Query psy5411
Match_columns 88
No_of_seqs 101 out of 215
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 16:48:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2erf_A Thrombospondin-1; TSP-1 99.8 2.5E-19 8.6E-24 126.7 7.6 80 1-86 102-185 (209)
2 1za4_A Thrombospondin 1; TSP-1 99.8 1E-18 3.5E-23 126.9 8.0 79 2-86 113-195 (251)
3 2uur_A Collagen alpha-1(IX) ch 99.8 3E-18 1E-22 124.2 9.7 79 2-86 129-209 (245)
4 2r16_A Neurexin-1-alpha; beta- 98.0 6.1E-05 2.1E-09 51.0 9.7 52 23-77 81-132 (182)
5 1pz7_A Agrin; structural prote 97.9 8.5E-05 2.9E-09 50.9 9.3 54 23-79 103-157 (204)
6 3v64_A Low-density lipoprotein 97.9 0.00011 3.7E-09 50.1 9.4 54 24-79 91-144 (191)
7 3sh4_A LG3 peptide; actin disa 97.9 7.7E-05 2.6E-09 51.0 8.2 54 23-78 89-142 (195)
8 3kqr_A Serum amyloid P-compone 97.8 0.00016 5.6E-09 50.3 8.7 64 20-86 80-145 (204)
9 2h0b_A Neurexin-1-alpha; B-san 97.8 0.00016 5.6E-09 48.4 8.4 53 24-79 84-137 (184)
10 3pvn_A C-reactive protein; pen 97.7 0.00023 8E-09 49.4 8.4 63 20-85 82-146 (206)
11 1dyk_A Laminin alpha 2 chain; 97.6 0.0002 6.7E-09 53.3 7.9 53 24-78 290-342 (394)
12 3asi_A Neurexin-1-alpha; beta- 97.6 0.00027 9.3E-09 52.8 8.3 53 24-77 306-358 (410)
13 3pve_A Agrin, AGRN protein; mR 97.4 0.00092 3.1E-08 45.2 8.0 53 24-78 91-143 (189)
14 3bod_A Neurexin-1-alpha; neure 97.3 0.0019 6.5E-08 43.3 8.3 53 24-78 86-139 (178)
15 3flp_A SAP-like pentraxin; phy 97.2 0.00091 3.1E-08 46.7 6.7 61 23-85 91-153 (217)
16 1d2s_A SHBG, sex hormone-bindi 97.2 0.0014 4.9E-08 43.8 7.0 49 24-78 81-129 (170)
17 1f5f_A SHBG, sex hormone-bindi 97.2 0.0017 5.8E-08 44.4 7.4 55 24-78 93-147 (205)
18 2jd4_A Laminin subunit alpha-1 97.0 0.0012 3.9E-08 48.7 5.2 52 25-78 279-330 (383)
19 2jd4_A Laminin subunit alpha-1 96.7 0.0083 2.8E-07 44.0 8.0 53 24-78 98-150 (383)
20 2wjs_A Laminin subunit alpha-2 96.7 0.005 1.7E-07 48.1 7.1 51 24-78 465-515 (608)
21 4dqa_A Uncharacterized protein 96.6 0.0057 1.9E-07 45.7 6.8 52 25-78 217-270 (355)
22 1dyk_A Laminin alpha 2 chain; 96.6 0.0097 3.3E-07 44.0 8.0 53 24-79 112-164 (394)
23 3asi_A Neurexin-1-alpha; beta- 96.6 0.0063 2.1E-07 45.3 6.9 52 24-79 82-134 (410)
24 2r1d_A Neurexin-1-beta, neurex 96.5 0.014 4.8E-07 40.9 7.7 52 24-77 120-172 (226)
25 1h30_A GAS6, growth-arrest-spe 96.3 0.033 1.1E-06 41.7 9.2 53 24-79 116-172 (422)
26 2wjs_A Laminin subunit alpha-2 96.0 0.029 1E-06 43.7 8.1 56 24-79 280-340 (608)
27 2r1b_A Neurexin-1-beta, neurex 95.6 0.03 1E-06 38.9 6.0 28 25-52 93-120 (220)
28 4b1m_A Levanase; hydrolase, CB 94.8 0.11 3.7E-06 35.1 6.8 38 18-55 120-157 (185)
29 3qcw_A Neurexin-1-alpha; synap 94.8 0.093 3.2E-06 44.5 7.7 53 24-77 1138-1190(1245)
30 3qcw_A Neurexin-1-alpha; synap 94.7 0.15 5E-06 43.3 8.6 50 25-77 511-560 (1245)
31 2v73_A CBM40, putative EXO-alp 93.2 0.65 2.2E-05 32.4 8.3 51 27-78 103-154 (191)
32 1a8d_A Tetanus neurotoxin; clo 90.6 0.51 1.8E-05 36.9 5.7 50 27-79 164-216 (452)
33 4azz_A Levanase; hydrolase; 1. 87.4 0.11 3.7E-06 34.2 0.0 30 24-53 105-134 (172)
34 3zr5_A Galactocerebrosidase; h 87.5 1.8 6.3E-05 34.9 7.1 39 17-55 586-624 (656)
35 1h30_A GAS6, growth-arrest-spe 85.3 1.6 5.6E-05 32.3 5.5 55 23-77 310-370 (422)
36 3v0a_B NTNH; botulinum neuroto 78.5 7.1 0.00024 33.5 7.2 44 17-61 952-997 (1196)
37 3iln_A Laminarinase; jelly ROW 77.0 11 0.00039 26.2 7.2 38 20-57 156-193 (251)
38 2jkb_A Sialidase B; intramolec 70.8 5.2 0.00018 32.2 4.5 29 30-58 131-161 (686)
39 1cpn_A Circularly permuted; hy 68.1 11 0.00037 25.7 5.2 41 27-67 82-124 (208)
40 2ayh_A 1,3-1,4-beta-D-glucan 4 64.3 15 0.0005 24.8 5.2 29 27-55 140-168 (214)
41 2sli_A Intramolecular trans-si 63.5 9.4 0.00032 30.7 4.7 47 30-77 109-158 (679)
42 3i4i_A 1,3-1,4-beta-glucanase; 63.2 23 0.00078 24.7 6.2 30 27-56 160-189 (234)
43 3imm_A Putative secreted glyco 59.5 11 0.00039 25.6 4.0 28 27-54 118-145 (201)
44 3o5s_A Beta-glucanase; glycosy 57.1 16 0.00056 25.4 4.6 41 27-67 164-206 (238)
45 3s5q_A Putative glycosylhydrol 54.4 15 0.00052 25.3 4.0 28 27-54 131-158 (214)
46 2uwa_A Cellulase; glycoside hy 53.7 33 0.0011 24.4 5.8 29 27-55 140-168 (274)
47 1ajk_A CPA16M-84, circularly p 53.5 25 0.00084 24.3 4.9 45 27-75 57-103 (214)
48 1dyp_A Kappa-carrageenase; hyd 51.3 23 0.0008 24.6 4.6 39 27-67 188-226 (271)
49 3juu_A Porphyranase B; glycosi 51.2 35 0.0012 24.3 5.6 33 24-56 194-227 (280)
50 2hyk_A Beta-1,3-glucanase; fam 50.6 27 0.00091 23.9 4.7 30 27-56 164-193 (245)
51 3h3l_A Putative sugar hydrolas 50.5 19 0.00065 25.3 4.0 30 27-56 151-180 (241)
52 3u1x_A Putative glycosyl hydro 50.4 19 0.00066 25.0 4.0 29 27-55 158-186 (236)
53 3osd_A Putative glycosyl hydro 50.3 19 0.00064 25.7 4.0 29 27-55 177-205 (265)
54 1ajo_A CPA16M-127, circularly 50.2 49 0.0017 22.5 6.0 41 27-67 14-56 (214)
55 3dgt_A Endo-1,3-beta-glucanase 46.1 38 0.0013 24.0 5.1 31 27-57 186-220 (280)
56 1umz_A Xyloglucan endotransgly 43.6 69 0.0024 22.9 6.1 29 27-55 129-157 (278)
57 2vy0_A Endo-beta-1,3-glucanase 43.4 46 0.0016 23.0 5.1 30 27-56 179-208 (264)
58 3azy_A Laminarinase; beta-jell 42.6 56 0.0019 22.7 5.5 31 26-56 173-203 (272)
59 1axk_A Gluxyn-1; bifunctional, 41.3 52 0.0018 24.9 5.4 29 27-55 82-110 (394)
60 1ofz_A Fucose-specific lectin; 41.0 43 0.0015 24.3 4.8 43 2-52 224-285 (312)
61 4ate_A Beta-porphyranase A; hy 40.2 54 0.0018 23.2 5.1 36 20-55 169-206 (266)
