RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5407
         (147 letters)



>d2o8sa1 a.295.1.1 (A:54-278) Uncharacterized protein AGR_C_984p
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 225

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 81  DQIFISPVLISVFFVTLGIMENSSSMDI 108
                   L  VF  T  + +  ++ D+
Sbjct: 160 LDFLADDALAQVFRTTFNLPDAFAAADV 187


>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
          elegans [TaxId: 6239]}
          Length = 312

 Score = 24.3 bits (52), Expect = 8.1
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 45 SLSGASVGILCHHGYRLLDKLYPGRALSTVFKKVLFDQ 82
            S      +     + +   +PG+A S   KKVLF +
Sbjct: 20 GASDEEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHE 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,072
Number of extensions: 24937
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 6
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (22.8 bits)