSK----LM 209
Query: 139 PRIHAWA----KLPPQSMIFAKQLVRVPMLSMLHEA 170
R A K P ++ + + + + +++E
Sbjct: 210 ERAWEIARTLAKQPTLNLRYTRVALTQRLKRLVNEG 245
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 100 bits (250), Expect = 4e-26
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 22/156 (14%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
Q+ + + P+IA VNGP A + + DIV A+++A P
Sbjct: 98 QRLLNNLLSIEVPVIAAVNGPVTN--APEIPVMSDIVLAAESATFQ-----------DGP 144
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
G+ P + V++P + G++ L TG++L+A+ AL YG V+ V + +E L
Sbjct: 145 HFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQE----LL 200
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEA 170
PR A+ P + +A++++ + ++
Sbjct: 201 PRAWELARGIAEKPLLARRYARKVLTRQLRRVMEAD 236
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 99 bits (250), Expect = 7e-26
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 27/188 (14%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
L + + +P+IA +NG AIG LAL CD+ AS A F
Sbjct: 112 LDEVILTLRRMHQPVIAAINGAAIGGGLC-LALACDVRVASQDA------------YFRA 158
Query: 78 PFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 136
G+T E S L PR G S AS+++ TGR ++A EA + G VS +E
Sbjct: 159 AGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASES---- 214
Query: 137 LWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMN 189
L +A + + K+ + + + E++ + + L + + ++ F
Sbjct: 215 LLEECYAIGERIAGFSRPGIELTKRTIWSGLDAASLESHMHQ-EGLGQLYVRLLTDNFEE 273
Query: 190 AITAFFNR 197
A A +
Sbjct: 274 ATAARKEK 281
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 98.0 bits (245), Expect = 2e-25
Identities = 36/198 (18%), Positives = 69/198 (34%), Gaps = 23/198 (11%)
Query: 4 NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAIL 63
+P+ + + + + + A ++ P+IA ++G + CDI A +
Sbjct: 82 SPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRS-- 139
Query: 64 LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
+F G+ P S L P++ A+ TG K +A+ A + G
Sbjct: 140 ----------SFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEEIGL 188
Query: 124 VSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179
++ DL I PQ + +K L +L +R +
Sbjct: 189 IT------MAAEDLDAAIDQLVTDVGRGSPQGLAASKALTTAAVLERFDRDAERLAEESA 242
Query: 180 ERWESEEFMNAITAFFNR 197
+ S+E + AF +
Sbjct: 243 RLFVSDEAREGMLAFLEK 260
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 98.0 bits (245), Expect = 3e-25
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 24/183 (13%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
++ V P++A VNGPA+G+ + L DIV+ ++ A P
Sbjct: 112 REIVLGMARCRIPVVAAVNGPAVGLGCS-LVALSDIVYIAENA------------YLADP 158
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
G+ + +P +A E TG +++AQ A++ G + V D
Sbjct: 159 HVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA------DDPV 212
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
A AK LP Q++ K+++ + + + + + + +E+F + +T
Sbjct: 213 AEAIACAKKILELPQQAVESTKRVLNIHLERAVLASLDYALSAESQSFVTEDFRSIVTKL 272
Query: 195 FNR 197
++
Sbjct: 273 ADK 275
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 97.6 bits (244), Expect = 4e-25
Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 23/183 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
+ V +++P+P++A V A+G LAL DI
Sbjct: 94 RDLVLGPLNFPRPVVAAVEKVAVGAGLA-LALAADIAVVGKGT------------RLLDG 140
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
G+ + +L+P + G + A L L +EA + G V+ E+ ++
Sbjct: 141 HLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEK----VY 196
Query: 139 PRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
+ A+ P +++ K + S L + + +E + A
Sbjct: 197 EKALEVAERLAQGPKEALHHTKHALNHWYRSFL-PHFELSLALEFLGFSGKELEEGLKAL 255
Query: 195 FNR 197
+
Sbjct: 256 KEK 258
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 94.6 bits (236), Expect = 4e-24
Identities = 26/168 (15%), Positives = 52/168 (30%), Gaps = 16/168 (9%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P I+ V G ++ DI A TA +F L G+ P C
Sbjct: 100 PYVTISHVRGKVNAGGLGFVSATDIAIADQTA------------SFSLSELLFGLYP-AC 146
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPP 149
R G A + + ++ QEA ++G + ++ + +L
Sbjct: 147 VLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESDVLLRKH--LLRLRRLNK 204
Query: 150 QSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
+ + KQ + + + A ++ + + I +
Sbjct: 205 KGIAHYKQFMSS-LDHQVSRAKATALTANQDMFSDPQNQMGIIRYVET 251
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 93.4 bits (233), Expect = 6e-24
Identities = 27/159 (16%), Positives = 44/159 (27%), Gaps = 20/159 (12%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
+ + YPKP++ G AI + A L D A+
Sbjct: 85 FELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYN------------VQANE 132
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
GMT + + S + + + AL GF+ + E +
Sbjct: 133 VAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEV----VLS 188
Query: 140 RIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
R A+ L Q+ K R L +
Sbjct: 189 RAEEAAREFAGLNQQAHNATKLRARAEALKAIRAGIDGI 227
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 93.7 bits (234), Expect = 7e-24
Identities = 49/204 (24%), Positives = 73/204 (35%), Gaps = 24/204 (11%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASD 59
+ E+ S++L + YPKP +A VNGPA+ LAL CD+V +