62 3rq0_A Glycosyl hydrolases fam 39.2 59 0.002 23.2 5.2 30 27-56 187-220 (269)
63 2adz_A Alpha-1-syntrophin; pro 39.1 28 0.00096 23.8 3.3 18 29-46 25-42 (178)
64 3hbk_A Putative glycosyl hydro 38.0 28 0.00097 24.4 3.3 29 27-55 161-190 (245)
65 3gne_A Val-1; alginate lyase, 37.1 57 0.002 23.4 4.8 28 26-53 160-198 (252)
66 1oq1_A Protein YESU; structura 37.0 45 0.0015 23.7 4.2 30 27-56 156-185 (223)
67 2zzj_A Glucuronan lyase A; bet 36.5 37 0.0012 24.3 3.7 34 19-52 137-177 (238)
68 1epw_A Bontoxilysin B, botulin 36.4 37 0.0013 29.8 4.1 45 28-75 998-1042(1290)
69 3h0o_A Beta-glucanase; 1,3-1,4 36.1 52 0.0018 23.1 4.4 31 26-56 90-120 (240)
70 1ups_A Glcnac-alpha-1,4-GAL-re 35.2 54 0.0018 24.6 4.6 30 26-55 209-238 (420)
71 2nyy_A Botulinum neurotoxin ty 34.8 1.5E+02 0.0053 26.0 7.6 50 28-80 1010-1060(1295)
72 1uai_A Alginate lyase, polygul 32.5 51 0.0017 22.8 3.8 47 27-78 153-199 (224)
73 1aqt_A ATP synthase; hydrolase 31.8 52 0.0018 21.0 3.5 23 27-49 55-82 (138)
74 1dyo_A Endo-1,4-beta-xylanase 31.0 1E+02 0.0036 19.6 6.0 45 3-49 90-139 (160)
75 2e5y_A ATP synthase epsilon ch 29.7 60 0.002 20.6 3.5 22 27-48 54-80 (133)
76 2vrs_A Sigma-C capsid protein; 28.9 18 0.00063 25.5 1.0 24 35-58 121-144 (211)
77 1o4z_A Beta-agarase B; glycosi 28.2 70 0.0024 23.4 4.1 30 27-56 225-255 (346)
78 4awd_A Beta-porphyranase; hydr 28.2 1.1E+02 0.0036 22.4 5.1 32 25-56 234-266 (324)
79 3zyp_A CIP1; metal binding pro 26.3 72 0.0025 21.3 3.7 30 25-54 132-162 (218)
80 3a9g_A Putative uncharacterize 25.0 51 0.0018 23.5 2.8 23 59-81 197-220 (354)
81 2rq6_A ATP synthase epsilon ch 24.2 71 0.0024 20.4 3.2 22 28-49 54-80 (138)
82 2do3_A Transcription elongatio 23.9 91 0.0031 18.1 3.3 28 32-59 35-62 (69)
83 3lkm_A MHCK-A, myosin heavy ch 23.3 66 0.0023 23.8 3.2 44 5-49 13-56 (307)
84 1o4y_A Beta-agarase A; glycosi 22.7 1.1E+02 0.0039 21.4 4.3 29 27-55 182-211 (288)
85 2hlv_A Odorant-binding protein 22.7 40 0.0014 21.0 1.7 19 19-37 5-23 (160)
86 3scy_A Hypothetical bacterial 22.5 1.8E+02 0.0062 19.5 6.1 51 27-79 268-327 (361)
87 3rsj_A BONT/F; clostridium bot 20.2 1.7E+02 0.0057 22.6 4.9 30 28-58 140-171 (413)
No 1
>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A
Probab=99.78 E-value=2.5e-19 Score=126.70 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=63.6
Q ss_pred CceEEEEecCCCCccceeeeEEE-CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCcee---eecCcEEEEee
Q psy5411 1 MNLTLLYTDVTKFSTTQPIASFL-IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELL---FDSASTLYLGQ 76 (88)
Q Consensus 1 ~~i~l~Ytd~~~~~~s~~~asF~-v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~---~~~~~~l~iGq 76 (88)
+.+.|+|+..+ . +..++|. ++++|++|||++|+|++++|+||+||++++++++.+....+. +++++.++|||
T Consensus 102 ~~l~~~y~~~g-~---~~~~~f~~v~l~dg~WH~l~l~V~~~~v~L~vDC~~~~~~~l~~~~~~~~~~~~~~~~~~~iGq 177 (209)
T 2erf_A 102 GTLDLSLTVQG-K---QHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAK 177 (209)
T ss_dssp TEEEEEEEETT-E---EEEEEESSCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEECSSCGGGTCCTTHHHHEEEEESC
T ss_pred CEEEEEEcCCC-C---EEEEEEeccccCCCcEEEEEEEEECCEEEEEEcCeEeEeEEccCCchhccccccCCceEEEEec
Confidence 35889996554 3 2345665 899999999999999999999999999999999998554431 23378999999
Q ss_pred cCCCCCCcee
Q psy5411 77 AGPIIKGALD 86 (88)
Q Consensus 77 aG~~~~~~f~ 86 (88)
++.. .+ |+
T Consensus 178 ~~~~-~~-F~ 185 (209)
T 2erf_A 178 GGVN-DN-FQ 185 (209)
T ss_dssp CTTT-CB-CC
T ss_pred CCCC-CC-Ce
Confidence 9986 33 76
No 2
>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A
Probab=99.76 E-value=1e-18 Score=126.90 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=63.6
Q ss_pred ceEEEEecCCCCccceeeeEE-ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCce---eeecCcEEEEeec
Q psy5411 2 NLTLLYTDVTKFSTTQPIASF-LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQEL---LFDSASTLYLGQA 77 (88)
Q Consensus 2 ~i~l~Ytd~~~~~~s~~~asF-~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l---~~~~~~~l~iGqa 77 (88)
++.|+|+..+ + +...+| .++++|++|||+||+|++++|+||+||+++.++++.+...++ .+++++.++|||+
T Consensus 113 ~l~~~Y~~~g-~---~~~~~f~~~~L~Dg~WH~lalsV~~~~VtLyvDC~~~~~~~l~~~~~~i~~~~~~~~~~~~iGq~ 188 (251)
T 1za4_A 113 TLDLSLTVQG-K---QHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKG 188 (251)
T ss_dssp EEEEEEEETT-E---EEEEEESSCCCCSSSCEEEEEEEETTEEEEEETTSCCEEEECSSCGGGTSCTTGGGTEEEEESCC
T ss_pred EEEEEEEcCC-C---eeeEEEecccccCCCEEEEEEEEECCEEEEEECCcccceeeccCccccccccccCCCcEEEEEec
Confidence 5789998775 3 234555 579999999999999999999999999999999999854343 2344889999999
Q ss_pred CCCCCCcee
Q psy5411 78 GPIIKGALD 86 (88)
Q Consensus 78 G~~~~~~f~ 86 (88)
+... + |+
T Consensus 189 ~~~~-~-F~ 195 (251)
T 1za4_A 189 GVND-N-FQ 195 (251)
T ss_dssp STTC-B-CC
T ss_pred CCCC-C-Ce
Confidence 9863 3 75
No 3
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=124.19 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=64.5
Q ss_pred ceEEEEecCCCCccceeeeEEEC--CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCC
Q psy5411 2 NLTLLYTDVTKFSTTQPIASFLI--PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGP 79 (88)
Q Consensus 2 ~i~l~Ytd~~~~~~s~~~asF~v--~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~ 79 (88)
.+.|+|++.++.. ..++|.. +++||+|||++|+|++++|+||+||+++.++++.+ + ..++.++.++||+++.
