RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5406
(523 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 223 bits (570), Expect = 3e-66
Identities = 120/402 (29%), Positives = 207/402 (51%), Gaps = 51/402 (12%)
Query: 146 LPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGN 205
+PES+ ++ G L+G II + + T + FFL LLPPI+ ++GY + + N
Sbjct: 35 VPESVLLIVYGLLVGGIIKASPHIDPP------TLDSSYFFLYLLPPIVLDAGYFMPQRN 88
Query: 206 FFQNIGSILVFAIIGTTISAFVIGAGVY----ILGLADVAYKLSFVESFAFGSLISAVDP 261
FF+N+GSIL+FA++GT I+AFVIG +Y I G + + +++ FGSLISAVDP
Sbjct: 89 FFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSI--DIGLLDNLLFGSLISAVDP 146
Query: 262 VATVAIFHALDVDPVLNMLVFGESILNDAIAIVL--TTSILGSDNPNMTTWEAVLTGFNH 319
VA +A+F V+ L +++FGES+LNDA+ +VL T T V G
Sbjct: 147 VAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCAS 206
Query: 320 FCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYAPYALAEGIHLSA--- 376
F ++ +GV+F + A + ++ + +E + + +Y Y AE +HLS
Sbjct: 207 FFVVTCGGLLVGVVFGFLVAFITRFTHHIR--QIEPLFVFLISYLSYLFAETLHLSGILA 264
Query: 377 --------RTY-----------------------SKTLVFLITGLAIFSFRHRVEPALVI 405
+ Y S+TL+F+ G+++ + H A V+
Sbjct: 265 LIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVV 324
Query: 406 WSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHL-EFSDE 464
+L C++ R + L+ + N FR +I + +++++GLRGA+++AL+L L E
Sbjct: 325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYAGLRGAVAFALALLLDEKIFP 384
Query: 465 TRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIGRR 506
+ + +T+TL++V T + GG+ PL+++L+ +
Sbjct: 385 YKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLKVKKGCISKTK 426
Score = 50.5 bits (121), Expect = 2e-06
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 1 MAILFNGIVMSHYTHYNLSTVTQITMQQTMRTLSFIAETCVFAYLG 46
+A++F GI M Y N+S +Q T++ M+ LS ++ET +F +LG
Sbjct: 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLG 308
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 138 bits (349), Expect = 7e-36
Identities = 102/441 (23%), Positives = 173/441 (39%), Gaps = 61/441 (13%)
Query: 117 SSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHK 176
S + +F +L +L LG+L+ + LPE ++ LG L G +
Sbjct: 4 SLMLLFLLLLILLLGLLVSVLAGRLL---LPEIPLLLLLGLLGGPPG-------LNLISP 53
Query: 177 EETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILG 236
+ P F ++ L ++F G L + SILV A+ I+A IG + L
Sbjct: 54 DLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWL- 112
Query: 237 LADVAYKLSFVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLT 296
+ +F G+++S DPVA IF + V + ++ GES+LND + IVL
Sbjct: 113 ----LPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLF 168
Query: 297 TSILGS--DNPNMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRK--NPS 352
L + + A+L +G+L + LL+ +D R +P
Sbjct: 169 KVALAALLGTGAFSLGWALLLFLIE----ALGGILLGLLLGYLLGRLLRRLDRRGWTSPL 224
Query: 353 LEFGLMLVFTYAPYALAEGIHLS------------------------ARTY--------- 379
LE L L+ +A Y LAE + +S AR
Sbjct: 225 LETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLD 284
Query: 380 --SKTLVFLITGLAI-FSFRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITR 436
L+F++ G + S + ++ +L+ L+ R +F N +
Sbjct: 285 FLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPW 344