Sbjct: 65 LERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVA-GGAGLALACDLVVMDE 123
Query: 60 TAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEAL 119
A G SV+ R G A +LL TGR + A+EA
Sbjct: 124 EA------------RLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAK 170
Query: 120 QYGFVSGVFTTEEIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKREC 175
G V+ + + A A+ P S+ K+L+ L + +
Sbjct: 171 ALGLVNRIAPPGK----ALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLEDGFRLAA 226
Query: 176 KRLEERWESEEFMNAITAFFN-RK 198
E+ + I AFF R
Sbjct: 227 LANAWVRETGDLAEGIRAFFEKRP 250
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 93.4 bits (233), Expect = 1e-23
Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 32/184 (17%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
++ + P +A+ +G G + L C + + A F
Sbjct: 87 IEMLLQRVAGSPSLTLALAHGRNFG-AGVDLFAACKWRYCTPEA------------GFRM 133
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
P G+ + F I G A +L + R +A EA + GFV +
Sbjct: 134 PGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQ----W 186
Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
I A A+ L P + +++R A L F I
Sbjct: 187 PALIDAAAEAATALDPATRATLHRVLRDDHDDADLAA-------LARSAAQPGFKARIRD 239
Query: 194 FFNR 197
+ +
Sbjct: 240 YLAQ 243
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 90.3 bits (225), Expect = 2e-22
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 21/182 (11%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
L + A P P++ +NGPAIG LA+ CD+ + A F
Sbjct: 96 LIELHKAMDASPMPVVGAINGPAIGAGLQ-LAMQCDLRVVAPDA------------FFQF 142
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
P + G+ + S + G+ A +L + KL A+ AL G + + T + +
Sbjct: 143 PTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLADA-QAW 201
Query: 138 WPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN- 196
I A+L P ++ AK+++ + EA + ++ W S++ + A A
Sbjct: 202 AAEI---ARLAPLAIQHAKRVLNDDG--AIEEAWPAHKELFDKAWGSQDVIEAQVARMEK 256
Query: 197 RK 198
R
Sbjct: 257 RP 258
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 88.3 bits (220), Expect = 1e-21
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 20/169 (11%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KPL+ V+G + + LAL DIV A +TA TF RG+ P G
Sbjct: 102 SKPLLVAVHGKVLTL-GIELALAADIVIADETA------------TFAQLEVNRGIYPFG 148
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
+++ FPR G A + T +A EA + G V + E + I A
Sbjct: 149 GATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTI---A 205
Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
+ P + + R+ + A ++ + E + SE+ + AF
Sbjct: 206 RQAPLGVQATLRNARLAVREGDAAAEEQLVPTVRELFTSEDATLGVQAF 254
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 88.0 bits (219), Expect = 1e-21
Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 17/172 (9%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PKP IA+V G A G LA CDI AS +A F G+ P
Sbjct: 99 PKPTIAMVQGAAFG-GGAGLAAACDIAIASTSA------------RFCFSEVKLGLIPAV 145
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLP 148
S + R G A L + +A A V + + +
Sbjct: 146 ISPYV-VRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNA 204
Query: 149 PQSMIFAKQLV-RVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P+++ +KQL V + E + + + S+E + AF N
Sbjct: 205 PEAVKNSKQLAQYVANKKIDEELVRYTASLIAHKRVSDEGQEGLKAFLNKEI 256
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 87.2 bits (217), Expect = 2e-21
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 23/186 (12%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
L + D KP+I +NG A+ LAL CDI+ AS+ A F
Sbjct: 81 LPDISPKWPDMTKPVIGAINGAAVT-GGLELALYCDILIASENA------------KFAD 127
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE--- 134
G+ P SV P+ G +A + TG L+AQ+AL+ G V+ V +++
Sbjct: 128 THARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAA 187
Query: 135 RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW---ESEEFMNAI 191
R + I +++ A E + + ++ +
Sbjct: 188 RRVAASI---VGNNQKAVRALLDSYHRIDALQTGGALWAEAEAARQWMRSTSGDDIAASR 244
Query: 192 TAFFNR 197
+ R
Sbjct: 245 ASVIER 250
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 86.4 bits (215), Expect = 3e-21
Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 23/185 (12%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHT 77
+ A ++ KP IA V+G AIG AL D + TA F
Sbjct: 83 VIDLYQAVLNVNKPTIAAVDGYAIG-MGFQFALMFDQRLMASTA------------NFVM 129
Query: 78 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 137
P G+ +++L G S E++Y + L+A + Y V+ V + L
Sbjct: 130 PELKHGIGCSVGAAIL-GFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSA----L 184
Query: 138 WPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITA 193
A P + I K+ V P + +L + + +++ +
Sbjct: 185 LDAAITQAHVMASYPASAFINTKRAVNKPFIHLLEQTRDASKAVHKAAFQARDAQGHFKN 244
Query: 194 FFNRK 198
+K
Sbjct: 245 VLGKK 249
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 85.1 bits (211), Expect = 2e-20
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 21/145 (14%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
+ PKP IA+V G A +A CD+ +AS A F P
Sbjct: 94 SALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAA------------RFCLPG 141
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 139
G +V R+ G +E+ TG +A AL G ++ + L
Sbjct: 142 VQNGGFC-TTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAA----LAT 196