T Consensus 129 ~l~~~y~~~~g~~---q~v~F~~~~~L~Dg~WHklalsV~~~~VtLyvDC~~~~~~~l~~-~--~~i~~~G~~~lG~~~~ 202 (245)
T 2uur_A 129 SVVFSYKGLDGSL---QTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIKP-R--GPIDIDGFAVLGKLAD 202 (245)
T ss_dssp EEEEEEEBTTSCE---EEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEEEECCC-B--CCCCCSSEEEEEEESS
T ss_pred EEEEEecCCCCCe---eEEEecCCccccCCCEEEEEEEEECCEEEEEEecCcccccccCC-C--CccccCCEEEEEEecC
Confidence 5889999987543 3489987 58999999999999999999999999999999975 2 3467789999999965
Q ss_pred CCCCcee
Q psy5411 80 IIKGALD 86 (88)
Q Consensus 80 ~~~~~f~ 86 (88)
.-...|+
T Consensus 203 ~~~~~f~ 209 (245)
T 2uur_A 203 NPQVSVP 209 (245)
T ss_dssp CTTCBCC
T ss_pred CCCCceE
Confidence 4222454
No 4
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}
Probab=98.02 E-value=6.1e-05 Score=50.95 Aligned_cols=52 Identities=8% Similarity=0.059 Sum_probs=38.3
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
..+..||+||++.+...+++++|.+|.+...+....-....|.++ .+|+|..
T Consensus 81 ~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~~~l~~~---~l~iGG~ 132 (182)
T 2r16_A 81 GYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH---NIETGII 132 (182)
T ss_dssp CSSCCSSSCEEEEEEEETTEEEEEETTCCEEEEECCSSCCCEEEE---EEEESSC
T ss_pred CcccCCCCeEEEEEEEECCEEEEEECCceeEeEECCCCccEEecc---CeEECCc
Confidence 346799999999999999999999999876543332222235554 4899865
No 5
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=97.93 E-value=8.5e-05 Score=50.89 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=40.1
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCC-ceeeecCcEEEEeecCC
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQ-ELLFDSASTLYLGQAGP 79 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~-~l~~~~~~~l~iGqaG~ 79 (88)
..+..||+||++.+...++.++|.+|.+...+.. +|. ...++..+.||||..-.
T Consensus 103 ~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~---~~~~~~~l~~~~~lylGG~p~ 157 (204)
T 1pz7_A 103 TVPINTNHWTHIKAYRVQREGSLQVGNEAPITGS---SPLGATQLDTDGALWLGGMER 157 (204)
T ss_dssp EEECCSSSCEEEEEEEETTEEEEEETTSCCEEEE---CCSSCCCEEECCEEEESSCSC
T ss_pred CcccCCCCeEEEEEEEeCCEEEEEECCcceEEEE---CCCCCceEcCCCCEEEecCCC
Confidence 3467899999999999999999999988654333 221 12345567999997654
No 6
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=97.90 E-value=0.00011 Score=50.07 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=40.9
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~ 79 (88)
.+..||+||++.+...+..++|.+|-....+....-.. ..++....||||-.-.
T Consensus 91 ~~v~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~--~~l~~~~~lylGG~p~ 144 (191)
T 3v64_A 91 VKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGA--TQLDTDGALWLGGLQK 144 (191)
T ss_dssp EECTTSSCEEEEEEEETTEEEEEETTSCCEEEECCTTC--CCEEECSEEEESCCSS
T ss_pred ccccCCCCEEEEEEEeCCEEEEEECCeeeEeEECCCCc--ceeccCCceEEcccCc
Confidence 46789999999999999999999998866544433222 2355567999997654
No 7
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Probab=97.87 E-value=7.7e-05 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
..+..||+||++.+...+..++|.+|.....+....... ..++..+.||||-.-
T Consensus 89 ~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~--~~l~~~~~lyvGG~p 142 (195)
T 3sh4_A 89 EDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPN--VAVNAKGSVYIGGAP 142 (195)
T ss_dssp EEECCSSSCEEEEEEEETTEEEEEETTCCCEEEECCSSC--CCCCCCSCEEESCCT
T ss_pred CceeCCCCeEEEEEEEeCCEEEEEECCeeeeeeeCCCCc--ccccCCCCEEECCCC
Confidence 346689999999999999999999999876544332211 234556789999763
No 8
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*
Probab=97.78 E-value=0.00016 Score=50.27 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=48.7
Q ss_pred eEEECCCCCCCceEEEEEEEC--CeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCcee
Q psy5411 20 ASFLIPAPTGKYFKFALKVTL--DGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGALD 86 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~~--~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f~ 86 (88)
+.+..+..+++||+++++-++ +.+.||+|-++..+..+... ..+.+++.+.|||.-....+.|+
T Consensus 80 ~~~~~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~~~~g---~~i~~~g~l~lGq~qd~~gg~f~ 145 (204)
T 3kqr_A 80 VTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQG---YFVEAQPKIVLGQEQDSYGGKFD 145 (204)
T ss_dssp EEEECCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSSSSCCCC
T ss_pred EEEecccCCCceEEEEEEEECCCCeEEEEECCEEeeeeccCCC---CEECCCcEEEEcccccCCCCCcC
Confidence 456678899999999999985 58999999999876544332 23567889999998665555554
No 9
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Probab=97.77 E-value=0.00016 Score=48.44 Aligned_cols=53 Identities=13% Similarity=0.151 Sum_probs=38.9
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCce-eeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQEL-LFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l-~~~~~~~l~iGqaG~ 79 (88)
.+..||+||++.+...+..++|.+|.....+... |... .++....+|||-.-.
