RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5402
(198 letters)
>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 260
Score = 111 bits (278), Expect = 7e-31
Identities = 47/180 (26%), Positives = 75/180 (41%), Gaps = 12/180 (6%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
+ KP+IA VNG A+G +CDI++A + A F P
Sbjct: 86 FLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKA------------QFGQP 133
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
L G P + R G S+A E++ TG +++AQ+A Q G VS +F E + +
Sbjct: 134 EILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAI 193
Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
A + AK+ V L E NK E K + +++ ++AF ++
Sbjct: 194 QCAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKR 253
>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
thermophilus [TaxId: 274]}
Length = 253
Score = 65.5 bits (158), Expect = 9e-14
Identities = 42/171 (24%), Positives = 65/171 (38%), Gaps = 13/171 (7%)
Query: 28 DYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPFTLRGMTPE 87
YPKP +A VNGPA+ A CD+V + A ++
Sbjct: 92 TYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEA-------------RLGYTEVKIGFVA 138
Query: 88 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 147
SV+ R G A +LL TGR + A+EA G V+ + + + AK
Sbjct: 139 ALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKN 198
Query: 148 PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
P S+ K+L+ L + + E+ + I AFF ++
Sbjct: 199 APTSLRLTKELLLALPGMGLEDGFRLAALANAWVRETGDLAEGIRAFFEKR 249
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA
isomerase {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 62.8 bits (151), Expect = 7e-13
Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 12/171 (7%)
Query: 19 LQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTP 78
L+++V FID+PKPLIA+VNGPA+GIS T L L D V+ASD +ATFHTP
Sbjct: 87 LREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASD------------RATFHTP 134
Query: 79 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 138
F+ G +PEGCSS FP+I + A+E+L G+KL A EA G V+ VF ++++W
Sbjct: 135 FSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVW 194
Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMN 189
R+ A+AKLPP ++ +K+++R LH N EC L+ RW S+E N
Sbjct: 195 TRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLSDECTN 245
>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 55.9 bits (133), Expect = 3e-10
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 73 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 132
A T + P G + PR G S+A EL+++ R L+ +EA G +S V +
Sbjct: 130 AKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189
Query: 133 IERDLWPRIHAWAKL----PPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFM 188
+ + A+ P +M AK + M L E + +++ +
Sbjct: 190 EGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRL 249
Query: 189 NAITAFFNRK 198
+ AF ++
Sbjct: 250 EGLLAFKEKR 259
>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 266
Score = 52.8 bits (125), Expect = 3e-09
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 107 LYTGRKLNAQEALQYGFVSGVF-----TTEEIERDLWPRI-HAWAKLPPQSMIFAKQLVR 160
L + + GF+S F E + + L S + K+L++
Sbjct: 174 LMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLLK 233
Query: 161 VPMLSMLHEANKRECKRLEERWESEE 186
+ ++AN E + W E
Sbjct: 234 SNHIDAFNKANSVEVNESLKYWVDGE 259
>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 275
Score = 50.9 bits (120), Expect = 2e-08
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 12/180 (6%)
Query: 20 QKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDTAILLNHPVFVLQATFHTPF 79
QK PKP+IA ++G IG ++ CDI + + A V V A
Sbjct: 97 QKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTL 156
Query: 80 TLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI-ERDLW 138
S V + A EAL G VS VF +++ +
Sbjct: 157 QRLPKVIGNRSLVNELTFTARKM-----------MADEALDSGLVSRVFPDKDVMLNAAF 205
Query: 139 PRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAITAFFNRK 198
+ P ++ +K + + E+ ++++ + ++ A +K
Sbjct: 206 ALAADISSKSPVAVQGSKINLIYSRDHSVDESLDYMATWNMSMLQTQDIIKSVQAAMEKK 265
>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 297
Score = 50.1 bits (118), Expect = 3e-08
Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 12/198 (6%)
Query: 1 MTNNPTDLINEDTDTSITLQKYVAAFIDYPKPLIAIVNGPAIGISATTLALCDIVFASDT 60
+ + D ++ + + + PK +I +VNG A G + +CD
Sbjct: 101 ASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCD------- 153
Query: 61 AILLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQ 120
A F G G S R G A E+ + GR A++ Q
Sbjct: 154 ----LTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQ 209
Query: 121 YGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEE 180
G V+ V E+E PQ+ K + + L +
Sbjct: 210 MGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAFNL-LDDGLVGQQLFAGEATRL 268
Query: 181 RWESEEFMNAITAFFNRK 198
+ ++E + AF ++
Sbjct: 269 AYMTDEAVEGRDAFLQKR 286
>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 258
Score = 48.7 bits (114), Expect = 7e-08
Identities = 46/134 (34%), Positives = 73/134 (54%)
Query: 65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
+ +A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G V
Sbjct: 121 DLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLV 180
Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWES 184
S VF T +++ +I A + K LVR + L +AN+REC+ L + W S
Sbjct: 181 SQVFLTGTFTQEVMIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSS 240
Query: 185 EEFMNAITAFFNRK 198
+ + ++ + K
Sbjct: 241 AQGIESMLKYVENK 254
>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 45.6 bits (106), Expect = 9e-07
