Query psy5407
Match_columns 147
No_of_seqs 142 out of 963
Neff 7.9
Searched_HMMs 13730
Date Fri Aug 16 16:42:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5407.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5407hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 46.0 1.3 9.4E-05 24.6 -0.8 27 9-46 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 31.7 34 0.0025 18.0 3.8 24 35-58 7-31 (52)
3 d1h2vc1 a.118.1.14 (C:29-290) 14.9 1.7E+02 0.012 19.8 6.1 69 71-139 36-113 (262)
4 d2v9va1 a.4.5.35 (A:377-437) C 14.5 35 0.0026 17.8 1.3 20 12-42 5-24 (61)
5 d3ct6a1 c.54.1.2 (A:1-123) PTS 14.4 69 0.005 19.5 3.1 33 83-115 87-119 (123)
6 d1khda1 a.46.2.1 (A:12-80) Ant 13.7 97 0.0071 16.3 5.3 54 58-112 2-58 (69)
7 d1k3xa1 a.156.1.2 (A:125-213) 13.6 21 0.0015 20.6 0.2 20 72-91 26-45 (89)
8 d1jt6a2 a.121.1.1 (A:73-187) M 12.7 53 0.0039 19.7 2.1 27 34-62 68-94 (115)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 11.3 1.4E+02 0.0099 16.6 3.6 34 64-97 24-60 (75)
10 d1jqra_ d.218.1.2 (A:) DNA pol 9.8 38 0.0028 22.0 0.6 16 129-144 159-174 (174)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=45.97 E-value=1.3 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=19.4
Q ss_pred hhhhhhhhhhhcccccCCCCCCCCCCCCcHHHHHHHHH
Q psy5407 9 VVGDILEQYYQNHINTERPKSPTQEPSWNAIRTFHMSL 46 (147)
Q Consensus 9 ~~gD~iaQ~~~~~~~~~~~~~~~~~~~~D~~Rt~r~~~ 46 (147)
.+-|++||.-... +..++..|++++.+
T Consensus 22 ~ledilaqfeis~-----------~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISV-----------PSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCH-----------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHheecc-----------chHhHHHHHHHHHH
Confidence 3568999974431 35689999999865
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=31.75 E-value=34 Score=17.98 Aligned_cols=24 Identities=8% Similarity=-0.017 Sum_probs=15.7
Q ss_pred CCcHHHHHHHHHHHhh-hhhHHhHH
Q psy5407 35 SWNAIRTFHMSLSGAS-VGILCHHG 58 (147)
Q Consensus 35 ~~D~~Rt~r~~~~G~~-~gp~~~~w 58 (147)
-+|.+|++.-....++ .+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799998765555444 56666654
No 3
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.89 E-value=1.7e+02 Score=19.76 Aligned_cols=69 Identities=9% Similarity=0.207 Sum_probs=43.4
Q ss_pred hhHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCCh---HHHHHHHHHhhHHHhhhc-c-----ccchHhhhhhhhccc
Q psy5407 71 LSTVFKKVLFDQIFISPVLISVFFVTLGIMENSSS---MDIYNEIYDKGRRLYMAE-W-----VVWPPAQVINFYFLS 139 (147)
Q Consensus 71 ~~~~~~Kv~~Dq~v~~P~~~~~f~~~~~~l~g~~~---~~~~~~~~~~~~~~l~~~-~-----~~Wp~~~~inF~~VP 139 (147)
.+..+.+.+++.....|..+..|-+..++++-+.. +++.+++-+++-..+..+ | .+-=.+.+.|+..++
T Consensus 36 ~~~~il~~l~~~~~~~P~k~~~yA~Lv~llN~~~~e~g~~~l~~~~~~f~~~l~~~~~~~~~~llrFla~L~n~~Vv~ 113 (262)
T d1h2vc1 36 YKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIA 113 (262)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccCCCCc
Confidence 36677788888888889888888888888876653 244455555555555442 1 123455556665554
No 4
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=14.53 E-value=35 Score=17.76 Aligned_cols=20 Identities=25% Similarity=0.195 Sum_probs=14.2
Q ss_pred hhhhhhhhcccccCCCCCCCCCCCCcHHHHH
Q psy5407 12 DILEQYYQNHINTERPKSPTQEPSWNAIRTF 42 (147)
Q Consensus 12 D~iaQ~~~~~~~~~~~~~~~~~~~~D~~Rt~ 42 (147)
.++||.+++++ +.+||.-.+
T Consensus 5 kilaqiiqehr-----------egldwqeaa 24 (61)
T d2v9va1 5 KILAQIIQEHR-----------EGLDWQEAA 24 (61)
T ss_dssp HHHHHHHHHCS-----------SCEEHHHHH
T ss_pred HHHHHHHHHHH-----------ccCcHHHHH
Confidence 47899999864 567886543
No 5
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=14.43 E-value=69 Score=19.49 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHHHhhcCCChHHHHHHHHHh
Q psy5407 83 IFISPVLISVFFVTLGIMENSSSMDIYNEIYDK 115 (147)
Q Consensus 83 ~v~~P~~~~~f~~~~~~l~g~~~~~~~~~~~~~ 115 (147)
++-+|+.-..+-+......|.+++++.+++++-
T Consensus 87 ii~~p~tegal~Aa~~a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 87 IFNVPLIEGAYTASALLEAGATFEAIKEQLEKM 119 (123)
T ss_dssp ECCSCHHHHHHHHHHHHHTTCCHHHHHHHHGGG
T ss_pred EEcCchHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 355788888888888888999999999998653
No 6
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=13.69 E-value=97 Score=16.34 Aligned_cols=54 Identities=15% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHhhhhcCCCChhHHHHHHHhhhhh---hhHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy5407 58 GYRLLDKLYPGRALSTVFKKVLFDQIF---ISPVLISVFFVTLGIMENSSSMDIYNEI 112 (147)
Q Consensus 58 wy~~L~~~~p~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~l~g~~~~~~~~~~ 112 (147)
|-.+|+++..|.++..-=.+-++|+++ .++.-+..|+..+. .+|.+.+|+..-.
