Query psy5406
Match_columns 523
No_of_seqs 292 out of 1667
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 16:41:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 98.8 6.2E-09 2.1E-13 107.3 9.3 242 183-460 61-350 (388)
2 2l0e_A Sodium/hydrogen exchang 98.3 2.8E-08 9.4E-13 65.0 -1.5 31 245-275 2-32 (33)
3 2htg_A NHE-1, NHE1 isoform of 98.2 1.2E-07 4.1E-12 59.0 -1.0 26 272-297 1-26 (28)
4 2kbv_A Sodium/hydrogen exchang 97.2 8.7E-05 3E-09 46.2 1.0 24 437-460 2-25 (28)
5 3zux_A Transporter, ASBTNM; tr 97.1 0.22 7.6E-06 50.1 25.3 145 185-343 44-190 (332)
6 1y4e_A Sodium/hydrogen exchang 96.0 0.00048 1.7E-08 42.4 -1.6 25 180-204 2-26 (27)
7 2k3c_A TMIX peptide; membrane 93.6 0.01 3.4E-07 38.6 -0.4 15 1-15 19-33 (33)
8 2zy9_A Mg2+ transporter MGTE; 57.9 42 0.0015 34.9 10.1 94 200-300 369-466 (473)
9 2oar_A Large-conductance mecha 10.8 1.2E+02 0.0042 27.0 2.3 71 149-235 36-112 (174)
10 3vou_A ION transport 2 domain 9.8 4.5E+02 0.015 22.0 5.7 31 221-256 33-63 (148)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=98.83 E-value=6.2e-09 Score=107.27 Aligned_cols=242 Identities=13% Similarity=0.130 Sum_probs=157.6
Q ss_pred hHhHHHhhHHHHHHhhhcCCcHhH----HHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccc
Q psy5406 183 TAFFLVLLPPIIFESGYNLHKGNF----FQNIG--SILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLI 256 (523)
Q Consensus 183 ~~~~~i~Lp~IlF~~G~~l~~~~~----~~~~~--~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGail 256 (523)
+..-+-.+.+.+|..|+|+|++.+ ++..+ .....|+.|+++++++ |.. ++....++.--+++.
T Consensus 61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~------~~~~~~~~~~gw~ip 129 (388)
T 1zcd_A 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLA------FNYADPITREGWAIP 129 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGG------GCCSSTTHHHHTSSS
T ss_pred HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHH------HhcCChhhhhhhHHH
Confidence 345567788899999999988766 44444 3577788899998665 332 456666688889999
Q ss_pred cCccHHHHHHHHhhC--CCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 257 SAVDPVATVAIFHAL--DVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLF 334 (523)
Q Consensus 257 saTDPv~v~~il~~~--~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~ 334 (523)
.+||-+.++.++..+ ..|..++..+.+-++.||..++++..++.+ ++ .+.. ... . .++
T Consensus 130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~-~~~~---~l~----~------~~~--- 189 (388)
T 1zcd_A 130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---ND-LSMA---SLG----V------AAV--- 189 (388)
T ss_dssp SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CC-CCHH---HHH----H------HHH---
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CC-ccHH---HHH----H------HHH---
Confidence 999999999999986 468999999999999999999999999864 11 1111 110 0 011
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHhhcccchh---------------------------------hhHH
Q psy5406 335 ALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSAR---------------------------------TYSK 381 (523)
Q Consensus 335 G~~~~~ll~~~~~~~~~~~~~~l~l~~~~l~y~lae~lg~SGi---------------------------------~l~~ 381 (523)
.....+++++.+.++ ....+.+ ....++.+|..|.+.. .+.-
T Consensus 190 ~~~~~~~l~r~~v~~---~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~il 264 (388)
T 1zcd_A 190 AIAVLAVLNLCGARR---TGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLIL 264 (388)
T ss_dssp HHHHHHHHHHTTCCC---THHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcchh---HHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 111123334433222 2222222 2355666676666655 1456
Q ss_pred HHH-HHHHhhhhhccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----ccCCCcchhhhhhc-cCchhHHHHH
Q psy5406 382 TLV-FLITGLAIFSFR-HRVEPALVIWSLILCLVGRACNIFPLAILVNRFR----EHQITRRMMFIMWF-SGLRGAISYA 454 (523)
Q Consensus 382 ~~~-Fv~lG~~~~~~~-~~~~~~~v~~~~~~~~l~R~~~v~~~~~~~~~~~----~~~i~~~~~~~~~~-~GlRG~vala 454 (523)
+++ |...|+.++... ...+........+..+++|+++++..+++..|.+ +.+.+|++..-+++ +|.||.+++.
