Query psy5406
Match_columns 523
No_of_seqs 292 out of 1667
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 16:40:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1965|consensus 100.0 2.1E-65 4.5E-70 535.4 28.8 402 102-504 18-462 (575)
2 TIGR00840 b_cpa1 sodium/hydrog 100.0 3.6E-56 7.8E-61 483.1 41.0 384 114-506 4-426 (559)
3 KOG1966|consensus 100.0 7.1E-56 1.5E-60 460.6 7.0 386 111-506 34-458 (670)
4 COG0025 NhaP NhaP-type Na+/H+ 100.0 6E-46 1.3E-50 392.9 37.7 370 118-505 5-415 (429)
5 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2E-45 4.3E-50 399.1 39.3 337 144-502 20-414 (525)
6 PRK05326 potassium/proton anti 100.0 2.1E-40 4.6E-45 363.9 34.0 359 121-505 8-400 (562)
7 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 8.4E-39 1.8E-43 349.8 35.8 357 121-492 15-436 (810)
8 COG3263 NhaP-type Na+/H+ and K 100.0 3.5E-39 7.6E-44 324.4 26.9 356 121-503 8-396 (574)
9 KOG4505|consensus 100.0 6.3E-30 1.4E-34 249.7 23.8 354 133-503 27-444 (467)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 9E-32 2E-36 282.3 0.2 341 129-494 6-380 (380)
11 PRK03562 glutathione-regulated 99.9 1.3E-22 2.8E-27 224.8 33.9 336 121-486 7-374 (621)
12 COG0475 KefB Kef-type K+ trans 99.9 6.1E-22 1.3E-26 208.3 34.3 351 120-499 7-391 (397)
13 PRK10669 putative cation:proto 99.9 4.8E-22 1E-26 218.8 34.1 342 123-490 10-386 (558)
14 TIGR00932 2a37 transporter, mo 99.9 1.8E-22 3.8E-27 202.8 24.1 227 129-377 2-230 (273)
15 PRK03659 glutathione-regulated 99.9 2.5E-21 5.3E-26 214.2 35.3 331 123-485 9-370 (601)
16 PLN03159 cation/H(+) antiporte 99.9 3.6E-21 7.7E-26 218.9 37.0 344 120-478 44-422 (832)
17 KOG1965|consensus 99.5 2.9E-15 6.4E-20 158.5 2.4 54 1-54 293-346 (575)
18 COG4651 RosB Kef-type K+ trans 99.5 1.2E-11 2.7E-16 120.7 25.9 336 121-485 8-381 (408)
19 KOG1966|consensus 99.2 1.1E-11 2.4E-16 131.1 2.6 54 1-54 295-348 (670)
20 KOG1650|consensus 99.1 3.3E-09 7.1E-14 120.0 20.8 359 121-496 25-421 (769)
21 PRK14853 nhaA pH-dependent sod 98.2 0.00044 9.5E-09 72.9 24.9 104 185-300 66-178 (423)
22 TIGR00840 b_cpa1 sodium/hydrog 98.1 1.3E-06 2.9E-11 96.0 2.7 50 1-50 263-312 (559)
23 TIGR00773 NhaA Na+/H+ antiport 96.9 0.037 8.1E-07 57.5 16.5 228 187-457 58-336 (373)
24 TIGR00831 a_cpa1 Na+/H+ antipo 95.4 0.0087 1.9E-07 65.9 2.7 50 1-50 234-284 (525)
25 PF03812 KdgT: 2-keto-3-deoxyg 95.4 2.2 4.7E-05 43.3 19.2 141 144-294 8-154 (314)
26 PRK03659 glutathione-regulated 95.1 0.62 1.3E-05 52.3 16.1 74 183-263 264-337 (601)
27 PF13593 DUF4137: SBF-like CPA 95.0 4.9 0.00011 41.3 24.7 158 180-344 27-187 (313)
28 PRK09560 nhaA pH-dependent sod 95.0 2.2 4.9E-05 44.7 18.6 103 184-300 62-175 (389)
29 PRK03562 glutathione-regulated 94.8 0.73 1.6E-05 51.9 15.8 93 183-282 267-362 (621)
30 PF01758 SBF: Sodium Bile acid 94.7 0.3 6.5E-06 46.1 10.5 145 189-343 3-149 (187)
31 PRK09561 nhaA pH-dependent sod 94.7 3.1 6.8E-05 43.6 18.5 102 185-300 63-175 (388)
32 COG3004 NhaA Na+/H+ antiporter 93.9 3.3 7.2E-05 42.2 16.1 98 193-301 74-179 (390)
33 PRK14855 nhaA pH-dependent sod 93.4 7.4 0.00016 41.4 18.5 103 185-300 67-178 (423)
34 PF03601 Cons_hypoth698: Conse 93.0 9 0.00019 39.2 18.1 112 143-270 23-139 (305)
35 COG0385 Predicted Na+-dependen 92.9 13 0.00027 38.2 25.7 153 185-345 39-191 (319)
36 PRK14854 nhaA pH-dependent sod 92.8 6.5 0.00014 41.1 16.9 100 188-300 63-171 (383)
37 PF03616 Glt_symporter: Sodium 92.8 5.8 0.00013 41.7 17.0 107 120-233 222-328 (368)
38 PRK14856 nhaA pH-dependent sod 92.6 6.2 0.00013 42.1 16.6 102 185-300 72-183 (438)
39 PRK10669 putative cation:proto 92.4 4.2 9E-05 45.2 16.1 73 185-264 277-349 (558)
40 TIGR03082 Gneg_AbrB_dup membra 92.4 8.7 0.00019 35.1 16.6 128 127-276 3-132 (156)
41 TIGR00808 malonate_madM malona 92.1 3.4 7.4E-05 39.2 12.4 142 120-269 17-171 (254)
42 TIGR03802 Asp_Ala_antiprt aspa 91.9 1.1 2.5E-05 49.7 10.9 134 121-276 12-148 (562)
43 PF05145 AmoA: Putative ammoni 91.7 4.7 0.0001 41.5 14.5 108 125-251 158-267 (318)
44 PF06965 Na_H_antiport_1: Na+/ 91.2 0.56 1.2E-05 48.9 7.0 107 183-301 57-172 (378)
45 PLN03159 cation/H(+) antiporte 91.0 2.7 5.8E-05 49.1 13.1 96 185-287 323-423 (832)
46 PF03956 DUF340: Membrane prot 90.3 1.3 2.8E-05 42.1 8.1 129 151-301 3-136 (191)
47 COG2855 Predicted membrane pro 90.2 24 0.00053 36.3 17.5 160 123-302 15-177 (334)
48 COG0786 GltS Na+/glutamate sym 89.9 28 0.00061 36.6 22.7 119 120-255 10-133 (404)
49 COG0475 KefB Kef-type K+ trans 89.9 7.1 0.00015 41.5 14.2 75 183-264 271-346 (397)
50 PRK12460 2-keto-3-deoxyglucona 89.8 25 0.00055 35.9 21.0 142 144-297 8-152 (312)
51 TIGR00832 acr3 arsenical-resis 89.7 27 0.00059 36.1 24.8 101 188-296 47-149 (328)
52 TIGR00698 conserved hypothetic 89.6 9.5 0.00021 39.5 14.4 113 144-270 29-145 (335)
53 PF06826 Asp-Al_Ex: Predicted 89.6 7.2 0.00016 36.3 12.3 119 127-261 5-127 (169)
54 TIGR00210 gltS sodium--glutama 89.3 33 0.00072 36.5 19.2 162 120-295 220-389 (398)
55 TIGR00783 ccs citrate carrier 88.9 6.2 0.00013 40.9 12.3 118 143-272 201-324 (347)
56 COG0025 NhaP NhaP-type Na+/H+ 88.7 0.26 5.5E-06 52.9 2.2 50 1-50 250-300 (429)
57 COG2431 Predicted membrane pro 88.6 3.2 6.9E-05 41.3 9.5 89 148-255 108-200 (297)
58 COG3180 AbrB Putative ammonia 88.2 15 0.00033 38.1 14.5 109 124-251 190-300 (352)
59 COG0786 GltS Na+/glutamate sym 88.0 12 0.00026 39.3 13.6 119 120-251 223-341 (404)
60 PF05982 DUF897: Domain of unk 87.3 3.5 7.5E-05 42.2 9.2 138 146-300 176-322 (327)
61 PF03390 2HCT: 2-hydroxycarbox 86.9 9.8 0.00021 40.4 12.6 127 133-272 260-391 (414)
62 PRK04972 putative transporter; 85.8 7.2 0.00016 43.4 11.6 97 121-234 14-113 (558)
63 TIGR00841 bass bile acid trans 84.9 47 0.001 33.6 18.5 101 189-295 13-115 (286)
64 PF05684 DUF819: Protein of un 84.3 60 0.0013 34.3 32.3 63 145-215 24-86 (378)
65 PRK04288 antiholin-like protei 84.2 44 0.00094 32.8 14.7 51 185-235 66-118 (232)
66 PRK03818 putative transporter; 83.6 11 0.00025 41.8 11.9 95 120-227 7-107 (552)
67 PRK12460 2-keto-3-deoxyglucona 82.9 16 0.00034 37.4 11.5 58 189-253 197-254 (312)
68 PF03616 Glt_symporter: Sodium 82.8 67 0.0014 33.8 30.2 142 119-274 7-154 (368)
69 PRK05326 potassium/proton anti 79.5 24 0.00053 39.2 12.8 65 183-254 273-338 (562)
70 PRK05274 2-keto-3-deoxyglucona 76.7 98 0.0021 32.0 16.2 126 145-277 11-141 (326)
71 TIGR00400 mgtE Mg2+ transporte 75.6 32 0.00069 37.2 12.0 142 146-300 285-443 (449)
72 COG3329 Predicted permease [Ge 74.7 11 0.00023 38.2 7.1 144 146-300 216-366 (372)
73 TIGR00210 gltS sodium--glutama 72.7 1.1E+02 0.0024 32.6 14.8 120 120-253 8-129 (398)
74 COG3493 CitS Na+/citrate sympo 71.7 66 0.0014 33.8 12.2 84 183-272 322-410 (438)
75 COG3180 AbrB Putative ammonia 71.5 1.3E+02 0.0029 31.3 31.2 151 120-294 7-161 (352)
76 TIGR03802 Asp_Ala_antiprt aspa 70.3 55 0.0012 36.5 12.5 107 148-270 417-530 (562)
77 PRK04972 putative transporter; 65.6 67 0.0015 35.8 11.9 135 120-270 382-525 (558)
78 COG1346 LrgB Putative effector 60.3 1.7E+02 0.0038 28.5 16.5 76 193-279 73-150 (230)
79 PRK04125 murein hydrolase regu 59.2 89 0.0019 28.2 9.3 40 196-235 77-116 (141)
80 PF03390 2HCT: 2-hydroxycarbox 59.0 90 0.0019 33.3 10.7 64 182-252 92-155 (414)
81 PF04172 LrgB: LrgB-like famil 55.4 1.6E+02 0.0035 28.5 11.1 51 185-235 50-102 (215)
82 TIGR00659 conserved hypothetic 55.4 2.1E+02 0.0046 28.0 14.8 50 186-235 61-112 (226)
83 TIGR01625 YidE_YbjL_dupl AspT/ 54.6 1.7E+02 0.0037 26.7 10.6 111 146-269 21-136 (154)
84 TIGR00946 2a69 he Auxin Efflux 54.4 1.7E+02 0.0038 29.7 12.0 39 183-221 210-248 (321)
85 COG0798 ACR3 Arsenite efflux p 48.3 3.4E+02 0.0073 28.2 21.7 151 186-346 53-203 (342)
86 KOG3826|consensus 47.8 49 0.0011 32.4 6.0 77 184-266 158-234 (252)
87 TIGR00698 conserved hypothetic 47.6 2.3E+02 0.0049 29.5 11.4 41 184-224 280-320 (335)
88 COG3493 CitS Na+/citrate sympo 47.2 1E+02 0.0022 32.4 8.6 64 182-252 109-172 (438)
89 TIGR00793 kdgT 2-keto-3-deoxyg 45.7 3.5E+02 0.0076 27.7 15.8 97 190-291 51-151 (314)
90 PF03818 MadM: Malonate/sodium 43.8 88 0.0019 23.8 5.6 42 120-164 16-57 (60)
91 PRK01658 holin-like protein; V 41.5 2.4E+02 0.0053 24.7 10.4 40 196-235 74-113 (122)
92 PRK01821 hypothetical protein; 41.3 2.5E+02 0.0054 25.0 9.2 40 196-235 79-118 (133)
93 COG0679 Predicted permeases [G 39.5 3.1E+02 0.0067 27.9 11.0 138 153-301 170-308 (311)
94 TIGR02454 CbiQ_TIGR cobalt ABC 38.6 3.3E+02 0.0071 25.3 11.8 24 256-279 111-134 (198)
95 PRK15477 oxaloacetate decarbox 37.0 2.1E+02 0.0045 30.1 9.0 119 379-505 135-254 (433)
96 PRK15476 oxaloacetate decarbox 36.9 2.1E+02 0.0046 30.1 9.0 119 379-505 135-254 (433)
97 PRK15475 oxaloacetate decarbox 36.7 2.2E+02 0.0047 30.0 9.0 119 379-505 135-254 (433)
98 TIGR03136 malonate_biotin Na+- 34.3 2.7E+02 0.0058 29.3 9.3 114 379-505 106-220 (399)
99 PRK03818 putative transporter; 34.1 2.6E+02 0.0057 31.1 10.1 132 121-267 371-513 (552)
100 PRK09903 putative transporter 33.2 5.3E+02 0.011 26.1 25.2 42 183-225 38-79 (314)
101 PRK09903 putative transporter 32.7 4.6E+02 0.01 26.6 11.1 27 183-209 201-227 (314)
102 PF05145 AmoA: Putative ammoni 32.6 5.6E+02 0.012 26.2 27.0 95 183-286 24-120 (318)
103 COG2985 Predicted permease [Ge 32.3 3.4E+02 0.0074 29.7 9.9 85 185-276 60-149 (544)
104 PF03547 Mem_trans: Membrane t 32.1 5.9E+02 0.013 26.3 17.0 246 32-296 127-384 (385)
105 PRK10711 hypothetical protein; 29.8 5.5E+02 0.012 25.2 13.9 41 195-235 73-113 (231)
106 COG2985 Predicted permease [Ge 28.9 1.1E+02 0.0023 33.4 5.5 102 148-264 397-504 (544)
107 PF00999 Na_H_Exchanger: Sodiu 28.4 30 0.00064 36.1 1.4 69 187-262 266-337 (380)
108 PF03601 Cons_hypoth698: Conse 27.9 5.9E+02 0.013 26.0 10.7 65 432-498 108-172 (305)
109 COG2239 MgtE Mg/Co/Ni transpor 27.3 3E+02 0.0065 29.9 8.7 45 250-299 398-442 (451)
110 TIGR00946 2a69 he Auxin Efflux 27.1 6.7E+02 0.015 25.4 26.9 77 381-461 217-293 (321)
111 TIGR01109 Na_pump_decarbB sodi 26.7 7.4E+02 0.016 25.7 11.5 119 379-505 64-183 (354)
112 PF01769 MgtE: Divalent cation 26.5 2.1E+02 0.0045 25.1 6.4 92 204-296 36-131 (135)
113 TIGR00783 ccs citrate carrier 24.5 2.4E+02 0.0053 29.4 7.2 62 184-252 25-86 (347)
114 PRK11660 putative transporter; 23.8 1E+03 0.022 26.4 16.6 85 200-285 272-362 (568)
115 KOG1650|consensus 23.0 6.2E+02 0.013 29.5 10.8 109 184-300 310-421 (769)
116 PF15179 Myc_target_1: Myc tar 21.9 1.4E+02 0.003 28.1 4.3 27 315-341 20-46 (197)
117 TIGR02230 ATPase_gene1 F0F1-AT 21.1 2.8E+02 0.006 23.5 5.6 38 124-161 52-89 (100)
118 PF11833 DUF3353: Protein of u 20.3 4.8E+02 0.01 24.8 7.8 21 144-164 137-157 (194)
119 COG0805 TatC Sec-independent p 20.1 5.3E+02 0.011 25.7 8.3 21 243-263 198-218 (255)
No 1
>KOG1965|consensus
Probab=100.00 E-value=2.1e-65 Score=535.41 Aligned_cols=402 Identities=46% Similarity=0.789 Sum_probs=366.3
Q ss_pred CCCCCCCCCchhhhchhHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccC
Q psy5406 102 EPVLPEKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFS 181 (523)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~ 181 (523)
.+++.++++.++||++++.+++.+++|++|++.+|+++++|++++||++..+++|+++|.+.++.+......+.+...++
T Consensus 18 ~~~~~~~~~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~ 97 (575)
T KOG1965|consen 18 TDISSDSSASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFS 97 (575)
T ss_pred cccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEec
Confidence 34566777788899999999999999999999999999999999999999999999999998887766555555667899
Q ss_pred hhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccH
Q psy5406 182 PTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDP 261 (523)
Q Consensus 182 ~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDP 261 (523)
|+.|+.++||||+|++||+++++++++|+.+++.++++|++|++.++|.++|+++.....+++++.+|+++||++|||||
T Consensus 98 ~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 98 PDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred ccHHHHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCc
Confidence 99999999999999999999999999999999999999999999999999999876666899999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 262 VATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALL 341 (523)
Q Consensus 262 v~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~l 341 (523)
|++++|++|++++++++++++|||++|||++||+|+.+..+..+....+ ...+.+..|+..++||..+|+++|.+.+++
T Consensus 178 VtvLaIfnel~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~-~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~ 256 (575)
T KOG1965|consen 178 VTVLAIFNELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDW-TAFSAIGNFLYTFFGSLGLGVAIGLISALV 256 (575)
T ss_pred hHHHHHHHHhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654433 344789999999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh----------------------------------hhHHHHHHHH
Q psy5406 342 LKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR----------------------------------TYSKTLVFLI 387 (523)
Q Consensus 342 l~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi----------------------------------~l~~~~~Fv~ 387 (523)
+|+.+.|+++..|..+++.++|.+|++||++|+||+ .++|+++|+|
T Consensus 257 lK~~~l~~~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y 336 (575)
T KOG1965|consen 257 LKFLYLRRTPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIY 336 (575)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 3999999999
Q ss_pred Hhhhhhcc-cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----CCcchhhhhhccC-chhHHHHHhHhccc
Q psy5406 388 TGLAIFSF-RHRVE-PALVIWSLILCLVGRACNIFPLAILVNRFREHQ----ITRRMMFIMWFSG-LRGAISYALSLHLE 460 (523)
Q Consensus 388 lG~~~~~~-~~~~~-~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~~G-lRG~valaLal~~~ 460 (523)
+|+.+.+. .+.+. ..+++++.++++++|++.++|++++.|.+|+++ ++.|++.++||+| +||++++|||+...
T Consensus 337 ~Gl~~f~~~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~ 416 (575)
T KOG1965|consen 337 LGLSAFDFQKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDF 416 (575)
T ss_pred HhHHHhcccceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhc
Confidence 99888664 45666 478899999999999999999999999999988 9999999999999 89999999999655
Q ss_pred CCcc--hhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCcccc
Q psy5406 461 FSDE--TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIG 504 (523)
Q Consensus 461 ~~~~--~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~ 504 (523)
.+.+ .++.+.+++..+|++|+++.|+++.|++++|..+...+.+
T Consensus 417 ~~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~~~~~~~ 462 (575)
T KOG1965|consen 417 TDSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMISVGVAAD 462 (575)
T ss_pred cccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhccccccccc
Confidence 4433 3588999999999999999999999999999877665543
No 2
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=100.00 E-value=3.6e-56 Score=483.15 Aligned_cols=384 Identities=31% Similarity=0.585 Sum_probs=329.7
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHH
Q psy5406 114 ERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPI 193 (523)
Q Consensus 114 ~~~~~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~I 193 (523)
+.+.++.+.+++++..++.+..++..|+ ..++|++++++++|+++|++...... .+...+||+.|+.++||+|
T Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~lP~s~llil~GlllG~i~~~~~~------~~~~~l~~~lf~~~~LPpI 76 (559)
T TIGR00840 4 HVQSPYEFILWILLASLAKIGFHLTHKV-IRAVPESVLLIVYGLLVGGIIKASPH------IDPPTLDSSYFFLYLLPPI 76 (559)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhh-cccCCHHHHHHHHHHHHHHHHHcCCC------CccCCcCHHHHHHHHHHHH
Confidence 3456678888888888887777776554 46799999999999999987543221 1234689999999999999
Q ss_pred HHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-ccCCCHHHHHHHhccccCccHHHHHHHHhhC
Q psy5406 194 IFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLA-DV-AYKLSFVESFAFGSLISAVDPVATVAIFHAL 271 (523)
Q Consensus 194 lF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~-~~-~~~l~~~~alllGailsaTDPv~v~~il~~~ 271 (523)
+|++|+++|+++||+|+++++.+|++|++++++++|..+|++... +. ..+++|.+|+++||++|||||+++++++++.
T Consensus 77 lFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~ 156 (559)
T TIGR00840 77 VLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEY 156 (559)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhc
Confidence 999999999999999999999999999999999999999865211 11 2467999999999999999999999999999
Q ss_pred CCChhHHHHHhhhhhccchhHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5406 272 DVDPVLNMLVFGESILNDAIAIVLTTSILGSDNP--NMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRK 349 (523)
Q Consensus 272 ~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~--~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~ 349 (523)
++|++++++++|||++||++++++|.++..+... +..+..++...+..|+...+||+++|+++|++..+++|+.+.
T Consensus 157 ~v~~~L~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~-- 234 (559)
T TIGR00840 157 HVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHH-- 234 (559)
T ss_pred CCCcchhhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 9999999999999999999999999999987641 222233455566677777888999999999999999998863
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcccchh----------------------------------hhHHHHHHHHHhhhhhcc
Q psy5406 350 NPSLEFGLMLVFTYAPYALAEGIHLSAR----------------------------------TYSKTLVFLITGLAIFSF 395 (523)
Q Consensus 350 ~~~~~~~l~l~~~~l~y~lae~lg~SGi----------------------------------~l~~~~~Fv~lG~~~~~~ 395 (523)
.+..+..++++++|++|.+||.+|+||+ .++|+++|+++|+++...
T Consensus 235 ~~~~e~~l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~ 314 (559)
T TIGR00840 235 IRQIEPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTE 314 (559)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999999 277899999999998655
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCCc-chhhHHHHHHH
Q psy5406 396 RHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSD-ETRHVIITSTL 474 (523)
Q Consensus 396 ~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~~-~~~~~i~~~~~ 474 (523)
.+.+++.++++++++++++|++++++.+++.|++++.++++||+++++|+|+||++++++|+..+... +.++.+.++++
T Consensus 315 ~~~~~~~~i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~ 394 (559)
T TIGR00840 315 NHEWNWAFVVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKIFPYKFLFVTTTL 394 (559)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeeeccccHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 55677777777888899999999999999999888888999999999999999999999999876543 78999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHhCCCCCcccccc
Q psy5406 475 IIVLVTTLVFGGSTMPLMKILQTSSNQKIGRR 506 (523)
Q Consensus 475 ~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~~ 506 (523)
.+|++|+++||.+++|++|++++++.++.+++
T Consensus 395 ~VVl~TvlvqG~T~~pl~~~L~l~~~~~~~~~ 426 (559)
T TIGR00840 395 VVVFFTVIFQGGTIKPLVEVLKVKKGCISKTK 426 (559)
T ss_pred eeehHHHHHHHhhHHHHHHHhCCCCCccchhh
Confidence 99999999999999999999999988775444
No 3
>KOG1966|consensus
Probab=100.00 E-value=7.1e-56 Score=460.60 Aligned_cols=386 Identities=32% Similarity=0.579 Sum_probs=344.4
Q ss_pred chhhhchhHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhh
Q psy5406 111 AEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLL 190 (523)
Q Consensus 111 ~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~L 190 (523)
++++...++.+-+|+++..++.+..|+..+.+ ..+||++.++++|+++|.+.+...... ...++|+.|+.+.|
T Consensus 34 ~w~~V~~p~vi~lwil~asLaKi~fh~~~~l~-~i~PES~lLI~~Gl~lG~ii~~~~~~~------~~~L~s~vFFlyLL 106 (670)
T KOG1966|consen 34 DWEHVHIPYVITLWILVASLAKIVFHLMPKLR-KIVPESCLLIILGLVLGGIIKALATIA------PFFLESDVFFLYLL 106 (670)
T ss_pred ehhhccCchhhHHHHHHHHHHHhccccccccc-ccCchhHHHHHHHHHHHHHHHhhhccc------cccccccchhhhhc
Confidence 35555688899999999999999999987665 349999999999999999876543221 23567899999999
Q ss_pred HHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--CCHHHHHHHhccccCccHHHHHHHH
Q psy5406 191 PPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYK--LSFVESFAFGSLISAVDPVATVAIF 268 (523)
Q Consensus 191 p~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~--l~~~~alllGailsaTDPv~v~~il 268 (523)
|||++++||.|+.|.|+.|+..|+++|++|++++++..|..+|...+.+. ++ .++.+-|+||+++|+.|||+|++++
T Consensus 107 PPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~gl-f~~~~glld~LlFgSLIsAVDPVAVLaVF 185 (670)
T KOG1966|consen 107 PPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGL-FGMSIGLLDILLFGSLISAVDPVAVLAVF 185 (670)
T ss_pred CHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCchHHHHHHHHHHHHhcCchhhhhhh
Confidence 99999999999999999999999999999999999999999988754433 34 6799999999999999999999999
Q ss_pred hhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5406 269 HALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDN--PNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVD 346 (523)
Q Consensus 269 ~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~--~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~ 346 (523)
+|.|+++-++.+++|||++||++.+|+|+.+.++.. ++.-...+...+..+|+...+||+++|+++|++.++..|+.+
T Consensus 186 EEihVNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~ 265 (670)
T KOG1966|consen 186 EEIHVNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTK 265 (670)
T ss_pred hhhccccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999988764 222333445566788889999999999999999999999875
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcccchh----------------------------------hhHHHHHHHHHhhhh
Q psy5406 347 LRKNPSLEFGLMLVFTYAPYALAEGIHLSAR----------------------------------TYSKTLVFLITGLAI 392 (523)
Q Consensus 347 ~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi----------------------------------~l~~~~~Fv~lG~~~ 392 (523)
+-+..|+.+.+.++|++|..||.+|+||| ..+|+++|+++|.+.