T Consensus 2 ~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~-~kg~t~dEi~g~~ 58 (69)
T d1khda1 2 HQPILEKLFKSQSMTQEESHQLFAAIVRGELEDSQLAAALISMK-MRGERPEEIAGAA 58 (69)
T ss_dssp CHHHHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH-HHCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 345678888777665555566666665 46777888888776 4788888876533
No 7
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=13.61 E-value=21 Score=20.62 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.1
Q ss_pred hHHHHHHHhhhhhhhHHHHH
Q psy5407 72 STVFKKVLFDQIFISPVLIS 91 (147)
Q Consensus 72 ~~~~~Kv~~Dq~v~~P~~~~ 91 (147)
...++.+++||-+++-+.|.
T Consensus 26 ~~~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 26 NRQFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp TSCHHHHTTCTTTSBTCCHH
T ss_pred cchHHHHHhcCccccccCcH
Confidence 34689999999999888653
No 8
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=12.73 E-value=53 Score=19.69 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHHHHhhhhhHHhHHHHHh
Q psy5407 34 PSWNAIRTFHMSLSGASVGILCHHGYRLL 62 (147)
Q Consensus 34 ~~~D~~Rt~r~~~~G~~~gp~~~~wy~~L 62 (147)
...+-.+....++.|++.|.. .||+--
T Consensus 68 f~~~d~~~~~~~il~~lng~~--~Wy~~~ 94 (115)
T d1jt6a2 68 WSINDVNAVSKIAANAVNGIV--TFTHEQ 94 (115)
T ss_dssp CCCSCHHHHHHHHHHHHHHHH--HSCTTS
T ss_pred eeccCHHHHHHHHHHHHHHHH--HHhccC
Confidence 333445777888888887655 577643
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.26 E-value=1.4e+02 Score=16.63 Aligned_cols=34 Identities=12% Similarity=0.433 Sum_probs=22.2
Q ss_pred hhcCC---CChhHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy5407 64 KLYPG---RALSTVFKKVLFDQIFISPVLISVFFVTL 97 (147)
Q Consensus 64 ~~~p~---~~~~~~~~Kv~~Dq~v~~P~~~~~f~~~~ 97 (147)
|.++| +..-++++++--+-+...|-++..|+++.
T Consensus 24 rafag~~~~gi~N~~RR~~~~~l~v~PPfi~~Y~iy~ 60 (75)
T d1ppjg_ 24 RAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYT 60 (75)
T ss_dssp CSSTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchHHhcccHHHHHhHHhceEEcCHHHHHHHHHH
Confidence 44554 45677888888555566777777776653
No 10
>d1jqra_ d.218.1.2 (A:) DNA polymerase X {African swine fever virus [TaxId: 10497]}
Probab=9.78 E-value=38 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.8
Q ss_pred HhhhhhhhcccCCccc
Q psy5407 129 PAQVINFYFLSTKYRV 144 (147)
Q Consensus 129 ~~~~inF~~VP~~~Rv 144 (147)
....++.-|+||+.|+
T Consensus 159 If~~LGl~yipPe~R~ 174 (174)
T d1jqra_ 159 LIKELGFTYRIPKKRL 174 (174)
T ss_dssp HHHHHTCCCCCGGGCC
T ss_pred HHHHcCCCCCChHhcC
Confidence 4677788899999885
Done!