T Consensus 265 PlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~ 344 (388)
T 1zcd_A 265 PLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIF 344 (388)
T ss_dssp HHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHH
T ss_pred HHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHH
Confidence 677 999999985321 1111111122334558999999888888765442 34788988876554 4669999999
Q ss_pred hHhccc
Q psy5406 455 LSLHLE 460 (523)
Q Consensus 455 Lal~~~ 460 (523)
.+...-
T Consensus 345 Ia~laf 350 (388)
T 1zcd_A 345 IASLAF 350 (388)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 776543
No 2
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=98.34 E-value=2.8e-08 Score=65.01 Aligned_cols=31 Identities=42% Similarity=0.692 Sum_probs=28.2
Q ss_pred CHHHHHHHhccccCccHHHHHHHHhhCCCCh
Q psy5406 245 SFVESFAFGSLISAVDPVATVAIFHALDVDP 275 (523)
Q Consensus 245 ~~~~alllGailsaTDPv~v~~il~~~~~~~ 275 (523)
+|..|++|||++|+|||++++++++++++|+
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~ 32 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK 32 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence 4567899999999999999999999999885
No 3
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=98.19 E-value=1.2e-07 Score=58.99 Aligned_cols=26 Identities=50% Similarity=0.917 Sum_probs=24.2
Q ss_pred CCChhHHHHHhhhhhccchhHHHHHH
Q psy5406 272 DVDPVLNMLVFGESILNDAIAIVLTT 297 (523)
Q Consensus 272 ~~~~~l~~ll~gES~lND~~aivlf~ 297 (523)
++|++++.+++|||++||++++++|.
T Consensus 1 ~V~~~L~~lvfGESllNDavaiVlf~ 26 (28)
T 2htg_A 1 HINELLHILVFGESLLNDAVTVVLYK 26 (28)
T ss_dssp CCSSTTHHHHTTTTTTTTTTTTTTTT
T ss_pred CCCceEEEEEEeeeeecccEEEEEEe
Confidence 57999999999999999999999885
No 4
>2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic}
Probab=97.20 E-value=8.7e-05 Score=46.25 Aligned_cols=24 Identities=42% Similarity=0.818 Sum_probs=21.5
Q ss_pred chhhhhhccCchhHHHHHhHhccc
Q psy5406 437 RMMFIMWFSGLRGAISYALSLHLE 460 (523)
Q Consensus 437 ~~~~~~~~~GlRG~valaLal~~~ 460 (523)
++|.+++|+|+||++++++++..+
T Consensus 2 ~~Q~i~~~~GLRGAvafaL~~~l~ 25 (28)
T 2kbv_A 2 KDQFIIAYGGLRGAIAFSLGYLLD 25 (28)
T ss_dssp CHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred CceeEEEeecchHHHHHHHHHhcc
Confidence 589999999999999999998654
No 5
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.06 E-value=0.22 Score=50.08 Aligned_cols=145 Identities=14% Similarity=0.085 Sum_probs=68.4
Q ss_pred hHHHhhHHHHHHhhhcCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCH--HHHHHHhccccCccHH
Q psy5406 185 FFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSF--VESFAFGSLISAVDPV 262 (523)
Q Consensus 185 ~~~i~Lp~IlF~~G~~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~l~~--~~alllGailsaTDPv 262 (523)
.....+..++|..|.+++.+++++..+..-... .+.+..+++.-+..+.++. .++.+. ..++++=++.-+++-+
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~-~~l~~~~vi~Pll~~~l~~---~~~l~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVI-IGVIAQFAIMPATAWCLSK---LLNLPAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHH---HhCCChHHHHHHHHHhcCCchhHH
Confidence 445678899999999999999996544322111 2233333333333333321 123332 3333333333333333
Q ss_pred HHHHHHhhCCCChhHHHHHhhhhhccchhHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5406 263 ATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLL 342 (523)
Q Consensus 263 ~v~~il~~~~~~~~l~~ll~gES~lND~~aivlf~~~~~~~~~~~~~~~~~~~~l~~fl~~~~gsi~iG~~~G~~~~~ll 342 (523)
.+ .-+..|-+..+.. ....+|+.++++..=....+..++ ....+......+.+.. +++=++.|.+.+++.