Query: 140 RIHAWAKL----PPQSMIFAKQLVR 160
+ A + + +
Sbjct: 197 HVADLAGALAARNQAPLRRGLETLN 221
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 85.0 bits (211), Expect = 2e-20
Identities = 37/177 (20%), Positives = 64/177 (36%), Gaps = 25/177 (14%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
+ PKP IA V G I L CD++ A++ A+ F P L +
Sbjct: 115 NVPKPSIAAVQGRCIS-GGLLLCWPCDLIIAAEDAL------------FSDPVVLMDIGG 161
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
G A E+L+TGR + A+E Q G V+ V + ++ A A
Sbjct: 162 VE--YHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDRLD----AETRALAG 215
Query: 147 ----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES-EEFMNAITAFFNRK 198
+PP ++ AK+ V + A + + + ++ + +
Sbjct: 216 EIAKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGHGNAMSVSGWPVLVDIE 272
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 84.2 bits (209), Expect = 4e-20
Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 25/182 (13%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTP 78
Q+ F KP++ VNG G + DIV AS+ ATF P
Sbjct: 100 QEGTPPFRTMAKPVLTAVNGICCG-AGMDWVTTTDIVIASEQ------------ATFFDP 146
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK--LNAQEALQYGFVSGVFTTEEIERD 136
G+ V R+ S+A + G+ ++AQ A + G +S + +
Sbjct: 147 HVSIGLVAGR-ELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEHDR---- 201
Query: 137 LWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAIT 192
L R H A + P ++ + + + LHEA E +E+
Sbjct: 202 LLERAHEIADIVNSNAPLAVRGTRLAILKGLNVPLHEAEILAETFRERVLRTEDAAEGPR 261
Query: 193 AF 194
AF
Sbjct: 262 AF 263
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 83.0 bits (206), Expect = 5e-20
Identities = 26/165 (15%), Positives = 47/165 (28%), Gaps = 13/165 (7%)
Query: 11 EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
+ + +P P+I G A+ L L D
Sbjct: 75 AAINLVAQGSTLARRMLSHPFPIIVACPGHAVA-KGAFLLLSADYRIGVAG--------- 124
Query: 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
+ GMT L S + + + + A+ GF+ V +
Sbjct: 125 --PFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVS 182
Query: 130 TEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRE 174
EE++ K+ + K VR +L L A +++
Sbjct: 183 VEELQGAALAVAAQLKKINMNAHKKTKLKVRKGLLDTLDAAIEQD 227
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 85.3 bits (211), Expect = 6e-20
Identities = 36/174 (20%), Positives = 63/174 (36%), Gaps = 23/174 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP +A V+G AIG L L D V AS A F L P G+ P G
Sbjct: 284 EKPWVAAVDGFAIG-GGAQLLLVFDRVLASSDA------YFSL------PAAKEGIIP-G 329
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA-KL 147
+++ R G V+ +++ GR++ A+E V V +E L I +L
Sbjct: 330 AANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE----LDAAIERSLTRL 385
Query: 148 PPQSMIFAKQLVRV--PMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
+++ ++++ + R + ++ + F
Sbjct: 386 DGDAVLANRRMLNLADESPDGFRAYMAEFALMQALRLYGHDVIDKVGRFGGRPP 439
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 83.8 bits (208), Expect = 7e-20
Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 22/170 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KPLIA V GPAI T + DI A+++A F + P G
Sbjct: 115 KKPLIAAVEGPAIA-GGTEILQGTDIRVAAESA------------KFGISEAKWSLYPMG 161
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
S+V R +VA +LL TGR + A EA + G V V + + A++
Sbjct: 162 GSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQ----ALTKALEIAEII 217
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ + +R +EA K + + E + S++ AF
Sbjct: 218 AANGPLAVQAILRTIRETEGMHENEAFKIDTRIGIEVFLSDDAKEGPQAF 267
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 83.3 bits (206), Expect = 2e-19
Identities = 39/174 (22%), Positives = 59/174 (33%), Gaps = 20/174 (11%)
Query: 28 DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
PK +I +VNG A G + +CD+ AS A F G
Sbjct: 165 FMPKVVICLVNGWAAGGGHSLHVVCDLTLASRE-----------YARFKQTDADVGSFDG 213
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK- 146
G S R G A E+ + GR A++ Q G V+ V E+E WA
Sbjct: 214 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELE----TVGLQWAAE 269
Query: 147 ---LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
PQ+ K + + L + + ++E + AF +
Sbjct: 270 INAKSPQAQRMLKFAFNL-LDDGLVGQQLFAGEATRLAYMTDEAVEGRDAFLQK 322
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 82.2 bits (204), Expect = 2e-19
Identities = 43/169 (25%), Positives = 61/169 (36%), Gaps = 20/169 (11%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KPL+ V G L L DI A+ F LRG+ P G
Sbjct: 105 SKPLVVAVQGTCWTA-GIELMLNADIAVAARGT------------RFAHLEVLRGIPPLG 151
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
S+V FPR G + A + TG + +A EAL+ ++ V E + RI A
Sbjct: 152 GSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERI---A 208
Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
+ P ++ A Q A R + L SE+ + A
Sbjct: 209 RAAPLAVRAALQSAFQGRDEGDDAALSRVNESLAALIGSEDVREGVLAM 257
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 80.6 bits (200), Expect = 6e-19
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 22/170 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP+IA V G A+ T L L CD+V A +A F P RG+
Sbjct: 93 RKPIIAAVEGFALA-GGTELVLSCDLVVAGRSA------------KFGIPEVKRGLVAGA 139