T Consensus 84 ~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~---~~~~~~l~~~~~l~lGG~p~ 137 (184)
T 2h0b_A 84 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYT---QEDYTMLGSDDFFYVGGSPS 137 (184)
T ss_dssp SCSSSSSCEEEEEEEETTEEEEEETTTEEEEEEC---STTCCCEEECSEEEESCCTT
T ss_pred cccCCCCeEEEEEEEeCCEEEEEEcCceeeeeEC---CCCceeccCCCCEEECCCCc
Confidence 3568999999999999999999999876544332 3221 234456899987643
No 10
>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A
Probab=97.69 E-value=0.00023 Score=49.42 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=47.6
Q ss_pred eEEECCCCCCCceEEEEEEEC--CeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCce
Q psy5411 20 ASFLIPAPTGKYFKFALKVTL--DGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGAL 85 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~~--~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f 85 (88)
+.+..|..+++||+++++-++ +.++||+|-++..+..+... ..+.+++.+.|||.-....+.|
T Consensus 82 ~~~~~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~~~~g---~~i~~~g~l~lGq~qd~~gg~f 146 (206)
T 3pvn_A 82 ILFEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKG---YTVGAEASIILGQEQDSFGGNF 146 (206)
T ss_dssp EEEECSSCCSSCEEEEEEEETTTCEEEEEETTEECCCEECCTT---CCBCSSCEEEESSCCSBTTBCC
T ss_pred EEEeccCCCCceEEEEEEEECCCCeEEEEECCEEcccccccCC---cEECCCCEEEEccccccCCCCc
Confidence 456678899999999999986 58999999999876544332 2356788999999755544445
No 11
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=97.64 E-value=0.0002 Score=53.27 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+...++.++|.+|........ .. .....++....||||..-
T Consensus 290 ~~l~DG~WH~V~v~~~~~~~~L~VD~~~~~~~~-~~-~~~~~l~~~~~lylGG~p 342 (394)
T 1dyk_A 290 GHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQS-PN-SASTSADTNDPVFVGGFP 342 (394)
T ss_dssp TSTTSSSCEEEEEEEETTEEEEEETTEEEEEEC-CC-TTCCCBCCCBCCEESCCC
T ss_pred ccccCCceEEEEEEEeCCEEEEEECCccccccc-CC-CcceecccCCCEEEcCCC
Confidence 356999999999999999999999998764331 11 112345667789999763
No 12
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=97.61 E-value=0.00027 Score=52.76 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=39.0
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
.+..||+||++.+...++.++|.+|+....... .-......++....||||..
T Consensus 306 ~~l~DG~wH~V~v~r~~~~~~L~VD~~~~~~~~-~~g~~~~~~~~~~~lylGG~ 358 (410)
T 3asi_A 306 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERY-PAGRQLTIFNSQATIIIGGK 358 (410)
T ss_dssp CCCCSSSCEEEEEEEETTEEEEEETTSCCEEEC-CSSCCCCCBCCEEEEEESST
T ss_pred cCcCCCCeEEEEEEEECCEEEEEECCcceeccc-CCCccceeeeccceEEECCc
Confidence 456999999999999999999999998765431 11111123566789999965
No 13
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=97.39 E-value=0.00092 Score=45.23 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=37.2
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+...+..++|.+|=....+....-... .++....||||-.-
T Consensus 91 ~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~--~l~~~~~lyvGG~p 143 (189)
T 3pve_A 91 EPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHT--MLNLKEPLYVGGAP 143 (189)
T ss_dssp SCCCTTSEEEEEEEEETTEEEEEETTSCCEEEECCSSCC--CCCCCSCEEESCCS
T ss_pred cccCCCCEEEEEEEEeCCEEEEEECCceeEeEEcCCCcc--eecCCCCEEECCcC
Confidence 466999999999999999999999966543333221111 23444679999753
No 14
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=97.25 E-value=0.0019 Score=43.34 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=37.1
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCc-eeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQE-LLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~-l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+.-.+..++|.+|-....+.. ..+.. ..++....||||-.-
T Consensus 86 ~~vnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~--~~~~~~~~l~~~~~lylGG~p 139 (178)
T 3bod_A 86 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERY--PAGRQLTIFNSQATIIIGGKE 139 (178)
T ss_dssp SCCCSSSCEEEEEEEETTEEEEEETTSCCEEEC--CCSCCCCCBCCEEEEEESCCT
T ss_pred cCccCCCeEEEEEEEeCCEEEEEEeCCceeeee--cCCCcceEEeCCCcEEEeccc
Confidence 356899999999999999999999976653321 11111 124555679999753
No 15
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A
Probab=97.23 E-value=0.00091 Score=46.68 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=43.1
Q ss_pred ECCCCCCCceEEEEEEEC--CeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCCCCCce
Q psy5411 23 LIPAPTGKYFKFALKVTL--DGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPIIKGAL 85 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~--~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~~~~~f 85 (88)
+.+..+++||+++++-++ +.++||+|-++..+..... + ...+.+++.+.|||.-....+.|
T Consensus 91 ~~~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~~~~~~~-~-g~~i~~~g~l~lG~~~~~~gg~f 153 (217)
T 3flp_A 91 PIEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVG-K-GHQISAGGTVVIGQEQDKIGGGF 153 (217)
T ss_dssp EEECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESCSS-T-TCCBCSCBEEEESSCCSBTTBCC
T ss_pred ccccCCCCEEEEEEEEECCCCEEEEEECCEEecceeccc-c-CcEECCCCEEEeCCcccCCCCcc
Confidence 345679999999999986 6899999999886532111 1 12356788999999755444444
No 16
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*
Probab=97.19 E-value=0.0014 Score=43.80 Aligned_cols=49 Identities=22% Similarity=0.234 Sum_probs=35.3
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+...++.++|.+|=+... .. ..+..+.. +.+|||-.-
T Consensus 81 ~~vnDG~WH~V~v~~~~~~~~L~VD~~~~~--~~-~~~~~l~~---~~lylGG~p 129 (170)
T 1d2s_A 81 PRLDDGRWHQVEVKMEGDSVLLEVDGEEVL--RL-RQVSGHPI---MRIALGGLL 129 (170)
T ss_dssp CCCCSSSCEEEEEEEETTEEEEEETTEEEE--EE-TTCCCCCE---EEEEESSCS
T ss_pred CccCCCCCEEEEEEEeCCEEEEEECCeeee--ee-ccCCCccc---ccEEEECcc
Confidence 356999999999999999999999944332 22 23333332 689999764
No 17
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Probab=97.17 E-value=0.0017 Score=44.40 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=35.2
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+...++.++|.+|=....+..-...|........+.||||-.-
T Consensus 93 ~~vnDG~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p 147 (205)
T 1f5f_A 93 PRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLL 147 (205)
T ss_dssp CCCCSSSCEEEEEEEETTEEEEEETTEEEEEECSCCCCC----CCEEEEEESSCS
T ss_pred CccCCCCCEEEEEEEeCCEEEEEECCeeeeeeeccCCCcccccCCCceEEEeCcc
Confidence 3569999999999999999999999554322210112211112224789999764
No 18
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=96.95 E-value=0.0012 Score=48.67 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=37.4
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
+..||+||++.+...++.++|.+|.....+..-. .....++....||||..-
T Consensus 279 ~l~DG~WH~V~l~~~~~~~~L~VD~~~~~~~~~~--~~~~~l~~~~~lylGG~p 330 (383)
T 2jd4_A 279 ALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPH--THSTSADTNDPIYVGGYP 330 (383)
T ss_dssp GGGSSSCEEEEEEEETTEEEEEETTEEEEEC------CCCCBCCCEEEEESCCC
T ss_pred cccCCCcEEEEEEEcCCEEEEEECCeecccccCC--CCcccccCCCCEEEeccc
Confidence 3589999999999999999999999865432111 011245667789999763
No 19
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=96.67 E-value=0.0083 Score=44.03 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=37.6
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.+..||+||++.+...+..++|.+|=.........-.. -.++....||||-.-
T Consensus 98 ~~~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~--~~l~~~~~l~vGG~p 150 (383)
T 2jd4_A 98 ALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKA--TTLDVERKLYLGGLP 150 (383)
T ss_dssp CCCTTSSCEEEEEEEETTEEEEEETTEECCCEECCSSC--CCCCCCSEEEESSCC
T ss_pred ceecCCCcEEEEEEEeCCEEEEEEcCccccceecCCCc--ceecCCCCeEEeccC
Confidence 45689999999999999999999996655433321111 224445789999754
No 20
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=96.66 E-value=0.005 Score=48.08 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=37.9
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
....||+||++.++..++.++|++|.....+.+... ...++ ...+|||..-
T Consensus 465 ~~l~DG~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~---~~~l~-~~~lylGG~p 515 (608)
T 2wjs_A 465 NRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTE---EQPIE-VKKLFVGGAP 515 (608)
T ss_dssp SCSSSSSCEEEEEEECSSEEEEEESSSCCEEEECCC---CSCBC-CSCEEESCCC
T ss_pred cccCCCCeEEEEEEEeCCEEEEEECCcccccccCCc---ccccc-cCceEEeCCC
Confidence 456899999999999999999999998875443322 22233 3579998753
No 21
>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}
Probab=96.61 E-value=0.0057 Score=45.71 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=40.5
Q ss_pred CCCCCCceEEEEEEE--CCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 25 PAPTGKYFKFALKVT--LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 25 ~~~d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
+..+++||++|+... ++.++||+|=++..+......+ +.......++||+..
