BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5411
         (88 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P39061|COIA1_MOUSE Collagen alpha-1(XVIII) chain OS=Mus musculus GN=Col18a1 PE=1 SV=4
          Length = 1774

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 2   NLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNP 61
           N++LLYT+    S TQ  ASF +PA  G++  FAL V    V  +V+CEE +     R  
Sbjct: 585 NISLLYTEPGA-SQTQTGASFRLPAFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARAS 643

Query: 62  QELLFDSASTLYLGQAG 78
           Q L  +  + L++GQAG
Sbjct: 644 QGLELERGAGLFVGQAG 660


>sp|P39059|COFA1_HUMAN Collagen alpha-1(XV) chain OS=Homo sapiens GN=COL15A1 PE=1 SV=2
          Length = 1388

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 41/74 (55%)

Query: 5   LLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQEL 64
           +LY        +Q  A+F +P  T ++ +FA+ V  + VT  VNCEE       R+ Q L
Sbjct: 135 ILYYTEPGSHVSQEAAAFSVPVMTHRWNRFAMIVQGEEVTLLVNCEEHSRIPFQRSSQAL 194

Query: 65  LFDSASTLYLGQAG 78
            F+S++ +++G AG
Sbjct: 195 AFESSAGIFMGNAG 208


>sp|P39060|COIA1_HUMAN Collagen alpha-1(XVIII) chain OS=Homo sapiens GN=COL18A1 PE=1 SV=5
          Length = 1754

 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 2   NLTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNP 61
           +++LLYT+      T   ASF +PA  G++   AL V    V  +V+CEE +   + R+ 
Sbjct: 549 DISLLYTEPGA-GQTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQRMPLARSS 607

Query: 62  QELLFDSASTLYLGQAG 78
           + L  +  + L++ QAG
Sbjct: 608 RGLELEPGAGLFVAQAG 624


>sp|O35206|COFA1_MOUSE Collagen alpha-1(XV) chain OS=Mus musculus GN=Col15a1 PE=1 SV=2
          Length = 1367

 Score = 42.0 bits (97), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 40/76 (52%)

Query: 5   LLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQEL 64
           +LY        ++  A F +P  T ++ +FA+ V  + V  F++CEE    R  R+   L
Sbjct: 135 ILYYTEPGSHVSREAAVFSVPVMTNRWNRFAVTVQGEEVALFMDCEEQSQVRFQRSSWPL 194

Query: 65  LFDSASTLYLGQAGPI 80
            F+ ++ +++G AG +
Sbjct: 195 TFEPSAGIFVGNAGAM 210


>sp|Q9SZI3|NPR2_ARATH Regulatory protein NPR2 OS=Arabidopsis thaliana GN=NPR2 PE=3 SV=1
          Length = 600

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 12/67 (17%)

Query: 7  YTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLF 66
          ++D  +FS T           +G  F FA + +LD  T F+   E+ + +++ N  E +F
Sbjct: 12 FSDSYEFSNT-----------SGNSF-FAAESSLDYPTEFLTPPEVSALKLLSNCLESVF 59

Query: 67 DSASTLY 73
          DS  T Y
Sbjct: 60 DSPETFY 66


>sp|Q2GHF1|GLYA_EHRCR Serine hydroxymethyltransferase OS=Ehrlichia chaffeensis (strain
           Arkansas) GN=glyA PE=3 SV=1
          Length = 420

 Score = 29.3 bits (64), Expect = 7.0,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 25  PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSAS 70
           P+ +GK+F  A++  +D  T  ++ +EIE   V  NP  ++  S+S
Sbjct: 135 PSISGKWFN-AVQYQVDRDTGLIDMDEIEKLAVEHNPSLIIAGSSS 179


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.138    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,705,787
Number of Sequences: 539616
Number of extensions: 925444
Number of successful extensions: 1835
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1829
Number of HSP's gapped (non-prelim): 8
length of query: 88
length of database: 191,569,459
effective HSP length: 58
effective length of query: 30
effective length of database: 160,271,731
effective search space: 4808151930
effective search space used: 4808151930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)