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
+ P VA EL TG A++A +YGF++ + + A
Sbjct: 140 GGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQ----ALDTALELAAKI 195
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ K+++ EA ++ + L + SE+ AF
Sbjct: 196 TANGPLAVAATKRIIIESASWAPEEAFAKQGEILMPIFVSEDAKEGAKAF 245
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 80.7 bits (200), Expect = 7e-19
Identities = 38/169 (22%), Positives = 59/169 (34%), Gaps = 22/169 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP+IA ++G A+ LAL CD+ + A G+
Sbjct: 101 SKPVIAAISGHAVA-GGIELALWCDLRVVEEDA------------VLGVFCRRWGVPLID 147
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWA 145
++ PR+ G+S A +L+ TGR ++A EAL G V+ V + L I A
Sbjct: 148 GGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEI---A 204
Query: 146 KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P Q + + A E + E + F
Sbjct: 205 AFPQQCVRADRDSAIAQWGMAEEAALDNE--FGSIERVATEALEGAGRF 251
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 80.3 bits (199), Expect = 9e-19
Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 22/170 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KPLIA V G A+ T LAL D++ A+ + F P RG+ G
Sbjct: 102 AKPLIAAVEGYALA-GGTELALATDLIVAARDS------------AFGIPEVKRGLVAGG 148
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
+ P ++A EL TG L+A+ A G V+ + A A+
Sbjct: 149 GGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGA----ALDAAIALAEKI 204
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ K+++ L ++ K L + S + AF
Sbjct: 205 TANGPLAVAATKRIITESRGWSLDTRFAQQMKILFPIFTSNDAKEGAIAF 254
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 79.5 bits (197), Expect = 2e-18
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 25/173 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP IA VNG A+G T LAL D+V A + A F P RG+
Sbjct: 101 DKPTIAAVNGTALG-GGTELALASDLVVADERA------------QFGLPEVKRGLIAAA 147
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
VA LL TG L+A A +G ++ V + A A
Sbjct: 148 GGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGS----VLDAALALASAI 203
Query: 148 ---PPQSMIFAKQLVRVPMLSM---LHEANKRECKRLEERWESEEFMNAITAF 194
P S+ +K++ + R + + +SE+ AF
Sbjct: 204 TVNAPLSVQASKRIAYGVDDGVVVGDEPGWDRTMREMRALLKSEDAKEGPRAF 256
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 78.7 bits (195), Expect = 3e-18
Identities = 30/172 (17%), Positives = 52/172 (30%), Gaps = 15/172 (8%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVL-QATFHTPFTLRGMTPE 87
L++ +NG +AL CD +D + + T G+
Sbjct: 97 NLVLVSAINGACPA-GGCLVALTCDYRILADNP------RYCIGL-----NETQLGIIAP 144
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
G+ A L G EALQ G V V E+++ I W +
Sbjct: 145 FWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAI 204
Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P + K ++R S L + + + ++ + K
Sbjct: 205 PDHARQLTKAMMRKATASRLVTQRDADVQNFVSFISKDSIQKSLQMYLERLK 256
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 78.3 bits (194), Expect = 5e-18
Identities = 41/170 (24%), Positives = 60/170 (35%), Gaps = 22/170 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KPLIA VNG +G + DI + + A TF P RG+ P
Sbjct: 102 TKPLIAAVNGACLG-GGCEMLQQTDIRVSDEHA------------TFGLPEVQRGLVPGA 148
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
S V R + A E++ TG L A EA +G V V + + A
Sbjct: 149 GSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGT----ALDKARSLADRI 204
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAF 194
P ++ AK+ + +A E + S + + AF
Sbjct: 205 VRNGPLAVRNAKEAIVRSGWLAEEDARAIEARLTRPVITSADAREGLAAF 254
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 78.4 bits (194), Expect = 5e-18
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 32/196 (16%)
Query: 14 DTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQ 72
D QK PKP+IA ++G IG L CDI + + A
Sbjct: 91 DLISRYQKTFTVIEKCPKPVIAAIHGGCIG-GGVDLISACDIRYCTQDA----------- 138
Query: 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
F G+ + + P++ GN S+ +EL +T RK+ A EAL G VS VF +
Sbjct: 139 -FFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDK 197
Query: 132 EIERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERW----- 182
+ + A A P ++ +K + + E+ W
Sbjct: 198 D---VMLNAAFALAADISSKSPVAVQGSKINLIYSRDHSVDESL-----DYMATWNMSML 249
Query: 183 ESEEFMNAITAFFNRK 198
++++ + ++ A +K
Sbjct: 250 QTQDIIKSVQAAMEKK 265
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 78.0 bits (193), Expect = 9e-18
Identities = 30/157 (19%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 29 YPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP- 86
Y KP IA+VNG G + + CD+ +D A F G+ P
Sbjct: 105 YAKPTIAMVNGWCFG-GGFSPLVACDLAICADEAT------------FGLSEINWGIPPG 151
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
S + G+ + + TG+ Q+A + G V+ + L A+
Sbjct: 152 NLVSKAM-ADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ----LREVTIELAR 206
Query: 147 ----LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLE 179
P + AK + + +L+
Sbjct: 207 NLLEKNPVVLRAAKHGFKRCRELTWEQNEDYLYAKLD 243
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 77.3 bits (191), Expect = 1e-17
Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 22/174 (12%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P P+IA V+G A +A+CD+ A+ A F G+