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 65 NHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 124
+ + +TF G+ R G + EL++T + AQ AL G +
Sbjct: 119 DLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTASPITAQRALAVGIL 178
Query: 125 SGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRV--PMLSMLHEANKRECKRLEERW 182
+ V EE+E H ++ P ++ K+ +RV +M + +R +
Sbjct: 179 NHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVY 238
Query: 183 ESEEFMNAITAFFNRK 198
+SE++ + AF ++
Sbjct: 239 DSEDYQEGMNAFLEKR 254
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas
sp., strain CBS-3 [TaxId: 306]}
Length = 269
Score = 45.6 bits (106), Expect = 1e-06
Identities = 31/127 (24%), Positives = 49/127 (38%)
Query: 72 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
A F + G+ + +S RI G A EL+ T R L +EA +G VS V+ +
Sbjct: 130 SAKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKD 189
Query: 132 EIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMNAI 191
E W A P + AK+ + + E + E + + FM +
Sbjct: 190 EFREVAWKVARELAAAPTHLQVMAKERFHAGWMQPVEECTEFEIQNVIASVTHPHFMPCL 249
Query: 192 TAFFNRK 198
T F +
Sbjct: 250 TRFLDGH 256
>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase
(delta3-delta2-enoyl-CoA isomerase) {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 249
Score = 37.9 bits (86), Expect = 4e-04
Identities = 16/84 (19%), Positives = 28/84 (33%)
Query: 108 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSML 167
G EALQ G V V E+++ I W +P + K ++R S L
Sbjct: 164 QLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAMMRKATASRL 223
Query: 168 HEANKRECKRLEERWESEEFMNAI 191
+ + + ++
Sbjct: 224 VTQRDADVQNFVSFISKDSIQKSL 247
>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 333
Score = 32.7 bits (74), Expect = 0.020
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFAS-DTAILLNHPVFVLQAT----FHTPFTLRG--- 83
I +V ++GI A + L I+L + + + + L G
Sbjct: 242 FTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLGREVYTSNLQLGGTQI 301
Query: 84 MTPEGCSSVLFP 95
M G S +
Sbjct: 302 MYNNGVSHLTAV 313
>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218
{Thermus thermophilus [TaxId: 274]}
Length = 263
Score = 32.1 bits (71), Expect = 0.036
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 1/88 (1%)
Query: 111 RKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA 170
L +EA + G V+ E++ A+ P +++ K +
Sbjct: 172 EPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKHALNH-WYRSFLPH 230
Query: 171 NKRECKRLEERWESEEFMNAITAFFNRK 198
+ + +E + A ++
Sbjct: 231 FELSLALEFLGFSGKELEEGLKALKEKR 258
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 31.0 bits (68), Expect = 0.076
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 108 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSML 167
Y + L+A + Y V+ V + + + H A P + I K+ V P + +L
Sbjct: 159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRAVNKPFIHLL 218
Query: 168 HEANKRE 174
+
Sbjct: 219 EQTRDAS 225
>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus
erythropolis [TaxId: 1833]}
Length = 249
Score = 28.1 bits (61), Expect = 0.56
Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 73 ATFHTPFTLRGMTPEGCSSVLFPRIF-GNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 131
ATF G + + G++ L TG++L+A+ AL YG V+ V + +
Sbjct: 135 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 194
Query: 132 EIERDLWPRIHAWAKLPPQSMIFAKQLVRVPMLSMLHEA 170
E+ W A+ P + +A++++ + ++
Sbjct: 195 ELLPRAWELARGIAEKPLLARRYARKVLTRQLRRVMEAD 233
>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
falciparum [TaxId: 5833]}
Length = 190
Score = 27.4 bits (60), Expect = 1.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 113 LNAQEALQYGFVSGVFTT 130
+NA EA QYG + V T
Sbjct: 165 MNALEAKQYGIIDEVIET 182
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 26.8 bits (59), Expect = 1.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 113 LNAQEALQYGFVSGVFT 129
L+A EA++YG V + T
Sbjct: 164 LSAPEAVEYGLVDSILT 180
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 26.5 bits (58), Expect = 1.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 113 LNAQEALQYGFVSGVFT 129
A EAL+YGFV + T
Sbjct: 161 FTAAEALEYGFVDHIIT 177
>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
sapiens), mitochondrial [TaxId: 9606]}
Length = 193
Score = 26.5 bits (58), Expect = 2.1
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 113 LNAQEALQYGFVSGVFT 129
++ EA ++G + V
Sbjct: 174 MSPMEAQEFGILDKVLV 190
>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 192
Score = 25.8 bits (56), Expect = 2.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 113 LNAQEALQYGFVSGVFT 129
++AQE L+YGF+ +
Sbjct: 174 MSAQETLEYGFIDEIMA 190
>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 258
Score = 25.1 bits (54), Expect = 5.7
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 32 PLIAIVNGPAIGISATTLALCDIVFASDT--AILLNHPVFVLQAT 74
P I++V GP G + + A+ D D + + P + T
Sbjct: 162 PQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVT 206
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 24.7 bits (53), Expect = 8.0
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 152 MIFAKQLVRVPMLSMLHEANKRECKRLEERWESEEFMN 189
M+ + + +L+ E + + +S + +
Sbjct: 88 MLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGS 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.135 0.408
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 729,554
Number of extensions: 31856
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 26
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.7 bits)