T Consensus 266 --~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~ 343 (670)
T KOG1966|consen 266 --HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVST 343 (670)
T ss_pred --ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhh
Confidence 35668999999999999999999999999 388899999999999
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCCc-chhhHHHH
Q psy5406 393 FSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSD-ETRHVIIT 471 (523)
Q Consensus 393 ~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~~-~~~~~i~~ 471 (523)
.+..+.||+.++..++++|++.|++++...+|++|++|..+++.++|++|+++|+||+++++|...++.+. +.++.+.+
T Consensus 344 v~~~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyGGLRGAiaF~LV~lid~~~vp~K~~Fvt 423 (670)
T KOG1966|consen 344 VSSNHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYGGLRGAIAFGLVVLIDGAKVPAKNMFVT 423 (670)
T ss_pred cCCcceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecCCcchhhheeEEEEeccccCCcccceEe
Confidence 88889999999999999999999999999999999999999999999999999999999999999888554 88999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHhCCCCCcccccc
Q psy5406 472 STLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRR 506 (523)
Q Consensus 472 ~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~~ 506 (523)
+++.||.||+++||.+++|++++|++++.++.++.
T Consensus 424 tti~VIfFTVflQGiTIkplvk~L~Vk~~~~~~~~ 458 (670)
T KOG1966|consen 424 TTIAVIFFTVFLQGITIKPLVKFLKVKRKNKRDPT 458 (670)
T ss_pred eeeEEEeeeeeecccchHHHHHHHccccccccCch
Confidence 99999999999999999999999999998876655
No 4
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-46 Score=392.90 Aligned_cols=370 Identities=26% Similarity=0.374 Sum_probs=315.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHH
Q psy5406 118 SIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFE 196 (523)
Q Consensus 118 ~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~ 196 (523)
.+.++...+++.++.....+..|.+ +|++...++.|++.|+. .+..+ .+..+++|.+..+++|+++|+
T Consensus 5 ~~~~~~~~lil~l~~~~~~~~~~l~---~~~i~~~ll~g~i~g~~~l~~~~--------~~~~~~~el~~~l~l~ilLf~ 73 (429)
T COG0025 5 LMLLFLLLLILLLGLLVSVLAGRLL---LPEIPLLLLLGLLGGPPGLNLIS--------PDLELDPELFLVLFLAILLFA 73 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hhhhHHHHHHHHHHhhhhhcccc--------ccccCChHHHHHHHHHHHHHH
Confidence 4567777778788888888877764 78899999999999963 33221 224568899999999999999
Q ss_pred hhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChh
Q psy5406 197 SGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPV 276 (523)
Q Consensus 197 ~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~ 276 (523)
+|+++|++++||+++++..+++++++++++.+|...|++ ..++|+..|+++||+++||||+++.+++++.++|+|
T Consensus 74 ~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l-----~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~r 148 (429)
T COG0025 74 GGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL-----LPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKR 148 (429)
T ss_pred hHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHH
Confidence 999999999999999999999999999999999999997 248999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcchH
Q psy5406 277 LNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLR--KNPSLE 354 (523)
Q Consensus 277 l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~--~~~~~~ 354 (523)
++++++|||++||++++++|.+.++...+... .+.......|++...+|+++|++.|++..+++|+.+.+ +++..+
T Consensus 149 i~~iL~gESl~ND~~giv~f~~~l~~~~~~~~--~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~ 226 (429)
T COG0025 149 IRTILEGESLLNDGVGIVLFKVALAALLGTGA--FSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLE 226 (429)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHH
Confidence 99999999999999999999999998764222 12455788899999999999999999999999998753 256788
Q ss_pred HHHHHHHHHHHHHHHhhcccchh-----------------------------------hhHHHHHHHHHhhhhhcccc-c
Q psy5406 355 FGLMLVFTYAPYALAEGIHLSAR-----------------------------------TYSKTLVFLITGLAIFSFRH-R 398 (523)
Q Consensus 355 ~~l~l~~~~l~y~lae~lg~SGi-----------------------------------~l~~~~~Fv~lG~~~~~~~~-~ 398 (523)
..+++..++.+|.+||.+|.||+ .++|.++|+++|++++.... .
T Consensus 227 ~~i~L~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~ 306 (429)
T COG0025 227 TLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA 306 (429)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999999999 28889999999999975432 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCCcc--hhhHHHHHHHHH
Q psy5406 399 VEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDE--TRHVIITSTLII 476 (523)
Q Consensus 399 ~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~~~--~~~~i~~~~~~v 476 (523)
..+..++.....++++|++++++.++..++..+...++||+.+++|+|+||++++++|+..+...+ .++.+..+++.+
T Consensus 307 ~~~~~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~v 386 (429)
T COG0025 307 LGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVFLV 386 (429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhcccccHHHHHHHHHchhhccchhhhHHHHHHHHH
Confidence 234556667788899999999988776442224457999999999999999999999998875543 599999999999
Q ss_pred HHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 477 VLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 477 Vl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
|++|+++||.+++|+.++++..+++..++
T Consensus 387 Il~Sl~v~g~t~~~l~~~~~~~~~~~~~~ 415 (429)
T COG0025 387 ILFSLLVQGLTLPPLAKKLEVSEESALAK 415 (429)
T ss_pred HHHHHHHHhhhHHHHHHHhccCccchhhh
Confidence 99999999999999999999876654433
No 5
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=100.00 E-value=2e-45 Score=399.10 Aligned_cols=337 Identities=23% Similarity=0.336 Sum_probs=277.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHH
Q psy5406 144 QYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTI 223 (523)
Q Consensus 144 ~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i 223 (523)
.++|.+++++++|+++|+.... ....+||+.+..+++|+++|++|+++|++++||++++++.++++++++
T Consensus 20 ~~lP~~v~lil~Gi~lg~~~~~----------~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vli 89 (525)
T TIGR00831 20 IRLPYPIALILAGLLLGLAGLL----------PEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVV 89 (525)
T ss_pred cCCCHHHHHHHHHHHHHhcccc----------CCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999975321 123468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcC
Q psy5406 224 SAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSD 303 (523)
Q Consensus 224 ~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~ 303 (523)
++++++...|++ +++||..|+++||+++||||+++.+++++.++|+++.++++|||++||++++++|.++..+.
T Consensus 90 t~~~v~~~~~~~------~~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf~~~~~~~ 163 (525)
T TIGR00831 90 TTVVVGFSLNWI------LGIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVA 163 (525)
T ss_pred HHHHHHHHHHHH------hcccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence 999999988874 68999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh------
Q psy5406 304 NPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR------ 377 (523)
Q Consensus 304 ~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi------ 377 (523)
.+. +..++......|+...++|+++|+++|++..++.|+.. +++..+..++++++|++|++||.+|.||+
T Consensus 164 ~~~--~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~SgilAvv~a 239 (525)
T TIGR00831 164 LGK--GVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHFSGVIAVVAA 239 (525)
T ss_pred hcC--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 531 12234456778888999999999999999998886532 46677889999999999999999999999
Q ss_pred -----------------------------hhHHHHHHHHHhhhhhcc-cccch-----hHHHHH--------HHHHHHHH
Q psy5406 378 -----------------------------TYSKTLVFLITGLAIFSF-RHRVE-----PALVIW--------SLILCLVG 414 (523)
Q Consensus 378 -----------------------------~l~~~~~Fv~lG~~~~~~-~~~~~-----~~~v~~--------~~~~~~l~ 414 (523)
.++|+++|+++|++++.. ...++ +....+ .+..+...
T Consensus 240 Gl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 319 (525)
T TIGR00831 240 GLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYV 319 (525)
T ss_pred HHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 277899999999998642 11111 111111 12233446
Q ss_pred HHHHHHHHHHHHHhhh---ccCCCcchhhhhhccCchhHHHHHhHhcccCC------cchhhHHHHHHHHHHHHHHhhhh
Q psy5406 415 RACNIFPLAILVNRFR---EHQITRRMMFIMWFSGLRGAISYALSLHLEFS------DETRHVIITSTLIIVLVTTLVFG 485 (523)
Q Consensus 415 R~~~v~~~~~~~~~~~---~~~i~~~~~~~~~~~GlRG~valaLal~~~~~------~~~~~~i~~~~~~vVl~T~li~g 485 (523)
|++.++. ...++.+ +.+++||++.+++|+|+||++++++|+..+.. .+.++.+...++.+|++|+++||
T Consensus 320 r~~~~~~--~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~TllvqG 397 (525)
T TIGR00831 320 RFLWTMK--PFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLLVQG 397 (525)
T ss_pred HHHHHHH--HHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 6655432 2223222 34578999999999999999999999977642 37889999999999999999999
Q ss_pred hhHHHHHHHhCCCCCcc
Q psy5406 486 GSTMPLMKILQTSSNQK 502 (523)
Q Consensus 486 ~~~~pl~~~l~~~~~~~ 502 (523)
.+++|++|+++++++++
T Consensus 398 ~tlp~l~r~l~~~~~~~ 414 (525)
T TIGR00831 398 ISLPIFVKRKFVSEHSE 414 (525)
T ss_pred hhHHHHHHhcCCCCCCh
Confidence 99999999999876643
No 6
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=2.1e-40 Score=363.95 Aligned_cols=359 Identities=21% Similarity=0.245 Sum_probs=291.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
++...++++++.+...+.+|.+ +|.+++++++|+++|+. ++... +.+. . ..+.+.++++++++|++|+
T Consensus 8 ll~~~~ll~l~~~~~~l~~r~~---~P~ll~~il~GillGp~~lg~i~------~~~~-~-~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 8 LLIGALLLLLSILASRLSSRLG---IPSLLLFLAIGMLAGEDGLGGIQ------FDNY-P-LAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHhCccccCCcc------cCcH-H-HHHHHHHHHHHHHHHcCcc
Confidence 3445667778888888877764 89999999999999973 22111 0010 0 1367899999999999999
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCC--CChhH
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALD--VDPVL 277 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~--~~~~l 277 (523)
++|++.+|+++++++.+++.|+++++++++...+++ ++++|.+|+++|+++++|||+++.+++++.+ +++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l------~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWL------LGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 999999999999999999999999999988877765 5899999999999999999999999999999 89999
Q ss_pred HHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q psy5406 278 NMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGL 357 (523)
Q Consensus 278 ~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~l 357 (523)
+.++++||.+||+++++++.+++++..++..+ ..+ ..+..++.++++|+++|+++|++..+++|+.+. +++.....+
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~-~~~~~~~i~ 227 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETG-LSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL-PAEGLYPIL 227 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCc-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhHHHHH
Confidence 99999999999999999999988876432211 112 235678888999999999999999999988753 234466788
Q ss_pred HHHHHHHHHHHHhhcccchh-----------------------------hhHHHHHHHHHhhhhhccccc-chhHHHHHH
Q psy5406 358 MLVFTYAPYALAEGIHLSAR-----------------------------TYSKTLVFLITGLAIFSFRHR-VEPALVIWS 407 (523)
Q Consensus 358 ~l~~~~l~y~lae~lg~SGi-----------------------------~l~~~~~Fv~lG~~~~~~~~~-~~~~~v~~~ 407 (523)
+++.++++|++||.+|.||+ +++++++|+++|+.++..... ..+..++..
T Consensus 228 ~l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~ 307 (562)
T PRK05326 228 VLAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 377789999999998653221 112223334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCCc-chhhHHHHHHHHHHHHHHhhhhh
Q psy5406 408 LILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSD-ETRHVIITSTLIIVLVTTLVFGG 486 (523)
Q Consensus 408 ~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~~-~~~~~i~~~~~~vVl~T~li~g~ 486 (523)
+++++++|+++++.... ..++++||+.+++|+|+||++++++|......+ +.++.++.+++.+|++|+++||.
T Consensus 308 ~~l~~vaR~l~v~l~~~------~~~~~~~e~~~i~~~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~ 381 (562)
T PRK05326 308 LFLILVARPLAVFLSLL------PFRFNLREKLFISWVGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGT 381 (562)
T ss_pred HHHHHHHHHHHHHHHHc------cCCCCHhhhheeeeecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHh
Confidence 55678899999885543 347899999999999999999999998543333 55678889999999999999999
Q ss_pred hHHHHHHHhCCCCCccccc
Q psy5406 487 STMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 487 ~~~pl~~~l~~~~~~~~~~ 505 (523)
+++|+.|++++.++++.++
T Consensus 382 tl~~~a~~l~l~~~~~~~~ 400 (562)
T PRK05326 382 TLPWAARKLGVVVPPEARP 400 (562)
T ss_pred hHHHHHHHcCCCCCCCCCC
Confidence 9999999999988776543
No 7
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=8.4e-39 Score=349.78 Aligned_cols=357 Identities=17% Similarity=0.153 Sum_probs=274.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
...+..++++..++..+++++ .++|++++++++|+++|+. ++.+++ ..|.....+..+ +.++.|++++|.+|+
T Consensus 15 ~~~lG~~lll~~l~s~~lkeR--l~Ls~~~v~Ll~GiilGP~~l~~idP---~~~g~~d~i~le-IteIvL~I~LFa~Gl 88 (810)
T TIGR00844 15 YSCVGIFSSIFSLVSLFVKEK--LYIGESMVASIFGLIVGPHCLNWFNP---LSWGNTDSITLE-ISRILLCLQVFAVSV 88 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--cCCcHHHHHHHHHHHhhhhhhccCCh---hhcccchHHHHH-HHHHHHHHHHHHHHH
Confidence 334444555555666666533 4699999999999999984 333221 112211111123 778999999999999
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHh---hCCCChh
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFH---ALDVDPV 276 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~---~~~~~~~ 276 (523)
+++++.++++|+.+..++++++.++++++++.+|++ .++++|..|+++||+++||||+++.++++ ..++|++
T Consensus 89 ~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~L-----i~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~r 163 (810)
T TIGR00844 89 ELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWIL-----VPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGH 163 (810)
T ss_pred hCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChH
Confidence 999999999999999999999999999999998875 36899999999999999999999999998 4578999
Q ss_pred HHHHHhhhhhccchhHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--Ccch
Q psy5406 277 LNMLVFGESILNDAIAIVLTTSILGSDNP-NMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRK--NPSL 353 (523)
Q Consensus 277 l~~ll~gES~lND~~aivlf~~~~~~~~~-~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~--~~~~ 353 (523)
++.++++||++||++|++++.+.+.+... ...+.......+..+++.+++|+++|+++|++..+++++.+.++ +...
T Consensus 164 LR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~es 243 (810)
T TIGR00844 164 LRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRES 243 (810)
T ss_pred HHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999999999988877665531 11111111224678899999999999999999999999876333 2233
Q ss_pred HHHHHHHHHHHHHHHHhhcccchh------------------------------hhHHHHHHHHHhhhhhccccc-----
Q psy5406 354 EFGLMLVFTYAPYALAEGIHLSAR------------------------------TYSKTLVFLITGLAIFSFRHR----- 398 (523)
Q Consensus 354 ~~~l~l~~~~l~y~lae~lg~SGi------------------------------~l~~~~~Fv~lG~~~~~~~~~----- 398 (523)
...+.+++++.+|.+++.+|.||+ .+++..+|+++|+.++.....
T Consensus 244 fla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~ 323 (810)
T TIGR00844 244 FLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIG 323 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhh
Confidence 456778889999999999999999 277888999999998642211
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCC------c--------
Q psy5406 399 -VEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFS------D-------- 463 (523)
Q Consensus 399 -~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~------~-------- 463 (523)
..|..++.+++++++.|+..++.+..+ .+...+++|+++++|.|+||..++..+...... .
T Consensus 324 ~~~w~~ilLaL~LifVrRPpaVlll~~l----i~~~~s~rErlFigWFGpRGIGSIyyl~~A~~~~~~~~~~~~~~~~~~ 399 (810)
T TIGR00844 324 LDVWRLIILSLVVIFLRRIPAVLILKPL----IPDIKSWREAMFIGHFGPIGVGAVFAAILSKSQLESHLTDEETPLNVT 399 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccCCCHHHHHHheeeccccHHHHHHHHHHHHhhhcccCccccccccc
Confidence 234556667788899999888754332 234569999999999999999999866532110 0
Q ss_pred --------chhhHHHHHHHHHHHHHHhhhhhhHHHHH
Q psy5406 464 --------ETRHVIITSTLIIVLVTTLVFGGSTMPLM 492 (523)
Q Consensus 464 --------~~~~~i~~~~~~vVl~T~li~g~~~~pl~ 492 (523)
...+.++.++..+|+.|+++||.++.|++
T Consensus 400 ~~~~~~~~~~~~~lw~iv~f~V~~SIivHG~S~~~l~ 436 (810)
T TIGR00844 400 PGKGSKHWQLMACIWPITCFSIVTSVIVHGSSVAVIM 436 (810)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 01457899999999999999999999975
No 8
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-39 Score=324.38 Aligned_cols=356 Identities=20% Similarity=0.255 Sum_probs=296.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhh
Q psy5406 121 IFFVL-CVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG 198 (523)
Q Consensus 121 i~~~~-~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G 198 (523)
+++.. ++++++++.+.+..|.+ +|-.+..+.+||+.|.= .+. -++.+ ..+ .....+++|..|+|++|
T Consensus 8 ill~gsvlvivsif~s~~ssrfG---vP~LllFl~iGm~aG~dGlg~---I~fdN----y~~-Ay~vg~lALaiILfdgG 76 (574)
T COG3263 8 ILLLGSVLVIVSIFSSLISSRFG---VPLLLLFLSIGMLAGVDGLGG---IEFDN----YPF-AYMVGNLALAIILFDGG 76 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHHcCCCcccc---cccCc----cHH-HHHHHHHHHHHHhhcCc
Confidence 44444 56666777777777754 89999999999999941 111 11111 011 25677889999999999
Q ss_pred hcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHH
Q psy5406 199 YNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLN 278 (523)
Q Consensus 199 ~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~ 278 (523)
+..+++.+|...++.+.+|.+|+++|+..+|..++|+ ++++|.+++++||++.+||.++|.+++++.++++|++
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~l------l~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~ 150 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL------LNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVA 150 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH------hccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhh
Confidence 9999999999999999999999999999999999886 7999999999999999999999999999999999999
Q ss_pred HHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH
Q psy5406 279 MLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLM 358 (523)
Q Consensus 279 ~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~l~ 358 (523)
.++|-||.-||++|+.+...++++..++.++ .++. .+..|++++..|+++|+..|++..++.+|.+. +....+.+.
T Consensus 151 stLEiESGtNDPmAvfLTitlieli~~get~-l~~~-~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL--d~GL~pil~ 226 (574)
T COG3263 151 STLEIESGSNDPMAVFLTITLIELIAGGETN-LSWG-FLLGFLQQFGLGLLLGLGGGKLLLQLINRINL--DSGLYPILA 226 (574)
T ss_pred hhEEeecCCCCceeeehhHHHHHHHhccccc-cCHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc--ccchhHHHH
Confidence 9999999999999999999999987654332 2333 34448999999999999999999999998864 456788999
Q ss_pred HHHHHHHHHHHhhcccchh-----------------------------hhHHHHHHHHHhhhhhccc-ccchhHHHHHHH
Q psy5406 359 LVFTYAPYALAEGIHLSAR-----------------------------TYSKTLVFLITGLAIFSFR-HRVEPALVIWSL 408 (523)
Q Consensus 359 l~~~~l~y~lae~lg~SGi-----------------------------~l~~~~~Fv~lG~~~~~~~-~~~~~~~v~~~~ 408 (523)
++..++.|.+++.+|.||+ ++++..+|..+|+.+++.+ .......++..+
T Consensus 227 la~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l 306 (574)
T COG3263 227 LAGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSL 306 (574)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHH
Confidence 9999999999999999999 4888899999999986533 222334566678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCCc-chhhHHHHHHHHHHHHHHhhhhhh
Q psy5406 409 ILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSD-ETRHVIITSTLIIVLVTTLVFGGS 487 (523)
Q Consensus 409 ~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~~-~~~~~i~~~~~~vVl~T~li~g~~ 487 (523)
..++++|++.+|+.. + +.+.+++|+.+.+|.|+||+|++.+|...-..+ +..+.++..++.+|+.|.++||.+
T Consensus 307 ~mifvaRP~aV~l~l---~---Pfrf~~~Ek~fvSWvGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~t 380 (574)
T COG3263 307 WMIFVARPLAVFLGL---I---PFRFNRREKLFVSWVGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGST 380 (574)
T ss_pred HHHHHHhHHHHHHhh---c---ccccCccchheeehhhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCc
Confidence 889999999999543 2 345799999999999999999999998544444 788889999999999999999999
Q ss_pred HHHHHHHhCCCCCccc
Q psy5406 488 TMPLMKILQTSSNQKI 503 (523)
Q Consensus 488 ~~pl~~~l~~~~~~~~ 503 (523)
++|..|++++..+.+.
T Consensus 381 l~~~a~~l~~i~p~~~ 396 (574)
T COG3263 381 LPWAAKKLKVIVPPRG 396 (574)
T ss_pred chHHHHhcccccCCCC
Confidence 9999999998876644
No 9
>KOG4505|consensus
Probab=99.97 E-value=6.3e-30 Score=249.66 Aligned_cols=354 Identities=19% Similarity=0.194 Sum_probs=276.8
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHH-HHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHH
Q psy5406 133 LLIHFMLQFHFQYLPESIAIVFLGALIGM-IINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIG 211 (523)
Q Consensus 133 ~~~~~~~~~r~~~lP~~~~~ll~GillG~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~ 211 (523)
+.+.+++++ ..+.|.+...+.|+++|| +.+++++. .|.+...+ +.-+..+.|+.-.|.++.|++++++.++|+
T Consensus 27 l~S~yikek--LllgEa~va~itGlI~Gphvlnlfdp~---~wgn~d~i-t~ei~RvvLcvqvfava~eLPr~Y~l~~w~ 100 (467)
T KOG4505|consen 27 LASLYIKEK--LLLGEATVAVITGLIFGPHVLNLFDPN---SWGNKDYI-TYEISRVVLCVQVFAVAMELPRAYMLEHWR 100 (467)
T ss_pred HHHHHHHHh--HhccchHHhhhhheeechhhhhhcCCc---cccCcchh-hhhhhhhhHhHHHHHHHHhccHHHHHHHHH
Confidence 445555554 569999999999999998 46665443 44443222 345788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhC----CCChhHHHHHhhhhhc
Q psy5406 212 SILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHAL----DVDPVLNMLVFGESIL 287 (523)
Q Consensus 212 ~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~----~~~~~l~~ll~gES~l 287 (523)
+++.+-.+-+.+-+++.+..+|.+ .+++++..+++++++++||||+...++..+- ++|+|+++++..||..
