Query psy5407
Match_columns 147
No_of_seqs 142 out of 963
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 16:42:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944|consensus 100.0 2.2E-37 4.7E-42 236.6 9.8 134 6-147 61-196 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.8 7.3E-20 1.6E-24 115.8 2.6 51 97-147 1-51 (68)
3 TIGR02163 napH_ ferredoxin-typ 50.7 88 0.0019 24.3 6.9 79 38-116 4-102 (255)
4 PF10929 DUF2811: Protein of u 41.7 41 0.00088 20.3 2.9 18 33-50 21-38 (57)
5 PF11998 DUF3493: Protein of u 40.0 99 0.0021 19.7 6.2 52 35-86 13-64 (75)
6 PF04854 DUF624: Protein of un 28.2 1.5E+02 0.0032 18.1 4.8 39 85-123 21-63 (77)
7 PF06109 HlyE: Haemolysin E (H 27.1 1E+02 0.0022 23.6 3.6 44 79-122 178-224 (299)
8 PRK09609 hypothetical protein; 26.5 1.8E+02 0.004 23.6 5.2 52 5-69 60-111 (312)
9 COG1644 RPB10 DNA-directed RNA 24.3 87 0.0019 19.2 2.3 32 52-83 12-43 (63)
10 PF04835 Pox_A9: A9 protein co 23.4 1.7E+02 0.0038 17.3 4.3 40 56-95 7-46 (54)
11 PF07960 CBP4: CBP4; InterPro 23.1 50 0.0011 23.3 1.3 26 35-60 2-30 (128)
12 TIGR02230 ATPase_gene1 F0F1-AT 20.6 2.8E+02 0.006 18.6 5.1 33 38-70 39-74 (100)
13 PF10960 DUF2762: Protein of u 20.2 1.5E+02 0.0032 18.6 2.9 25 74-98 4-28 (71)
14 PF03698 UPF0180: Uncharacteri 20.1 97 0.0021 19.9 2.1 16 101-116 64-79 (80)
No 1
>KOG1944|consensus
Probab=100.00 E-value=2.2e-37 Score=236.57 Aligned_cols=134 Identities=36% Similarity=0.618 Sum_probs=126.4
Q ss_pred hhHhhhhhhhhhhhcccccCCCCCCCC-CCCCcHHHHHHHHHHHhh-hhhHHhHHHHHhhhhcCCCChhHHHHHHHhhhh
Q psy5407 6 RNFVVGDILEQYYQNHINTERPKSPTQ-EPSWNAIRTFHMSLSGAS-VGILCHHGYRLLDKLYPGRALSTVFKKVLFDQI 83 (147)
Q Consensus 6 ~l~~~gD~iaQ~~~~~~~~~~~~~~~~-~~~~D~~Rt~r~~~~G~~-~gp~~~~wy~~L~~~~p~~~~~~~~~Kv~~Dq~ 83 (147)
+++.+||+++|.++.... . .+.+|+.|++||+++|++ .||.+|+||+.||+.+|.++..++++|+++||+
T Consensus 61 ~~~~~~d~~~q~~~~~~~--------~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~~~~~~~~~kvl~dql 132 (222)
T KOG1944|consen 61 LLAAAGDVISQSLEGRSK--------KLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPKKTLITVVKKVLLDQL 132 (222)
T ss_pred HHHHhchhhhhhhhhhcc--------cccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccCccHHHHHHHHHHhhh
Confidence 344999999999998643 2 478999999999999975 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCChHHHHHHHHHhhHHHhhhccccchHhhhhhhhcccCCcccccC
Q psy5407 84 FISPVLISVFFVTLGIMENSSSMDIYNEIYDKGRRLYMAEWVVWPPAQVINFYFLSTKYRVLYV 147 (147)
Q Consensus 84 v~~P~~~~~f~~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~Wp~~~~inF~~VP~~~Rvlfv 147 (147)
+++|+.+.+|+.+++++||++.++++++++++++|+++++|++||++|++||.+||+++|++|+
T Consensus 133 ~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~ 196 (222)
T KOG1944|consen 133 VFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFV 196 (222)
T ss_pred hhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhh
Confidence 9999999999999999999999999999999999999999999999999999999999999985
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.78 E-value=7.3e-20 Score=115.79 Aligned_cols=51 Identities=35% Similarity=0.756 Sum_probs=49.4
Q ss_pred HHhhcCCChHHHHHHHHHhhHHHhhhccccchHhhhhhhhcccCCcccccC
Q psy5407 97 LGIMENSSSMDIYNEIYDKGRRLYMAEWVVWPPAQVINFYFLSTKYRVLYV 147 (147)
Q Consensus 97 ~~~l~g~~~~~~~~~~~~~~~~~l~~~~~~Wp~~~~inF~~VP~~~Rvlfv 147 (147)
|+++||+|++++++++|++++++++++|++|||+|++||.|||++||++|+
T Consensus 1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~ 51 (68)
T PF04117_consen 1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFV 51 (68)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhh
Confidence 678999999999999999999999999999999999999999999999985
No 3
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=50.66 E-value=88 Score=24.27 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhh-hhhHHhHHH--HHhh--h---hcCCCChhHHHHHHHhhhhhhhHHHHHHHH--HHHHhhcCC----
Q psy5407 38 AIRTFHMSLSGAS-VGILCHHGY--RLLD--K---LYPGRALSTVFKKVLFDQIFISPVLISVFF--VTLGIMENS---- 103 (147)
Q Consensus 38 ~~Rt~r~~~~G~~-~gp~~~~wy--~~L~--~---~~p~~~~~~~~~Kv~~Dq~v~~P~~~~~f~--~~~~~l~g~---- 103 (147)
+||+...++...+ .||..+.|. +.|. + .+|..+....+.-++..+.+..+++..... ...+++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~l~~GR~fCg 83 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIGALIIVAFYALFGGRAFCS 83 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhccccee
Confidence 6888899999987 799887776 4343 2 245567777777777777766666655543 334666666
Q ss_pred ------ChHHHHHHHHHhh
Q psy5407 104 ------SSMDIYNEIYDKG 116 (147)
Q Consensus 104 ------~~~~~~~~~~~~~ 116 (147)
.+.|..++++++.