Sbjct: 119 PAPVIARVHGIATAAGCQLVAMCDLAVATRDA------------RFAVSGINVGLFC-ST 165
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL-- 147
V R G A E+L TG ++A +A G V+ V + L I A
Sbjct: 166 PGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKA----LDDEIEAMVSKIV 221
Query: 148 --PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P ++ K L + + + A + + ++AF R+
Sbjct: 222 AKPRAAVAMGKALFYRQIETDIESAYADAGTTMACNMMDPSALEGVSAFLEKRR 275
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 77.2 bits (191), Expect = 2e-17
Identities = 34/175 (19%), Positives = 58/175 (33%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P+IA + G IG LA I A +A + P RG+ G
Sbjct: 106 RVPVIAALKGAVIG-GGLELACAAHIRVAEASAY------------YALPEGSRGIFVGG 152
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
SV PR+ G + ++++ TGR +A E + +GF + + +
Sbjct: 153 GGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGS----AYDKALELGNRV 208
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P + Q + + + E +E I AF + +
Sbjct: 209 AQNAPLTNFAVLQALPMIAEANPQTGLLMESLMATVAQSDQEAKTRIRAFLDHKT 263
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 74.1 bits (183), Expect = 2e-16
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 19/175 (10%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P P IA ++G A+G LAL CDI A+ +A T + P G
Sbjct: 105 PVPTIAAIDGLALG-GGLELALACDIRVAASSAK------------MGLVETKLAIIPGG 151
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
+ PR G S+A EL+++ R L+ +EA G +S V + + + A+
Sbjct: 152 GGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREF 211
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P +M AK + M L E + +++ + + AF R
Sbjct: 212 LPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRP 266
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 74.0 bits (182), Expect = 4e-16
Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 26/164 (15%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
IA+V G A+G AL C + A + P L + P
Sbjct: 138 GARAHSIALVQGNALG-GGFEAALSCHTIIAEEGV------------MMGLPEVLFDLFP 184
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
+ + +A +++ G +A++ L G V V + + +
Sbjct: 185 GMGAYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ----GVAAVEQVIR 240
Query: 147 L---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEF 187
P + +Q+ + L E R+ E W
Sbjct: 241 ESKRTPHAWAAMQQVREMTTAVPLEEMM-----RITEIWVDTAM 279
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 72.9 bits (180), Expect = 5e-16
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P+IA VNG A+G LAL CD++ AS A F P G+ P
Sbjct: 95 KTPMIAAVNGLALG-GGFELALSCDLIVASSAAE------------FGFPEVNLGVMPGA 141
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
+ ++ G A E L+TG +++A+EA Q G V+ V + E L A
Sbjct: 142 GGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPEL----LMEETMRLAGRL 197
Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
+ PP ++ K+ V+ + L+E + E K + SE+ + AF RK
Sbjct: 198 AEQPPLALRLIKEAVQKAVDYPLYEGMQFERKNFYLLFASEDQKEGMAAFLEKRK 252
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 72.5 bits (179), Expect = 8e-16
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP+IA ++G A+G A+ C + FA+++A P G+ P
Sbjct: 98 SKPVIAAIHGAALG-GGLEFAMSCHMRFATESAK------------LGLPELTLGLIPGF 144
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
+ PR G + A E++ T + EAL++G V+GVF E A
Sbjct: 145 AGTQRLPRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEET----FLDDTLKVAKQI 200
Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P + +L++ S +E +RE + E + SE+ + AF RK
Sbjct: 201 AGKSPATARAVLELLQTTKSSHYYEGVQREAQIFGEVFTSEDGREGVAAFLEKRK 255
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 72.6 bits (179), Expect = 8e-16
Identities = 41/195 (21%), Positives = 78/195 (40%), Gaps = 23/195 (11%)
Query: 11 EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVF 69
+ L++ +PKP+I++V G G A + + D++ A+ T+
Sbjct: 77 DPLSYDDPLRQITRMIQKFPKPIISMVEGSVWG-GAFEMIMSSDLIIAASTS-------- 127
Query: 70 VLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 129
TF G+ R G + EL++T + AQ AL G ++ V
Sbjct: 128 ----TFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVE 183
Query: 130 TEEIE---RDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANK--RECKRLEERWES 184
EE+E + I ++ P ++ K+ +RV + +++ R ++S
Sbjct: 184 VEELEDFTLQMAHHI---SEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDS 240
Query: 185 EEFMNAITAFFN-RK 198
E++ + AF RK
Sbjct: 241 EDYQEGMNAFLEKRK 255
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 72.2 bits (178), Expect = 9e-16
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP++A V G A+G LA+ CD+V A+DTA F P G+ P
Sbjct: 100 RKPIVAAVAGYALG-GGCELAMLCDLVIAADTA------------RFGQPEITLGILPGL 146
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
+ R G + A +L TGR L A+EA + G VS + + L A A
Sbjct: 147 GGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD----LLDEALAVAQRI 202
Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
++ + K + L + E +++ + +TAF R
Sbjct: 203 ARMSRPAGRAVKDAINEAFERPLSAGMRYERDAFYAMFDTHDQTEGMTAFLEKRT 257
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 72.2 bits (178), Expect = 9e-16
Identities = 52/175 (29%), Positives = 75/175 (42%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
KP+IA VNG A+G LA+ CDI++A + A F P L G P
Sbjct: 97 KKPVIAAVNGYALG-GGCELAMMCDIIYAGEKAQ------------FGQPEILLGTIPGA 143