T Consensus 101 Si~vlllpVmi~gwlvs~~fvy~l-----~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGc 175 (467)
T KOG4505|consen 101 SIFVLLLPVMIIGWLVSFGFVYAL-----IPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGC 175 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCC
Confidence 999999999999999999999987 5799999999999999999999999999853 7899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHH
Q psy5406 288 NDAIAIVLTTSILGSDNPNMT--TWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKN--PSLEFGLMLVFTY 363 (523)
Q Consensus 288 ND~~aivlf~~~~~~~~~~~~--~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~--~~~~~~l~l~~~~ 363 (523)
||++++..+...+.+...... ...++ +....+++...|+++|.++|++.+..+|+.+.++- .+....+-+.+++
T Consensus 176 NDGMaipflflai~Ll~h~~~r~~~rdw--v~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~l 253 (467)
T KOG4505|consen 176 NDGMAIPFLFLAIDLLRHKPRRKAGRDW--VCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLAL 253 (467)
T ss_pred CCCcchhHHHHHHHHHhcCchhccCCce--ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 999999999988887653211 11122 35566889999999999999999999999875553 3344566677888
Q ss_pred HHHHHHhhcccchh------------------------------hhHHHHHHHHHhhhhhcccccch------hHHHHHH
Q psy5406 364 APYALAEGIHLSAR------------------------------TYSKTLVFLITGLAIFSFRHRVE------PALVIWS 407 (523)
Q Consensus 364 l~y~lae~lg~SGi------------------------------~l~~~~~Fv~lG~~~~~~~~~~~------~~~v~~~ 407 (523)
++..+.+.+|.+.+ .+++..+|+|.|..++.....+. |..++.+
T Consensus 254 fc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvils 333 (467)
T KOG4505|consen 254 FCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILS 333 (467)
T ss_pred HHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHH
Confidence 88999999998887 38888999999999975443332 4567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhcccCC----c-------------chhhHHH
Q psy5406 408 LILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFS----D-------------ETRHVII 470 (523)
Q Consensus 408 ~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~~~----~-------------~~~~~i~ 470 (523)
+.++++.|+..++++.+... .-.+|||+++.+|.|+-|.-++..|+..... . ...+.++
T Consensus 334 i~iif~RRip~v~l~kp~iP----dikswkEALFvGhFGPIGVgAly~allar~~le~~ep~~~i~~~e~~~w~li~~iw 409 (467)
T KOG4505|consen 334 ITIIFIRRIPAVYLMKPLIP----DIKSWKEALFVGHFGPIGVGALYYALLARKELETLEPEKSIYESETVFWTLIEIIW 409 (467)
T ss_pred HHHHHhcccceEEEeccCCc----chhhHHHHHHhccCCCccHHHHHHHHHHHhhhccCCcccccCCccccchhhhhhhh
Confidence 88888899888875554432 2249999999999999999999888743211 0 1224578
Q ss_pred HHHHHHHHHHHhhhhhhHHH--HHHHhCCCCCccc
Q psy5406 471 TSTLIIVLVTTLVFGGSTMP--LMKILQTSSNQKI 503 (523)
Q Consensus 471 ~~~~~vVl~T~li~g~~~~p--l~~~l~~~~~~~~ 503 (523)
..+-.+|+.|+++||.+..- +.|+++.-...++
T Consensus 410 pivsf~vlsSIiVHG~sv~~~tl~krl~tl~l~~~ 444 (467)
T KOG4505|consen 410 PIVSFTVLSSIIVHGSSVAMYTLGKRLNTLSLYET 444 (467)
T ss_pred hhhHHHHHHHHHhccchhhHHHHHhhhhhhhhhcc
Confidence 88889999999999988765 4566654444333
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.96 E-value=9e-32 Score=282.32 Aligned_cols=341 Identities=21% Similarity=0.288 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHH
Q psy5406 129 ALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQ 208 (523)
Q Consensus 129 ~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~ 208 (523)
.++.+.+...+|. ++|++++++++|+++|+.....-+++ ..+.+.+.++++++++|++|+|+|.+++||
T Consensus 6 ~~~~~~~~l~~r~---~iP~~i~~i~~Gi~lg~~~~~~~~~~--------~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 6 LLAFVAGILFRRL---GIPSIIGYILVGIVLGPSGLGLLEPD--------NPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred ehHHHHHHHHHHh---CCCHHHHHHHheeehhhhhhhhccch--------hhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3344444455554 49999999999999998643211111 123467899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccCCCHHHHHHHhccccCccHHHHHHHHhh-CCCChhHHHHHhhhhh
Q psy5406 209 NIGSILVFAIIGTTISAFVIGAGVYI-LGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHA-LDVDPVLNMLVFGESI 286 (523)
Q Consensus 209 ~~~~il~la~~g~~i~~~~v~~~~~~-l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~-~~~~~~l~~ll~gES~ 286 (523)
++++.+..++.++++++..++..+++ . ...++++.+++++|+++++|||+.+.++++| .+.++++++++.+|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 150 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFL----FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESV 150 (380)
T ss_dssp -------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhh----ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhch
Confidence 99999999999999998886777663 1 1268999999999999999999999999955 5779999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q psy5406 287 LNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPY 366 (523)
Q Consensus 287 lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y 366 (523)
+||..+++++.+.....+. +...+.......++..+..+.++|+..+++..+..|+. +++++.+...+++.++..|
T Consensus 151 i~d~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 226 (380)
T PF00999_consen 151 INDIIAIILLSILISLAQA--SGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA--SPSSEIFILLVLALILLLY 226 (380)
T ss_dssp TTTTTTTTTT----------------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhhhcc--cccccccchhcchhhhhhhheeeecccchHHHHhhhhc--cccchhhHHHHHHHHhhhc
Confidence 9999999999999888721 22334455566666766667777777766666655553 2456678899999999999
Q ss_pred HHHhhcccchh----------------------------hhHHHHHHHHHhhhhhcccc---cchhHHHHHHHHHHHHHH
Q psy5406 367 ALAEGIHLSAR----------------------------TYSKTLVFLITGLAIFSFRH---RVEPALVIWSLILCLVGR 415 (523)
Q Consensus 367 ~lae~lg~SGi----------------------------~l~~~~~Fv~lG~~~~~~~~---~~~~~~v~~~~~~~~l~R 415 (523)
+++|.+|.||+ .++.+++|+++|+.++.... ...+...+...+.++++|
T Consensus 227 ~~a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k 306 (380)
T PF00999_consen 227 GLAEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGK 306 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhh
Confidence 99999999999 27778999999999964322 223333444455666899
Q ss_pred HHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy5406 416 ACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKI 494 (523)
Q Consensus 416 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~ 494 (523)
.++++..++. .+.++|++..++|++. ||.++++++......+...+.++..+..++++|++++|..++|+++|
T Consensus 307 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~~ 380 (380)
T PF00999_consen 307 FIGVYLASRL------FGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLRK 380 (380)
T ss_dssp ----------------------HHHHTTTTSS--HHHHHHHHHHHHH---------------------------------
T ss_pred hceeehhhhh------cccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhcC
Confidence 9998866543 3679999999999999 99999999986655554445568888999999999999999999886
No 11
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=99.92 E-value=1.3e-22 Score=224.77 Aligned_cols=336 Identities=15% Similarity=0.124 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
++.+++++..+.+...+++|.| +|.+++++++|+++||. ++...+ .. +-+.+.++.+.+++|..|+
T Consensus 7 l~~~~~~l~~a~i~~~l~~rl~---lp~vlgyilaGillGP~~lg~i~~--------~~--~i~~laelGvv~LlF~iGL 73 (621)
T PRK03562 7 LIQALIYLGAAVLIVPIAVRLG---LGSVLGYLIAGCIIGPWGLRLVTD--------VE--SILHFAEFGVVLMLFVIGL 73 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhCcccccCCCC--------HH--HHHHHHHHHHHHHHHHHHh
Confidence 4446667777788888887765 89999999999999983 322211 11 1256888999999999999
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC-ChhHH
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV-DPVLN 278 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~-~~~l~ 278 (523)
|+|++++++.++.++.++..++++++.+.+...++ ++++|..++++|++++.|+++.+.++++|.+. +.+.+
T Consensus 74 El~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~-------~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G 146 (621)
T PRK03562 74 ELDPQRLWKLRRSIFGGGALQMVACGGLLGLFCML-------LGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMG 146 (621)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchH
Confidence 99999999999999999999999998777666555 47899999999999999999999999999975 88999
Q ss_pred HHHhhhhhccchhHHHHHHHHHhcCCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcchHHH
Q psy5406 279 MLVFGESILNDAIAIVLTTSILGSDNPNMT-TWEAVLTGFNHFCLMFFASAGIGVLFA-LISALLLKYVDLRKNPSLEFG 356 (523)
Q Consensus 279 ~ll~gES~lND~~aivlf~~~~~~~~~~~~-~~~~~~~~l~~fl~~~~gsi~iG~~~G-~~~~~ll~~~~~~~~~~~~~~ 356 (523)
+...+-.++||..+++++.++..+...... +....+..+ ...++.+++.++.| ++..+++++...++.++....
T Consensus 147 ~~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~ 222 (621)
T PRK03562 147 RSAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSA----LKVAGALALVVLGGRYVTRPALRFVARSGLREVFTA 222 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 999999999999999988887655432111 111111111 11222233333333 345556666643444555667
Q ss_pred HHHHHHHHHHHHHhhcccchh---------------------------hhHHHHHHHHHhhhhhcccccchhHHHHHHHH
Q psy5406 357 LMLVFTYAPYALAEGIHLSAR---------------------------TYSKTLVFLITGLAIFSFRHRVEPALVIWSLI 409 (523)
Q Consensus 357 l~l~~~~l~y~lae~lg~SGi---------------------------~l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~ 409 (523)
.++.++++..+++|.+|+|.. .++-+++|+.+|+.++......++..++..++
T Consensus 223 ~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~ 302 (621)
T PRK03562 223 VALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLL 302 (621)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHH
Confidence 778888999999999999988 26678999999999964222223333333445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhhh
Q psy5406 410 LCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGG 486 (523)
Q Consensus 410 ~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g~ 486 (523)
..+++|+++++..++. .+++++++..+++.-. ||..+++++......+...+..+.....++++|+++.+.
T Consensus 303 ~~~~~K~~~~~~~~~~------~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~ 374 (621)
T PRK03562 303 GFLAIKIAMLWLLARP------LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPL 374 (621)
T ss_pred HHHHHHHHHHHHHHHH------hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5678898888865543 3668999999987544 899998877644333334444555555667777666543
No 12
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.1e-22 Score=208.34 Aligned_cols=351 Identities=17% Similarity=0.183 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH-HHhhhhcccccccccccccChhHhHHHhhHHHHHHhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGM-IINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG 198 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G 198 (523)
....+..++..+.+..++++|.| +|.+++++++|+++|| .......+ .+. -+.+.++.+.+++|.+|
T Consensus 7 ~l~~~~iiL~~a~i~~~l~~rl~---lp~vlg~llaGiilGp~~~~~~~~~-------~~~--i~~laelGvi~LlF~~G 74 (397)
T COG0475 7 ILLQLLILLLVAVILGPLFKRLG---LPPVLGYLLAGIILGPWGLLLIIES-------SEI--IELLAELGVVFLLFLIG 74 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHhcCcccccccCCc-------hHH--HHHHHHHhHHHHHHHHH
Confidence 34456778888888888888765 8999999999999998 22211110 011 24688899999999999
Q ss_pred hcCCcHhHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCC-CChh
Q psy5406 199 YNLHKGNFFQNIGS-ILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALD-VDPV 276 (523)
Q Consensus 199 ~~l~~~~~~~~~~~-il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~-~~~~ 276 (523)
+|.|.+++||+.++ .+..+..+...++.......+. .+++++..++++|++++.|+.+.+.++++|+| .+++
T Consensus 75 LE~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~ 148 (397)
T COG0475 75 LEFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLG------ILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTR 148 (397)
T ss_pred HCcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH------HhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999 6666666665553333222221 15899999999999999999999999999985 5899
Q ss_pred HHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcchHH
Q psy5406 277 LNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFA-LISALLLKYVDLRKNPSLEF 355 (523)
Q Consensus 277 l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G-~~~~~ll~~~~~~~~~~~~~ 355 (523)
.+++..+-.+++|..+++++.++..+.+++......+...+........ +-...| ++..++.|+....++++...
T Consensus 149 ~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~----~~l~~g~~l~~~~~r~~~~~~~~e~~~ 224 (397)
T COG0475 149 EGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLA----LLLLLGRYLLPPLFRRVAKTESSELFI 224 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999876543322222222222211111 112223 56666777766446677888
Q ss_pred HHHHHHHHHHHHHHhhcccchh----------------------------h-hHHHHHHHHHhhhhhcccccchhHHHHH
Q psy5406 356 GLMLVFTYAPYALAEGIHLSAR----------------------------T-YSKTLVFLITGLAIFSFRHRVEPALVIW 406 (523)
Q Consensus 356 ~l~l~~~~l~y~lae~lg~SGi----------------------------~-l~~~~~Fv~lG~~~~~~~~~~~~~~v~~ 406 (523)
..++.+++...+++|.+|.|.+ + ++-+++|+.+|++++......++...+.
T Consensus 225 ~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~ 304 (397)
T COG0475 225 LFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILL 304 (397)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHH
Confidence 9999999999999999999988 3 7788999999999965443344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhh
Q psy5406 407 SLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFG 485 (523)
Q Consensus 407 ~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g 485 (523)
......+.|.++++...+.. |.++|++...++..- ||..+++++-.... +...+..+..++.+.++++.+..
T Consensus 305 ~~~~~i~~K~~~~~~~~~~~------g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~ 377 (397)
T COG0475 305 LVALAILGKILGAYLAARLL------GFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILP 377 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHH
Confidence 66677889999888665543 357777777774332 55666665543222 24445555555555555555544
Q ss_pred hhHHHHHHHhCCCC
Q psy5406 486 GSTMPLMKILQTSS 499 (523)
Q Consensus 486 ~~~~pl~~~l~~~~ 499 (523)
...+++.++...++
T Consensus 378 ~~~~~~~~~~~~~~ 391 (397)
T COG0475 378 LLTPILLKRLLKKS 391 (397)
T ss_pred HHHHHHHHHhhccc
Confidence 55566666554433
No 13
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=99.91 E-value=4.8e-22 Score=218.76 Aligned_cols=342 Identities=12% Similarity=0.082 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH-hhhhcccccccccccccChhHhHHHhhHHHHHHhhhcC
Q psy5406 123 FVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMII-NLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNL 201 (523)
Q Consensus 123 ~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~-~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l 201 (523)
.+..+++.+.+..++++|.| +|.+++++++|+++||.. +...+ . ...+.+.++.+.+++|..|+|+
T Consensus 10 ~~~~~l~~a~~~~~l~~rl~---~P~ivg~IlaGillGp~~lg~~~~--------~--~~~~~la~lGli~llF~~Gle~ 76 (558)
T PRK10669 10 TIVGGLVLAFILGMLANRLR---ISPLVGYLLAGVLAGPFTPGFVAD--------T--KLAPELAELGVILLMFGVGLHF 76 (558)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhhCccccccccc--------h--HHHHHHHHHHHHHHHHHhHhcC
Confidence 34566777877888877754 899999999999999842 22111 1 1236789999999999999999
Q ss_pred CcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCC-CChhHHHH
Q psy5406 202 HKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALD-VDPVLNML 280 (523)
Q Consensus 202 ~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~-~~~~l~~l 280 (523)
|.+++|+.++..+..+..+++++++......+. +++++..++++|++++.|+++.+.++++|++ .+++.+++
T Consensus 77 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 77 SLKDLMAVKSIAIPGAIAQIAVATLLGMALSAV-------LGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 999999998776666677777665444333333 4799999999999999999999999999987 48889999
Q ss_pred HhhhhhccchhHHHHHHHHHhcCCC---CCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q psy5406 281 VFGESILNDAIAIVLTTSILGSDNP---NMTTWEAV-LTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFG 356 (523)
Q Consensus 281 l~gES~lND~~aivlf~~~~~~~~~---~~~~~~~~-~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~ 356 (523)
..+.+++||..+++++.++..+... +..+.... ..........++..+...++..+...++.++...++.++....
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l 229 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTL 229 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 9999999999998888776554321 11111111 1111111111121222333334555556665543333333344
Q ss_pred HHHHHHHHHH-HHHhhcccchh---------------------------hhHHHHHHHHHhhhhhcccccchhHHHHHHH
Q psy5406 357 LMLVFTYAPY-ALAEGIHLSAR---------------------------TYSKTLVFLITGLAIFSFRHRVEPALVIWSL 408 (523)
Q Consensus 357 l~l~~~~l~y-~lae~lg~SGi---------------------------~l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~ 408 (523)
..+.++++.. ..+|.+|+|.+ +++-+++|+.+|+.++......++..++..+
T Consensus 230 ~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~ 309 (558)
T PRK10669 230 SVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATL 309 (558)
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Confidence 4455555443 45699999988 2567889999999986432212233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhhhh
Q psy5406 409 ILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGS 487 (523)
Q Consensus 409 ~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g~~ 487 (523)
++.+++|.++++..++. .+.++|+++..+..-. ||..++.++......+...+..+...+.++++|+++.+..
T Consensus 310 ~~~~v~K~~~~~~~~~~------~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l 383 (558)
T PRK10669 310 AIIVFGKSLAAFFLVRL------FGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVL 383 (558)
T ss_pred HHHHHHHHHHHHHHHHH------hCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55678888888755432 4568999999886544 9999999887655555566667777777888888887655
Q ss_pred HHH
Q psy5406 488 TMP 490 (523)
Q Consensus 488 ~~p 490 (523)
.+.
T Consensus 384 ~~~ 386 (558)
T PRK10669 384 FTL 386 (558)
T ss_pred HHH
Confidence 443
No 14
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.91 E-value=1.8e-22 Score=202.78 Aligned_cols=227 Identities=15% Similarity=0.169 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHH
Q psy5406 129 ALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFF 207 (523)
Q Consensus 129 ~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~ 207 (523)
+++.+.+.+.+|.| +|++++++++|+++||. ++..++. . .-+.+.++.+.+++|.+|+|+|++++|
T Consensus 2 ~~a~~~~~l~~~l~---lP~~v~~il~GillGp~~lg~i~~~--------~--~~~~l~~igl~~llF~~Gl~~d~~~l~ 68 (273)
T TIGR00932 2 LAAVLAVPLSRRLG---IPSVLGYLLAGVLIGPSGLGLISNV--------E--GVNHLAEFGVILLMFLIGLELDLERLW 68 (273)
T ss_pred cHHHHHHHHHHHhC---CCHHHHHHHHHHHhCcccccCCCCh--------H--HHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 34556667777754 89999999999999974 2221111 0 125678899999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC-ChhHHHHHhhhhh
Q psy5406 208 QNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV-DPVLNMLVFGESI 286 (523)
Q Consensus 208 ~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~-~~~l~~ll~gES~ 286 (523)
|+++....++..+++++++.++...++. +++++..++++|+++++|||..+.++++|++. +++.++++.+|+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~ 142 (273)
T TIGR00932 69 KLRKAAFGVGVLQVLVPGVLLGLLLGHL------LGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILL 142 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHH
Confidence 9999999999999999977777755443 47999999999999999999999999999986 7899999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH
Q psy5406 287 LNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPY 366 (523)
Q Consensus 287 lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y 366 (523)
+||.++++++.+.....++......+ ....+.......++.+++.++...++.|+.+.+++.+.+...++.+.+..+
T Consensus 143 ~~D~~~i~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (273)
T TIGR00932 143 FQDIAVVPLLALLPLLATSASTEHVA---LALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSA 219 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 99999999999998776532212112 222333444455566777777777777776544445677888899999999
Q ss_pred HHHhhcccchh
Q psy5406 367 ALAEGIHLSAR 377 (523)
Q Consensus 367 ~lae~lg~SGi 377 (523)
.++|.+|.|++
T Consensus 220 ~la~~~g~s~~ 230 (273)
T TIGR00932 220 YFADLLGLSMA 230 (273)
T ss_pred HHHHHhCCcHH
Confidence 99999999988
No 15
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=99.91 E-value=2.5e-21 Score=214.16 Aligned_cols=331 Identities=11% Similarity=0.080 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-HhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcC
Q psy5406 123 FVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNL 201 (523)
Q Consensus 123 ~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l 201 (523)
.+++++..+.+...+.+|.| +|.+++++++|+++||. ++..++. . .-+.+.++.+.+++|..|+|+
T Consensus 9 ~~~~~l~~a~~~~~l~~rl~---~p~ilg~ilaGillGP~~lg~i~~~--------~--~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 9 AGVLFLFAAVVAVPLAQRLG---IGAVLGYLLAGIAIGPWGLGFISDV--------D--EILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHHhccccccCCCcH--------H--HHHHHHHHHHHHHHHHHHhcC
Confidence 34556667777777777764 89999999999999983 3322110 1 124688899999999999999
Q ss_pred CcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC-ChhHHHH
Q psy5406 202 HKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV-DPVLNML 280 (523)
Q Consensus 202 ~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~-~~~l~~l 280 (523)
|.+++++..+.++.++..++++++++++...+++ +++|..++++|..++.|+++.+.++++|.+. +.+.+.+
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~-------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLT-------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 9999999999999999999999988777666553 6889999999999999999999999999986 6667899
Q ss_pred HhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCcchHHHHHH
Q psy5406 281 VFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFA-LISALLLKYVDLRKNPSLEFGLML 359 (523)
Q Consensus 281 l~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G-~~~~~ll~~~~~~~~~~~~~~l~l 359 (523)
..+-.++||..+++++.++..+...... ...+...... +..+++.++.| ++..+++++....+.++.....++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 222 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADE-HFDWMKIGMK-----VLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAAL 222 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-chHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 9999999999888888777555432111 1112111111 11111222223 344556665543334455667777
Q ss_pred HHHHHHHHHHhhcccchh---------------------------hhHHHHHHHHHhhhhhcccccchhHHHHHHHHHHH
Q psy5406 360 VFTYAPYALAEGIHLSAR---------------------------TYSKTLVFLITGLAIFSFRHRVEPALVIWSLILCL 412 (523)
Q Consensus 360 ~~~~l~y~lae~lg~SGi---------------------------~l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~ 412 (523)
.++++..+++|.+|+|.. .++.+++|+.+|+.++......++..++...+..+
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l 302 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLV 302 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHH
Confidence 778888889999999988 26778999999999864322223444444456677
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCcchhhhhhcc-CchhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhh
Q psy5406 413 VGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFG 485 (523)
Q Consensus 413 l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~-GlRG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g 485 (523)
++|+++++.... ..++++++++.++.. ..||..++.++......+-..+..+...+.++++|+++.+
T Consensus 303 ~~K~~~~~~~~~------~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP 370 (601)
T PRK03659 303 AVKGLVLYLLAR------LYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTP 370 (601)
T ss_pred HHHHHHHHHHHH------HhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 889999886554 246688888877643 4499999887765433333333444444555666655543
No 16
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=99.90 E-value=3.6e-21 Score=218.93 Aligned_cols=344 Identities=12% Similarity=0.079 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH-Hhhhhcccccccccccc-cChhHhHHHhhHHHHHHh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMI-INLMSNKNIANWHKEET-FSPTAFFLVLLPPIIFES 197 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i-~~~~~~~~~~~~~~~~~-~~~~~~~~i~Lp~IlF~~ 197 (523)
-++.+.++++++.++..+++|.| +|.+++++++|+++||- ++.... ....+.+... ..-+.+.++.+.+++|.+
T Consensus 44 ~llql~lil~~a~l~~~ll~rl~---~P~ivgeIlaGIlLGPs~lg~i~~-~~~~~fp~~~~~~l~~la~lGlillmFli 119 (832)
T PLN03159 44 FILQLTLVVVTTRLLVFILKPFR---QPRVISEILGGVILGPSVLGQSEV-FANTIFPLRSVMVLETMANLGLLYFLFLV 119 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHhcCHhhhCcChh-hhhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777654 89999999999999984 333211 0000011000 013678899999999999
Q ss_pred hhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC-Chh
Q psy5406 198 GYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV-DPV 276 (523)
Q Consensus 198 G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~-~~~ 276 (523)
|+|+|.+.+||+++..+..+..++++++++.....++++.. .........++++|.++|.|+..++.++++|++. ..+
T Consensus 120 GLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~-~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~ 198 (832)
T PLN03159 120 GVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQV-SRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTE 198 (832)
T ss_pred HHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCc
Confidence 99999999999999999999999999966654444443210 0001123456889999999999899999999986 899
Q ss_pred HHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcchHH
Q psy5406 277 LNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRK-NPSLEF 355 (523)
Q Consensus 277 l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~~-~~~~~~ 355 (523)
++++..+.+++||..+++++.++..+.......... +..++..++..+++.+++-....++.|+....+ ......
T Consensus 199 ~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~----l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v 274 (832)
T PLN03159 199 LGRIAMSAALVNDMCAWILLALAIALAENDSTSLAS----LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYI 274 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchh
Confidence 999999999999999999998887765432111111 111111111112222233344445555543211 123445
Q ss_pred HHHHHHHHHHHHHHhhcccchh----------------------------hhHHHHHHHHHhhhhhccccc--chhHHHH
Q psy5406 356 GLMLVFTYAPYALAEGIHLSAR----------------------------TYSKTLVFLITGLAIFSFRHR--VEPALVI 405 (523)
Q Consensus 356 ~l~l~~~~l~y~lae~lg~SGi----------------------------~l~~~~~Fv~lG~~~~~~~~~--~~~~~v~ 405 (523)
.++++.++++.+++|.+|+|.+ .++-+++|+.+|+.++..... ..+...+
T Consensus 275 ~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~ 354 (832)
T PLN03159 275 CLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLV 354 (832)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHH
Confidence 6677777888999999999988 266789999999998642221 1222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHH
Q psy5406 406 WSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVL 478 (523)
Q Consensus 406 ~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl 478 (523)
..+++.+++|+++.+..++. .++++++.+.+++..- ||.++++++......+...+..++..+.+++
T Consensus 355 ~liv~a~~gK~~g~~l~a~~------~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~av 422 (832)
T PLN03159 355 LVIIMASAGKIMGTIIIAFF------YTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAV 422 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHH
Confidence 33455567888877755542 4679999999996544 9999999887554444444555555444443
No 17
>KOG1965|consensus
Probab=99.52 E-value=2.9e-15 Score=158.50 Aligned_cols=54 Identities=52% Similarity=0.704 Sum_probs=50.9
Q ss_pred CcchhhHHhhhhccccCCChHHHHHHHHHHHHHHhhhhhhhhhhcccccccccC
Q psy5406 1 MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNT 54 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~~n~s~~~~~~~~~~~~~~~~~~e~~if~~lg~~~~~~~~ 54 (523)
||++||||+|+||+++|+|++||.++||+|+++||+||||||+|+|++++..++
T Consensus 293 vtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k 346 (575)
T KOG1965|consen 293 VTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQK 346 (575)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 589999999999999999999999999999999999999999999999886553
No 18
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.2e-11 Score=120.67 Aligned_cols=336 Identities=16% Similarity=0.170 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhc
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYN 200 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~ 200 (523)
+-.+..-+.++++.+.+..|.| +|+.++++++|++.||.... +..+....+ .+.++....+||..|++
T Consensus 8 i~tiv~gl~lAFl~G~lA~rlr---lsPLVGyL~AGv~~gpftpG--------Fvad~~La~-~LAelGViLLmFgvGLh 75 (408)
T COG4651 8 ITTIVGGLVLAFLLGALANRLR---LSPLVGYLLAGVLAGPFTPG--------FVADQTLAP-ELAELGVILLMFGVGLH 75 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCchHHHHHHHHhcCCCCCC--------cccchhHHH-HHHHhhHHHHHHhcchh
Confidence 3345667778888888887765 89999999999999974321 111222333 47888999999999999
Q ss_pred CCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC-ChhHHH
Q psy5406 201 LHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV-DPVLNM 279 (523)
Q Consensus 201 l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~-~~~l~~ 279 (523)
.+.|++..... .|++|.+..-......-+.+ .+..||++...++||-.+|-.+.+..+.-++|.+. +.+-++
T Consensus 76 fslkdLLavk~----iAipgAl~qia~at~lg~gL---~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~ 148 (408)
T COG4651 76 FSLKDLLAVKA----IAIPGALAQIALATLLGMGL---SSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGR 148 (408)
T ss_pred eeHHHHhhHHH----HhcchHHHHHHHHHHHHhHH---HHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCce
Confidence 99998865443 34555554433322221111 12479999999999999999999999999998764 667777
Q ss_pred HHhhhhhccchhHHHHHHHHHhcC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcchHH
Q psy5406 280 LVFGESILNDAIAIVLTTSILGSD---NPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALIS-ALLLKYVDLRKNPSLEF 355 (523)
Q Consensus 280 ll~gES~lND~~aivlf~~~~~~~---~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~-~~ll~~~~~~~~~~~~~ 355 (523)
+-.|=-+..|...++.....-.++ +.+..+.......+...+.....-+.++.++|.-. .|++.++......+...