T Consensus 84 wiCP~g~~~el~~~l~~k~ 102 (255)
T TIGR02163 84 WVCPVNLVTDFAAWLRRKL 102 (255)
T ss_pred ccCCchHHHHHHHHHHHhh
Confidence 3466666665544
No 4
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=41.69 E-value=41 Score=20.31 Aligned_cols=18 Identities=33% Similarity=0.809 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHHhh
Q psy5407 33 EPSWNAIRTFHMSLSGAS 50 (147)
Q Consensus 33 ~~~~D~~Rt~r~~~~G~~ 50 (147)
.+.||..|.+.-++.|++
T Consensus 21 hP~WDQ~Rl~~aALa~FL 38 (57)
T PF10929_consen 21 HPNWDQYRLFQAALAGFL 38 (57)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 468999999999999986
No 5
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=39.99 E-value=99 Score=19.69 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHhhhhhHHhHHHHHhhhhcCCCChhHHHHHHHhhhhhhh
Q psy5407 35 SWNAIRTFHMSLSGASVGILCHHGYRLLDKLYPGRALSTVFKKVLFDQIFIS 86 (147)
Q Consensus 35 ~~D~~Rt~r~~~~G~~~gp~~~~wy~~L~~~~p~~~~~~~~~Kv~~Dq~v~~ 86 (147)
.-..-|.+|..+||++.+--.---+-.+-+.+.+.+...++.-..+|-...+
T Consensus 13 ~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~a~~~l~~~l~nlaI~igava 64 (75)
T PF11998_consen 13 AQAPFRGLRRFFYGAFGASAGIGLFIFLFRLIAGPDLNEALPNLAIQIGAVA 64 (75)
T ss_pred HHCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhhHhHHHHHHH
Confidence 3456799999999987433223334456666767777777777777766443
No 6
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=28.19 E-value=1.5e+02 Score=18.14 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhcCC-C---hHHHHHHHHHhhHHHhhhc
Q psy5407 85 ISPVLISVFFVTLGIMENS-S---SMDIYNEIYDKGRRLYMAE 123 (147)
Q Consensus 85 ~~P~~~~~f~~~~~~l~g~-~---~~~~~~~~~~~~~~~l~~~ 123 (147)
..|-..+.+.......+++ + +++-++..|+++......+
T Consensus 21 igPA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~~~ 63 (77)
T PF04854_consen 21 IGPATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQSLLLG 63 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666 2 3444555555555554433
No 7
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=27.10 E-value=1e+02 Score=23.63 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=31.2
Q ss_pred HhhhhhhhHHH-HHHHHHHHHhhcCCChHHHHHHHHH--hhHHHhhh
Q psy5407 79 LFDQIFISPVL-ISVFFVTLGIMENSSSMDIYNEIYD--KGRRLYMA 122 (147)
Q Consensus 79 ~~Dq~v~~P~~-~~~f~~~~~~l~g~~~~~~~~~~~~--~~~~~l~~ 122 (147)
+.--.+..|+. +..|-...++.||+-..+.++++|. +|+.++.+
T Consensus 178 aaagvv~~pfgliisysiaagvvegklip~lk~klksv~~ff~~l~~ 224 (299)
T PF06109_consen 178 AAAGVVGRPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFESLSN 224 (299)
T ss_dssp HGGGGSS-HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCceEEEeehhhhhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 34456788995 5566677789999988888888874 67766643
No 8
>PRK09609 hypothetical protein; Provisional
Probab=26.49 E-value=1.8e+02 Score=23.62 Aligned_cols=52 Identities=12% Similarity=0.179 Sum_probs=41.4
Q ss_pred hhhHhhhhhhhhhhhcccccCCCCCCCCCCCCcHHHHHHHHHHHhhhhhHHhHHHHHhhhhcCCC
Q psy5407 5 VRNFVVGDILEQYYQNHINTERPKSPTQEPSWNAIRTFHMSLSGASVGILCHHGYRLLDKLYPGR 69 (147)
Q Consensus 5 ~~l~~~gD~iaQ~~~~~~~~~~~~~~~~~~~~D~~Rt~r~~~~G~~~gp~~~~wy~~L~~~~p~~ 69 (147)
+..++++|++.-.+.. ..+.+.=|+.-++.|++.|-+.++.|+.+.++|.++
