RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5407
         (147 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.24
 Identities = 24/137 (17%), Positives = 46/137 (33%), Gaps = 29/137 (21%)

Query: 10  VGDILEQYYQNHINTERPKSPTQEPS-WNAIRTFHMSLS------GASVGILCHHGYRLL 62
             ++++ Y    I  +RP       + + A+   +  L       G +        Y   
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT------DDY--F 170

Query: 63  DKLYPGRALSTVFKKVLFDQIFISPVLISVFFVTLGIMENSSSMDIYNEIYDKGRRLYMA 122
           ++L   R L   +  ++ D       LI     TL   E   +     +++ +G  +   
Sbjct: 171 EEL---RDLYQTYHVLVGD-------LIKFSAETL--SELIRTTLDAEKVFTQGLNIL-- 216

Query: 123 EWVVWPPAQVINFYFLS 139
           EW+  P       Y LS
Sbjct: 217 EWLENPSNTPDKDYLLS 233



 Score = 30.0 bits (67), Expect = 0.32
 Identities = 24/128 (18%), Positives = 33/128 (25%), Gaps = 59/128 (46%)

Query: 6   RNFVV-GDI-----LEQYY----------QNHI-NTERPKS------PTQEPSWNAIRTF 42
           +N VV G       L              Q+ I  +ER         P   P       F
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP-------F 427

Query: 43  H-------------------MSLSGASVGILCHH---GYRLLDKLYPGRALSTVFKKVLF 80
           H                   +S +   + I  +    G  L       R LS    + + 
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL-------RVLSGSISERIV 480

Query: 81  DQIFISPV 88
           D I   PV
Sbjct: 481 DCIIRLPV 488


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.1 bits (59), Expect = 2.5
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 71  LSTVFKKVLFDQIFISPVLISVFFVTLGIMENSSSMDIYNEIYDKGRRLYMAEWVVWPPA 130
             ++  K   D I +S   +S        + +        E+  K    ++ E       
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-----EEMVQK----FVEE------V 86

Query: 131 QVINFYFLSTKYRVLY 146
             IN+ FL +  +   
Sbjct: 87  LRINYKFLMSPIKTEQ 102


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0618    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,357,748
Number of extensions: 127365
Number of successful extensions: 346
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 9
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)