T Consensus 149 iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~ 228 (408)
T COG4651 149 IAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFT 228 (408)
T ss_pred EEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 777888888876665555443332 22222333334444445555666677888888544 45666665433444445
Q ss_pred HHHHHHHHHH-HHHHhhcccchh---------------------------hhHHHHHHHHHhhhhhcccccchhHHHHHH
Q psy5406 356 GLMLVFTYAP-YALAEGIHLSAR---------------------------TYSKTLVFLITGLAIFSFRHRVEPALVIWS 407 (523)
Q Consensus 356 ~l~l~~~~l~-y~lae~lg~SGi---------------------------~l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~ 407 (523)
...+.+++.. |.-+|.+|+|-- +.+..++|+-+||..++.....++..+..+
T Consensus 229 L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlat 308 (408)
T COG4651 229 LAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLAT 308 (408)
T ss_pred HHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHH
Confidence 5555555544 555677887765 467778999999998765555566566777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCC----cchhhHHHHHHHHHHHHHHh
Q psy5406 408 LILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFS----DETRHVIITSTLIIVLVTTL 482 (523)
Q Consensus 408 ~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~----~~~~~~i~~~~~~vVl~T~l 482 (523)
+.+++.+|-+..| ++.+.+ +.+.+..+.++-+-- .|.-++.++-..-.. +..++.+.+. -+.|++
T Consensus 309 llii~~gKs~aaf---~ivr~F---g~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlag----ailsIl 378 (408)
T COG4651 309 LLIILFGKSVAAF---FIVRAF---GHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAG----AILSIL 378 (408)
T ss_pred HHHHHhhhHHHHH---HHHHHh---CCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHH----HHHHHH
Confidence 7888888887766 333333 446666776664433 677777766432211 2345555444 445555
Q ss_pred hhh
Q psy5406 483 VFG 485 (523)
Q Consensus 483 i~g 485 (523)
.++
T Consensus 379 ~nP 381 (408)
T COG4651 379 LNP 381 (408)
T ss_pred HhH
Confidence 543
No 19
>KOG1966|consensus
Probab=99.16 E-value=1.1e-11 Score=131.13 Aligned_cols=54 Identities=35% Similarity=0.578 Sum_probs=52.0
Q ss_pred CcchhhHHhhhhccccCCChHHHHHHHHHHHHHHhhhhhhhhhhcccccccccC
Q psy5406 1 MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNISISNT 54 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~~n~s~~~~~~~~~~~~~~~~~~e~~if~~lg~~~~~~~~ 54 (523)
+|+.|||++|+||...|+|+++.+|+||++||+|++|||+||+|||+|.++++|
T Consensus 295 lAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h 348 (670)
T KOG1966|consen 295 LAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNH 348 (670)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcc
Confidence 589999999999999999999999999999999999999999999999998875
No 20
>KOG1650|consensus
Probab=99.13 E-value=3.3e-09 Score=120.04 Aligned_cols=359 Identities=14% Similarity=0.083 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccc-cccChhHhHHHhhHHHHHHhhh
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKE-ETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~-~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
++.+.+++.++-++..++++.| .|..+..++.|+++||....-.........+. ...--+.+..+..-+.+|..|+
T Consensus 25 ~lq~~~i~~~~~~~~~~l~pl~---qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl 101 (769)
T KOG1650|consen 25 LLQIILIIVLSRLLHILLKPLG---QPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc---cchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666655555555554 89999999999999985432221111111111 0111266777778889999999
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcccccC--CCHHHHHHHhccccCccHHHHHHHHhhCCC-C
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILG--LADVAYK--LSFVESFAFGSLISAVDPVATVAIFHALDV-D 274 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~--~~~~~~~--l~~~~alllGailsaTDPv~v~~il~~~~~-~ 274 (523)
++|.+.+||+.+....+++.++++++.......+... ......+ .....=...+...+.|.=-.+..++.|+++ .
T Consensus 102 ~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~ 181 (769)
T KOG1650|consen 102 EIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN 181 (769)
T ss_pred hhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence 9999999999999888998898888554333333220 0000011 111134556677888887777799999987 7
Q ss_pred hhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcch
Q psy5406 275 PVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLR-KNPSL 353 (523)
Q Consensus 275 ~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~~~~-~~~~~ 353 (523)
++++.+....+++||..++.++.....+.+..... .......+...++..+..=.++=....|+.|+...+ +....
T Consensus 182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~ 258 (769)
T KOG1650|consen 182 SELGRLALSAAVVNDVAGWILLALALAFSSELKLS---PLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDA 258 (769)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCc---chHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccc
Confidence 88999999999999999999888888776532211 111112222211111111111122333444442111 12234
Q ss_pred HHHHHHHHHHHHHHHHhhcc-cchh-----------------------------hhHHHHHHHHHhhhhhcccccchhHH
Q psy5406 354 EFGLMLVFTYAPYALAEGIH-LSAR-----------------------------TYSKTLVFLITGLAIFSFRHRVEPAL 403 (523)
Q Consensus 354 ~~~l~l~~~~l~y~lae~lg-~SGi-----------------------------~l~~~~~Fv~lG~~~~~~~~~~~~~~ 403 (523)
.....+...+.+..+.+.++ .+++ .++-++.|...|+..+.... ..+..
T Consensus 259 ~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i-~~~~~ 337 (769)
T KOG1650|consen 259 YICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRI-NKWGA 337 (769)
T ss_pred eehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHH-HHHHH
Confidence 45666677777777777765 4422 25556677888887743211 12444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCc-hhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHh
Q psy5406 404 VIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISYALSLHLEFSDETRHVIITSTLIIVLVTTL 482 (523)
Q Consensus 404 v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~Gl-RG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~l 482 (523)
....+.....++++++...+.. .|+++++.+.++.... ||.+.+..-......+...+..++..+...++++.
T Consensus 338 ~~~~i~~~~~~K~l~t~~~sl~------~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~ 411 (769)
T KOG1650|consen 338 LIRTILIFGAVKLLSTLGTSLY------CKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTF 411 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHh
Confidence 4445566677788777655442 4679999999885444 99988876554433333444445444444444444
Q ss_pred hhhhhHHHHHHHhC
Q psy5406 483 VFGGSTMPLMKILQ 496 (523)
Q Consensus 483 i~g~~~~pl~~~l~ 496 (523)
.++|+++.+.
T Consensus 412 ----I~~~~l~~~y 421 (769)
T KOG1650|consen 412 ----ITPPLLMFLY 421 (769)
T ss_pred ----hHHHHHHHhc
Confidence 3566666554
No 21
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.25 E-value=0.00044 Score=72.90 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=71.4
Q ss_pred hHHHhhHHHHHHhhhcCCc-------HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhcccc
Q psy5406 185 FFLVLLPPIIFESGYNLHK-------GNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLIS 257 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~-------~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGails 257 (523)
.-+.+..+--|..|+|+++ ++.||...+ ..-|+.|+++++++ |+.- +..-....-=-++-.
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPali-----y~~~------n~~~~~~~~GW~Ip~ 133 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPALI-----YVAV------NLAGGGALRGWAIPT 133 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHHH-----HHHH------hCCchhhhhhhhhhh
Confidence 3445556677889999954 444444444 34567777777433 3321 221112222226778
Q ss_pred CccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 258 AVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 258 aTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
+||-+.++.++..+ ++|.+++..+.+-++.||..++++-.++.
T Consensus 134 ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY 178 (423)
T PRK14853 134 ATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY 178 (423)
T ss_pred hhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc
Confidence 99999999999886 46999999999999999999999888776
No 22
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=98.10 E-value=1.3e-06 Score=95.95 Aligned_cols=50 Identities=36% Similarity=0.632 Sum_probs=48.1
Q ss_pred CcchhhHHhhhhccccCCChHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q psy5406 1 MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLGKNIS 50 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~~n~s~~~~~~~~~~~~~~~~~~e~~if~~lg~~~~ 50 (523)
+|+++||++|+||.++|+|+++|.+.+++++++++++|+++|+|+|+++.
T Consensus 263 LAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~ 312 (559)
T TIGR00840 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLV 312 (559)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999875
No 23
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=96.93 E-value=0.037 Score=57.52 Aligned_cols=228 Identities=16% Similarity=0.193 Sum_probs=126.3
Q ss_pred HHhhHHHHHHhhhcCCcHhHH----HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc---cccCCCHHHHHHHhcccc
Q psy5406 187 LVLLPPIIFESGYNLHKGNFF----QNIGS--ILVFAIIGTTISAFVIGAGVYILGLAD---VAYKLSFVESFAFGSLIS 257 (523)
Q Consensus 187 ~i~Lp~IlF~~G~~l~~~~~~----~~~~~--il~la~~g~~i~~~~v~~~~~~l~~~~---~~~~l~~~~alllGails 257 (523)
+....+--|..|+|++++-.. +..+. -..-|+.|++.++ .+|..-+.+ ..-|| ++=.
T Consensus 58 DgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa-----~iy~~~n~~~~~~~~GW---------~IP~ 123 (373)
T TIGR00773 58 DGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPA-----LIYLAFNANDPITREGW---------AIPA 123 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHH-----HHHhheecCCCcccCcc---------cccc
Confidence 344555667888888765432 22221 2233566666663 334432110 11233 5667
Q ss_pred CccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 258 AVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFA 335 (523)
Q Consensus 258 aTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G 335 (523)
+||-+-++.++.=+ ++|..++..+..-++.||..++++-.++.+- + .+.... ...+.+
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~---~-i~~~~L----------------~~a~~~ 183 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYTN---D-LSMAAL----------------LVAAVA 183 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecCC---C-CCHHHH----------------HHHHHH
Confidence 89998888887644 7899999999999999999999876665431 1 111110 011112
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh---------------------------------hhHHH
Q psy5406 336 LISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR---------------------------------TYSKT 382 (523)
Q Consensus 336 ~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi---------------------------------~l~~~ 382 (523)
....+++++.+.++. ...+. ...+.++.....|.+.. .+.-+
T Consensus 184 ~~~l~~~~~~~v~~~---~~y~~--lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilP 258 (373)
T TIGR00773 184 IAVLAVLNRCGVRRL---GPYML--VGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILP 258 (373)
T ss_pred HHHHHHHHHcCCchh---hHHHH--HHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 233344455443221 11111 12222222244555444 13335
Q ss_pred HH-HHHHhhhhhcccc-c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cCCCcchhhhhhccCchhHHHHHh
Q psy5406 383 LV-FLITGLAIFSFRH-R-VEPALVIWSLILCLVGRACNIFPLAILVNRFRE----HQITRRMMFIMWFSGLRGAISYAL 455 (523)
Q Consensus 383 ~~-Fv~lG~~~~~~~~-~-~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~~GlRG~valaL 455 (523)
++ |...|..++.... . .++ ......+..+++|+++++..+|+..+++. .+.+|++..-. |+-+.+.+.+
T Consensus 259 lFAFanAGv~l~~~~~~~~~~~-v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv---~~L~GIGFTm 334 (373)
T TIGR00773 259 LFAFANAGVSLQGVSLNGLTSM-LPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAV---GVLCGIGFTM 334 (373)
T ss_pred HHHHHhcCeeeecCcchhhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH---HHHHHHHHHH
Confidence 56 7888988853221 1 122 23445566789999999999999877643 44566555443 3556666666
Q ss_pred Hh
Q psy5406 456 SL 457 (523)
Q Consensus 456 al 457 (523)
++
T Consensus 335 Sl 336 (373)
T TIGR00773 335 SI 336 (373)
T ss_pred HH
Confidence 65
No 24
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=95.44 E-value=0.0087 Score=65.87 Aligned_cols=50 Identities=16% Similarity=0.434 Sum_probs=46.5
Q ss_pred CcchhhHHhhhhcccc-CCChHHHHHHHHHHHHHHhhhhhhhhhhcccccc
Q psy5406 1 MAILFNGIVMSHYTHY-NLSTVTQITMQQTMRTLSFIAETCVFAYLGKNIS 50 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~~-n~s~~~~~~~~~~~~~~~~~~e~~if~~lg~~~~ 50 (523)
+|+++||++++||... |.++++|...+.+.++++++.|+++|+++|+.+-
T Consensus 234 lAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~ 284 (525)
T TIGR00831 234 IAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTP 284 (525)
T ss_pred HHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988 9999999999999999999999999999998764
No 25
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=95.40 E-value=2.2 Score=43.33 Aligned_cols=141 Identities=14% Similarity=0.146 Sum_probs=85.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHh--HHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHH
Q psy5406 144 QYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAF--FLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGT 221 (523)
Q Consensus 144 ~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~--~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~ 221 (523)
.|+|. +++++=+++|.+.+-+-++-+ ++ ...|....+ ..-.+...+|..|-++|.|+..+..+....+...=+
T Consensus 8 ~kiPG--G~mvVPLllgalinTf~P~~l-~~--iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~ 82 (314)
T PF03812_consen 8 EKIPG--GMMVVPLLLGALINTFFPNAL-EI--IGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKF 82 (314)
T ss_pred ccCCC--ceeHHHHHHHHHHHhcCCChh-hc--cCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHH
Confidence 45774 455566677766553322111 10 011222111 123456679999999999999998888777777777
Q ss_pred HHHHHHHHHHHHHHhhccc----ccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHH
Q psy5406 222 TISAFVIGAGVYILGLADV----AYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIV 294 (523)
Q Consensus 222 ~i~~~~v~~~~~~l~~~~~----~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aiv 294 (523)
++.+.+.-...+++|..++ .+|+ .++.+=+.++.+.+..-.++.+|+|-+++... .+-..+||+=.+.
T Consensus 83 ~~~~~lgl~~~~~fg~~Gi~~g~f~Gl---S~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA--~~i~sl~~GPf~t 154 (314)
T PF03812_consen 83 IIGALLGLLVGKFFGPEGIQSGFFLGL---SALAIIAAMTNSNGGLYLALMGQYGDEEDVGA--FSILSLNDGPFFT 154 (314)
T ss_pred HHHHHHHHHHHHHcCccccccccccch---HHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH--HHHHHhhhhHHHH
Confidence 6664444344455554332 2344 34555578889999999999999987666544 3344566764443
No 26
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.09 E-value=0.62 Score=52.26 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=56.2
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHH
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPV 262 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv 262 (523)
+.|..+++|+.....|+++|.+.+.++++.++.+.+..++.-.+.+.....+ +++++.+++.+|..+++....
T Consensus 264 ~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~-------~g~~~~~al~~g~~L~~~Gef 336 (601)
T PRK03659 264 EPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL-------YGLRSSERMQFAGVLSQGGEF 336 (601)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhccccH
Confidence 3467888999999999999999999988876665555555555554444444 589999999999998887754
Q ss_pred H
Q psy5406 263 A 263 (523)
Q Consensus 263 ~ 263 (523)
.
T Consensus 337 ~ 337 (601)
T PRK03659 337 A 337 (601)
T ss_pred H
Confidence 4
No 27
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.02 E-value=4.9 Score=41.26 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=78.0
Q ss_pred cChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCc
Q psy5406 180 FSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAV 259 (523)
Q Consensus 180 ~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaT 259 (523)
.++|....+.+..+.|..|++++.+++++..+..-.... +...++++.-+..+.+... .+....+.+..|-++.+.
T Consensus 27 ~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll~~~~~~l---~~~~~~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 27 IKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLLGFGLSRL---FPAFLPPELALGLLILAC 102 (313)
T ss_pred cchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHhh
Confidence 445566777788899999999999999887664322111 1223333333322222100 111122335555444443
Q ss_pred cHHH---HHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 260 DPVA---TVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFAL 336 (523)
Q Consensus 260 DPv~---v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~ 336 (523)
=|.+ .+..-+.-|-+..... .++.++...++++.=..+.+..+..+...+....+.++...++.-.++|-+.-.
T Consensus 103 lPtTv~S~v~~T~~AgGN~a~Al---~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~vllP~~~Gq~~r~ 179 (313)
T PF13593_consen 103 LPTTVSSSVVLTRLAGGNVALAL---FNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTVLLPLVLGQLLRR 179 (313)
T ss_pred CCchhhHHHHHHHHcCCCHHHHH---HHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 2233333343333322 345555566666555444433211122233445566666666666666666555
Q ss_pred HHHHHHHH
Q psy5406 337 ISALLLKY 344 (523)
Q Consensus 337 ~~~~ll~~ 344 (523)
....+.++
T Consensus 180 ~~~~~~~~ 187 (313)
T PF13593_consen 180 WVPKWVAR 187 (313)
T ss_pred HHHHHHHH
Confidence 44444333
No 28
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=95.02 E-value=2.2 Score=44.69 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=66.6
Q ss_pred HhHHHhhHHHHHHhhhcCCcHhHHHh----HHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc---cccCCCHHHHHHHhc
Q psy5406 184 AFFLVLLPPIIFESGYNLHKGNFFQN----IGS--ILVFAIIGTTISAFVIGAGVYILGLAD---VAYKLSFVESFAFGS 254 (523)
Q Consensus 184 ~~~~i~Lp~IlF~~G~~l~~~~~~~~----~~~--il~la~~g~~i~~~~v~~~~~~l~~~~---~~~~l~~~~alllGa 254 (523)
..-+....+--|..|+|++++-..-. .+. -+.-|+.|++.++. +|..-+.+ ..-|| +
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GW---------g 127 (389)
T PRK09560 62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGW---------A 127 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCcc---------c
Confidence 34445566677888998886543321 111 22345666666643 34331110 01233 5
Q ss_pred cccCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 255 LISAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 255 ilsaTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
+=.+||-+-++.++.=+ ++|..++..+..=++.||..++++-.++.
T Consensus 128 IPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY 175 (389)
T PRK09560 128 IPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY 175 (389)
T ss_pred cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec
Confidence 66789999888887744 78999999999999999999998766654
No 29
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.85 E-value=0.73 Score=51.89 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=63.3
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHH
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPV 262 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv 262 (523)
+.|..+++|+.....|+++|...+.++++.++.+.+..++.-.+.+....++ +++++.+++.+|..++.-...
T Consensus 267 ~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-------~g~~~~~a~~~gl~L~~~Gef 339 (621)
T PRK03562 267 EPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-------LGVPRKQRRWFAVLLGQGGEF 339 (621)
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHhHHHHHHHHHhccccH
Confidence 3467788888888999999999998888776665555555554555444444 589999999999999876654
Q ss_pred H--HHHHHhhCCC-ChhHHHHHh
Q psy5406 263 A--TVAIFHALDV-DPVLNMLVF 282 (523)
Q Consensus 263 ~--v~~il~~~~~-~~~l~~ll~ 282 (523)
. +..+..+.++ +++.+..+.
T Consensus 340 ~~vl~~~a~~~~~i~~~~~~~lv 362 (621)
T PRK03562 340 AFVVFGAAQMANVLEPEWAKLLT 362 (621)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH
Confidence 3 2333334443 555555444
No 30
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.68 E-value=0.3 Score=46.13 Aligned_cols=145 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred hhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHH
Q psy5406 189 LLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIF 268 (523)
Q Consensus 189 ~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il 268 (523)
.+..++|..|.+++.+++++..+..-. -..+.+..+++.-+..|.++. .-++....+..|.++.+..|....+..
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~-l~~~l~~~~~i~Plla~~l~~----~~~~~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKL-LLIGLLAQFLIMPLLAFGLAW----LLLPLSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHH-----HHTT--HHHHHHHHHHHHS-B-THHHH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHH----HHhcCCHHHHHHHHHHhcCCcHHHHHH
Confidence 456789999999999999988775333 223445555555555554420 114444556666666655555555543
Q ss_pred hhC--CCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 269 HAL--DVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLK 343 (523)
Q Consensus 269 ~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~ 343 (523)
-.. |-+..+... -..+|...+.+..=....+..+... ..+ .............-+++=.+.|...++..+
T Consensus 78 ~t~l~~Gd~~ls~~---lt~istll~~~~~P~~~~l~~~~~~-~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p 149 (187)
T PF01758_consen 78 FTYLAGGDVALSVS---LTLISTLLAPFLMPLLLYLLSGGSV-DVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP 149 (187)
T ss_dssp HHHHTT--HHHHHH---HHHHHHHHHHHHHHHHHHHHH-GGG-HHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred HHHHhCCCcccccc---eeeHHHHHHHHHHHHHHHHHhcccc-CCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence 332 334444433 3445555555544433333322111 112 111222233344445555556666666655
No 31
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=94.67 E-value=3.1 Score=43.58 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=66.0
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHH----hHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc---cccCCCHHHHHHHhcc
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQ----NIGS--ILVFAIIGTTISAFVIGAGVYILGLAD---VAYKLSFVESFAFGSL 255 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~----~~~~--il~la~~g~~i~~~~v~~~~~~l~~~~---~~~~l~~~~alllGai 255 (523)
.-+....+--|..|+|++++-..- ..+. -..-|+.|++.++ .+|...+.+ ..-|| ++
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPA-----liy~~~n~~~~~~~~GW---------aI 128 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPA-----LIYLLFNYADPVTREGW---------AI 128 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHH-----HHHhheecCCCcccCcc---------cc
Confidence 334555667788899888654422 1221 2233566666664 334332111 01233 56
Q ss_pred ccCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 256 ISAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 256 lsaTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
=.+||-+-++.++.=+ ++|..++..+..-++.||..++++-.++.
T Consensus 129 P~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY 175 (388)
T PRK09561 129 PAATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY 175 (388)
T ss_pred ccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec
Confidence 6789999888887643 78999999999999999999998766654
No 32
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=93.89 E-value=3.3 Score=42.17 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred HHHHhhhcCCcHhHHHh---HHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHH
Q psy5406 193 IIFESGYNLHKGNFFQN---IGSI---LVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVA 266 (523)
Q Consensus 193 IlF~~G~~l~~~~~~~~---~~~i---l~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~ 266 (523)
--+..|+|++++.+.-. ++.. ..-|..|++.++ .+|+.- +.+-+...===++-++||-+-++.
T Consensus 74 FFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PA-----liy~~~------n~~~p~~~~GWaIP~ATDiAFAlG 142 (390)
T COG3004 74 FFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPA-----LIYLAL------NAGDPATLEGWAIPMATDIAFALG 142 (390)
T ss_pred HHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhh-----hHhhee------ecCChhhhcCcCcccHHHHHHHHH
Confidence 34667888887765433 3322 223445555553 334431 111111111116788999999988
Q ss_pred HHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHHh
Q psy5406 267 IFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSILG 301 (523)
Q Consensus 267 il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~ 301 (523)
++.-+ ++|..++.-+..-+++||.-++++-.++.+
T Consensus 143 vlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt 179 (390)
T COG3004 143 VLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT 179 (390)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc
Confidence 87754 789999999999999999999988777654
No 33
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=93.40 E-value=7.4 Score=41.37 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=65.4
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHHh---HHH---HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHh-cccc
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQN---IGS---ILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFG-SLIS 257 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~~---~~~---il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllG-ails 257 (523)
.-+.+..+--|..|+|++++-..-. .++ -..-|+.|++.++ .+|+..+. +-+ . .=| ++-.
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPA-----lIy~~~n~----~~~--~--~~GWgIPm 133 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPA-----ALYTALNA----GGP--G--ASGWGVPM 133 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHH-----HHHheeec----CCC--c--cCcccccc
Confidence 4445566677888998886544221 111 2233566666663 33443111 111 0 112 6778
Q ss_pred CccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 258 AVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 258 aTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
+||-+-++.++.=+ ++|..++..+..-++.||..++++-.++.
T Consensus 134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY 178 (423)
T PRK14855 134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY 178 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec
Confidence 89999888887754 78999999999999999999987654443
No 34
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.96 E-value=9 Score=39.21 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHH
Q psy5406 143 FQYLPESIAIVFLGALIGM-IINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGT 221 (523)
Q Consensus 143 ~~~lP~~~~~ll~GillG~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~ 221 (523)
.+.++.....+++|++++. .... + ..+.+-.++..+ .+|..=+-.-|.+++..++.+..+..+...+..+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~---~--~~~~~Gi~~~~k----~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGL---P--ARFKPGIKFSSK----KLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCC---c--HHHHhHHHHHHH----HHHHHHHHHHCccccHHHHHHhCccHHHHHHHHH
Confidence 3668999999999999994 3221 1 111121222223 3444445556899999999999998777777766
Q ss_pred HHHHHHHHHHH-HHHhhcccccCCCHHHHHHHhc---cccCccHHHHHHHHhh
Q psy5406 222 TISAFVIGAGV-YILGLADVAYKLSFVESFAFGS---LISAVDPVATVAIFHA 270 (523)
Q Consensus 222 ~i~~~~v~~~~-~~l~~~~~~~~l~~~~alllGa---ilsaTDPv~v~~il~~ 270 (523)
..+.....+.. .+ ++++...+.++|+ |+.++.-+++.++.|.