Query: 437 RMMFIMWFSGLRGAIS--YALSLHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKI 494
R + ++G RG +S AL + LE R +I+ +++L + LV G + PL K
Sbjct: 345 RERLFLSWAGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKK 404
Query: 495 LQTSSNQKIGRRRRGRKGKTA 515
L+ S + + G + A
Sbjct: 405 LEVSEESALAKEILGARRAQA 425
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 101 bits (253), Expect = 2e-23
Identities = 96/391 (24%), Positives = 160/391 (40%), Gaps = 59/391 (15%)
Query: 127 VLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFF 186
+ L +L + L LP + ++ G L+G + E
Sbjct: 1 AVLLLLLALLAGLLARRLGLPPVVGLILAGILLG--------PSGLGLV-EPDLDLEVLA 51
Query: 187 LVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSF 246
+ LP ++F +G L +N SIL+ A++G I F++G + +LG +
Sbjct: 52 ELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIP-FLLGLLLALLGG----LGIPL 106
Query: 247 VESFAFGSLISAVDPVATVAIF-HALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNP 305
+E+ FG+ +SA PV +AI ++ L L+ GES+LNDA+A+VL +L
Sbjct: 107 LEALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLALAGV 166
Query: 306 NMTTWEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVD--LRKNPSLEFGLMLVFTY 363
+ +L L+F A G+L L+ LL+ + + LE L+L
Sbjct: 167 GGLSDLGLL------LLIFLVVALGGLLLGLVFGWLLRLITRFTSGDRELEVLLVLALAL 220
Query: 364 APYALAEGIHLSA-------------RTYSK---------------TLVFLITGLAI-FS 394
LAE + LS ++ L F+ GL++ S
Sbjct: 221 LAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLEPFGYGLFLPLFFVSVGLSLDLS 280
Query: 395 FRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGL-RGAISY 453
LV+ L+ L+G+ +F LA L+ ++ R I+ F GL RGA+S
Sbjct: 281 SLLLSLLLLVLLLLVAILLGKLLGVFLLARLLG------LSLREALIVGFGGLQRGAVSL 334
Query: 454 ALSLHLEFSDETRHVIITSTLIIVLVTTLVF 484
AL+ + T + +VL+TTL+
Sbjct: 335 ALAAIGLQLGLIDRELYTLLVAVVLLTTLLK 365
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 82.2 bits (203), Expect = 1e-16
Identities = 90/426 (21%), Positives = 159/426 (37%), Gaps = 85/426 (19%)
Query: 127 VLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHKEETFSPTAFF 186
++ L +L + F LP IA++ G L+G+ L E
Sbjct: 3 IIELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP----------EVPLDREIVL 52
Query: 187 LVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVY-ILGLADVAYKLS 245
+ LPP++FE+ N +N I + A + ++ V+G + ILG+
Sbjct: 53 FLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILGIPLAL---- 108
Query: 246 FVESFAFGSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTSILGSDNP 305
+ G+++S D VA + F ++ L++L+ GES+LND A+V+ +
Sbjct: 109 ---ALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVFAIAVAVALG 165
Query: 306 NMTTWEAVLTGFNHFCLMFFASAGIGVLFA-LISALLLKYVDLRKNPSLEFGLMLVFTYA 364
F ++ G+ L LL +D +P +E L ++ +A
Sbjct: 166 KGVFDPLNAAL--DFAVVCVGGIAAGLAVGYLAYRLLRAKID---DPLVEIALTILAPFA 220
Query: 365 PYALAEGIHLS----------------------------ARTYSKTLVFLITGL------ 390
+ LAE H S A + +VFL+ G+
Sbjct: 221 GFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIG 280
Query: 391 -----AIFSFRHRVE--PALVIWSLILCLVGRACNI------FPLAILVNRF---REHQI 434
IFS + PA VI +L + + + NRF + +
Sbjct: 281 VQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEF 340