T Consensus 120 ~v--~t~~a~Gd~~la~---~~~~~stll~~~~~Pl~~~l~~g~-~~~v~~~~~~~~l~~~----vllP~~lG~l~r~~~ 189 (332)
T 3zux_A 120 NV--MTYLARGNVALSV---AVTSVSTLTSPLLTPAIFLMLAGE-MLEIQAAGMLMSIVKM----VLLPIVLGLIVHKVL 189 (332)
T ss_dssp HH--HHHHTTCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHH----THHHHHHHHHHHHHH
T ss_pred HH--HHHHhCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHcCC-ccCCCHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 32 2233455555444 345556666666554444433221 1122233333344333 344445555555544
Q ss_pred H
Q psy5406 343 K 343 (523)
Q Consensus 343 ~ 343 (523)
+
T Consensus 190 ~ 190 (332)
T 3zux_A 190 G 190 (332)
T ss_dssp G
T ss_pred H
Confidence 3
No 6
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=96.02 E-value=0.00048 Score=42.39 Aligned_cols=25 Identities=48% Similarity=0.918 Sum_probs=22.6
Q ss_pred cChhHhHHHhhHHHHHHhhhcCCcH
Q psy5406 180 FSPTAFFLVLLPPIIFESGYNLHKG 204 (523)
Q Consensus 180 ~~~~~~~~i~Lp~IlF~~G~~l~~~ 204 (523)
+++++|+...||+|+|++||+++.|
T Consensus 2 ~~~~~FF~~LLPPII~~aGy~l~~r 26 (27)
T 1y4e_A 2 LQSDVFFLFLLPPIILDAGYFLPLR 26 (27)
T ss_dssp CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred CccceeeeeccCccEeeccccccCC
Confidence 5788999999999999999999765
No 7
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=93.61 E-value=0.01 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.1
Q ss_pred CcchhhHHhhhhccc
Q psy5406 1 MAILFNGIVMSHYTH 15 (523)
Q Consensus 1 ~a~~~~g~~~~~y~~ 15 (523)
+|++|||++|+||++
T Consensus 19 lavv~~Gi~~~~y~~ 33 (33)
T 2k3c_A 19 MALIASGVVMRPKKX 33 (33)
T ss_dssp TTTTTTTSCCCCCC-
T ss_pred HHHHHHHHHHhhccC
Confidence 589999999999974
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=57.86 E-value=42 Score=34.89 Aligned_cols=94 Identities=20% Similarity=0.265 Sum_probs=44.8
Q ss_pred cCCcHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC----CCHHHHHHHhccccCccHHHHHHHHhhCCCCh
Q psy5406 200 NLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYK----LSFVESFAFGSLISAVDPVATVAIFHALDVDP 275 (523)
Q Consensus 200 ~l~~~~~~~~~~~il~la~~g~~i~~~~v~~~~~~l~~~~~~~~----l~~~~alllGailsaTDPv~v~~il~~~~~~~ 275 (523)
+++.++.++..+.=+..++.-.++.+++.+...|++. +...+ .+....++++++++..=| -+++++|.+|
T Consensus 369 ~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~v~~a~~~~~~~a~~~g~~~p----~~~~~~~~DP 442 (473)
T 2zy9_A 369 DLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDG--HPLLLPVVGVSLVLIVFFANLVGAMLP----FLLRRLGVDP 442 (473)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTSHHHHHHHHHHHHHHHHHHHTTHH----HHHHHHTCCG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCc
Confidence 4666655555444444443333333455555555442 11111 112222233333333222 3567788887
Q ss_pred hHHHHHhhhhhccchhHHHHHHHHH
Q psy5406 276 VLNMLVFGESILNDAIAIVLTTSIL 300 (523)
Q Consensus 276 ~l~~ll~gES~lND~~aivlf~~~~ 300 (523)
.....-+ -+.++|.+++++|..+.