T Consensus 94 ~~~~~~~~~lg~r~-------~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 94 ILTFLLTYWLGRRL-------FGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHHHHHHHHHHH-------hCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 66654444333 33 5899999999984 4444545555555543
No 35
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=92.85 E-value=13 Score=38.20 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=82.6
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHH
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVAT 264 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v 264 (523)
...+++..|+|.-|++++.+++++..+.-... ..+.+.++.+.-+..+.++ .-.+...-+..|-++..+-|..+
T Consensus 39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~-----~~~~l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLA-----KLFPLPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHH-----HHcCCCHHHHHhHHheeeCCCch
Confidence 45788899999999999999999876643322 2345555555555555543 22345667777777777777766
Q ss_pred HHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 265 VAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKY 344 (523)
Q Consensus 265 ~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~ 344 (523)
.+..--.-.+.++.--+. ++..+..++..+.=....+..++.. ..+..+.+.+.+.+.+.-+++|.++=.....+.++
T Consensus 113 ~S~~~t~lAkGnValsV~-~tsvStll~~f~tPllv~l~~~~~v-~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~ 190 (319)
T COG0385 113 ASNAMTYLAKGNVALSVC-STSVSTLLGPFLTPLLVGLLAGGGV-PVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVER 190 (319)
T ss_pred hHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664333222222222211 2222333444433333332221111 11234455666666666777776665555544443
Q ss_pred h
Q psy5406 345 V 345 (523)
Q Consensus 345 ~ 345 (523)
.
T Consensus 191 ~ 191 (319)
T COG0385 191 L 191 (319)
T ss_pred H
Confidence 3
No 36
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=92.81 E-value=6.5 Score=41.15 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=63.0
Q ss_pred HhhHHHHHHhhhcCCcHhH----HHhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHh-ccccCcc
Q psy5406 188 VLLPPIIFESGYNLHKGNF----FQNIGS--ILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFG-SLISAVD 260 (523)
Q Consensus 188 i~Lp~IlF~~G~~l~~~~~----~~~~~~--il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllG-ailsaTD 260 (523)
....+--|..|+|++++-. ++..+. -..-|+.|++.++ .+|..-+ .+ ....=| ++=.+||
T Consensus 63 gLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPA-----lIy~~~n------~~--~~~~~GW~IP~ATD 129 (383)
T PRK14854 63 GLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPS-----LIYLSIN------HD--IKVINGWAIPSATD 129 (383)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHH-----HHHHhhc------cC--CcccCccccccHHH
Confidence 3444566778888776533 222221 2234566666664 3343311 11 111111 5677899
Q ss_pred HHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 261 PVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 261 Pv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
-+-++.++.=+ ++|..++..+..-++.||..++++-.++.
T Consensus 130 IAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY 171 (383)
T PRK14854 130 IAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY 171 (383)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec
Confidence 99888887644 78999999999999999999998766654
No 37
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=92.81 E-value=5.8 Score=41.70 Aligned_cols=107 Identities=11% Similarity=0.145 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
.+.++.+.+.++..+..++.+.. ..+|.-+..++.|+++-.+.......+ .+... -+.+..+.|-+.+..+=.
T Consensus 222 ~l~~i~i~~~~G~~i~~~l~~~~-~~lP~f~~ami~g~ivrn~~~~~~~~~----id~~~--i~~I~~~sL~~fl~~alm 294 (368)
T PF03616_consen 222 HLALILIAIGLGYIISALLKKIG-LTLPLFVGAMIVGIIVRNILDKTGKYK----IDRKT--IDRISGISLDLFLAMALM 294 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-cCCchHHHHHHHHHHHHHHHHHhCccc----CCHHH--HHHHHHHHHHHHHHHHHH
Confidence 45556667777878888877644 579998888888888876554221111 11111 256777888888888889
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVY 233 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~ 233 (523)
++|...+.++..+++.+-+.+++++.+..-+..+
T Consensus 295 sl~l~~l~~~a~Plliil~~q~i~~~~f~~fv~f 328 (368)
T PF03616_consen 295 SLKLWVLADYALPLLIILAVQTILMVLFAYFVTF 328 (368)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998888888887665544443
No 38
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=92.56 E-value=6.2 Score=42.12 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=65.5
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHH----HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcc--cccCCCHHHHHHHhccc
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFF----QNIGS--ILVFAIIGTTISAFVIGAGVYILGLAD--VAYKLSFVESFAFGSLI 256 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~----~~~~~--il~la~~g~~i~~~~v~~~~~~l~~~~--~~~~l~~~~alllGail 256 (523)
.-+.+..+--|..|+|++++-.. +-.+. -..-|+.|++.++ .+|+.-+.+ ..-|| ++-
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPA-----lIY~~~n~~~~~~~GW---------gIP 137 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPG-----LIYFFLNADTPSQHGF---------GIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHH-----HHHhheecCCCccCcc---------ccc
Confidence 33455566678888888765432 22221 2233566666663 344432111 01122 677
Q ss_pred cCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 257 SAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 257 saTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
.+||-+-++.++.=+ ++|..++..+..=++.||..++++-.++.
T Consensus 138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY 183 (438)
T PRK14856 138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY 183 (438)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec
Confidence 889999888887643 78999999999999999999998766654
No 39
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.39 E-value=4.2 Score=45.22 Aligned_cols=73 Identities=10% Similarity=-0.029 Sum_probs=49.7
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHH
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVAT 264 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v 264 (523)
+..+++|+.....|+++|...+.+++..++.+.....+.-.+.+.....+ ++.++.+++..|..+++......
T Consensus 277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~~-------~g~~~~~a~~~gl~l~~~Gef~l 349 (558)
T PRK10669 277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVRL-------FGHSRRTALTIAASLAQIGEFAF 349 (558)
T ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhhHHHHHHHHhcccchHH
Confidence 55778888888999999999988876555443333333333333333333 57899999999999887665443
No 40
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.37 E-value=8.7 Score=35.15 Aligned_cols=128 Identities=13% Similarity=0.073 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhH
Q psy5406 127 VLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNF 206 (523)
Q Consensus 127 ~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~ 206 (523)
.+.++...+.+.++.| +|. .+++..++.+.+.+.....+ .. -|+.+.......+-...|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~---~Pa--~~llG~mi~~~~~~~~~~~~-------~~-~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLG---LPA--AWLLGPLLAGAVLSLAGGLE-------IT-LPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHC---CCc--HHHHHHHHHHHHHHhcCCcc-------CC-CCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 3455666666777765 554 23444445444443322111 11 25678888888999999999998777
Q ss_pred HHhHHHHH--HHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChh
Q psy5406 207 FQNIGSIL--VFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPV 276 (523)
Q Consensus 207 ~~~~~~il--~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~ 276 (523)
++..+... ......++..++..+..++.+ .++++.++++ |..=..-+ ....+-+|+|.|.+
T Consensus 70 ~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~------~~~~~~ta~L-a~~PGGl~--~m~~~A~~~gad~~ 132 (156)
T TIGR03082 70 AELKRLWPAALLSTVLLLALSALLAWLLARL------TGVDPLTAFL-ATSPGGAS--EMAALAAELGADVA 132 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHH-HhCCchHH--HHHHHHHHhCCCHH
Confidence 66544322 223334444445555555554 5899988864 43322222 23333345565544
No 41
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=92.12 E-value=3.4 Score=39.22 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccC------hhHhHHHhhHHH
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFS------PTAFFLVLLPPI 193 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~------~~~~~~i~Lp~I 193 (523)
.+..+.+++.++.++++.+.|- |+|.+...++.|.++.+..+.....+ ....|...|. -..+.+ +-
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~G---r~hgSAIAI~lGL~lAy~gG~~TgG~-kGlaDi~lfsGiglmGGaMlRD----fA 88 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKG---KLHGSAIAITMGLVLAYVGGVYTGGE-KGLADIAIFGGFGLMGGAMLRD----LA 88 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CcchhHHHHHHHHHHHHHcccccCCc-cccchhhhhcchhhhhhHHHHH----HH
Confidence 3445666677777776666554 48999999999999998755433211 1111111111 111122 24
Q ss_pred HHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------cC-CCHHHHHHHhccccCccHHHHHH
Q psy5406 194 IFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVA------YK-LSFVESFAFGSLISAVDPVATVA 266 (523)
Q Consensus 194 lF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~------~~-l~~~~alllGailsaTDPv~v~~ 266 (523)
+-..+++.|.++.||....-..--+.|+++++.+-....|.+|..+-. -| .+....=.=|+.+.+++.+..++
T Consensus 89 IvaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~DavS~tTIGAGAvTyIVGPVTGaAiGAsS~ViALS 168 (254)
T TIGR00808 89 IVATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRDAVSMTTIGAGAVTYIVGPVTGAAVGASSEVIALS 168 (254)
T ss_pred HHHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhheeeccceEEEEecCccchhccCCcchHHHH
Confidence 567899999999999999888888899999987777777776421100 00 00111123467788888888888
Q ss_pred HHh
Q psy5406 267 IFH 269 (523)
Q Consensus 267 il~ 269 (523)
+-.
T Consensus 169 IA~ 171 (254)
T TIGR00808 169 IAI 171 (254)
T ss_pred HHH
Confidence 744
No 42
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.92 E-value=1.1 Score=49.71 Aligned_cols=134 Identities=19% Similarity=0.191 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhc
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYN 200 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~ 200 (523)
++.+.+.+.++.+++++- .|-.++-.+.+.+++|+++|.... .+ |+.+-++++.+-+|..|++
T Consensus 12 ~l~lfl~i~lG~~lG~ik--i~~~~LG~~~gvLfvgl~~G~~g~--------------~i-~~~v~~~gl~lFvy~vG~~ 74 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIK--FGSFQLGGVAGSLIVAVLIGQLGI--------------QI-DPGVKAVFFALFIFAIGYE 74 (562)
T ss_pred HHHHHHHHHHhHhhcceE--EeeeecchHHHHHHHHHHHHhcCC--------------CC-ChHHHHHHHHHHHHHhhhc
Confidence 344445566666666542 222456767899999999995310 12 3347778899999999999
Q ss_pred CCcHhH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChh
Q psy5406 201 LHKGNF---FQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPV 276 (523)
Q Consensus 201 l~~~~~---~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~ 276 (523)
.-.+-| ||..+....+++.-++...+++-...++++ ++.+....++=||.-++..-.++...+.+.+.++.
T Consensus 75 ~Gp~Ff~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g-----~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~~~~~ 148 (562)
T TIGR03802 75 VGPQFFASLKKDGLREIILALVFAVSGLITVYALAKIFG-----LDKGTAAGLAAGGLTQSAVIGTAGDAIEKLGLSPE 148 (562)
T ss_pred cCHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCHHHHHHHHhchhhccHHHHHHHHHHHhcCCCcc
Confidence 996544 444445556665555554444333344432 34455556666666554444455555565665543
No 43
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=91.70 E-value=4.7 Score=41.47 Aligned_cols=108 Identities=9% Similarity=0.042 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcH
Q psy5406 125 LCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKG 204 (523)
Q Consensus 125 ~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~ 204 (523)
.+++..+.....+.+|.| +|.. .++..++.+...+.....+ ..+ |+.+.......+-...|.+++.+
T Consensus 158 ~~l~~~~~~g~~l~~~l~---iPa~--~llGpml~~a~~~~~~~~~-------~~~-P~~l~~~aqv~iG~~iG~~f~~~ 224 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLR---IPAP--WLLGPMLVSAILNLFGGPS-------FSL-PPWLVNAAQVLIGASIGSRFTRE 224 (318)
T ss_pred HHHHHHHHHHHHHHHHhC---CCcH--HHHHHHHHHHHHHHHhCCC-------CCC-CHHHHHHHHHHHHHHHHccccHH
Confidence 445555666667777766 5533 3334444444443322211 122 66788888889999999999988
Q ss_pred hHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH
Q psy5406 205 NFFQNIGSILV--FAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFA 251 (523)
Q Consensus 205 ~~~~~~~~il~--la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~all 251 (523)
.+|+..+.... ......+..++..+..++.+ .++++.++++
T Consensus 225 ~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~------~~~~~~t~~L 267 (318)
T PF05145_consen 225 TLRELRRLLPPALLSTLLLLALCALFAWLLSRL------TGIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HCCCHHHHHH
Confidence 87776553322 22333334445555555554 5889988876
No 44
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=91.17 E-value=0.56 Score=48.93 Aligned_cols=107 Identities=18% Similarity=0.200 Sum_probs=66.0
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHH----HhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHh-cc
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFF----QNIGS--ILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFG-SL 255 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~----~~~~~--il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllG-ai 255 (523)
+.+-+....+--|..|+|++++-.. +..+. -..-|+.|++.++ .+|... +..-.+ ..=| ++
T Consensus 57 ~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPa-----lIyl~~------n~~~~~-~~~GW~I 124 (378)
T PF06965_consen 57 HWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPA-----LIYLAF------NAGGPE-AAHGWAI 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTH-----HHHGGG--------SSTT-HHHHTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHH-----HHHhee------ecCCCC-cCceEEe
Confidence 4455566677788899988865432 22221 2233555666653 344431 221111 1112 77
Q ss_pred ccCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHHh
Q psy5406 256 ISAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSILG 301 (523)
Q Consensus 256 lsaTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~ 301 (523)
-.+||-+-++.++.-+ ++|..++..+..-++.||..++++-.++.+
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt 172 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT 172 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC
Confidence 8899999999998754 789999999999999999999998877763
No 45
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=91.01 E-value=2.7 Score=49.07 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=56.1
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHH
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQN--IGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPV 262 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~~--~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv 262 (523)
...+++|+-....|+++|.+.+... +..++.+.+.+.+.-.+...+..++ +++|+.+++.+|.++++-.-+
T Consensus 323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~-------~g~~~~eal~lG~lm~~kG~~ 395 (832)
T PLN03159 323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFF-------YTMPFREGITLGFLMNTKGLV 395 (832)
T ss_pred HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHHHHHHhcccHH
Confidence 3568889999999999999887543 2222222222222222222222232 689999999999999987744
Q ss_pred H--HHHHHhhCCC-ChhHHHHHhhhhhc
Q psy5406 263 A--TVAIFHALDV-DPVLNMLVFGESIL 287 (523)
Q Consensus 263 ~--v~~il~~~~~-~~~l~~ll~gES~l 287 (523)
. +..+-.+.++ +++.+..+..-+++
T Consensus 396 ~Lii~~ig~~~gvi~~~~f~~lVl~avl 423 (832)
T PLN03159 396 EMIVLNVGRDQEVLDDESFAVMVLVAVA 423 (832)
T ss_pred HHHHHHHHHhcCccCchhhhHHHHHHHH
Confidence 4 2333334432 45555544444433
No 46
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=90.27 E-value=1.3 Score=42.09 Aligned_cols=129 Identities=19% Similarity=0.261 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCc-----HhHHHhHHHHHHHHHHHHHHHH
Q psy5406 151 AIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHK-----GNFFQNIGSILVFAIIGTTISA 225 (523)
Q Consensus 151 ~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~-----~~~~~~~~~il~la~~g~~i~~ 225 (523)
+.+++|+++|..... + + .. .+...++.|..++|..|.++.. |++|+..++.+.+.+... +..
T Consensus 3 ~~li~Gi~lG~~~~~----~---~----~~-~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tI-lGS 69 (191)
T PF03956_consen 3 IALILGILLGYFLRP----P---F----SL-IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATI-LGS 69 (191)
T ss_pred eeHHHHHHHHHHhcc----c---c----cc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHH-HHH
Confidence 457788888865431 1 1 11 1356777888999999998853 355655667777666444 334
Q ss_pred HHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHh
Q psy5406 226 FVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILG 301 (523)
Q Consensus 226 ~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~ 301 (523)
++.+.....+ +++|+.+++..|+=..==+-.. .++.++ ..+.++++-+-.-++=+.+++++.-.+..
T Consensus 70 llgg~l~~~l------l~~~~~~~lav~sG~GwYSlsg--~~i~~~-~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 70 LLGGLLASLL------LGLSLKESLAVASGFGWYSLSG--VLITQL-YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred HHHHHHHHHH------hcCCHHHHHHHHccCcHHHhHH--HHHHhh-hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554 5899999988886443211111 112222 22345554444444444556665555555
No 47
>COG2855 Predicted membrane protein [Function unknown]
Probab=90.23 E-value=24 Score=36.31 Aligned_cols=160 Identities=19% Similarity=0.246 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCC
Q psy5406 123 FVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLH 202 (523)
Q Consensus 123 ~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~ 202 (523)
+-.++-..+..+++.....+ ..+|..+..++.||++|..... -..+..-.+|....+..+ =+-.-|++++
T Consensus 15 l~~~ia~~a~~l~~~~~~~~-~~l~al~lAIllGi~l~~l~~~-----~~~~~~GI~fs~k~LLr~----gIvLlG~~lt 84 (334)
T COG2855 15 LSALIAGLAMLLGAFFFSIH-LGLSALTLAILLGILLGILPQI-----PAQTSAGITFSSKKLLRL----GIVLLGFRLT 84 (334)
T ss_pred HHHHHHHHHHHHhchHHhhh-cCchHHHHHHHHHHHHhccccc-----hhhhccchhhhHHHHHHH----HHHHHcceee
Confidence 33444444555555554443 3488999999999999943221 112222234444444444 3444589999
Q ss_pred cHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhc---cccCccHHHHHHHHhhCCCChhHHH
Q psy5406 203 KGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGS---LISAVDPVATVAIFHALDVDPVLNM 279 (523)
Q Consensus 203 ~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGa---ilsaTDPv~v~~il~~~~~~~~l~~ 279 (523)
+.++.+...+.+......+..+ ++.++ ++|. .+++++..+++.|+ |+.+..-+++-++.+. -+++...
T Consensus 85 l~~i~~~G~~~v~~~~~~l~~t-~~~~~---~lg~---~lgld~~~a~Lia~GssICGasAiaA~~pvika--~~~eva~ 155 (334)
T COG2855 85 LSDIADVGGSGVLIIAITLSST-FLFAY---FLGK---LLGLDKKLALLIAAGSSICGASAIAATAPVIKA--EEEEVAV 155 (334)
T ss_pred HHHHHHcCccHHHHHHHHHHHH-HHHHH---HHHH---HhCCCHHHHHHHHccchhhHHHHHHHhCCcCCC--Cccccce
Confidence 9999998887666554433333 33332 2221 36899999999995 4444444444444442 2344444
Q ss_pred HHhhhhhccchhHHHHHHHHHhc
Q psy5406 280 LVFGESILNDAIAIVLTTSILGS 302 (523)
Q Consensus 280 ll~gES~lND~~aivlf~~~~~~ 302 (523)
-+-.-.+++- +++.+|-.+..+
T Consensus 156 aIa~V~lfgt-ia~llyP~l~~~ 177 (334)
T COG2855 156 AIAVVVLFGT-LAMLLYPLLYPL 177 (334)
T ss_pred ehhhHHHHHH-HHHHHHHHHHHH
Confidence 4444444443 344444444443
No 48
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=89.93 E-value=28 Score=36.59 Aligned_cols=119 Identities=16% Similarity=0.250 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccC---hhHhHHHhhHHHHHH
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFS---PTAFFLVLLPPIIFE 196 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~---~~~~~~i~Lp~IlF~ 196 (523)
++....++++++-.+.+-++-.+.+.+||++.-=+..+++++..+-... |. ..+| ++.|.. ..--.
T Consensus 10 tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~-----~~--~~fd~~l~~~fml----iFFtt 78 (404)
T COG0786 10 TLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGG-----VS--LNFDTSLQDVFML----IFFAT 78 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcce-----EE--EeCCcccccHHHH----HHHHH
Confidence 4444555555665544433222236799998765666666665442211 11 1122 233332 23345
Q ss_pred hhhcCCcHhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccCCCHHHHHHHhcc
Q psy5406 197 SGYNLHKGNFFQNIGSILVFAIIGTTISAF--VIGAGVYILGLADVAYKLSFVESFAFGSL 255 (523)
Q Consensus 197 ~G~~l~~~~~~~~~~~il~la~~g~~i~~~--~v~~~~~~l~~~~~~~~l~~~~alllGai 255 (523)
.|++-+.+.+||-++....+......+... .++.....+ .+.+...+++-|++
T Consensus 79 iglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~------lgidpl~gllagsI 133 (404)
T COG0786 79 IGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKL------LGLDPLIGLLAGSI 133 (404)
T ss_pred hccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHH------cCccHHHHHHhcce
Confidence 689999999999999877766555444322 223322222 45666666666654
No 49
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=89.90 E-value=7.1 Score=41.50 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=56.3
Q ss_pred hHhHH-HhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccH
Q psy5406 183 TAFFL-VLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDP 261 (523)
Q Consensus 183 ~~~~~-i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDP 261 (523)
+.+.+ +++|+--...|+++|.+.+.+++..++.+.......-........+. .|++...+...|...++--.
T Consensus 271 ~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~-------~g~~~~~~~~~g~~~~~~ge 343 (397)
T COG0475 271 EPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARL-------LGFSKRLALGIGLLLRQGGE 343 (397)
T ss_pred HhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-------HcCcHHHHHHHHhhhhhhhH
Confidence 56788 89999999999999999999999986666666665555555555554 36888888888877776544
Q ss_pred HHH
Q psy5406 262 VAT 264 (523)
Q Consensus 262 v~v 264 (523)
.+.
T Consensus 344 ~~~ 346 (397)
T COG0475 344 FAF 346 (397)
T ss_pred HHH
Confidence 443
No 50
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=89.80 E-value=25 Score=35.88 Aligned_cols=142 Identities=16% Similarity=0.140 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHH---HhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHH
Q psy5406 144 QYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFL---VLLPPIIFESGYNLHKGNFFQNIGSILVFAIIG 220 (523)
Q Consensus 144 ~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~---i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g 220 (523)
.|+|. +++++=+++|.+.+-+-+ +.. +...|.+..|-+ -.+...+|..|-++|.|.-.+..+....+...=
T Consensus 8 ~kiPg--g~m~vPl~lga~inTf~P-~~l---~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K 81 (312)
T PRK12460 8 KKIPG--GMMVVPLLIGALINTFFP-QAL---EIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITK 81 (312)
T ss_pred ccCCC--ceeHHHHHHHHHHHhccC-cch---hhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHH
Confidence 35775 344444556654442221 111 122344444422 235567899999999998877777666655555
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHH
Q psy5406 221 TTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTT 297 (523)
Q Consensus 221 ~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~ 297 (523)
+.+.+.+.-...+++|..+ .+|++ .+.+=+.++-+....-.++..|+|-+++... ..-..+||+=-+.+..
T Consensus 82 ~~~~~~~g~~~~~~~g~~g-~~Gls---~laiiaa~~~~Ng~ly~al~~~yG~~~d~gA--~~~~sl~~GPf~tm~a 152 (312)
T PRK12460 82 LGVAIVIGLLVGKFFGAEG-IFGLS---GLAIVAAMSNSNGGLYAALMGEFGDERDVGA--ISILSLNDGPFFTMLA 152 (312)
T ss_pred HHHHHHHHHHHHHHcCccc-ccchH---HHHHHHHHhcCcHHHHHHHHHHcCCHhhhhH--HhhhhhccCcHHHHHH
Confidence 5555333333345554322 23443 3444467788899999999999987766554 2344577764444333
No 51
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=89.74 E-value=27 Score=36.09 Aligned_cols=101 Identities=9% Similarity=0.080 Sum_probs=56.5
Q ss_pred HhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHH
Q psy5406 188 VLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAI 267 (523)
Q Consensus 188 i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~i 267 (523)
+++.+++|..|.+++.++++|..++--. -..+.+..+.+.-+..|.++.. .++.+ ..+..|-++.+.-|..+.+.
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l--~~~~~--p~l~~GliLv~~~Pgg~~S~ 121 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWL--FLRDL--FEYIAGLILLGLARCIAMVF 121 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHH--HcCCC--HHHHHHHHHHHhcchHHHHH
Confidence 3455789999999999999997775332 2235555555555555544311 12333 34666666666666555554
Q ss_pred HhhC--CCChhHHHHHhhhhhccchhHHHHH
Q psy5406 268 FHAL--DVDPVLNMLVFGESILNDAIAIVLT 296 (523)
Q Consensus 268 l~~~--~~~~~l~~ll~gES~lND~~aivlf 296 (523)
.=-. |-+..+...+. .+|..++++++
T Consensus 122 v~T~lAkGnvalsv~lt---~~stLl~~~~~ 149 (328)
T TIGR00832 122 VWNQLAKGDPEYTLVLV---AVNSLFQVFLY 149 (328)
T ss_pred HHHHHcCCCHHHHHHHH---HHHHHHHHHHH
Confidence 3222 33444444333 55566665554
No 52
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=89.64 E-value=9.5 Score=39.54 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=66.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHH
Q psy5406 144 QYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTI 223 (523)
Q Consensus 144 ~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i 223 (523)
+.++..+.-++.|+++|.... ......+.+-.++..+.+..+ =+---|.+++.+++.+.+++.+......+..
T Consensus 29 ~~l~~~~~AillG~~l~n~~~---~~~~~~~~~Gi~f~~k~lLr~----gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~ 101 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIY---PQRDEEKKRGVLFAKPFLLRI----GITLYGFRLTFPYIADVGPNEIVADTLILTS 101 (335)
T ss_pred CCCcHHHHHHHHHHHHhcccc---ccchhhccchHHHHHHHHHHH----HHHHHCccccHHHHHHhhHHHHHHHHHHHHH
Confidence 457888888888888774211 001111112122333344444 3344589999999999998887766655555
Q ss_pred HHHHHHHHH-HHHhhcccccCCCHHHHHHHh---ccccCccHHHHHHHHhh
Q psy5406 224 SAFVIGAGV-YILGLADVAYKLSFVESFAFG---SLISAVDPVATVAIFHA 270 (523)
Q Consensus 224 ~~~~v~~~~-~~l~~~~~~~~l~~~~alllG---ailsaTDPv~v~~il~~ 270 (523)
+.....+.. .+ ++++...+++.| +|+.++.-+++.++.|.