T Consensus 217 ~l~~g~W~HvA~t~d~~~~~~~lYvNG~~~~~~~~~~~~--~~~~~~~~l~IG~~~ 270 (355)
T 4dqa_A 217 PLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDG--FDPNSDMGFYIGRIY 270 (355)
T ss_dssp CCCSSCEEEEEEEEETTTTEEEEEETTEEEEEEECCCCC--BCTTSTTCEEESCCT
T ss_pred cccCCCEEEEEEEEECCCCEEEEEECCEEEEEEecCCCc--cccCCCceEEECCCC
Confidence 558899999999999 8999999999998777654333 333334679999864
No 22
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=96.60 E-value=0.0097 Score=44.05 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=36.7
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~ 79 (88)
.+..||+||++.+...+..++|.+|=....... ... .-.++....||||-.-.
T Consensus 112 ~~~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~--~g~-~~~l~~~~~l~vGG~p~ 164 (394)
T 1dyk_A 112 TKINDGQWHKIKIVRVKQEGILYVDDASSQTIS--PKK-ADILDVVGILYVGGLPI 164 (394)
T ss_dssp SCCCSSSCEEEEEEEETTEEEEEETTEEEEEEC--STT-CCCCCCCSEEEESSCCT
T ss_pred cccCCCCEEEEEEEEeCCEEEEEEcCcccceec--CCC-CceecCCCCEEEcccCC
Confidence 456899999999999999999999944432222 111 12244457899997643
No 23
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}
Probab=96.58 E-value=0.0063 Score=45.31 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=37.3
Q ss_pred CCCCCCCceEEEEEEECCe-EEEEECCccceeEEEecCCCceeeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDG-VTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~-VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~ 79 (88)
.+..||+||++.+...+.+ ++|.+|.+..... .+....++....+|||....
T Consensus 82 ~~vnDg~WH~V~v~r~~~~~~~l~VD~~~~~~~----~~~~~~l~~~~~lyvGG~p~ 134 (410)
T 3asi_A 82 KPLNDNQWHNVMISRDTSNLHTVKIDTKITTQI----TAGARNLDLKSDLYIGGVAK 134 (410)
T ss_dssp SCSCSSSCEEEEEEECTTCEEEEEETTEEEEEE----CTTCCCCCBCSCEEESCCCG
T ss_pred cEeCCCCeEEEEEEEcCCceEEEEECCEeceec----cCCccceecCCceEECcccc
Confidence 3568999999999998875 7999998765322 22222345567899998654
No 24
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=96.46 E-value=0.014 Score=40.90 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=36.1
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCc-eeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQE-LLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~-l~~~~~~~l~iGqa 77 (88)
.+..||+||++.+.-.+.+++|.+|=...... ...+.. ..++....||||-.
T Consensus 120 ~~vnDG~WH~V~v~r~~~~~~L~VD~~~~~~~--~~~~~~~~~l~~~~~lylGG~ 172 (226)
T 2r1d_A 120 AIINDGKYHVVRFTRSGGNATLQVDSWPVIER--YPAGRQLTIFNSQATIIIGGK 172 (226)
T ss_dssp SCCCSSSCEEEEEEEETTEEEEEETTSCCEEE--CCSSCCCCCBCSEEEEEESST
T ss_pred eEecCCCCEEEEEEEeCCEEEEEEcCccceEE--ecCCCcceeccCCCeEEEccc
Confidence 35689999999999999999999996543221 112211 23455568999965
No 25
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=96.27 E-value=0.033 Score=41.70 Aligned_cols=53 Identities=9% Similarity=0.032 Sum_probs=37.4
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCc-eeee---cCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQE-LLFD---SASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~-l~~~---~~~~l~iGqaG~ 79 (88)
.+..||+||++.+.-.+++++|.+|=+...+.. .|.. ..++ ....+|||-.-.
T Consensus 116 ~~~nDg~WH~V~v~r~~~~~~L~VD~~~~~~~~---~~g~~~~l~~~~~~~~lyvGG~p~ 172 (422)
T 1h30_A 116 PVINHGMWQTISVEELARNLVIKVNRDAVMKIA---VAGDLFQPERGLYHLNLTVGGIPF 172 (422)
T ss_dssp EECCSSCCEEEEEEECSSEEEEEETTEEEEEEE---CCSCSSEEETTEEECEEEESSCSS
T ss_pred ceecCCCCEEEEEEEcCCEEEEEECCeeeEEee---cCCcccccccccccceEEEecCcc
Confidence 456899999999999999999999965543332 2322 2233 246899997643
No 26
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}
Probab=96.01 E-value=0.029 Score=43.71 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=36.5
Q ss_pred CCCCCCCceEEEEEEECCeEEEEEC-CccceeE-EEecCCC---ceeeecCcEEEEeecCC
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVN-CEEIEST-RVVRNPQ---ELLFDSASTLYLGQAGP 79 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~D-C~~~~~~-~~~R~p~---~l~~~~~~~l~iGqaG~ 79 (88)
....||+||++.+...++.++|.+| |...... .....|. .|.+.....+|||-.-.