T Consensus 443 a~~s~p~-itt~~D~~g~~~~~~~a 466 (473)
T 2zy9_A 443 ALVSNPL-VATLSDVTGLLIYLSVA 466 (473)
T ss_dssp GGSCHHH-HHHHHHHHHHHHHHHHH
T ss_pred cccccch-HHHHHHHHHHHHHHHHH
Confidence 7654332 35578888877765443
No 9
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=10.85 E-value=1.2e+02 Score=26.96 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccccccChhHhHHHhhHHHHHHhhhcCCcHhHHHhH-----H-HHHHHHHHHHH
Q psy5406 149 SIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNI-----G-SILVFAIIGTT 222 (523)
Q Consensus 149 ~~~~ll~GillG~i~~~~~~~~~~~~~~~~~~~~~~~~~i~Lp~IlF~~G~~l~~~~~~~~~-----~-~il~la~~g~~ 222 (523)
-+.-+.+|+++|..+.-+ -..+.-++..|+|-..+|.+ ...++-.. . .+-.=.++..+
T Consensus 36 NViDLAVgVIIGaAF~~I--------------VtSlV~dIImPlIgl~Gg~d--fs~l~~~l~~~~~~~~i~yG~Fi~av 99 (174)
T 2oar_A 36 NIVDLAVAVVIGTAFTAL--------------VTKFTDSIITPLINRIGVNA--QSDVGILRIGIGGGQTIDLNVLLSAA 99 (174)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHCCCC--EEECCCCTTTCCSCEEECHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHhhCCCC--cccceEEEecCCCceeeeHHHHHHHH
Confidence 456777888888644321 11234456667665445543 32221111 0 11222467788
Q ss_pred HHHHHHHHHHHHH
Q psy5406 223 ISAFVIGAGVYIL 235 (523)
Q Consensus 223 i~~~~v~~~~~~l 235 (523)
++++++++.+|++
T Consensus 100 InFlIIA~vIYFl 112 (174)
T 2oar_A 100 INFFLIAFAVYFL 112 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888765
No 10
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=9.78 E-value=4.5e+02 Score=22.00 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccCCCHHHHHHHhccc
Q psy5406 221 TTISAFVIGAGVYILGLADVAYKLSFVESFAFGSLI 256 (523)
Q Consensus 221 ~~i~~~~v~~~~~~l~~~~~~~~l~~~~alllGail 256 (523)
.++..++.|...|.. .-++++.+|+-+..+-
T Consensus 33 ~~~~~~~~g~~~~~~-----~e~~~~~~a~y~~~~t 63 (148)
T 3vou_A 33 LTFLTLTSGTIFYST-----VEGLRPLDALYFSVVT 63 (148)
T ss_dssp HHHHHHHHHHHHHHH-----TSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHH
Confidence 333344555555543 3578999998887553
Done!