T Consensus 102 ~~~~~~~~g~k~-------l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A 145 (335)
T TIGR00698 102 TFFLTVFLGSSR-------LKLDKQMSILLGAGSSICGAAAVAAIEPVIKA 145 (335)
T ss_pred HHHHHHHHHHHH-------hCCChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence 443333333 23 578888899988 45566666666666553
No 53
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=89.62 E-value=7.2 Score=36.32 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCc---
Q psy5406 127 VLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHK--- 203 (523)
Q Consensus 127 ~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~--- 203 (523)
.+.++..++++-.+ +-.++-...+.+++|+++|..-...+.. .... -++.+.++.|..-++..|++--.
T Consensus 5 ~i~lG~llG~i~i~-~~~~LG~a~G~L~vgL~~G~~~~~~~~~------~~~~-~~~~l~~~GL~lFl~~VGl~aG~~F~ 76 (169)
T PF06826_consen 5 GIALGYLLGRIKIP-GGFSLGAAGGVLFVGLILGALGRTGPIF------LPIS-APSFLRQLGLALFLAAVGLSAGPGFF 76 (169)
T ss_pred HHHHHHHhcceeec-cceeccccHHHHHHHHHHHHhhhccCCC------CCcc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555544321 2256788889999999999753211100 0111 24567788888888888887764
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccH
Q psy5406 204 GNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDP 261 (523)
Q Consensus 204 ~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDP 261 (523)
+.+|++......+++.-+.++.++.....+++ ++++. ..+.|.+..+ |+|
T Consensus 77 ~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~------~~l~~--~~~~G~~aGa~T~t 127 (169)
T PF06826_consen 77 SSLKRGGLKLLLLGVIITLVPLLIALVIGRYL------FKLNP--GIAAGILAGALTST 127 (169)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCH--HHHHHHHHccccCc
Confidence 45666666777777777777766665555533 45554 4445555544 444
No 54
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=89.25 E-value=33 Score=36.46 Aligned_cols=162 Identities=13% Similarity=0.116 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
.+.++.+.+.++..+...+++.. ..+|.-+..++.|+++-.+.......+. .+ . .-+.+..+.|-+.+-.+=.
T Consensus 220 ~l~~i~iai~iG~~i~~~l~~~~-~~lP~fv~am~~giiirni~~~~~~~~~---~~-~--~i~~I~~~sLdlfl~~Alm 292 (398)
T TIGR00210 220 TIALIAVCLLVGYELNDLVAKTA-LMLPTFVWCLFVGVILRNPLSFKKFPWV---AE-R--AVSVIGNVSLSLFLAIALM 292 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHHHHHHHhCcccc---ch-H--HHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777776544 5699999999999998876543222111 11 1 1256777888888888889
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH-----HhccccCc--cHHHHHHHHhhCC
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFA-----FGSLISAV--DPVATVAIFHALD 272 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~all-----lGailsaT--DPv~v~~il~~~~ 272 (523)
+++..++.+++.+++.+.+.+++++.+..-+..+-. .+-+ .++.. .|--+.+| .-+-.-++-+++|
T Consensus 293 sL~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~------mg~~-ydaaV~~ag~~G~~lGatptaianm~av~~~yg 365 (398)
T TIGR00210 293 SLQLWELADLAGPIALILLVQVMFMALYAIFVTFRL------MGKD-YDAAVLCAGHCGFGLGATPTAIANMQAVTERFG 365 (398)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh------ccch-HHHHHHhcccccccccchHHHHHHHHHHHhccC
Confidence 999999999999999999999999876655555442 3334 44444 34444443 3334445666776
Q ss_pred CChhHHHHH-hhhhhccchhHHHH
Q psy5406 273 VDPVLNMLV-FGESILNDAIAIVL 295 (523)
Q Consensus 273 ~~~~l~~ll-~gES~lND~~aivl 295 (523)
..++-.-++ .--+.+-|..-..+
T Consensus 366 ~s~~af~ivPlvgaf~id~~n~~~ 389 (398)
T TIGR00210 366 PSHQAFIVVPLVGAFFIDIINALV 389 (398)
T ss_pred CCCcceehhhhHHHHHHHHhhHHH
Confidence 655444333 33344444443333
No 55
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.88 E-value=6.2 Score=40.92 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhc-CCcHhHHHhH-HHHHHHHHHH
Q psy5406 143 FQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYN-LHKGNFFQNI-GSILVFAIIG 220 (523)
Q Consensus 143 ~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~-l~~~~~~~~~-~~il~la~~g 220 (523)
++.+|..+.++++|+++-.. +..+. +..+-.+ .+ .+++..-+..+++.-.|+. .|++++-+.+ ++.+.+.+.+
T Consensus 201 ~~~Ih~~v~mII~~vi~k~~-gllp~-~i~~~a~--~~-~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~ 275 (347)
T TIGR00783 201 FPGIPAYAFMILIAAALKAF-GLVPK-EIEEGAK--ML-SQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSV 275 (347)
T ss_pred cccCCHHHHHHHHHHHHHHh-CCCCH-HHHHHHH--HH-HHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHH
Confidence 35689999999999888753 22222 1110000 01 2356666778888888987 8999999988 5555544444
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccc-c---CccHHHHHHHHhhCC
Q psy5406 221 TTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLI-S---AVDPVATVAIFHALD 272 (523)
Q Consensus 221 ~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGail-s---aTDPv~v~~il~~~~ 272 (523)
++-..+..++.-++ +|+.+.|+.+-+.++ + -|.=+++++--++.+
T Consensus 276 Vlg~ii~s~lvGKl-------lG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~ 324 (347)
T TIGR00783 276 VVAMILGGAFLGKL-------MGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMN 324 (347)
T ss_pred HHHHHHHHHHHHHH-------hCCChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence 43332222233344 467777776665522 2 255555666555543
No 56
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=88.65 E-value=0.26 Score=52.95 Aligned_cols=50 Identities=22% Similarity=0.498 Sum_probs=45.4
Q ss_pred CcchhhHHhhhhccccCCChHH-HHHHHHHHHHHHhhhhhhhhhhcccccc
Q psy5406 1 MAILFNGIVMSHYTHYNLSTVT-QITMQQTMRTLSFIAETCVFAYLGKNIS 50 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~~n~s~~~-~~~~~~~~~~~~~~~e~~if~~lg~~~~ 50 (523)
+|++.+|+++++|.+.|.++.+ |...+++.++++++.+.++|+++|.++.
T Consensus 250 lAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~ 300 (429)
T COG0025 250 LAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLP 300 (429)
T ss_pred HHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678899999988899999866 9999999999999999999999999875
No 57
>COG2431 Predicted membrane protein [Function unknown]
Probab=88.64 E-value=3.2 Score=41.29 Aligned_cols=89 Identities=21% Similarity=0.232 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCC---cHhHHHhH-HHHHHHHHHHHHH
Q psy5406 148 ESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLH---KGNFFQNI-GSILVFAIIGTTI 223 (523)
Q Consensus 148 ~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~---~~~~~~~~-~~il~la~~g~~i 223 (523)
..++.++.|.++|.+.+.. . .+++.-.+..|-.++|..|+++. ....++.. |+.+.+++ -+++
T Consensus 108 k~~~~vl~g~~~G~l~~~~----~--------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~-i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF----L--------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAF-ITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccc----c--------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHH-HHHH
Confidence 4567778888888765421 1 12556677788899999999988 22112211 34444443 4556
Q ss_pred HHHHHHHHHHHHhhcccccCCCHHHHHHHhcc
Q psy5406 224 SAFVIGAGVYILGLADVAYKLSFVESFAFGSL 255 (523)
Q Consensus 224 ~~~~v~~~~~~l~~~~~~~~l~~~~alllGai 255 (523)
+..+.|....++ .++|+.+++.+++=
T Consensus 175 ssliGG~iaa~~------l~lpl~~~lAmasG 200 (297)
T COG2431 175 SSLIGGLIAAFL------LDLPLTTGLAMASG 200 (297)
T ss_pred HHHHHHHHHHHH------HhccHHHHHHHHhc
Confidence 667777776664 57888887776643
No 58
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=88.19 E-value=15 Score=38.06 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCc
Q psy5406 124 VLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHK 203 (523)
Q Consensus 124 ~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~ 203 (523)
+.+....+.+.+...++.| +|.. .++..++++.+.+.....+. + -|+.+..+.--.+--..|.++|+
T Consensus 190 ~~~l~~~~~~~g~l~~~lr---~Pa~--~ll~~l~l~a~v~~~~~~~~-------~-lP~wl~~va~~~iG~~IG~~f~~ 256 (352)
T COG3180 190 LLLLILAALLGGLLGKLLR---FPAP--TLLGPLLLGAIVHFGGGITI-------Q-LPAWLLAVAQALIGALIGSRFDR 256 (352)
T ss_pred HHHHHHHHHHHHHHHHHHc---CCcH--HHHHHHHHHHHhhcccceee-------e-CCHHHHHHHHHHHHHHHcccccH
Confidence 4445555555555556655 5755 45567777766654331111 1 25677777777888899999998
Q ss_pred HhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH
Q psy5406 204 GNFFQNIGSI--LVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFA 251 (523)
Q Consensus 204 ~~~~~~~~~i--l~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~all 251 (523)
..+++..+.. ..+.+++.++-+..++...+++ .+.++.++++
T Consensus 257 ~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~------~~i~~~ta~L 300 (352)
T COG3180 257 SILREAKRLLPAILVSIIALMAIAAGMAGLLSWL------TGIDLNTAYL 300 (352)
T ss_pred HHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHh------cCCCHHHHHH
Confidence 8887766632 2333334444344444444443 6899988876
No 59
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=87.97 E-value=12 Score=39.27 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
++.++.+.+.++..+.++.++.+ ..+|.-+..+++|+++-.+......+.+ +.. .-+.+.++.|.+.+=.+=.
T Consensus 223 ~~~~i~i~~~vG~~i~~~l~~~~-~~lP~fv~~lfvgiIvrni~~~~~~~~v----~~~--~v~~ig~vsL~lflamALm 295 (404)
T COG0786 223 TLAIIAICLAVGKIINQLLKSLG-LALPLFVMCLFVGVILRNILDLLKKYRV----FRR--AVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHHHhHHHHhccccc----cHH--HHHHHhhhHHHHHHHHHHH
Confidence 45566777778888888887755 6799999999999999876543322211 111 1257788888888888888
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHH
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFA 251 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~all 251 (523)
++++-++-+.+.+.+.+-.++++...+..-+..+-. .|-++..+.+
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~------mG~~YdAaV~ 341 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRL------MGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHH------hCcchhHHHH
Confidence 999999998888888877777777655444443332 3455555555
No 60
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=87.32 E-value=3.5 Score=42.19 Aligned_cols=138 Identities=19% Similarity=0.221 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcC--CcHhHHHhHHHHHHHHHHHHHH
Q psy5406 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNL--HKGNFFQNIGSILVFAIIGTTI 223 (523)
Q Consensus 146 lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l--~~~~~~~~~~~il~la~~g~~i 223 (523)
....+.+++-|+++|.+.+- +. +.+...|- +..+.-.|++.+.|-|+.- +.+++||..+..+.+++..=++
T Consensus 176 ~~~sv~LLlGgliIG~~~g~---~g---~~~i~pf~-~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli 248 (327)
T PF05982_consen 176 TNKSVVLLLGGLIIGFLAGP---EG---VESIKPFF-VDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLI 248 (327)
T ss_pred cCchHHHHHHHHHHhheeCc---cc---hhhccchh-hccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHH
Confidence 35567788889999976431 11 11111111 2356667888888888854 3567888888777777766666
Q ss_pred HHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhC--CCChhHHHHHhhhhh-----ccchhHHHHH
Q psy5406 224 SAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHAL--DVDPVLNMLVFGESI-----LNDAIAIVLT 296 (523)
Q Consensus 224 ~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~--~~~~~l~~ll~gES~-----lND~~aivlf 296 (523)
...+.....++ .|++.-.+.+++.+.++-+=.++-+.+|.- +.++.++- +.|+ +|=.++|++|
T Consensus 249 ~a~ig~~lg~~-------~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl---~~SLgiTFPfNi~iGIPLY 318 (327)
T PF05982_consen 249 NALIGIGLGWL-------LGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYL---TASLGITFPFNILIGIPLY 318 (327)
T ss_pred HHHHHHHHHHH-------hCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHH---HHHHhcccchhHhhccHHH
Confidence 64444333444 489999999999999988877777777742 33333333 2222 4555555555
Q ss_pred HHHH
Q psy5406 297 TSIL 300 (523)
Q Consensus 297 ~~~~ 300 (523)
.-+.
T Consensus 319 ~~la 322 (327)
T PF05982_consen 319 YALA 322 (327)
T ss_pred HHHH
Confidence 4443
No 61
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=86.93 E-value=9.8 Score=40.38 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhc-CCcHhHHHhHH
Q psy5406 133 LLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYN-LHKGNFFQNIG 211 (523)
Q Consensus 133 ~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~-l~~~~~~~~~~ 211 (523)
.++.+..|. ..+|....+++.-+++=. .+..++ ++++ ...--.+++..-+.+++++-.|.. +|++++.+.+.
T Consensus 260 ~~G~ll~~~--i~ih~~a~mIi~~~i~K~-~~lvP~-~~e~---~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t 332 (414)
T PF03390_consen 260 ILGVLLSKL--IGIHAYAWMIILVAIVKA-FGLVPE-SLEE---GAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFT 332 (414)
T ss_pred HHHHHHHHh--cCCcHHHHHHHHHHHHHH-hCcCCH-HHHH---HHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhC
Confidence 334444443 368999887766555542 222221 1110 000013567778899999999998 99999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhcccc----CccHHHHHHHHhhCC
Q psy5406 212 SILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLIS----AVDPVATVAIFHALD 272 (523)
Q Consensus 212 ~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGails----aTDPv~v~~il~~~~ 272 (523)
...++-+..+++...+.+...-.+ .|+...|+.+-+.++. -|.=+++++--++.+
T Consensus 333 ~~~vv~~~~~Vl~~~~~a~~vG~l------~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 333 PQYVVIVLATVLGAVIGAFLVGKL------VGFYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 766666666666655555544332 5787888777776332 255556666666554
No 62
>PRK04972 putative transporter; Provisional
Probab=85.82 E-value=7.2 Score=43.40 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhc
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYN 200 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~ 200 (523)
++.+.+.+.++.+++++- .+-.++-...+-+++|+++|.... .+ ++...++.|.+-+|..|++
T Consensus 14 ~~~lf~~i~lG~~lG~i~--~~~~~LG~~~g~L~vgl~~g~~~~--------------~~-~~~~~~~gl~lF~~~vG~~ 76 (558)
T PRK04972 14 ILLLFVVLALGLCLGKLR--LGSIQLGNSIGVLVVSLLLGQQHF--------------SI-NTDALNLGFMLFIFCVGVE 76 (558)
T ss_pred hHHHHHHHHHHHhhhceE--EeeEecCcchHHHHHHHHHHhCCC--------------CC-ChHHHHHHHHHHHHHHhhh
Confidence 444555666666666543 232457777799999999996310 12 2234567888888888888
Q ss_pred CCcH---hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 201 LHKG---NFFQNIGSILVFAIIGTTISAFVIGAGVYI 234 (523)
Q Consensus 201 l~~~---~~~~~~~~il~la~~g~~i~~~~v~~~~~~ 234 (523)
--.+ .+|++......+++.-+++..++.....++
T Consensus 77 ~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 113 (558)
T PRK04972 77 AGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKL 113 (558)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8754 455555566666666666654444444444
No 63
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=84.87 E-value=47 Score=33.55 Aligned_cols=101 Identities=25% Similarity=0.216 Sum_probs=54.1
Q ss_pred hhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHH-
Q psy5406 189 LLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAI- 267 (523)
Q Consensus 189 ~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~i- 267 (523)
.+..++|..|.+++.+++++..++--. ...+++...++.-+..+.++. .+++ ...+..|.++.+.-|.++.+.
T Consensus 13 ~l~~~m~~~G~~l~~~~~~~~~~~p~~-~~~~~~~~~vi~Plla~~l~~---~~~l--~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 13 LLFLIMFSMGCTLEFEDFKGHLRKPWG-VIIGLLAQYGIMPLTGFLLAK---VFKL--PPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHHccCCCcHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHH---HhCC--CHHHHHHHHheeeCCCchHHHH
Confidence 377899999999999999987762111 111222333333333333221 1233 345566666666555555443
Q ss_pred -HhhCCCChhHHHHHhhhhhccchhHHHH
Q psy5406 268 -FHALDVDPVLNMLVFGESILNDAIAIVL 295 (523)
Q Consensus 268 -l~~~~~~~~l~~ll~gES~lND~~aivl 295 (523)
-+..|-+.++...+..-|.+=..+.+.+
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl 115 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPL 115 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHH
Confidence 2234667777665555444433444433
No 64
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=84.30 E-value=60 Score=34.32 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHH
Q psy5406 145 YLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILV 215 (523)
Q Consensus 145 ~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~ 215 (523)
++|.++...+.|+++.-.... +++.- .. -.+......+|.-++.-=++.|.|+++|..++.+.
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli-~~p~~------s~-~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~ 86 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLI-DSPAS------SP-VYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL 86 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCc-CCCCc------ch-HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH
Confidence 699999999999999864322 11100 00 12567777888888888889999999998876443
No 65
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=84.17 E-value=44 Score=32.78 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=34.1
Q ss_pred hHHHhhHHHH--HHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 185 FFLVLLPPII--FESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 185 ~~~i~Lp~Il--F~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
+...+|.|-. +..=+.-+++.+||++++++.-.+.|.+++.+......+++
T Consensus 66 ~l~~lLgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~l 118 (232)
T PRK04288 66 IISFFLEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLI 118 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 33334556889999999999888888888766555555554
No 66
>PRK03818 putative transporter; Validated
Probab=83.61 E-value=11 Score=41.78 Aligned_cols=95 Identities=14% Similarity=0.210 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccCh---hHhHHHhhHHHHHH
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSP---TAFFLVLLPPIIFE 196 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~---~~~~~i~Lp~IlF~ 196 (523)
.++.+.+.+.++.+++++ |.+-.++- ..+.+++|+++|.+.. .+ . ..+++ +.+-++.|..-+|.
T Consensus 7 ~~~~l~l~i~lG~~lG~i--~i~g~~LG-~~g~L~~gl~~G~~~~-----~~-~----~~~~~~~~~~~~~~gl~lFv~~ 73 (552)
T PRK03818 7 TVSILALVAVVGLWIGNI--KIRGVGLG-IGGVLFGGIIVGHFVS-----QF-G----LTLDSDMLHFIQEFGLILFVYT 73 (552)
T ss_pred HHHHHHHHHHHHHhhcce--EECCCccc-cHHHHHHHHHHhcccc-----cc-C----cccChHHHHHHHHHHHHHHHHH
Confidence 355666677777777762 22223344 4788888888885321 00 0 01121 34667888888999
Q ss_pred hhhcCCcH---hHHHhHHHHHHHHHHHHHHHHHH
Q psy5406 197 SGYNLHKG---NFFQNIGSILVFAIIGTTISAFV 227 (523)
Q Consensus 197 ~G~~l~~~---~~~~~~~~il~la~~g~~i~~~~ 227 (523)
.|++--.+ .+|++......+++.-++.+.++
T Consensus 74 vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~ 107 (552)
T PRK03818 74 IGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV 107 (552)
T ss_pred HhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99988854 45555556666666666665444
No 67
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=82.95 E-value=16 Score=37.36 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=44.4
Q ss_pred hhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHh
Q psy5406 189 LLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFG 253 (523)
Q Consensus 189 ~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllG 253 (523)
.+|+..|.-|.++|.+++.+.+.+.+.+++.-++++....-+.-.+ ++.+-..+++.|
T Consensus 197 ~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rl-------lg~~~~~g~li~ 254 (312)
T PRK12460 197 LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRL-------VGGTGIAGAAAS 254 (312)
T ss_pred eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH-------hCCChhHHHHHH
Confidence 7788899999999999999999999988887776664333333222 377777788888
No 68
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=82.84 E-value=67 Score=33.80 Aligned_cols=142 Identities=15% Similarity=0.211 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhh
Q psy5406 119 IAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG 198 (523)
Q Consensus 119 ~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G 198 (523)
.++.+..++++++..+++-++-.+...+|+++.-=+.+.++...++.....+ ..+|.. +-..++.+..=..|
T Consensus 7 ~tl~la~ilLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~~-------~~f~~~-l~~~lm~~fF~~ig 78 (368)
T PF03616_consen 7 QTLALASILLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGIS-------ISFDTS-LQDFLMIIFFTTIG 78 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCceE-------EEechh-HHHHHHHHHHHHHh
Confidence 3455666777888777665543334679988754444555554444322211 224432 22232222333567
Q ss_pred hcCCcHhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccCCCHHHHHHHhc--cccCccHHHHH-HHHhhC-C
Q psy5406 199 YNLHKGNFFQNIGSILVFAIIGTTISAF--VIGAGVYILGLADVAYKLSFVESFAFGS--LISAVDPVATV-AIFHAL-D 272 (523)
Q Consensus 199 ~~l~~~~~~~~~~~il~la~~g~~i~~~--~v~~~~~~l~~~~~~~~l~~~~alllGa--ilsaTDPv~v~-~il~~~-~ 272 (523)
+.-+.+.+||-++.+..+......+..+ ++|..+-. .++++....++.|+ ...-...++.. +.++|. +
T Consensus 79 L~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~------l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~~fe~~~G 152 (368)
T PF03616_consen 79 LGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAK------LLGLDPLFGLLAGSIGFTGGHGTAAAFGPTFEELYG 152 (368)
T ss_pred hccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCCchHHHHhccccccCCccHHHHHHHHHHHhcC
Confidence 8888999999888777665544333221 23332211 14566666666663 23333333333 366654 5
Q ss_pred CC
Q psy5406 273 VD 274 (523)
Q Consensus 273 ~~ 274 (523)
.+
T Consensus 153 ~~ 154 (368)
T PF03616_consen 153 WE 154 (368)
T ss_pred hh
Confidence 43
No 69
>PRK05326 potassium/proton antiporter; Reviewed
Probab=79.47 E-value=24 Score=39.23 Aligned_cols=65 Identities=6% Similarity=0.130 Sum_probs=38.1
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcccccCCCHHHHHHHhc
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTIS-AFVIGAGVYILGLADVAYKLSFVESFAFGS 254 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~-~~~v~~~~~~l~~~~~~~~l~~~~alllGa 254 (523)
+.+..++.++..+..|+.+|.+.+.+.....+.+++...++. .+.+.... ..+++++.+++.+|-
T Consensus 273 ~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~-------~~~~~~~~e~~~i~~ 338 (562)
T PRK05326 273 DGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSL-------LPFRFNLREKLFISW 338 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCCCCHhhhheeee
Confidence 345567778888889999999888766555444443222221 11111111 235788888877775
No 70
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=76.67 E-value=98 Score=32.02 Aligned_cols=126 Identities=11% Similarity=0.127 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHH---HhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHH
Q psy5406 145 YLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFL---VLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGT 221 (523)
Q Consensus 145 ~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~---i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~ 221 (523)
|+|. +++++.+++|...+-+-++ .. ....|....|-+ -.+...+|..|-++|.|+-.+..+....+...=+
T Consensus 11 kiPg--g~m~vpl~~g~~i~tf~P~-~~---~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~ 84 (326)
T PRK05274 11 KIPG--GMMLVPLLLGALINTFAPG-AL---YFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTLLLTKF 84 (326)
T ss_pred cCCc--ceeeHHHHHHHHHHHhCCc-ce---eeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhHHHHHH
Confidence 4775 4666777777755533221 11 112233333322 2345668999999999887666555444433333
Q ss_pred HHHHHHHHHHH-HHHhhcccccCC-CHHHHHHHhccccCccHHHHHHHHhhCCCChhH
Q psy5406 222 TISAFVIGAGV-YILGLADVAYKL-SFVESFAFGSLISAVDPVATVAIFHALDVDPVL 277 (523)
Q Consensus 222 ~i~~~~v~~~~-~~l~~~~~~~~l-~~~~alllGailsaTDPv~v~~il~~~~~~~~l 277 (523)
.+. .+.+... .+.+..++..++ --...+-..+.+.-+|+..-.+...+++-+++.
T Consensus 85 ~~~-~~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g~~~d~ 141 (326)
T PRK05274 85 AVA-ALVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYGTKEDA 141 (326)
T ss_pred HHH-HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCCc
Confidence 333 2222222 121100000011 012234455778888888888888777655443
No 71
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=75.64 E-value=32 Score=37.17 Aligned_cols=142 Identities=14% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhh-------------hc---CCcHhHHHh
Q psy5406 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG-------------YN---LHKGNFFQN 209 (523)
Q Consensus 146 lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G-------------~~---l~~~~~~~~ 209 (523)
+|...+..+.|++-|.+...+... +.......+++|.++=.+| +. ++.++.++.
T Consensus 285 ~~wL~v~~~~~~~t~~ii~~f~~~----------l~~~~~l~~~iP~i~~~~Gn~G~qs~~~~~r~l~~g~i~~~~~~~~ 354 (449)
T TIGR00400 285 IIWLLVLLVSSTFTATIISNYEDL----------LLSLVALANFIPLLMDTSGNAGSQSSAVVIRGLALETVKVKDFFKV 354 (449)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcCCCccchHHHH
Confidence 788888888998888766543221 1122344455666554333 33 355554444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhcc
Q psy5406 210 I-GSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILN 288 (523)
Q Consensus 210 ~-~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lN 288 (523)
. +.+..-.+.|.++. ++.+...++++. ....+.....++++..++++.-=...--+++++|.+|.....-. -+.++
T Consensus 355 ~~~e~~v~~~~g~~~g-~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~G~~lp~~~~k~~~DPa~~s~p~-itt~~ 431 (449)
T TIGR00400 355 ILREICVSILVGAILA-SVNFLRIVFFQG-KLLIAFVVSSSLFVSLTVAKILGGLLPIVAKLLKLDPALMSGPL-ITTIA 431 (449)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhhH-HHHHH
Confidence 3 33333333333332 333333443310 00111112222222222222221222245667788777655332 35567
Q ss_pred chhHHHHHHHHH
Q psy5406 289 DAIAIVLTTSIL 300 (523)
Q Consensus 289 D~~aivlf~~~~ 300 (523)
|.+++++|..+.