Query: 435 TRRMMFIMWFSGLRGAISYALSLHL--------EFSDETRHVIITSTLIIVLVTTLVFGG 486
R ++ ++GLRGAI AL+L F R+ ++ ++L + LV G
Sbjct: 341 GTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFPA--RYELVFLAAGVILFSLLV-QG 397
Query: 487 STMPLM 492
++P+
Sbjct: 398 ISLPIF 403
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 60.9 bits (148), Expect = 7e-10
Identities = 74/351 (21%), Positives = 135/351 (38%), Gaps = 63/351 (17%)
Query: 193 IIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVYILGLADVAYKLSFVESFAF 252
I+F+ G+ +F G L A +G I++ + G L L ++E
Sbjct: 71 ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYL------LNLDWLEGLLI 124
Query: 253 GSLISAVDPVATVAIFHALDVDPVLNMLVFGESILNDAIAIVLTTS---ILGSDNPNMTT 309
G+++ + D A ++ +++ + + ES ND +A+ LT + ++ N++
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSNDPMAVFLTITLIELIAGGETNLSW 184
Query: 310 WEAVLTGFNHFCLMFFASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYA----P 365
F L F G+G+L L LL + R N L+ GL + A
Sbjct: 185 ---------GFLLGFLQQFGLGLLLGLGGGKLLLQLINRIN--LDSGLYPILALAGGLLI 233
Query: 366 YALAEGIHLSA--------------RTYSKT---------------LVFLITGLAIF--S 394
++L I S ++ L+FL+ GL +
Sbjct: 234 FSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQ 293
Query: 395 FRHRVEPALVIWSLILCLVGRACNIFPLAILVNRFREHQITRRMMFIMWFSGLRGAISYA 454
PA+++ SL + V R +F + + FR ++ R +F+ W GLRGA+
Sbjct: 294 LLPIAIPAILL-SLWMIFVARPLAVF---LGLIPFRFNR--REKLFVSW-VGLRGAVPII 346
Query: 455 LS-LHLEFSDETRHVIITSTLIIVLVTTLVFGGSTMPLMKILQTSSNQKIG 504
L+ + E + +VLV+ L+ G + K L+ + G
Sbjct: 347 LAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAKKLKVIVPPRGG 397
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 55.6 bits (135), Expect = 4e-08
Identities = 74/330 (22%), Positives = 124/330 (37%), Gaps = 85/330 (25%)
Query: 214 LVFAIIGTTISAFVIGAGV-YILGLADVAYKLSFVESFAFGSLISAVDPVATVAIFHALD 272
L A +G I+A + G ++LGL ++E G+++ + D A ++
Sbjct: 91 LSLATLGVLITAGLTGLFAHWLLGL-------DWLEGLLLGAIVGSTDAAAVFSLLRGKG 143
Query: 273 ------VDPVLNMLVFGESILNDAIAIVLTTSILG--SDNPNMTTWEAVLTGFNHFCLMF 324
V L + ES ND +A+ LT +++ + +W +L F F
Sbjct: 144 LNLKERVASTLEI----ESGSNDPMAVFLTITLIELITGGETGLSWGFLL----LFLQQF 195
Query: 325 FASAGIGVLFALISALLLKYVDLRKNPSLEFGLMLVFTYA----PYALAEGIHLS----- 375
A IG+L + LL + L GL + A +AL + S
Sbjct: 196 GLGALIGLLGGWLLVQLLNRIALP-----AEGLYPILVLAGALLIFALTAALGGSGFLAV 250
Query: 376 ---------ARTYSKT---------------LVFLITGLAIF--SFRHRVEPALVIWSLI 409
+ +FL+ GL + PAL++ +L
Sbjct: 251 YLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLL-ALF 309
Query: 410 LCLVGRACNIFPLA--ILVNRFREHQITRRMMFIMWFSGLRGAIS-----YALSLHLEFS 462
L LV R PLA + + FR + R +FI W GLRGA+ + + L +
Sbjct: 310 LILVAR-----PLAVFLSLLPFRFN--LREKLFISW-VGLRGAVPIVLATFPMMAGLPNA 361
Query: 463 DETRHVIITSTLIIVLVTTLVFGGSTMPLM 492
+V+ +VLV+ L+ G+T+P
Sbjct: 362 QLIFNVV----FFVVLVSLLL-QGTTLPWA 386
>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 381
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 174 WHKEETFSPTAF-----FLVLLPPIIFESGYNLHK-GNFFQNIGSI 213
WHK +T SPT F + I F G N + +F+++G+
Sbjct: 125 WHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAA 170
>gnl|CDD|181459 PRK08533, PRK08533, flagellar accessory protein FlaH; Reviewed.
