BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5406
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L0E|A Chain A, Structural And Functional Analysis Of Tm Vi Of The Nhe1
Isoform Of The Na+H+ EXCHANGER
Length = 33
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 248 ESFAFGSLISAVDPVATVAIFHAL 271
++ FGS+ISAVDPVA +A+F +
Sbjct: 5 DNLLFGSIISAVDPVAVLAVFEEI 28
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 160 GMII-NLMSNKNIANWHKE-----ETFSPTAFFLVLLPP----------IIFESGYNLHK 203
GM I NL SNK+ WHK+ T + F + LPP + + SG
Sbjct: 1 GMSIENLSSNKSFGGWHKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD 60
Query: 204 GNFFQNIGSILVFAIIGTTISA 225
NF Q G+ + A +G I A
Sbjct: 61 ENFMQKAGAQRLAAELGIAIVA 82
>pdb|2WVK|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVK|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 Apoprotein
pdb|2WVL|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
pdb|2WVL|B Chain B, Mannosyl-3-Phosphoglycerate Synthase From Thermus
Thermophilus Hb27 In Complex With Gdp-Alpha-D-Mannose
And Mg(Ii)
Length = 391
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 272 DVDPVLNMLVFGESILNDAI---AIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA 328
D P + + ++ L D + AIV+ T N + E VL+G H L+ AS
Sbjct: 33 DESPAVGLRRLDDADLRDVLEQTAIVVPTR-----NERLKLLEGVLSGIPHEALILVASN 87
Query: 329 GIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIH 373
F + LL ++ L + P+ L+F ALAE +
Sbjct: 88 SSPDRFQMERDLLEEFAHLTERPA------LIFHQKDPALAEALR 126
>pdb|2WVM|A Chain A, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
pdb|2WVM|B Chain B, H309a Mutant Of Mannosyl-3-phosphoglycerate Synthase From
Thermus Thermophilus Hb27 In Complex With
Gdp-alpha-d-mannose And Mg(ii)
Length = 391
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 272 DVDPVLNMLVFGESILNDAI---AIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA 328
D P + + ++ L D + AIV+ T N + E VL+G H L+ AS
Sbjct: 33 DESPAVGLRRLDDADLRDVLEQTAIVVPTR-----NERLKLLEGVLSGIPHEALILVASN 87
Query: 329 GIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIH 373
F + LL ++ L + P+ L+F ALAE +
Sbjct: 88 SSPDRFQMERDLLEEFAHLTERPA------LIFHQKDPALAEALR 126
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 15/79 (18%)
Query: 162 IINLMSNKNIANWHKE-----ETFSPTAFFLVLLPP----------IIFESGYNLHKGNF 206
I NL SNK+ WHK+ T + F + LPP + + SG NF
Sbjct: 4 IENLSSNKSFGGWHKQYSHVSNTLNCAXRFAIYLPPQASTGAKVPVLYWLSGLTCSDENF 63
Query: 207 FQNIGSILVFAIIGTTISA 225
Q G+ + A +G I A
Sbjct: 64 XQKAGAQRLAAELGIAIVA 82
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 233 YILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIA 292
++ DV ++ + G+++S P A IF A VDP + ++ G ++ + I
Sbjct: 288 FVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIF-AETVDPSIEVMWTGPGVVTNEIP 346
Query: 293 IVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA-GIGVLFALISALLLKYVD-LRKN 350
+ I G N NM W +N+ +F +G + L L +YVD N
Sbjct: 347 LSDAQLISGIYNRNMAVW------WNYPVTDYFKGKLALGPMHGLDKG-LNQYVDFFTVN 399
Query: 351 P--SLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLA 391
P E + + T A Y+ + + +++ + L LA
Sbjct: 400 PMEHAELSKISIHTAADYSWNMDNYDYDKAWNRAIDMLYGDLA 442
>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBI|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBJ|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2CBJ|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2V5C|A Chain A, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2V5C|B Chain B, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2VUR|A Chain A, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2VUR|B Chain B, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2X0Y|A Chain A, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
pdb|2X0Y|B Chain B, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
Length = 594
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 233 YILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIA 292
++ DV ++ + G+++S P A IF A VDP + ++ G ++ + I
Sbjct: 288 FVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIF-AETVDPSIEVMWTGPGVVTNEIP 346
Query: 293 IVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA-GIGVLFALISALLLKYVD-LRKN 350
+ I G N NM W +N+ +F +G + L L +YVD N
Sbjct: 347 LSDAQLISGIYNRNMAVW------WNYPVTDYFKGKLALGPMHGLDKG-LNQYVDFFTVN 399
Query: 351 P--SLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLA 391
P E + + T A Y+ + + +++ + L LA