T Consensus 432 D~~g~~~~~~~a 443 (449)
T TIGR00400 432 DALTLIIYFNIA 443 (449)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 72
>COG3329 Predicted permease [General function prediction only]
Probab=74.73 E-value=11 Score=38.25 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCC--cHhHHHhHHHHHHHHHHHHHH
Q psy5406 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLH--KGNFFQNIGSILVFAIIGTTI 223 (523)
Q Consensus 146 lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~--~~~~~~~~~~il~la~~g~~i 223 (523)
+-..+.+++.|+++|.+.+.-..+-.. .| .+-.+.-.|++.+.+-|++-. .+++||...-.+.++++.=++
T Consensus 216 lnpal~lllggl~iGlitGe~g~~vl~------~F-~~~lFqGvL~lflL~MGm~A~rrl~elrk~g~~~v~fgllaPil 288 (372)
T COG3329 216 LNPALVLLLGGLAIGLITGEQGESVLK------PF-FDPLFQGVLCLFLLDMGMTAGRRLKELRKVGQGLVLFGLLAPIL 288 (372)
T ss_pred cCchHHHHHHHHHHhheeccCchhhhh------hh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCcceehHHHHHHHH
Confidence 566777888999999765422211111 11 123566678888888888654 446666555444444433333
Q ss_pred HHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhh-----hccchhHHHHHHH
Q psy5406 224 SAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGES-----ILNDAIAIVLTTS 298 (523)
Q Consensus 224 ~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES-----~lND~~aivlf~~ 298 (523)
...+.-...+.. ++..|++.....+++.+.++.+=.++-+.+| ..+|+--..+-.|.| -+|=.++|++|.-
T Consensus 289 ~g~ig~~lg~~a---~y~tgfs~g~~vllAVlaaSaSyIa~PaalR-~~iPeAnPs~yl~~Slgvtfpfni~igIPLyi~ 364 (372)
T COG3329 289 HGFIGLLLGMIA---GYPTGFSDGGVVLLAVLAASASYIAVPAALR-LAIPEANPSLYLGASLGVTFPFNITIGIPLYIE 364 (372)
T ss_pred HHHHHHHHHHHh---cccccCCCcchHHHHHHhcchhhccccHHHh-ccCCCCCCcceeehhhccccceeeeechHHHHH
Confidence 222111111221 2334555555788888887777667767765 566554444444444 3677777777744
Q ss_pred HH
Q psy5406 299 IL 300 (523)
Q Consensus 299 ~~ 300 (523)
+.
T Consensus 365 ~A 366 (372)
T COG3329 365 LA 366 (372)
T ss_pred HH
Confidence 33
No 73
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=72.73 E-value=1.1e+02 Score=32.58 Aligned_cols=120 Identities=17% Similarity=0.227 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGY 199 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~ 199 (523)
++.+..++++++..+.+-.+-.+...+|+++.- |++...+....+ +...+ ...+|.+ +-..++.+.-=..|+
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViG---Gll~al~l~l~~--~~~~~--~~~fd~~-l~~~lm~~fFatigL 79 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVG---GVLVALALLLIY--KIFGT--EVNFDFS-LRDPLMLIFFTTIGL 79 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH---HHHHHHHHHHHH--HhccE--EEEcChh-HHHHHHHHHHHHhhh
Confidence 455666777888777666543333679988643 333211111100 00001 1234433 333443334445677
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcccccCCCHHHHHHHh
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAF--VIGAGVYILGLADVAYKLSFVESFAFG 253 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~--~v~~~~~~l~~~~~~~~l~~~~alllG 253 (523)
.-+.+.+||-.++.+.+.......... ++|..+-. .+|++...+++.|
T Consensus 80 ga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~------~~gl~P~~Gll~g 129 (398)
T TIGR00210 80 SANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMAS------LLGQAPLMGLLAG 129 (398)
T ss_pred cCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCChHHHHHhh
Confidence 788888999888877666554433322 22222211 2467776666654
No 74
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=71.65 E-value=66 Score=33.76 Aligned_cols=84 Identities=17% Similarity=0.087 Sum_probs=55.5
Q ss_pred hHhHHHhhHHHHHHhhhc-CCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHh-cccc---
Q psy5406 183 TAFFLVLLPPIIFESGYN-LHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFG-SLIS--- 257 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~-l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllG-ails--- 257 (523)
++|..=..=++++..|.. .|+++.-+....-.++-+..+++.....++..-++ .|+.+.++..-+ .+-+
T Consensus 322 ~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl------~~~YPVEaAI~aglC~a~~G 395 (438)
T COG3493 322 QFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRL------MGFYPVEAAITAGLCMANMG 395 (438)
T ss_pred HHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH------hcCCchHHHHHHhHHhcCCC
Confidence 345555566889999997 99999988777666666666667666665544333 567777766655 5444
Q ss_pred CccHHHHHHHHhhCC
Q psy5406 258 AVDPVATVAIFHALD 272 (523)
Q Consensus 258 aTDPv~v~~il~~~~ 272 (523)
.|.=+++++--++++
T Consensus 396 GtGDvaVLsAa~RM~ 410 (438)
T COG3493 396 GTGDVAVLSAADRME 410 (438)
T ss_pred CCCchHHhhhcchhc
Confidence 366667776666554
No 75
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=71.55 E-value=1.3e+02 Score=31.28 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHH-HHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIA-IVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESG 198 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~-~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G 198 (523)
....+...+.++...+.+..+.+.+ .|...+ .+++|++.+.- ..+ -.-|+.++......+--..|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vP-a~~mlG~~l~a~~v~~~~-----~~~--------l~~P~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVP-AAWMLGAPLLAGIVAGLR-----GLT--------LPLPRGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhc-----ccc--------ccCChHHHHHHHHHHHHHHh
Confidence 3455667777777888888777632 444445 44555555411 111 11356777777788888899
Q ss_pred hcCCcHh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCCh
Q psy5406 199 YNLHKGN---FFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDP 275 (523)
Q Consensus 199 ~~l~~~~---~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~ 275 (523)
.++.... ++++|...+...+. ++....+.++.+.-. -++|-.+|++ |+ +|=...+.+.+-+|+|.|.
T Consensus 73 ~~~t~s~l~~l~~~w~~~~~v~~~-tl~~s~l~g~ll~r~------~~~~~~Ta~~-gs--~PGgas~m~~iA~d~gAd~ 142 (352)
T COG3180 73 ASLTPSVLDTLKSNWPIVLVVLLL-TLLSSILLGWLLKRF------SILPGNTAFL-GS--SPGGASAMVSIAQDYGADL 142 (352)
T ss_pred hhcCHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHHHHHh------cCCCcchhhH-hc--CCchHHHHHHHHHHhCCCh
Confidence 9988664 44555554444443 333334444444332 1466666654 33 2333445555668899998
Q ss_pred hHHHHHhhhhhccchhHHH
Q psy5406 276 VLNMLVFGESILNDAIAIV 294 (523)
Q Consensus 276 ~l~~ll~gES~lND~~aiv 294 (523)
+.-.....-=++--...++
T Consensus 143 ~~VAl~Q~lRvl~Vvl~vp 161 (352)
T COG3180 143 RLVALMQYLRVLFVVLLAP 161 (352)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 8877666555444334443
No 76
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=70.26 E-value=55 Score=36.49 Aligned_cols=107 Identities=13% Similarity=0.059 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccccCh---hHhHHHhhHHHHHHhhhcCCc---HhHHHhHHHHHHHHHHHH
Q psy5406 148 ESIAIVFLGALIGMIINLMSNKNIANWHKEETFSP---TAFFLVLLPPIIFESGYNLHK---GNFFQNIGSILVFAIIGT 221 (523)
Q Consensus 148 ~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~---~~~~~i~Lp~IlF~~G~~l~~---~~~~~~~~~il~la~~g~ 221 (523)
...+.+++|+++|.+.. .....| .+++ ..+-++.|..-++..|++--. +.++++++..+.+++.-+
T Consensus 417 ~~~g~l~~gl~~g~~~~----~~~~~~----~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~ 488 (562)
T TIGR03802 417 TGGGALISGLVFGWLRS----KHPTFG----NIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVT 488 (562)
T ss_pred hhHHHHHHHHHHHHhcc----cCCcce----ecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 34567777777775421 111111 1222 246667777777777777664 355666777777777777
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccHHHHHHHHhh
Q psy5406 222 TISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDPVATVAIFHA 270 (523)
Q Consensus 222 ~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDPv~v~~il~~ 270 (523)
+++.++..+..+.+ +++++ ....|++..+ |+|.+.-...+.
T Consensus 489 ~~~~~~~~~~~~~~------~~~~~--~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 489 ILPLIITMLIGKYV------LKYDP--ALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHHHH------hCCCH--HHHHHHhhccCCCcHHHHHHHHh
Confidence 77766666666433 45665 4677777666 666555444443
No 77
>PRK04972 putative transporter; Provisional
Probab=65.58 E-value=67 Score=35.79 Aligned_cols=135 Identities=12% Similarity=0.137 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccC--CCCCHHHHHHHHHHHHHHHHhhhhcccccccccccccCh---hHhHHHhhHHHH
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHF--QYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSP---TAFFLVLLPPII 194 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~--~~lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~---~~~~~i~Lp~Il 194 (523)
+...+.+-++++.+++..-.+.+- ..+-...+.+++|+++|.+-.. ....| .+.+ ..+-++.|..-+
T Consensus 382 d~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~----~~~~~----~~p~~a~~~l~~~GL~lFl 453 (558)
T PRK04972 382 DLLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRAN----HPTFG----YIPQGALNMVKEFGLMVFM 453 (558)
T ss_pred cHHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhcccc----CCCce----eeCHHHHHHHHHHhHHHHH
Confidence 455556667777777655443320 1223345788888888864221 11111 1211 355666666666
Q ss_pred HHhhhcCC---cHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccHHHHHHHHhh
Q psy5406 195 FESGYNLH---KGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDPVATVAIFHA 270 (523)
Q Consensus 195 F~~G~~l~---~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDPv~v~~il~~ 270 (523)
...|++-- .+.++++++..+..++.-++++.++..+..+++ +++++. .+.|++..+ |+|.+.-+..+.
T Consensus 454 a~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~------~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 454 AGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYV------LRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 66665544 335666777888888888888777666666554 467665 677888776 676655555443
No 78
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=60.31 E-value=1.7e+02 Score=28.52 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=48.5
Q ss_pred HHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHH--HHHHHhccccCccHHHHHHHHhh
Q psy5406 193 IIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFV--ESFAFGSLISAVDPVATVAIFHA 270 (523)
Q Consensus 193 IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~--~alllGailsaTDPv~v~~il~~ 270 (523)
+-|..=+.=+++.+||+|++++.-.+.|.+...........++ +++-. .+++ ==|.|.|.+. .+-++
T Consensus 73 VAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~-------g~~~~~~~Sl~---PkSvTTpiAm-~vs~~ 141 (230)
T COG1346 73 VALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLF-------GLSPELILSLL---PKSVTTPIAM-EVSES 141 (230)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCCHHHHHHhc---ccccccHHHH-HHHHh
Confidence 3455555667899999999999988888888766666666664 34332 2221 1245667554 67777
Q ss_pred CCCChhHHH
Q psy5406 271 LDVDPVLNM 279 (523)
Q Consensus 271 ~~~~~~l~~ 279 (523)
+|-.+.+..
T Consensus 142 iGGip~lta 150 (230)
T COG1346 142 IGGIPALTA 150 (230)
T ss_pred cCCchHHHH
Confidence 765555544
No 79
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=59.20 E-value=89 Score=28.20 Aligned_cols=40 Identities=15% Similarity=-0.017 Sum_probs=33.0
Q ss_pred HhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 196 ESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 196 ~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
..|.--.++.+++++++++..-+.+++++.+++|....++
T Consensus 77 gVGim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~l 116 (141)
T PRK04125 77 GISVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQFI 116 (141)
T ss_pred HhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667889999999999999999999988888776554
No 80
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=59.00 E-value=90 Score=33.32 Aligned_cols=64 Identities=11% Similarity=0.221 Sum_probs=50.7
Q ss_pred hhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHH
Q psy5406 182 PTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAF 252 (523)
Q Consensus 182 ~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alll 252 (523)
..-|.+++...++--+=+.+|++-+.|.....+-..+.+++..++..+..-+. +|.++.+++++
T Consensus 92 ~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l-------~G~~~~~~i~~ 155 (414)
T PF03390_consen 92 GSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGML-------FGYSFKDAIFY 155 (414)
T ss_pred cCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCHHHHHHH
Confidence 34688888899999999999999999999988887777777766655555444 47888888775
No 81
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=55.44 E-value=1.6e+02 Score=28.48 Aligned_cols=51 Identities=24% Similarity=0.243 Sum_probs=35.7
Q ss_pred hHHHhhHHHHHHhhhcC--CcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 185 FFLVLLPPIIFESGYNL--HKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l--~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
+...+|-|-.-.-|+-+ +++.+|||+++++.-.+.|.+++.+......+++
T Consensus 50 ~l~~lLgPatVALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~l 102 (215)
T PF04172_consen 50 ILSFLLGPATVALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLL 102 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444443 5789999999999988888888866666666664
No 82
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=55.36 E-value=2.1e+02 Score=27.95 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHhhHHHHH--HhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 186 FLVLLPPIIF--ESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 186 ~~i~Lp~IlF--~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
...+|-|-.- ..=+.-+++.+||++++++.--..|.+++.+......+++
T Consensus 61 l~~lLgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~l 112 (226)
T TIGR00659 61 INDLLGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLL 112 (226)
T ss_pred HHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444333 3333556889999999999877888877765555555554
No 83
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=54.58 E-value=1.7e+02 Score=26.73 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcH---hHHHhH-HHHHHHHHHHH
Q psy5406 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKG---NFFQNI-GSILVFAIIGT 221 (523)
Q Consensus 146 lP~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~---~~~~~~-~~il~la~~g~ 221 (523)
+-...+.+++|+++|.+-. .....|..... -++.+-++.|..-++..|++--.+ .+|++. ...+.+....+
T Consensus 21 LG~~~G~L~vgL~~G~~~~----~~p~~~~~p~~-~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~ 95 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGA----TGPLTWYIPFS-ANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALIT 95 (154)
T ss_pred ecccHHHHHHHHHHHhccc----cCCcceecChh-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHH
Confidence 3446688888888886421 11111211111 134566788888888888877754 344433 22333334444
Q ss_pred HHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccHHHHHHHHh
Q psy5406 222 TISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDPVATVAIFH 269 (523)
Q Consensus 222 ~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDPv~v~~il~ 269 (523)
+++.+++.+..+.+ +++++ ....|.+..+ |+|.+.-+..+
T Consensus 96 ~~~~~~~~~~~~~~------~~~~~--~~~~G~~aGa~T~tpaL~aa~~ 136 (154)
T TIGR01625 96 VVPTLLVAVALIKL------LRINY--ALTAGMLAGATTNTPALDAAND 136 (154)
T ss_pred HHHHHHHHHHHHHH------hCCCH--HHHHHHHhccccChHHHHHHHH
Confidence 44444444444332 46665 4666777666 55555444444
No 84
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=54.42 E-value=1.7e+02 Score=29.71 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHH
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGT 221 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~ 221 (523)
+.+.....|..++..|..++.+..+++++.+....+.=.
T Consensus 210 ~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 210 SILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 678888999999999999999888877666555444433
No 85
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=48.30 E-value=3.4e+02 Score=28.22 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=73.7
Q ss_pred HHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHHHH
Q psy5406 186 FLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVATV 265 (523)
Q Consensus 186 ~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~ 265 (523)
..+.+-..++--=.++|.+++++..+..- .-.+....++++.-+.+|.+... . ++....+..|.++-.-.|-...
T Consensus 53 iai~L~~MmYP~m~ki~~~~~~~v~k~~k-~L~lsL~~Nwii~P~lm~~la~~--f--l~~~pey~~GlILlglApC~aM 127 (342)
T COG0798 53 IAIGLILMMYPPMLKIDFEELKNVFKDPK-PLILSLFVNWIIGPLLMFALAWF--F--LPDEPEYRAGLILLGLAPCIAM 127 (342)
T ss_pred HHHHHHHHHhHHHhcCCHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHH--H--hCCCHHHHHHHHHHHhhhhHHH
Confidence 34444455555557888888777655421 12223344444444444433210 1 1222356666666665554433
Q ss_pred HHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5406 266 AIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYV 345 (523)
Q Consensus 266 ~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll~~~ 345 (523)
.+.= -+..+.=.+.-..--.+||...+++|.....+.-+......++...+.+++..+ ++=.+.|.+.++...|.
T Consensus 128 Vivw-~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl----~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 128 VIVW-SGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYL----GIPLIAGVLTRYILIKK 202 (342)
T ss_pred HHHH-HhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 3221 122222233334466899999999987665543221111122333333333333 34445556677666554
Q ss_pred c
Q psy5406 346 D 346 (523)
Q Consensus 346 ~ 346 (523)
+
T Consensus 203 k 203 (342)
T COG0798 203 K 203 (342)
T ss_pred c
Confidence 4
No 86
>KOG3826|consensus
Probab=47.80 E-value=49 Score=32.37 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=61.7
Q ss_pred HhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHH
Q psy5406 184 AFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVA 263 (523)
Q Consensus 184 ~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~ 263 (523)
....+.+-++.-+.|++++.|.+++....+..+.+....+.+-..+...++. .+.+|..+++.|.++.+..+..
T Consensus 158 ~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~------l~~~ii~~~l~g~v~~~i~~~~ 231 (252)
T KOG3826|consen 158 PLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFL------LAGPIIWAFLLGIVIGSILWRF 231 (252)
T ss_pred hhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHH------hccchHHHhccccceeeeecCC
Confidence 3455666788899999999999999999988888777777766666666664 6899999999999999887755
Q ss_pred HHH
Q psy5406 264 TVA 266 (523)
Q Consensus 264 v~~ 266 (523)
..+
T Consensus 232 ~r~ 234 (252)
T KOG3826|consen 232 PRP 234 (252)
T ss_pred ccc
Confidence 444
No 87
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=47.61 E-value=2.3e+02 Score=29.49 Aligned_cols=41 Identities=12% Similarity=-0.028 Sum_probs=34.1
Q ss_pred HhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHH
Q psy5406 184 AFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTIS 224 (523)
Q Consensus 184 ~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~ 224 (523)
.+...++..-++..|+++|++++|+..++.+.++....+.-
T Consensus 280 ~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l 320 (335)
T TIGR00698 280 PLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWL 320 (335)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHH
Confidence 45667778889999999999999999999888887766544
No 88
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=47.22 E-value=1e+02 Score=32.40 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=47.7
Q ss_pred hhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHH
Q psy5406 182 PTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAF 252 (523)
Q Consensus 182 ~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alll 252 (523)
..-|.+++.+.++--+=+.+|++.+-|.........+.|++.. ..+|...-.+ +|.++.+.+++
T Consensus 109 ~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~------~G~~~~d~~m~ 172 (438)
T COG3493 109 KSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLL------FGLSFQDTMMY 172 (438)
T ss_pred CCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHH------hCCChHHeeee
Confidence 4568899999999999999999999998887777666666554 4444444332 67888887664
No 89
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=45.66 E-value=3.5e+02 Score=27.69 Aligned_cols=97 Identities=10% Similarity=0.021 Sum_probs=60.4
Q ss_pred hHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----cccCCCHHHHHHHhccccCccHHHHH
Q psy5406 190 LPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLAD----VAYKLSFVESFAFGSLISAVDPVATV 265 (523)
Q Consensus 190 Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~----~~~~l~~~~alllGailsaTDPv~v~ 265 (523)
+...+|..|-++|.|.-.+..+....+...=+.+.+.+.-...+++|..+ ..+|++ .+.+=+.++-+....-.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS---~LAiiaA~~nsNggLY~ 127 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLS---TLALVAAMDMTNGGLYA 127 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccH---HHHHHHHHhCCcHHHHH
Confidence 44568999999999987777666555544444444333333344554322 123333 34444667788899999
Q ss_pred HHHhhCCCChhHHHHHhhhhhccchh
Q psy5406 266 AIFHALDVDPVLNMLVFGESILNDAI 291 (523)
Q Consensus 266 ~il~~~~~~~~l~~ll~gES~lND~~ 291 (523)
++..|+|-+++.... .-..+||+=
T Consensus 128 aL~~qyGd~~D~gA~--~i~sl~~GP 151 (314)
T TIGR00793 128 SIMQQYGTKEEAGAF--VLMSLESGP 151 (314)
T ss_pred HHHHHcCCHhhhhhh--hhhhhccCc
Confidence 999999877665542 244567763
No 90
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=43.78 E-value=88 Score=23.80 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHh
Q psy5406 120 AIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIIN 164 (523)
Q Consensus 120 ~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~ 164 (523)
.+..+.+++.++..+++-+-|-| +|.+...++.|.++.++.+
T Consensus 16 aFa~vG~~m~~S~~lS~~LT~Gr---ihGSAIAI~lGLvLAy~GG 57 (60)
T PF03818_consen 16 AFAVVGIIMWVSYWLSKKLTRGR---IHGSAIAIVLGLVLAYIGG 57 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHHHHcc
Confidence 45556677777777776665544 8999999999999987643
No 91
>PRK01658 holin-like protein; Validated
Probab=41.52 E-value=2.4e+02 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=32.7
Q ss_pred HhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 196 ESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 196 ~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
..|.--..+.+++++.+++...+.+++++..++|....++
T Consensus 74 ~VGi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l 113 (122)
T PRK01658 74 AVGVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLL 113 (122)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666789999999999999999999988888776553
No 92
>PRK01821 hypothetical protein; Provisional
Probab=41.35 E-value=2.5e+02 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=32.5
Q ss_pred HhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 196 ESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 196 ~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
..|.--..+.+++++.+++..-+.+++++.+++|....++
T Consensus 79 ~VGim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~l 118 (133)
T PRK01821 79 GVGVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHYV 118 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666789999999999999999999988888776554
No 93
>COG0679 Predicted permeases [General function prediction only]
Probab=39.46 E-value=3.1e+02 Score=27.90 Aligned_cols=138 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHH-HHHHHHHHHHHH
Q psy5406 153 VFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAII-GTTISAFVIGAG 231 (523)
Q Consensus 153 ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~-g~~i~~~~v~~~ 231 (523)
.+.+.++|.+....+-+-...+.+ .-+.+.....|..++..|.+++.+..++........+.. -.++.=++....
T Consensus 170 ~i~a~i~g~~~~~~~i~lP~~~~~----~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 170 LIIALILGLLLNLLGISLPAPLDT----AVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHH----HHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHh
Q psy5406 232 VYILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILG 301 (523)
Q Consensus 232 ~~~l~~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~ 301 (523)
.+.+| ..+.......+.+ +....+.+..+-++++.++++..-...-|.+--.+.+........
T Consensus 246 ~~~~~----l~~~~~~v~vl~~---a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l~ 308 (311)
T COG0679 246 AKLLG----LSGLALQVLVLLS---AMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILLLL 308 (311)
T ss_pred HHHcC----CChHHHHHHHHHh---hCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
No 94
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=38.65 E-value=3.3e+02 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.0
Q ss_pred ccCccHHHHHHHHhhCCCChhHHH
Q psy5406 256 ISAVDPVATVAIFHALDVDPVLNM 279 (523)
Q Consensus 256 lsaTDPv~v~~il~~~~~~~~l~~ 279 (523)
...|+|.-....++++|+|+++..
T Consensus 111 ~~TT~~~~l~~~l~~l~~P~~~~~ 134 (198)
T TIGR02454 111 ALTTPFPELLSALRRLGVPPLLVE 134 (198)
T ss_pred HHcCCHHHHHHHHHHcCCCHHHHH
Confidence 456899999999999999988765
No 95
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=37.03 E-value=2.1e+02 Score=30.10 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhcc-CchhHHHHHhHh
Q psy5406 379 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSL 457 (523)
Q Consensus 379 l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~-GlRG~valaLal 457 (523)
+.-..+|+-+|..++..+..-|+...+... ..=++-+.. ++.+..++.+...+++.+|..-++.- |--|..++.++.
T Consensus 135 i~P~LIF~GIGAMtDFgpLlanP~~~llGa-AAQ~GIF~t-~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15477 135 VAPLVIFMGVGAMTDFGPLLANPRTLLLGA-AAQFGIFAT-VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred hHHHHHHHhccHHhcchHHhhCHHHHHHHH-HHHhhHHHH-HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 344678899999986544444443222211 111111111 11222222222236788887666654 459999998887
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 458 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 458 ~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
.+..+ .-..+-...+.-.-+.-++| +|++|.+--+++++.+.
T Consensus 213 kLAP~--Llg~IaVAAYSYMaLVPiIQ----PpimklLTTkkER~I~M 254 (433)
T PRK15477 213 KLAPE--LLGAIAVAAYSYMALVPLIQ----PPIMKALTTEKERKIRM 254 (433)
T ss_pred hhhhH--hHHHHHHHHHHHHHHHhccc----chHHHhccCHHHhCccC
Confidence 54321 11111112222222333444 58888877666655544
No 96
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.93 E-value=2.1e+02 Score=30.08 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhcc-CchhHHHHHhHh
Q psy5406 379 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSL 457 (523)
Q Consensus 379 l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~-GlRG~valaLal 457 (523)
+.-..+|+-+|...+..+..-|+...+... ..=++-+.. ++.+..++.+...+++.+|..-++.- |--|..++.++.