T Consensus 280 ~~~nDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~g~~~~l~~~~~~~lylGG~p~ 340 (608)
T 2wjs_A 280 QNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPT 340 (608)
T ss_dssp EECCSSSCEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSSCCCCCCCTTCEEEESCCCC
T ss_pred ccccCCceEEEEEEEecceEEEEEeccccccccccccccCCccccccccCCCceEEeccCc
Confidence 3568999999999999999999987 4432111 1112232 23322568999997643
No 27
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=95.60 E-value=0.03 Score=38.86 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccc
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEI 52 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~ 52 (88)
+..||+||++.+.-.+..++|-+|=...
T Consensus 93 ~vnDG~WH~V~v~r~~~~~~L~VD~~~~ 120 (220)
T 2r1b_A 93 IINDGKYHVVRFTRSGGNATLQVDSWPV 120 (220)
T ss_dssp CCCSSSCEEEEEEEETTEEEEEETTSCC
T ss_pred EecCCceEEEEEEEeCCEEEEEECCcce
Confidence 4689999999999999999999995543
No 28
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=94.84 E-value=0.11 Score=35.15 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=30.9
Q ss_pred eeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 18 PIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 18 ~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
.++..+.+...++|+++-|.|+|+.+++|+|-+++-+.
T Consensus 120 ~L~~~~~~~~~g~w~~l~I~~~G~~i~~~vnG~~v~~~ 157 (185)
T 4b1m_A 120 VIAEYKTPIDVNKKYHLKTEAEGDRFKIYLDDRLVIDA 157 (185)
T ss_dssp EEEEEECCCCSSCCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred EeeeccccCCCCCeEEEEEEEECCEEEEEECCEEEEEE
Confidence 34555556678999999999999999999999876444
No 29
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=94.82 E-value=0.093 Score=44.51 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=37.9
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
.+..||+||++.++-.+..++|.+|=...... ..-..+...++....||||..
T Consensus 1138 ~~v~DG~wH~V~i~r~~~~~~l~VD~~~~~~~-~~~g~~~~~~~~~~~l~lGg~ 1190 (1245)
T 3qcw_A 1138 AIINDGKYHVVRFTRSGGNATLQVDSWPVIER-YPAGRQLTIFNSQATIIIGGK 1190 (1245)
T ss_dssp CCCBSSSCEEEEEEEETTEEEEEETTSCCEEE-CCCSCCCCCBCSEEEEEESST
T ss_pred cEecCCCeEEEEEEECCCEEEEEECCeeeeec-cCCcceeEEeccCceEEECCc
Confidence 35689999999999999999999998765332 211111224566789999853
No 30
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Probab=94.68 E-value=0.15 Score=43.33 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=35.3
Q ss_pred CCCCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeec
Q psy5411 25 PAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQA 77 (88)
Q Consensus 25 ~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqa 77 (88)
+..||+||++.+...+..++|.+|=.+. +..-......++..+.+|||-.
T Consensus 511 ~vnDG~WH~V~l~r~~~~~~L~VD~~~~---~~~~~~~~~~l~~~~~lylGG~ 560 (1245)
T 3qcw_A 511 KVNDGEWYHVDFQRDGRSGTISVNTLRT---PYTAPGESEILDLDDELYLGGL 560 (1245)
T ss_dssp CCCSSCCEEEEEEEETTEEEEEETTEEE---EEECSSSCCCCCCCSCEEESSC
T ss_pred EecCCCEEEEEEEEecCEEEEEEccccc---ccccCCCcceeccCCceEEccc
Confidence 5689999999999999999999984432 2221111223455678999865
No 31
>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}
Probab=93.24 E-value=0.65 Score=32.39 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=36.1
Q ss_pred CCCCceEEEEEEEC-CeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 27 PTGKYFKFALKVTL-DGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 27 ~d~~Whr~alsV~~-~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.++.||.+++.+++ ..++||+|=+++.+..+..-.. +..-.-..+.||-..
T Consensus 103 ~~~~wntvaf~~d~~~~~~ly~NG~~V~t~~~~~~~f-i~~i~ln~~~IG~~~ 154 (191)
T 2v73_A 103 FNRGINTLALKIEKGIGAKIFLNGSLVKTVSDPNIKF-LNAINLNSGFIGKTD 154 (191)
T ss_dssp CCSSCEEEEEEEETTTEEEEEETTEEEEEEECTTCCC-GGGSCCCEEEESSCC
T ss_pred cCCceEEEEEEEcCCccEEEEECCEEEEEEecccccc-eeecCCceEEEccee
Confidence 34699999999997 5999999999998887653221 111134577777543
No 32
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*
Probab=90.58 E-value=0.51 Score=36.93 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=38.2
Q ss_pred CCCCceEEEEEEE-CCeEEEEECCccceeEEEecCCCceeeecCcEEEEe--ecCC
Q psy5411 27 PTGKYFKFALKVT-LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLG--QAGP 79 (88)
Q Consensus 27 ~d~~Whr~alsV~-~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iG--qaG~ 79 (88)
++++||.++++|. .+..++|+|=+.+.+..+.+.- .+. .+..+-+| ..+.
T Consensus 164 ~~nkW~fVtItvDR~g~~~IYING~Lv~s~~It~lG-~I~--ss~~i~~gi~~~~d 216 (452)
T 1a8d_A 164 LANKWVFITITNDRLSSANLYINGVLMGSAEITGLG-AIR--EDNNITLKLDRCNN 216 (452)
T ss_dssp SSSSCEEEEEEECTTSEEEEEETTEEEEEEECTTCC-CCC--CCSEEEEEEESCCC
T ss_pred cCCeEEEEEEEECCCCCEEEEECCEEeeccchhhcc-cee--ecCeEEEEEcccCC
Confidence 4799999999999 6777999999999999998764 333 35555555 5443
No 33
>4azz_A Levanase; hydrolase; 1.70A {Bacillus subtilis}
Probab=87.40 E-value=0.11 Score=34.18 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=25.3
Q ss_pred CCCCCCCceEEEEEEECCeEEEEECCccce
Q psy5411 24 IPAPTGKYFKFALKVTLDGVTAFVNCEEIE 53 (88)
Q Consensus 24 v~~~d~~Whr~alsV~~~~VtL~~DC~~~~ 53 (88)
.+...++|+++-|.|+|+.+++|+|=+++-
T Consensus 105 ~~~~~g~w~~l~I~~~G~~i~~~vnG~~v~ 134 (172)
T 4azz_A 105 TPIDVNKKYHLKTEAEGDRFKIYLDDRLVI 134 (172)
Confidence 345689999999999999999999965553
No 34
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A*
Probab=87.46 E-value=1.8 Score=34.91 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=32.6
Q ss_pred eeeeEEECCCCCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 17 QPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 17 ~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
..+++=.++...++||++.|+++|+.++-++|=+.+-+.
T Consensus 586 ~vLa~g~~~~~~~~w~~L~l~~~G~~i~~~ldG~~v~~~ 624 (656)
T 3zr5_A 586 ITYASGHADVTAKRWYTLTLGIKGYFAFGMLNGTILWKN 624 (656)
T ss_dssp SEEEEEECSCCTTCEEEEEEEEETTEEEEEETTEEEEEE
T ss_pred EEEEEEEecCCCCceEEEEEEEECCEEEEEECCEEEEEE
Confidence 455666678899999999999999999999998777543
No 35
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*
Probab=85.30 E-value=1.6 Score=32.33 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=32.0
Q ss_pred ECCCCCCCceEEEEEEECCeEEEEECCccceeEEEe-cCCCcee-----eecCcEEEEeec
Q psy5411 23 LIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVV-RNPQELL-----FDSASTLYLGQA 77 (88)
Q Consensus 23 ~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~-R~p~~l~-----~~~~~~l~iGqa 77 (88)
..+..||+||++.|++..+.-.|-+|=.......-. ..|..+. ++..+.||||-.