Sbjct: 400 PMEHAELSKISIHTAADYSWNMDNYDYDKAWNRAIDMLYGDLA 442
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 45 LGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEP 103
LG + SI IL TK + + LP +A+ T+A + P+S ++ ++ +++ P P
Sbjct: 130 LGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSP 188
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 45 LGKNISISNTPILTSSTKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEP 103
LG + SI IL TK + + LP +A+ T+A + P+S ++ ++ +++ P P
Sbjct: 110 LGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSP 168
>pdb|2HTG|A Chain A, Structural And Functional Characterization Of Tm Vii Of
The Nhe1 Isoform Of The Na+H+ EXCHANGER
Length = 28
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 273 VDPVLNMLVFGESILNDAIAIVL 295
++ +L++LVFGES+LNDA+ +VL
Sbjct: 2 INELLHILVFGESLLNDAVTVVL 24
>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide
pdb|2YDR|A Chain A, Cpoga D298n In Complex With P53-Derived O-Glcnac Peptide
pdb|2YDS|A Chain A, Cpoga D298n In Complex With Tab1-Derived O-Glcnac Peptide
Length = 590
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 233 YILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIA 292
++ DV ++ + G+++S P A IF A VDP + ++ G ++ + I
Sbjct: 290 FVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIF-AETVDPSIEVMWTGPGVVTNEIP 348
Query: 293 IVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA-GIGVLFALISALLLKYVD-LRKN 350
+ I G + NM W +N+ +F +G + L L +YVD N
Sbjct: 349 LSDAQLISGIYDRNMAVW------WNYPVTDYFKGKLALGPMHGLDKG-LNQYVDFFTVN 401
Query: 351 P--SLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLA 391
P E + + T A Y+ + + +++ + L LA
Sbjct: 402 PMEHAELSKISIHTAADYSWNMDNYDYDKAWNRAIDMLYGDLA 444
>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2J62|B Chain B, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2WB5|A Chain A, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
pdb|2WB5|B Chain B, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
Length = 594
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 12/163 (7%)
Query: 233 YILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIA 292
++ DV ++ + G+++S P A IF A VDP + ++ G ++ + I
Sbjct: 288 FVKAKGDVKPLITVPTEYDTGAMVSNGQPRAYTRIF-AETVDPSIEVMWTGPGVVTNEIP 346
Query: 293 IVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASA-GIGVLFALISALLLKYVD-LRKN 350
+ I G + NM W +N+ +F +G + L L +YVD N
Sbjct: 347 LSDAQLISGIYDRNMAVW------WNYPVTDYFKGKLALGPMHGLDKG-LNQYVDFFTVN 399
Query: 351 P--SLEFGLMLVFTYAPYALAEGIHLSARTYSKTLVFLITGLA 391
P E + + T A Y+ + + +++ + L LA
Sbjct: 400 PMEHAELSKISIHTAADYSWNMDNYDYDKAWNRAIDMLYGDLA 442
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 32/106 (30%)
Query: 161 MIINLMSNKNIANWHKEETFSP-----TAFFLVLLPPIIFE----------SGYNLHKGN 205
M+ N+ S K WHK+ T S T F V LPP E SG N
Sbjct: 1 MLENISSVKVSGGWHKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTDEN 60
Query: 206 FFQNIGSILVFAIIGTTISA-----------------FVIGAGVYI 234
F Q G+ A +G I A F GAG Y+
Sbjct: 61 FMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQGAGFYV 106
>pdb|2IC7|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2IC7|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus
pdb|2P2O|A Chain A, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|B Chain B, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|C Chain C, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|D Chain D, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|E Chain E, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
pdb|2P2O|F Chain F, Crystal Structure Of Maltose Transacetylase From
Geobacillus Kaustophilus P2(1) Crystal Form
Length = 185
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 177 EETFSPTAFFLVLLPPIIFESGYNLHKG-NFFQNIGSILVFAIIGTTISAFVIGAGVYI 234
+E F T L + P + GYN+H G NFF N +++ IG GV+I
Sbjct: 51 KELFGSTGERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHI 109
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 197 SGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSF 246
GY +H + + +G +LV+ I G + V+ V +L A V Y +F
Sbjct: 144 KGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNF 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,799,014
Number of Sequences: 62578
Number of extensions: 483579
Number of successful extensions: 1271
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1265
Number of HSP's gapped (non-prelim): 18
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)