T Consensus 60 ~ivG~lsDLLs~li~p-------------G~ffPgFTLsa~l~GlI~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 60 FFTGLLSDLISFLFVP-------------GVYHPYYTLAAMVYGFIPGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred HHHHHHHHHHHHHhcC-------------CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4667888998865532 367888888888889899999899999999998764
No 9
>COG1644 RPB10 DNA-directed RNA polymerase, subunit N (RpoN/RPB10) [Transcription]
Probab=24.29 E-value=87 Score=19.23 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=26.1
Q ss_pred hhHHhHHHHHhhhhcCCCChhHHHHHHHhhhh
Q psy5407 52 GILCHHGYRLLDKLYPGRALSTVFKKVLFDQI 83 (147)
Q Consensus 52 gp~~~~wy~~L~~~~p~~~~~~~~~Kv~~Dq~ 83 (147)
-|+.|.|..+.+++-.+.+...++-.+.++.-
T Consensus 12 kvi~~~w~~y~~rv~~ge~p~~vLDdLGv~RY 43 (63)
T COG1644 12 KVIGHKWEEYKRRVEEGEDPGEVLDDLGVKRY 43 (63)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHhCcHHH
Confidence 68899999999999888877777777766664
No 10
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=23.38 E-value=1.7e+02 Score=17.34 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=30.5
Q ss_pred hHHHHHhhhhcCCCChhHHHHHHHhhhhhhhHHHHHHHHH
Q psy5407 56 HHGYRLLDKLYPGRALSTVFKKVLFDQIFISPVLISVFFV 95 (147)
Q Consensus 56 ~~wy~~L~~~~p~~~~~~~~~Kv~~Dq~v~~P~~~~~f~~ 95 (147)
|...-+-|..+-.+++..+..|+++...++--+.+.+++.
T Consensus 7 H~~myfce~k~R~NsF~fViik~vismimylilGi~L~yi 46 (54)
T PF04835_consen 7 HCFMYFCENKLRPNSFWFVIIKSVISMIMYLILGIALIYI 46 (54)
T ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5666677888877889999999999988776666555443
No 11
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=23.13 E-value=50 Score=23.26 Aligned_cols=26 Identities=23% Similarity=-0.045 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHHhh---hhhHHhHHHH
Q psy5407 35 SWNAIRTFHMSLSGAS---VGILCHHGYR 60 (147)
Q Consensus 35 ~~D~~Rt~r~~~~G~~---~gp~~~~wy~ 60 (147)
...|.|.++|.++|.+ .||.+..|-.
T Consensus 2 ~~~w~~W~K~~~~G~~ii~~G~~l~~y~t 30 (128)
T PF07960_consen 2 PPNWRRWAKMLVAGAVIIGGGPALVKYTT 30 (128)
T ss_pred CchHHHHHHHHHhcceeEeechHHheecC
Confidence 3578999999999863 4888777654
No 12
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.60 E-value=2.8e+02 Score=18.62 Aligned_cols=33 Identities=21% Similarity=-0.051 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhh-hhhHHhHHH--HHhhhhcCCCC
Q psy5407 38 AIRTFHMSLSGAS-VGILCHHGY--RLLDKLYPGRA 70 (147)
Q Consensus 38 ~~Rt~r~~~~G~~-~gp~~~~wy--~~L~~~~p~~~ 70 (147)
++....++.+|.. .+|+.-.-| .+||+.+++..
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 4455557778874 677766666 48999998743
No 13
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=20.19 E-value=1.5e+02 Score=18.59 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH
Q psy5407 74 VFKKVLFDQIFISPVLISVFFVTLG 98 (147)
Q Consensus 74 ~~~Kv~~Dq~v~~P~~~~~f~~~~~ 98 (147)
-+.|+++.|-+|+-++..+++..+-
T Consensus 4 ei~k~~~sQG~fA~LFv~Ll~yvlK 28 (71)
T PF10960_consen 4 EIIKLALSQGIFAVLFVWLLFYVLK 28 (71)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3578999999999998777766553
No 14
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.11 E-value=97 Score=19.93 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=13.5
Q ss_pred cCCChHHHHHHHHHhh
Q psy5407 101 ENSSSMDIYNEIYDKG 116 (147)
Q Consensus 101 ~g~~~~~~~~~~~~~~ 116 (147)
+|+|.+||.+.+++++
T Consensus 64 ~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 64 SGLTAEEIVQEVEERL 79 (80)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 6899999999998764
Done!