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
+ R G S+A E++ TG +++AQ+A Q G VS +F E L A
Sbjct: 144 GGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET----LVEEAIQCAEKI 199
Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
+ AK+ V L E NK E K + +++ ++AF RK
Sbjct: 200 ANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRK 254
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 71.8 bits (177), Expect = 1e-15
Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P IA V G A+G LA+ CD++ A+DTA F P G+ P
Sbjct: 115 RTPTIAAVAGYALG-GGCELAMMCDVLIAADTAK------------FGQPEIKLGVLPGM 161
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWA--- 145
S R G + A +L+ TGR ++A EA + G VS V ++ L A A
Sbjct: 162 GGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADD----LLTEARATATTI 217
Query: 146 -KLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
++ + AK+ V S L E E + + +E+ + AF R
Sbjct: 218 SQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAFATEDQSEGMAAFIEKRA 272
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 71.4 bits (176), Expect = 2e-15
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 22/150 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PKP +A V G A+G + TLAL D + D F L G+ P G
Sbjct: 115 PKPTVAAVTGYALG-AGLTLALAADWRVSGDNVK------------FGATEILAGLIPGG 161
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
R+ G+S A EL+++GR +A+EAL G + + ++ ++ AWA+
Sbjct: 162 GGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDD----VYDSAVAWARRY 217
Query: 147 --LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
PP+++ AK ++ E E
Sbjct: 218 LECPPRALAAAKAVINDVFELEATERAAAE 247
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 70.6 bits (174), Expect = 3e-15
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 22/177 (12%)
Query: 28 DYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTP 86
P+ IA + G +G +AL CD+ F D A P G+
Sbjct: 99 RSPQVYIACLEGHTVG-GGLEMALACDLRFMGDEA-----------GKIGLPEVSLGVLA 146
Query: 87 EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 146
+ R+ G S A ++ TG + QEAL+ G V+ VF E R +A+
Sbjct: 147 GTGGTQRLARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAE----TRERTREYAR 202
Query: 147 L----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
++ K + L+ A + E + + SE+ ++AF R+
Sbjct: 203 KLANSATYAVSNIKLAIMNGKEMPLNVAIRYEGELQNLLFRSEDAKEGLSAFLEKRQ 259
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 71.1 bits (175), Expect = 3e-15
Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 22/135 (16%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PKP+IA+V G A+G L + CD+ A+D AI F G G
Sbjct: 107 PKPVIAMVKGYAVG-GGNVLNVVCDLTIAADNAI------------FGQTGPKVGSFDAG 153
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
S RI G+ A E+ Y R+ NAQEAL G V+ V E+ + W K
Sbjct: 154 YGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEK----VEDETVQWCKEI 209
Query: 147 --LPPQSMIFAKQLV 159
P ++ F K +
Sbjct: 210 MKHSPTALRFLKAAM 224
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 69.8 bits (172), Expect = 6e-15
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P+P+IA +NG A+G T L+L CD A+++A T + P
Sbjct: 102 PQPVIAAINGIALG-GGTELSLACDFRIAAESAS------------LGLTETTLAIIPGA 148
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL- 147
+ PR+ G A EL+YTGR+++AQEA +YG V V L + A+
Sbjct: 149 GGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHL----LEEKAIEIAEKI 204
Query: 148 ---PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFN-RK 198
P ++ AK+ + + LH + E + E +++ + + AF R
Sbjct: 205 ASNGPIAVRLAKEAISNGIQVDLHTGLQMEKQAYEGVIHTKDRLEGLQAFKEKRT 259
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 69.9 bits (172), Expect = 8e-15
Identities = 41/135 (30%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PK +IA+V G AIG L L CD+ A+D AI F G G
Sbjct: 109 PKVVIALVAGYAIG-GGHVLHLVCDLTIAADNAI------------FGQTGPKVGSFDGG 155
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
S RI G A E+ Y R+ +AQEA + G V+ V + +E WAK
Sbjct: 156 FGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLE----EEGIQWAKEI 211
Query: 147 --LPPQSMIFAKQLV 159
P ++ K
Sbjct: 212 LSKSPLAIRCLKAAF 226
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 69.2 bits (170), Expect = 2e-14
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 22/135 (16%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
PKP++A+V G +IG L + CD+ A+D AI F G G
Sbjct: 123 PKPVVAMVAGYSIG-GGHVLHMMCDLTIAADNAI------------FGQTGPKVGSFDGG 169
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
+ RI G A E+ + R+ +A++AL G V+ V + L W +
Sbjct: 170 WGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLAD----LEKETVRWCREM 225
Query: 147 --LPPQSMIFAKQLV 159
P ++ K +
Sbjct: 226 LQNSPMALRCLKAAL 240
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 69.2 bits (170), Expect = 2e-14
Identities = 38/204 (18%), Positives = 63/204 (30%), Gaps = 24/204 (11%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFAS- 58
+ + +L P IA + G A G + + L CD+ FAS
Sbjct: 74 VPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARG-AGSEFLLACDMRFASR 132
Query: 59 DTAILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
+ AI P G P + R+ G A E + T +A A
Sbjct: 133 ENAI------------LGQPEVGIGAPPGAGAIQHLTRLLGRGRALEAVLTSSDFDADLA 180
Query: 119 LQYGFVSGVFTTEEIERDLWPRIHAWAK----LPPQSMIFAKQLVRVPMLSMLHEANKRE 174