T Consensus 310 ~~~l~DG~WH~V~~~l~~~~~~L~vD~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lyiGG~ 370 (422)
T 1h30_A 310 EIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGL 370 (422)
T ss_dssp ECCTTSSCCEEEEEEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCC
T ss_pred eecccCCCEeEeEEEEEEeccEEEEeCCccceeechhhcccchhhhhhhhccCCceEEccc
Confidence 456799999999555555555577776554221000 0011221 355678999865
No 36
>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B
Probab=78.46 E-value=7.1 Score=33.54 Aligned_cols=44 Identities=5% Similarity=0.101 Sum_probs=35.3
Q ss_pred eeeeEEECCCCCCCceEEEEEEE--CCeEEEEECCccceeEEEecCC
Q psy5411 17 QPIASFLIPAPTGKYFKFALKVT--LDGVTAFVNCEEIESTRVVRNP 61 (88)
Q Consensus 17 ~~~asF~v~~~d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~p 61 (88)
.+-..|. +..+++||.++++|. |++..+|+|=+.+....++-.-
T Consensus 952 ~knI~f~-dy~~NkWyfITISvDRLGnalkIYINGkLv~~~sI~~l~ 997 (1196)
T 3v0a_B 952 EKNIYLS-DVSNNSWHYITISVDRLKEQLLIFIDDNLVANESIKEIL 997 (1196)
T ss_dssp EEEEEEC-SCCSSSCEEEEEEEETTTTEEEEEETTEEEEEEECTTCC
T ss_pred ccceEec-cccCCcEEEEEEEEcCCCceeEEEECCEEeechhhhhhc
Confidence 3445665 667899999999998 5566999999999988887654
No 37
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus}
Probab=76.99 E-value=11 Score=26.17 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=31.9
Q ss_pred eEEECCCCCCCceEEEEEEECCeEEEEECCccceeEEE
Q psy5411 20 ASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRV 57 (88)
Q Consensus 20 asF~v~~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~ 57 (88)
..+..+.....||..+|.-..+++++|+|=+++.+..-
T Consensus 156 ~~~~~~~~~~~fH~Y~veWt~~~I~~yVDg~~~~~~~~ 193 (251)
T 3iln_A 156 GSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPN 193 (251)
T ss_dssp EEEECTTTTTSCEEEEEEECSSEEEEEETTEEEEEEEC
T ss_pred eEEeCCCcccCcEEEEEEEECCEEEEEECCEEEEEEeC
Confidence 44556678899999999999999999999998866653
No 38
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*
Probab=70.83 E-value=5.2 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.036 Sum_probs=25.7
Q ss_pred CceEEEEEEE--CCeEEEEECCccceeEEEe
Q psy5411 30 KYFKFALKVT--LDGVTAFVNCEEIESTRVV 58 (88)
Q Consensus 30 ~Whr~alsV~--~~~VtL~~DC~~~~~~~~~ 58 (88)
.|+.+|+.|. .+.|+||+|=+++.+....
T Consensus 131 ~~~~va~~~d~~~~~~~lyvnG~~v~~~~~~ 161 (686)
T 2jkb_A 131 VENTLVFVSDSKDKTYTMYVNGIEVFSETVD 161 (686)
T ss_dssp CCEEEEEEEETTTTEEEEEETTEEEEEEECS
T ss_pred ceeEEEEEEECCCCeEEEEECCEEEEeeccc
Confidence 7999999999 7799999999999876644
No 39
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A
Probab=68.12 E-value=11 Score=25.70 Aligned_cols=41 Identities=7% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE--EecCCCceeee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR--VVRNPQELLFD 67 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~--~~R~p~~l~~~ 67 (88)
....||..++.-..+++++|+|=+++.+.. +...|..|++.
T Consensus 82 ~~~~fHtY~veW~p~~I~~yVDG~~~~t~~~~~P~~p~~lilN 124 (208)
T 1cpn_A 82 ASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMN 124 (208)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEEE
T ss_pred CccCcEEEEEEECCCeEEEEECCEEEEEecCCCCCCCcEEEEE
Confidence 457899999999999999999999886642 22334444444
No 40
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A
Probab=64.25 E-value=15 Score=24.75 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=25.9
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
....||..++.-..+++++|+|=+++.+.
T Consensus 140 ~~~~fH~Y~~~W~~~~I~~yvDg~~~~~~ 168 (214)
T 2ayh_A 140 ASKGFHTYAFDWQPGYIKWYVDGVLKHTA 168 (214)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCCCeEEEEEEEeCCEEEEEECCEEEEEc
Confidence 46789999999999999999999988664
No 41
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*
Probab=63.47 E-value=9.4 Score=30.70 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=33.0
Q ss_pred CceEEEEEEE--CCeEEEEECCccceeEEEecC-CCceeeecCcEEEEeec
Q psy5411 30 KYFKFALKVT--LDGVTAFVNCEEIESTRVVRN-PQELLFDSASTLYLGQA 77 (88)
Q Consensus 30 ~Whr~alsV~--~~~VtL~~DC~~~~~~~~~R~-p~~l~~~~~~~l~iGqa 77 (88)
.|+.+|+.|. .+.|+||+|=+++.+.+...- ... .+..-..+.||..
T Consensus 109 ~~~~va~~~~~~~~~~~lyvnG~~v~~~~~~~~~f~~-~~~~~~~~~iG~~ 158 (679)
T 2sli_A 109 VFNTVALKADAANKQCRLFANGELLATLDKDAFKFIS-DITGVDNVTLGGT 158 (679)
T ss_dssp CCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGG-GSTTCCEEEESSE
T ss_pred eeEEEEEEEECCCCeEEEEECCEEeEeeccccccccc-ccCCCceEEEeee
Confidence 6999999999 689999999999988776531 000 1222346667763
No 42
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid}
Probab=63.19 E-value=23 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=26.4
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
....||..+|.-..+++++|+|=+++.+..
T Consensus 160 ~~~~fHtY~ieW~p~~I~~yVDG~~~~t~~ 189 (234)
T 3i4i_A 160 ASEDFHIYAFNWQPNYIAWLVDGEEVYRAY 189 (234)
T ss_dssp TTTSCEEEEEEEETTEEEEEETTEEEEEEC
T ss_pred CcCCeEEEEEEEECCEEEEEECCEEEEEEc
Confidence 578999999999999999999988875543
No 43
>3imm_A Putative secreted glycosylhydrolase; YP_001301887.1, putative glycosyl hydrolase; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=59.54 E-value=11 Score=25.59 Aligned_cols=28 Identities=11% Similarity=0.292 Sum_probs=25.4
Q ss_pred CCCCceEEEEEEECCeEEEEECCcccee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIES 54 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~ 54 (88)
..|.|++.-|.|.+++|+.++|=+++..