T Consensus 135 i~P~LIF~GIGAMtDFgpLlanP~~~llGa-AAQ~GIF~t-~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15476 135 VAPLVIFMGVGAMTDFGPLLANPRTLLLGA-AAQFGIFAT-VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred hHHHHHHHhccHHhcchHHhhCHHHHHHHH-HHHhhHHHH-HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 344678899999986544444443222211 111111111 11222222222236788887666654 459999998887
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 458 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 458 ~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
.+..+ .-..+-...+.-.-+.-++| +|++|.+--+++++.+.
T Consensus 213 kLAP~--Llg~IaVAAYSYMaLVPiIQ----PpimklLTTkkER~I~M 254 (433)
T PRK15476 213 KLAPE--LLGAIAVAAYSYMALVPLIQ----PPIMKALTTEKERKIRM 254 (433)
T ss_pred hhhhH--hHHHHHHHHHHHHHHHhccc----chHHHhccCHHHhCccC
Confidence 54321 11111112222222333444 58888877666655544
No 97
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=36.67 E-value=2.2e+02 Score=30.01 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=58.1
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhcc-CchhHHHHHhHh
Q psy5406 379 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSL 457 (523)
Q Consensus 379 l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~-GlRG~valaLal 457 (523)
+.-..+|+-+|..++..+..-|+...+... ..=++-+.. ++.+..++.+...+++.+|..-++.- |--|..++.++.
T Consensus 135 i~P~LIF~GIGAMtDFgpLlanP~~~llGa-AAQ~GIF~t-~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss 212 (433)
T PRK15475 135 VAPLVIFMGVGAMTDFGPLLANPRTLLLGA-AAQFGIFAT-VLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG 212 (433)
T ss_pred hHHHHHHHhccHHhcchHHhhCHHHHHHHH-HHHhhHHHH-HHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence 344678899999986544444443222211 111111111 11222222222236788887666654 459999998887
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 458 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 458 ~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
.+..+ .-..+-...+.-.-+.-++ -+|++|.+--+++++.+.
T Consensus 213 kLAP~--Llg~IaVAAYSYMaLVPiI----QPpimklLTTkkER~I~M 254 (433)
T PRK15475 213 KLAPE--LLGAIAVAAYSYMALVPLI----QPPIMKALTTETERKIRM 254 (433)
T ss_pred hhhhH--hHHHHHHHHHHHHHHHhcc----cchHHHhccCHHHhCccC
Confidence 54321 1111111222222233344 458888877666655544
No 98
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=34.35 E-value=2.7e+02 Score=29.29 Aligned_cols=114 Identities=14% Similarity=0.021 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhcc-CchhHHHHHhHh
Q psy5406 379 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFS-GLRGAISYALSL 457 (523)
Q Consensus 379 l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~-GlRG~valaLal 457 (523)
+.-..+|+-+|..+|.....-++...+..-.+.=++-++.. +.+. -.+++.+|+.-++.- |.-|..++.++.
T Consensus 106 l~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~-~~A~------~lGF~~~eAAsIgIIGgADGPTaIf~s~ 178 (399)
T TIGR03136 106 LVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATL-VIGY------YCGLTPGEAAAVGTIGGADGPMVLFASL 178 (399)
T ss_pred cHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHH-HHHH------HcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence 55678899999998654444444332221111111111111 1111 125678877766654 459999998887
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 458 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 458 ~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
.+..+ .-..+-...+.-.-+.-++ -+|++|.+--++++..+.
T Consensus 179 kLAp~--Llg~IaVAAYsYMaLVPii----qPpimklLttkkER~I~M 220 (399)
T TIGR03136 179 ILAKD--LFVPISIIAYLYLSLTYAG----YPYLIKLLVPKKYRGLEV 220 (399)
T ss_pred hhhhH--hHHHHHHHHHHHHHHHhcc----cchHHHhhcCHHHHcccC
Confidence 54311 1111111122222233344 458888877666655544
No 99
>PRK03818 putative transporter; Validated
Probab=34.07 E-value=2.6e+02 Score=31.12 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCH------HHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHH
Q psy5406 121 IFFVLCVLALGILLIHFMLQFHFQYLPE------SIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPII 194 (523)
Q Consensus 121 i~~~~~~L~~~~~~~~~~~~~r~~~lP~------~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~Il 194 (523)
...+.+.+.++.+++..- .++..+|- ..+.+++|+++|..-.. ....|.-... .+..+-++.|.+-+
T Consensus 371 ~~~l~l~I~lg~llG~i~--~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~----~~~~~~~p~~-a~~~l~~~GL~lFl 443 (552)
T PRK03818 371 MLPVFIGIGLGVLLGSIP--FFIPGFPAALKLGLAGGPLIVALILGRIGSI----GKLYWFMPPS-ANLALRELGIVLFL 443 (552)
T ss_pred hHHHHHHHHHHHhhceee--EecCCCccceeeecchHHHHHHHHHHhccCC----CCceeecCHH-HHHHHHHHhHHHHH
Confidence 334444555565665432 22223333 55788888888864221 1001110000 02356667777777
Q ss_pred HHhhhcCCcHhH---HH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccHHHHHHH
Q psy5406 195 FESGYNLHKGNF---FQ-NIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDPVATVAI 267 (523)
Q Consensus 195 F~~G~~l~~~~~---~~-~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDPv~v~~i 267 (523)
...|++--..-+ ++ ++...+.+++..++++.++.....+++ +++++. ...|++..+ |+|.+.-+.
T Consensus 444 a~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~------~~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 444 AVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARML------AKMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCHH--HHHHHHhccCCCcHHHHHH
Confidence 777776654332 23 355666666767766655555554443 466654 677777766 555544333
No 100
>PRK09903 putative transporter YfdV; Provisional
Probab=33.21 E-value=5.3e+02 Score=26.12 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=28.6
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHH
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISA 225 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~ 225 (523)
+..+++++|.++|.+-.+.+.++...+++ .........+...
T Consensus 38 ~lv~~v~lPalif~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (314)
T PRK09903 38 KLVLNYALPAALFVSITRANREMIFADTR-LTLVSLVVIVGCF 79 (314)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHhhhh-HHHHHHHHHHHHH
Confidence 57889999999999999987766654443 3344444444443
No 101
>PRK09903 putative transporter YfdV; Provisional
Probab=32.68 E-value=4.6e+02 Score=26.56 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=21.8
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHh
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQN 209 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~ 209 (523)
+.+.....|.-+|..|..++...++.+
T Consensus 201 ~~lg~~~~PlaL~~iG~~L~~~~~~~~ 227 (314)
T PRK09903 201 NLIAKANSGVAVFAAGLTLAAHKFEFS 227 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 567788899999999999977666544
No 102
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=32.62 E-value=5.6e+02 Score=26.24 Aligned_cols=95 Identities=13% Similarity=-0.008 Sum_probs=50.6
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCcc
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFFQN--IGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVD 260 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~~~--~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTD 260 (523)
..+.......+-...|.+++.+.+.+- ++.........++...++.++..+-. .+++..+|++ |++=..
T Consensus 24 ~~~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~------~~~d~~TA~~-~~~PGg-- 94 (318)
T PF05145_consen 24 RRLRNAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRRI------SGLDRATAFF-ASMPGG-- 94 (318)
T ss_pred HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHH-HcCCcc--
Confidence 445556666666666777776655543 22233333333444444444444433 4677766654 554443
Q ss_pred HHHHHHHHhhCCCChhHHHHHhhhhh
Q psy5406 261 PVATVAIFHALDVDPVLNMLVFGESI 286 (523)
Q Consensus 261 Pv~v~~il~~~~~~~~l~~ll~gES~ 286 (523)
......+-+|.|.|.+.-.+...-=+
T Consensus 95 ~s~m~~la~~~gad~~~Va~~q~lRl 120 (318)
T PF05145_consen 95 LSEMVALAEEYGADTRRVALVQSLRL 120 (318)
T ss_pred HHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 33444445888888776555444433
No 103
>COG2985 Predicted permease [General function prediction only]
Probab=32.32 E-value=3.4e+02 Score=29.65 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=54.4
Q ss_pred hHHHhhHHHHHHhhhcCCc---HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC--HHHHHHHhccccCc
Q psy5406 185 FFLVLLPPIIFESGYNLHK---GNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLS--FVESFAFGSLISAV 259 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~---~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~--~~~alllGailsaT 259 (523)
-+++.|.+.++..|.+--. ..+||..+.-..++++-++.. ...++..+-+ +++| .....+=||+-+..
T Consensus 60 ~f~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~-~~~a~~l~k~------~~~~~~~~~Gm~sGAlTsTP 132 (544)
T COG2985 60 HFELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAA-LLLAWVLHKL------FGIDLGLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhh------cCCCHHHhhhhhcccccCCc
Confidence 3367777888888888874 466777777777776553332 3333322222 3444 44556677777777
Q ss_pred cHHHHHHHHhhCCCChh
Q psy5406 260 DPVATVAIFHALDVDPV 276 (523)
Q Consensus 260 DPv~v~~il~~~~~~~~ 276 (523)
.-+++..++++.+.+..
T Consensus 133 ~L~aa~~~L~~lg~~~~ 149 (544)
T COG2985 133 GLGAAQDILRELGAPSQ 149 (544)
T ss_pred hhHHHHHHHHhhccchh
Confidence 77788888998887754
No 104
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.10 E-value=5.9e+02 Score=26.32 Aligned_cols=246 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhcccccccccCCCCCC-----cchhHHhhcccccccccccCCeeEecCCCCCCCCCCCCCCCCCCCCC
Q psy5406 32 TLSFIAETCVFAYLGKNISISNTPILTS-----STKKELLEQLPDIANNVTLAPIVVILPNSTTENGNVSSTSAPEPVLP 106 (523)
Q Consensus 32 ~~~~~~e~~if~~lg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (523)
.+.....++++.-+|..+...+...... ++.++..++..+-+....+.......+++.+++++...+....+...
T Consensus 127 ~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (385)
T PF03547_consen 127 IIFDVVNNIILWSLGYFLLESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASA 206 (385)
T ss_pred hHHHHhhHHHHHHHHHHhhcccccccccccccccccccccccccCCccccCCcccccccccccccCCccccccccccccc
Q ss_pred CCCCchhhhchhHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHhhhh----cccccccccccccCh
Q psy5406 107 EKGSAEEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMS----NKNIANWHKEETFSP 182 (523)
Q Consensus 107 ~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~i~~~~~----~~~~~~~~~~~~~~~ 182 (523)
....+...+.....-.-.-..-..-.......+|.- ..+++...++|++++.+....+ ..-.. .-
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~--------~~ 275 (385)
T PF03547_consen 207 PSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSILKLF---KNPPLIAIILGLIIGLIPPLRPLFFPSFITD--------SL 275 (385)
T ss_pred chhhccCCcccccchhhhhhhhhHHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhcccchHhHHHH--------HH
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCc
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNFF---QNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAV 259 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~~---~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaT 259 (523)
+.+.....|..+|..|.++..+..+ +.........+=-.+.+.+..++...+ +++-...-.+=-..+..
T Consensus 276 ~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~--------~l~~~~~~~~~~~~~~P 347 (385)
T PF03547_consen 276 SYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLL--------GLDGDMARVLILQAAMP 347 (385)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH--------CCCHHHHHHHHHhccCC
Q ss_pred cHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHH
Q psy5406 260 DPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLT 296 (523)
Q Consensus 260 DPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf 296 (523)
-......+-++++.+++.......=+-+=-...+.++
T Consensus 348 ~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 348 TAINSFVIASLYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
No 105
>PRK10711 hypothetical protein; Provisional
Probab=29.75 E-value=5.5e+02 Score=25.21 Aligned_cols=41 Identities=12% Similarity=0.064 Sum_probs=28.5
Q ss_pred HHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 195 FESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYIL 235 (523)
Q Consensus 195 F~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l 235 (523)
|..=+.=+++.+||++++++.--..|.+++........+++
T Consensus 73 LAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~l 113 (231)
T PRK10711 73 LAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWM 113 (231)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556789999999998877888877655555555554
No 106
>COG2985 Predicted permease [General function prediction only]
Probab=28.86 E-value=1.1e+02 Score=33.38 Aligned_cols=102 Identities=17% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcH-hHH----HhHHHHHHHHHHHHH
Q psy5406 148 ESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKG-NFF----QNIGSILVFAIIGTT 222 (523)
Q Consensus 148 ~~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~-~~~----~~~~~il~la~~g~~ 222 (523)
..-+.+++|+++|.+... +. .-|.....-+ .-+-++ -+.+|.+|..++-. .|+ ...-++...+.+-++
T Consensus 397 ~aGGpLivaLiLG~ig~i---Gp-l~w~mP~~An-~~lrel--Gl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 397 NAGGPLIVALILGFIGAI---GP-LTWFMPPGAL-LALREL--GLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred ccccHHHHHHHHHHhccc---Cc-eEEEcChhHH-HHHHHH--HHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 345677788888865331 11 1121111000 112222 34566676666643 232 344567777777888
Q ss_pred HHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccC-ccHHHH
Q psy5406 223 ISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISA-VDPVAT 264 (523)
Q Consensus 223 i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsa-TDPv~v 264 (523)
++.+.++...+++ .+++| ..+.|++..+ |||.+.
T Consensus 470 vp~i~~~llg~~v------~kmn~--~~l~G~laGs~T~ppaL 504 (544)
T COG2985 470 VPVIIVFLLGRYV------LKMNW--LLLCGALAGSMTDPPAL 504 (544)
T ss_pred HHHHHHHHHHHHH------HhccH--HHHhhHHhcCCCChHHH
Confidence 8877777766665 45666 5677887776 888554
No 107
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=28.38 E-value=30 Score=36.08 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=10.0
Q ss_pred HHhhHHHHHHhhhcCCcHhH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHH
Q psy5406 187 LVLLPPIIFESGYNLHKGNF---FQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPV 262 (523)
Q Consensus 187 ~i~Lp~IlF~~G~~l~~~~~---~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv 262 (523)
.++.|......|.++|.+.+ .+.+.....+.+...+.-...+....+. .+.++.+++..|....+-..+
T Consensus 266 ~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 337 (380)
T PF00999_consen 266 GFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRL-------FGIPWKEALFIGLGMLPRGEV 337 (380)
T ss_dssp ----------------------------------------------------------------HHHHTTTTSS--HHH
T ss_pred HHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhh-------cccccchhHHHHHhhcCccHH
Confidence 77888888999999999888 4444444444444333333333222222 478999999999877755443
No 108
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=27.92 E-value=5.9e+02 Score=26.03 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=31.3
Q ss_pred cCCCcchhhhhhccCchhHHHHHhHhcccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCC
Q psy5406 432 HQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTS 498 (523)
Q Consensus 432 ~~i~~~~~~~~~~~GlRG~valaLal~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~ 498 (523)
.|++++....++-+----.++.+.|....-..+.++..++ +..+.++.++-. ...|.+.+.+++.
T Consensus 108 ~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~a-va~V~lfg~vam-~~~P~l~~~l~l~ 172 (305)
T PF03601_consen 108 FGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYA-VATVFLFGTVAM-FLYPLLGHALGLS 172 (305)
T ss_pred hCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeee-ehHHHHHHHHHH-HHHHHHHHHhCCC
Confidence 4678888888884333444444444422111122222233 233444443332 2344466777776
No 109
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=27.28 E-value=3e+02 Score=29.88 Aligned_cols=45 Identities=20% Similarity=0.403 Sum_probs=26.4
Q ss_pred HHHhccccCccHHHHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHH
Q psy5406 250 FAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSI 299 (523)
Q Consensus 250 lllGailsaTDPv~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~ 299 (523)
.++|++.+..-| -+++++|++|-+..--+ -+.+||..+.+.|.-+
T Consensus 398 ~~~A~l~G~~iP----~ll~kl~~DPAvaS~p~-iTTl~D~~g~~iyf~i 442 (451)
T COG2239 398 ILFAALVGVLIP----ILLKKLGLDPAVASGPL-ITTLTDITGLLIYFGI 442 (451)
T ss_pred HHHHHHhhchHH----HHHHHcCCCchhhccch-HHhhccchhHhhHHHH
Confidence 344444444444 35677888887755332 2457888887776544
No 110
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=27.08 E-value=6.7e+02 Score=25.37 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhccCchhHHHHHhHhccc
Q psy5406 381 KTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLE 460 (523)
Q Consensus 381 ~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~~GlRG~valaLal~~~ 460 (523)
.++--+.+|+.+.......++....+...+=++.-++.++.....+ +.+-..+...++..+.+-+..+..+|....
T Consensus 217 ~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~----~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~ 292 (321)
T TIGR00946 217 TPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLI----GLRGLELSVAILQAALPGGAVAAVLATEYE 292 (321)
T ss_pred HHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHh----CCChHHHHHHHHHHcCChhhHHHHHHHHhC
Confidence 3566678888775433222333322232222333333333332221 222244556666667778888888887554
Q ss_pred C
Q psy5406 461 F 461 (523)
Q Consensus 461 ~ 461 (523)
.
T Consensus 293 ~ 293 (321)
T TIGR00946 293 V 293 (321)
T ss_pred C
Confidence 3
No 111
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=26.74 E-value=7.4e+02 Score=25.73 Aligned_cols=119 Identities=17% Similarity=0.134 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhhhhc-cCchhHHHHHhHh
Q psy5406 379 YSKTLVFLITGLAIFSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWF-SGLRGAISYALSL 457 (523)
Q Consensus 379 l~~~~~Fv~lG~~~~~~~~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~~~~i~~~~~~~~~~-~GlRG~valaLal 457 (523)
+.-.++|+-+|..+|.....-++...+... ..=++-+.. ++.+..+....+...+.+|+.-++. +|.-|..++.++.
T Consensus 64 l~P~LIFlGIGAmtDFgpllanP~~~llGa-aAQ~GiF~t-~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~ 141 (354)
T TIGR01109 64 IAPLLIFMGIGALTDFGPLLANPRTLLLGA-AAQFGIFAT-VFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSG 141 (354)
T ss_pred hHHHHHHHhccHHhhhHHHHhChHHHHHHH-HHHhhHHHH-HHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhHh
Confidence 666788999999996544434443222111 111111111 1111111100012235667655554 4558888888887
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHhCCCCCccccc
Q psy5406 458 HLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGR 505 (523)
Q Consensus 458 ~~~~~~~~~~~i~~~~~~vVl~T~li~g~~~~pl~~~l~~~~~~~~~~ 505 (523)
.+..+ .-..+-...+.-.-+.-++ -+|++|.+--++++..+.
T Consensus 142 ~lap~--Llg~IaVAAYsYMaLvPii----qPpimklLttkkeR~I~M 183 (354)
T TIGR01109 142 KLAPE--LLAAIAVAAYSYMALVPII----QPPIMKALTSEKERKIRM 183 (354)
T ss_pred hhhhH--HHHHHHHHHHHHHHHHhcc----cchHHHhhcChHHhcccc
Confidence 43311 1111111112222233334 458888877666655544
No 112
>PF01769 MgtE: Divalent cation transporter; InterPro: IPR006667 This entry represents the integral membrane part of the eubacterial MgtE family of magnesium transporters. Related regions are found also in archaebacterial and eukaryotic proteins. All the archaebacterial and eukaryotic examples have two copies of the region. This suggests that the eubacterial examples may act as dimers.Proteins in this entry probably transport Mg2+ or other divalent cations into the cell. The alignment contains two highly conserved aspartates that may be involved in cation binding.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport; PDB: 2YVX_D 2ZY9_A.
Probab=26.48 E-value=2.1e+02 Score=25.09 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=38.9
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccccCCCHHHHHHHhccccCccHHHHHHHHhhCCCChhHHH
Q psy5406 204 GNFFQNIGSILVFAIIGTTISAFVIGAGVYILG----LADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNM 279 (523)
Q Consensus 204 ~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~----~~~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~~~~l~~ 279 (523)
+.++|+.......++.-.++.........+..+ .....+......++++..+++..=-....-++++.|.||....
T Consensus 36 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~k~g~DPd~~~ 115 (135)
T PF01769_consen 36 RVLLKELLAGLLNGLLLGLILGLIAFIIAYFWGGILSGLSISFAIIVALSIILSIILALLLGYLLPIILWKIGLDPDNAS 115 (135)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHT------T-TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--GGGS-
T ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHhH
Confidence 555566665555444444444444444444331 0111222222333333333333222223334667788776544
Q ss_pred HHhhhhhccchhHHHHH
Q psy5406 280 LVFGESILNDAIAIVLT 296 (523)
Q Consensus 280 ll~gES~lND~~aivlf 296 (523)
.= -.+.+.|.++..++
T Consensus 116 ~P-~iTtl~Di~g~~~l 131 (135)
T PF01769_consen 116 IP-LITTLGDILGTLIL 131 (135)
T ss_dssp ST-THHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHH
Confidence 22 24567788877766
No 113
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=24.50 E-value=2.4e+02 Score=29.39 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=46.8
Q ss_pred HhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHH
Q psy5406 184 AFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAF 252 (523)
Q Consensus 184 ~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alll 252 (523)
-|.+++...++--+=+.+|++-+.|.....+-..+.+++...+..+..-++ +|+++.+++++
T Consensus 25 ~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l-------~G~~~~~~~~~ 86 (347)
T TIGR00783 25 NFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTL-------FGLGFDHSLMY 86 (347)
T ss_pred ChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCHhHhhhe
Confidence 578888888888888999999999999887777777776654444443333 57888888775
No 114
>PRK11660 putative transporter; Provisional
Probab=23.75 E-value=1e+03 Score=26.41 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=49.2
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------ccccCCCHHHHHHHhccccCccHHHHHHHHhhCCC
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLA------DVAYKLSFVESFAFGSLISAVDPVATVAIFHALDV 273 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~------~~~~~l~~~~alllGailsaTDPv~v~~il~~~~~ 273 (523)
+.|+..+.+.....+.+++++.+-+....-..-...+.- -...|+....+-++|+.-+..+..-+ ++-.+.|.
T Consensus 272 ~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srS-a~n~~aGa 350 (568)
T PRK11660 272 TLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARS-AANVRAGA 350 (568)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHH-HHHHhcCC
Confidence 467778887787777777777655432221111111100 01235556667788887776654444 44456788
Q ss_pred ChhHHHHHhhhh
Q psy5406 274 DPVLNMLVFGES 285 (523)
Q Consensus 274 ~~~l~~ll~gES 285 (523)
+.++..++.+--
T Consensus 351 rT~la~iv~a~~ 362 (568)
T PRK11660 351 TSPISAVIHALL 362 (568)
T ss_pred CcHHHHHHHHHH
Confidence 888888766543
No 115
>KOG1650|consensus
Probab=22.97 E-value=6.2e+02 Score=29.54 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=66.7
Q ss_pred HhHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccccCccHHH
Q psy5406 184 AFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLISAVDPVA 263 (523)
Q Consensus 184 ~~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGailsaTDPv~ 263 (523)
....+++|+-.-..|++.|...+++ +...............+.+.....+ +++|+.+++.+|.+++.-.-+.
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~-------~k~p~~~~l~l~~lm~~kgl~e 381 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLY-------CKLPLRDSLALGLLMSTKGLVE 381 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHhhhHHH
Confidence 3456899999999999999999998 4333332222222222222222222 5899999999999998766554
Q ss_pred HHHHHh--hC-CCChhHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 264 TVAIFH--AL-DVDPVLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 264 v~~il~--~~-~~~~~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
..-.-. +. ..+.+-..+..--+++|-++.-.+.....
T Consensus 382 l~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 382 LIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred HHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 443222 22 34666666666666666665555544443
No 116
>PF15179 Myc_target_1: Myc target protein 1
Probab=21.92 E-value=1.4e+02 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 315 TGFNHFCLMFFASAGIGVLFALISALL 341 (523)
Q Consensus 315 ~~l~~fl~~~~gsi~iG~~~G~~~~~l 341 (523)
..+..|...++.|+++|.++-.++.++
T Consensus 20 ~lIlaF~vSm~iGLviG~li~~Lltwl 46 (197)
T PF15179_consen 20 DLILAFCVSMAIGLVIGALIWALLTWL 46 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556555555555554444444443
No 117
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=21.07 E-value=2.8e+02 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q psy5406 124 VLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGM 161 (523)
Q Consensus 124 ~~~~L~~~~~~~~~~~~~r~~~lP~~~~~ll~GillG~ 161 (523)
+++-+++|+.++..+-++--....-.+.++++|+++|.
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 45566777788888866521122345667777777775
No 118
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.35 E-value=4.8e+02 Score=24.79 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q psy5406 144 QYLPESIAIVFLGALIGMIIN 164 (523)
Q Consensus 144 ~~lP~~~~~ll~GillG~i~~ 164 (523)
.++-...++-+.|+++|.+++
T Consensus 137 ~~~~rA~~~~~~~L~~G~~lG 157 (194)
T PF11833_consen 137 RKLGRAFLWTLGGLVVGLILG 157 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 557777777777777776544
No 119
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=20.11 E-value=5.3e+02 Score=25.70 Aligned_cols=21 Identities=19% Similarity=0.502 Sum_probs=17.1
Q ss_pred CCCHHHHHHHhccccCccHHH
Q psy5406 243 KLSFVESFAFGSLISAVDPVA 263 (523)
Q Consensus 243 ~l~~~~alllGailsaTDPv~ 263 (523)
.+-...++.+|++++|+||..
T Consensus 198 r~~iv~~fViaaviTPpd~~s 218 (255)
T COG0805 198 RYAIVAAFVIAAIITPPDVLS 218 (255)
T ss_pred CeeeehHHHHHHHcCCCchHH
Confidence 455677899999999999843
Done!