+YG+V+ E L + A P ++I AK + L + +
Sbjct: 181 ERYGWVNRAVPDAE----LDEFVAGIAARMSGFPRDALIAAKSAINAISLP-APAEVRAD 235
Query: 175 CKRLEERWESEEFMNAITAFFNRK 198
++ E+ F +
Sbjct: 236 AALFQQLVRGEKVQQRTAELFKQG 259
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 67.6 bits (166), Expect = 6e-14
Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 24/173 (13%)
Query: 30 PKPLIAIVNGPAIGISATTLAL-CDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEG 88
P+ I + G A G D+ FA+ A L G+ P G
Sbjct: 106 PQVTIVKLAGKARG-GGAEFVAAADMAFAAAE-----------TAGLGQIEALMGIIPGG 153
Query: 89 CSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK-- 146
+ G + A E++ T +A+ A YG+++ +E L + A+
Sbjct: 154 GGTQYLRGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE----LDEYVDRVARNI 209
Query: 147 --LPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNR 197
LP + AK+ + L E E + I+
Sbjct: 210 AALPDGVIEAAKRSLPA---DDLKEGLLGENDAWAATFSLPAAQQLISGGLKD 259
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 66.5 bits (163), Expect = 1e-13
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 30 PKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGC 89
P P+IA+VNG A +A CDI ASD + +F TP G+
Sbjct: 126 PVPVIAMVNGLATAAGCQLVASCDIAVASDKS------------SFATPGVNVGLFC-ST 172
Query: 90 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWAK 146
V R VA E+L+TG ++AQEAL +G +S V E++ + +I A
Sbjct: 173 PGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKI---AS 229
Query: 147 LPPQSMIFAKQLV 159
L + K
Sbjct: 230 LSRPVVSLGKATF 242
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 64.2 bits (156), Expect = 2e-12
Identities = 27/171 (15%), Positives = 49/171 (28%), Gaps = 15/171 (8%)
Query: 4 NPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAI 62
+N T+ T + +A VNG G LAL CD ++ D
Sbjct: 103 THAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAG-GGYELALACDEIYLVDDR- 160
Query: 63 LLNHPVFVLQATFHTP-FTLRGMTPE--GCSSVLFPRIFGNSVASELLYTGRKLNAQEAL 119
++ P L G+ P G + V R + A + + A
Sbjct: 161 ---------SSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAK 211
Query: 120 QYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA 170
+ V V + ++ + R A + + + +
Sbjct: 212 AWRLVDEVVKPNQFDQAIQARALELAAQSDRPAHAQGVPLTRIERTDREDG 262
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 46.5 bits (111), Expect = 2e-06
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 16/136 (11%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASD 59
+ E I++ KP +A ++G A+G LA+ C ++
Sbjct: 73 FGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGG-GLELAMACHARISAP 131
Query: 60 TAIL-LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEA 118
A L L P G+ P + PR+ G + A E++ T + + A+E
Sbjct: 132 AAQLGL-------------PELQLGVIPGFGGTQRLPRLVGLTKALEMILTSKPVKAEEG 178
Query: 119 LQYGFVSGVFTTEEIE 134
G + V E+
Sbjct: 179 HSLGLIDAVVPPAELV 194
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 45.7 bits (109), Expect = 4e-06
Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 11 EDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-LNHPV 68
E ++ K + F D P +A +NG A+G + L D +D+A + L
Sbjct: 84 ELIAGNLEANKIFSDFEDLNVPTVAAINGIALGG-GLEMCLAADFRVMADSAKIGL---- 138
Query: 69 FVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 128
P G+ P +V PR+ G A E + +G++ A++AL+ V V
Sbjct: 139 ---------PEVKLGIYPGFGGTVRLPRLIGVDNAVEWIASGKENRAEDALKVSAVDAVV 189
Query: 129 TTEEIE 134
T +++
Sbjct: 190 TADKLG 195
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 43.0 bits (102), Expect = 3e-05
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 18/130 (13%)
Query: 9 INE--DTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLAL-CDIVFASDTAIL-L 64
I+ + L V Y KP++A + G A+G LAL C A+ A + L
Sbjct: 83 IHGFSAFTPGLALGSLVDEIQRYQKPVLAAIQGVALGG-GLELALGCHYRIANAKARVGL 141
Query: 65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
P G+ P + L PR+ G VA +L+ +G+ L+A EAL+ G +
Sbjct: 142 -------------PEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGIL 188
Query: 125 SGVFTTEEIE 134
V ++ +E
Sbjct: 189 DAVVKSDPVE 198
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 4e-04
Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 64/190 (33%)
Query: 6 TDLINEDTDTSITLQKYVAAFID----YPK--PLIAIVNGPAIGISATTLALCDIVFASD 59
DLI ++ TL + + +D + + ++ + P+ D
Sbjct: 185 GDLIKF---SAETLSELIRTTLDAEKVFTQGLNILEWLENPSN--------------TPD 227
Query: 60 TAILLNHPV-----FVLQATFHTPFTLR--GMTPEGCSSVLFPRIFGNSVASELLYTGRK 112
LL+ P+ V+Q H T + G TP L + G + S+ L T
Sbjct: 228 KDYLLSIPISCPLIGVIQLA-HYVVTAKLLGFTPG----ELRSYLKGATGHSQGLVTAVA 282
Query: 113 L-----------NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRV 161
+ + ++A+ F GV E +P LPP + + +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEA-----YPNT----SLPPSIL---EDSLEN 330
Query: 162 ------PMLS 165
PMLS
Sbjct: 331 NEGVPSPMLS 340
Score = 36.2 bits (83), Expect = 0.006
Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 68/201 (33%)
Query: 18 TLQKYVAAFIDY-P--KPL-IAIVNGP-AIGISATTLALCDIVFA---------SDTA-I 62
+Q YV + P K + I++VNG + +S +L + D + I
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 63 LLN--HPVFVLQ-----ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNA 115
+ F + + FH+ + P I + V + + + + +
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHL----LVP------ASDLINKDLVKNNVSFNAKDIQI 457