Length = 230
Score = 30.0 bits (68), Expect = 2.3
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 423 AILVNRFREHQITRRMMFIMWFSGLRGAISYALSLHLEFSDETRHVIITSTLIIVLVTTL 482
+++ N E + M F S L I + E + ++ T+ +++ +
Sbjct: 128 SLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK-ELDESVLTILRTAATMLIRLEVK 186
Query: 483 VFGGSTMPLMKILQ 496
VFGG KI++
Sbjct: 187 VFGGDLKNSAKIVK 200
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 29.7 bits (67), Expect = 4.6
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 27/143 (18%)
Query: 112 EEERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIA----------IVFLGALIGM 161
E+N S + +L L L I +FM+ + +P I + L L+
Sbjct: 64 IREKNISKVYWLLL--LGLYICFSYFMIALYENLIPSDIPDWMISSINFPLYPLYLLMPA 121
Query: 162 IINLM---------SNKNIANWHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGS 212
I L+ S K+ N FF+ +L II +G + ++
Sbjct: 122 IFYLILDLAFKFTPSEKSRNNGINFAVAVSIPFFIYVLANIILINGSFIG----LNHL-- 175
Query: 213 ILVFAIIGTTISAFVIGAGVYIL 235
I++FAI T F+I +YIL
Sbjct: 176 IMIFAIGATASFLFLILRFLYIL 198
>gnl|CDD|222436 pfam13886, DUF4203, Domain of unknown function (DUF4203). This is
the N-terminal region of 7tm proteins. The function is
not known.
Length = 210
Score = 28.4 bits (64), Expect = 6.9
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 114 ERNSSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIAN 173
N+ + V V G +L F + + LG L+ + + N+
Sbjct: 49 VTNARLGASLVAGV-VGGAILGLLWWVFLIVSVGLFCVGLLLGFLLASALLFLPLGNLYI 107
Query: 174 WHKEETFSPTAFFLVLLPPIIFESGYNLHKGNFFQNIGSILVFAIIGTTISAFVIGAGVY 233
+H S + LL I + L +Q IL +++G A V+G +
Sbjct: 108 YH-----SDWVLLVTLLCGAILFALLTL----KWQKYLLILSTSVVGAA--AVVLGVDYF 156
Query: 234 I 234
Sbjct: 157 A 157
>gnl|CDD|185339 PRK15442, PRK15442, beta-lactamase TEM; Provisional.
Length = 284
Score = 28.7 bits (64), Expect = 7.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 155 LGALIGMI-INLMSNKNIANWHKEETFSPTAFFLVLL 190
LGA +G I ++L S K + ++ EE F + F VLL
Sbjct: 36 LGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLL 72
>gnl|CDD|223740 COG0668, MscS, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 316
Score = 28.7 bits (64), Expect = 7.8
Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 14/154 (9%)
Query: 117 SSIAIFFVLCVLALGILLIHFMLQFHFQYLPESIAIVFLGALIGMIINLMSNKNIANWHK 176
SSIA+ L +L L ++ + +L Y+ + ++ L L+ +++ L+ + +
Sbjct: 1 SSIAVVINLIILELLLIFLLKLLLRLLLYVLNGLLLILLRKLLLLLLILLIAFLLIAYLV 60
Query: 177 EETFSPTAFFLVLLPPIIFESGYNLHKGNFFQN--------IGSILVFAIIGTTISAFVI 228
+ L+ + E+ + F N + ++V +++G +++ +
Sbjct: 61 KLLLRSLLLLKALIRRLARETTLS----VFLSNLLRILILVVALLIVLSVLGVQVTSLLA 116
Query: 229 GAGVYILGLADVAYKLSFVESFAFGSLISAVDPV 262
G G LGLA + + G + P
Sbjct: 117 GLG--ALGLAIGLALQDLLSNLIAGIFLLLERPF 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.404
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,030,230
Number of extensions: 2797014
Number of successful extensions: 5380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5216
Number of HSP's successfully gapped: 352
Length of query: 523
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 422
Effective length of database: 6,457,848
Effective search space: 2725211856
Effective search space used: 2725211856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)