Query: 116 QEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKREC 175
V+ T + DL R+ + + + ++R+P+
Sbjct: 458 P----------VYDTFD-GSDL--RVLS-GSISER---IVDCIIRLPV------------ 488
Query: 176 KRLEERWESEEFMNA--ITAF 194
+WE+ A I F
Sbjct: 489 -----KWETTTQFKATHILDF 504
Score = 33.9 bits (77), Expect = 0.030
Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 66/208 (31%)
Query: 28 DYPKPLIAIVNGPAIG--ISATTLALC-----------DIVFA----SDTAILLNHPVFV 70
+ P L I G G I A+ + +F T+ +
Sbjct: 1667 NNPVNL-TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
Query: 71 LQATFHT-P--FTL----------RGMTPEGCSSVLFPRIF-GNSV----ASELLYTGRK 112
L AT T P + +G+ P F G+S+ A L
Sbjct: 1726 LSATQFTQPALTLMEKAAFEDLKSKGLIPADA-------TFAGHSLGEYAA--LASLADV 1776
Query: 113 LNAQEALQYGFVSGVFTTEEIERDLWPRI-HAWAKLPPQSMIFAKQLVRVPMLSMLHEAN 171
++ + ++ F G+ + RD R + + P + S EA
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVA----------ASFSQEAL 1826
Query: 172 KRECKRLEERWESEEFM---NAITAFFN 196
+ +R+ + + + N +N
Sbjct: 1827 QYVVERVGK--RTGWLVEIVN-----YN 1847
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.14
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 9/28 (32%)
Query: 47 TTLALCDIVFASDTAILLNHPVFVLQAT 74
+L L +A D+A P ++AT
Sbjct: 27 ASLKL----YADDSA-----PALAIKAT 45
Score = 29.9 bits (66), Expect = 0.29
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 12/30 (40%)
Query: 18 TLQKYVAAFIDYPKPLIAIVNGPAIGISAT 47
+L+ Y + PA+ I AT
Sbjct: 28 SLKLYA------DD------SAPALAIKAT 45
Score = 25.7 bits (55), Expect = 7.8
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 172 KRECKRLEERW-----ESEEFMNAITA 193
K+ K+L+ +S + AI A
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIKA 44
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 30.3 bits (68), Expect = 0.33
Identities = 11/112 (9%), Positives = 26/112 (23%), Gaps = 16/112 (14%)
Query: 31 KPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPEGCS 90
+ A ++ + + + + +
Sbjct: 71 IIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPAI----- 125
Query: 91 SVLFPRIFGNSVAS----------ELLYTGRKLNAQEALQYGFVSGVFTTEE 132
+ + S+A E + L +EAL+YG + V
Sbjct: 126 -TNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDIN 176
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 28.9 bits (65), Expect = 0.97
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 21/99 (21%)
Query: 29 YPKPLIAIVNGPA----IGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
Y KP++ +G +G+ A +H V + P G+
Sbjct: 141 YGKPVLVWGDGIVMGGGLGLMAGA----------------SHKVVTETSRIAMPEVTIGL 184
Query: 85 TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
P+ S R+ G + L T +NA +A G
Sbjct: 185 YPDVGGSYFLNRMPGK-MGLFLGLTAYHMNAADACYVGL 222
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain
duplication, multienzyme complex, transcarboxylase; HET:
MCA; 1.90A {Propionibacterium freudenreichii} SCOP:
c.14.1.4 c.14.1.4 PDB: 1on9_A*
Length = 523
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFASDTA 61
P IAI+ GP G ++ + AL D + + A
Sbjct: 169 PQIAIIAGPCAGGASYSPALTDFIIMTKKA 198
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural
genomics, structural genomics consortium, SGC, RNA
binding protein; HET: SAH; 1.60A {Homo sapiens}
Length = 184
Score = 27.6 bits (62), Expect = 2.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 11 EDTDTSITLQKYVAAFIDYPKPLIAIVNGP-AIGISATTLALCD 53
E T S+ L +Y +P+ ++ G GI A + D
Sbjct: 107 EQTAKSLDLTQY-----CFPEK-SLLLLGNEREGIPANLIQQLD 144
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A,
beta-hydroxyisobutyryl acid, querceti structural
genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Length = 363
Score = 27.7 bits (62), Expect = 2.6
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 29 YPKPLIAIVNGPA----IGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGM 84
KP +A+++G +G+S A++ + F P T G+
Sbjct: 101 CQKPYVALIHGITMGGGVGLSVH----GQFRVATEKCL------------FAMPETAIGL 144
Query: 85 TPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 123
P+ PR+ G + L TG +L ++ + G
Sbjct: 145 FPDVGGGYFLPRLQGK-LGYFLALTGFRLKGRDVYRAGI 182
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Nitrosospira
multiformis atcc 25196} PDB: 3k2q_A
Length = 419
Score = 27.8 bits (62), Expect = 2.9
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 5 PTDLINEDTDTSITLQKYVAAFIDYPKPLI 34
P + I ED IT +Y PLI
Sbjct: 364 PENFITEDG-FGIT-----DLCREYLAPLI 387
>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC,
PCC, CT, carboxyltransfe polyketide, fatty acid, PKS,
FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A*
3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A
Length = 530
Score = 26.8 bits (60), Expect = 5.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFASD 59
P I++V GP G + + A+ D D
Sbjct: 171 PQISLVVGPCAGGAVYSPAITDFTVMVD 198
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis,
accase, ligase, transferase; 2.2A {Mycobacterium
tuberculosis} PDB: 2a7s_A
Length = 548
Score = 26.0 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFASD 59
P I+++ G A G + AL D V D
Sbjct: 182 PQISLIMGAAAGGHVYSPALTDFVIMVD 209
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.408
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,033,752
Number of extensions: 173124
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 98
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (24.8 bits)