T Consensus 118 p~GeWN~~~I~~~g~~i~v~lNG~~V~~ 145 (201)
T 3imm_A 118 KPGEWNHMRIKCAGQHIMVILNGKKVTE 145 (201)
T ss_dssp CTTSEEEEEEEEETTEEEEEETTEEEEE
T ss_pred CCCeeEEEEEEEECCEEEEEECCEEEEE
Confidence 4799999999999999999999988854
No 44
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A
Probab=57.15 E-value=16 Score=25.42 Aligned_cols=41 Identities=10% Similarity=0.348 Sum_probs=30.5
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE--EecCCCceeee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR--VVRNPQELLFD 67 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~--~~R~p~~l~~~ 67 (88)
....||..+|.-..+++++|+|=+++.+.. +...|..+.+.
T Consensus 164 ~~~~fHtY~ieW~p~~I~~yVDG~~~~~~~~~~P~~P~~l~ln 206 (238)
T 3o5s_A 164 AANAYHTYAFDWQPNSIKWYVDGQLKHTATNQIPTTPGKIMMN 206 (238)
T ss_dssp GGGSCEEEEEEECSSCEEEEETTEEEEEECSSCCCSCBEEEEE
T ss_pred CccCeEEEEEEEECCEEEEEECCEEEEEEcCCCCCCCeEEEEE
Confidence 568999999999999999999988776543 23334334443
No 45
>3s5q_A Putative glycosylhydrolase; concanavalin A-like lectins/glucanases, structural genomics, center for structural genomics, JCSG; 1.85A {Parabacteroides distasonis}
Probab=54.40 E-value=15 Score=25.29 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEECCeEEEEECCcccee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIES 54 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~ 54 (88)
..|.|++.-|.|.++.|+.++|=+++..
T Consensus 131 p~GeWN~~~I~~~g~~i~v~lNG~~V~~ 158 (214)
T 3s5q_A 131 KPGEWNRMIITAKGQQIDIELNGKHIVS 158 (214)
T ss_dssp CTTSEEEEEEEEETTEEEEEETTEEEEE
T ss_pred CCCccEEEEEEEECCEEEEEECCEEEEE
Confidence 4799999999999999999999988854
No 46
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A*
Probab=53.74 E-value=33 Score=24.38 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
....||..+|.-..+++++|||=+++.+.
T Consensus 140 ~~~~FHtY~ieWtp~~I~fyVDG~~v~t~ 168 (274)
T 2uwa_A 140 PTQDYHNYAIYWTPSEIIFFVDDVPIRRY 168 (274)
T ss_dssp TTSSCEEEEEEECSSEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEEEecCeEEEEECCeEEEEE
Confidence 46889999999999999999999888554
No 47
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2
Probab=53.48 E-value=25 Score=24.26 Aligned_cols=45 Identities=11% Similarity=0.299 Sum_probs=32.3
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE--EecCCCceeeecCcEEEEe
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR--VVRNPQELLFDSASTLYLG 75 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~--~~R~p~~l~~~~~~~l~iG 75 (88)
....||..++.-..++++.|+|=+++.+.. +...|..+++. |++|
T Consensus 57 ~~~~fHtY~ieW~p~~I~wyVDg~~v~t~~~~~P~~P~~iilN----lw~g 103 (214)
T 1ajk_A 57 ASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMN----LWNG 103 (214)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEEE----EEEC
T ss_pred CcCCcEEEEEEEcCCeEEEEECCEEEEEECCCCCCCCeEEEEE----EEcC
Confidence 457899999999999999999998876542 22334444444 5555
No 48
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2
Probab=51.33 E-value=23 Score=24.59 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFD 67 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~ 67 (88)
....||..+|.-..+++++|+|=+++.+. .+.+-.+++.
T Consensus 188 ~~~~fHtY~veW~~~~I~~yvDg~~~~~~--~~~~~~~ilN 226 (271)
T 1dyp_A 188 PRNDFHTYGVNVTKDKITWYVDGEIVGEK--DNLYWHRQMN 226 (271)
T ss_dssp TTSSCEEEEEEECSSEEEEEETTEEEEEE--ECSSCCSCEE
T ss_pred CCCCcEEEEEEEECCEEEEEECCEEEEee--cCCCceEEEE
Confidence 56899999999999999999999888554 3444445554
No 49
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans}
Probab=51.17 E-value=35 Score=24.31 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=28.1
Q ss_pred CCCCCCCceEEEEEEE-CCeEEEEECCccceeEE
Q psy5411 24 IPAPTGKYFKFALKVT-LDGVTAFVNCEEIESTR 56 (88)
Q Consensus 24 v~~~d~~Whr~alsV~-~~~VtL~~DC~~~~~~~ 56 (88)
.......||..+|.-. .+++++|+|=+++.+..
T Consensus 194 ~~~~~~~fHtY~veW~s~~~I~~yVDG~~~~t~~ 227 (280)
T 3juu_A 194 GGKAYEDFHVYGVWWKSKDEIIFFLDGKMQSKVT 227 (280)
T ss_dssp SSCTTTSCEEEEEEEEETTEEEEEETTEEEEEEC
T ss_pred CCCCCCCcEEEEEEEcCCCeEEEEECCEEEEEEc
Confidence 3457899999999998 99999999988876553
No 50
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A
Probab=50.63 E-value=27 Score=23.92 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=25.8
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
+...||..++.-..+.+++|+|=+++.+..
T Consensus 164 ~~~~fH~Y~~eW~~~~I~~yvDg~~~~~~~ 193 (245)
T 2hyk_A 164 FADTFHTFAVDWRPGSITWSVDGVAYQTYT 193 (245)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEEEeCCEEEEEECCEEEEEEc
Confidence 457899999999999999999988775544
No 51
>3h3l_A Putative sugar hydrolase; YP_001304206.1, structural genomic center for structural genomics, JCSG; HET: MSE; 1.59A {Parabacteroides distasonis atcc 8503}
Probab=50.51 E-value=19 Score=25.33 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=26.0
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
..|.|++.-|.|.++.|+.++|=+++..-.
T Consensus 151 p~GeWNt~~I~v~g~~v~v~lNG~~V~~~~ 180 (241)
T 3h3l_A 151 PYGNWNKTRIVVYNQRVIHYMNDVKILEFQ 180 (241)
T ss_dssp CTTSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CCCcceEEEEEEECCEEEEEECCEEEEEEE
Confidence 469999999999999999999998884433
No 52
>3u1x_A Putative glycosyl hydrolase; glycosyl hydrolysis, carbohydrate metabolism,, structural GE joint center for structural genomics, JCSG; HET: MSE PGE; 1.70A {Parabacteroides distasonis}
Probab=50.39 E-value=19 Score=25.03 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.7
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
..|.|++.-|.|.++.|+.++|=+.+..-
T Consensus 158 p~geWN~~~I~~~g~~i~v~lNG~~V~~~ 186 (236)
T 3u1x_A 158 PPGEWNSSMVLYKDGYVEHWLNGEKLFSF 186 (236)
T ss_dssp CTTSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEE
Confidence 57999999999999999999999887443
No 53
>3osd_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.80A {Bacteroides thetaiotaomicron} PDB: 3nmb_A 4hxc_A*
Probab=50.27 E-value=19 Score=25.74 Aligned_cols=29 Identities=24% Similarity=0.164 Sum_probs=25.4
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
..|.|++.-|.|.++.|+.++|=+.+..-
T Consensus 177 p~GeWNt~~I~v~g~~v~v~lNG~~V~d~ 205 (265)
T 3osd_A 177 PFGEWNKAKIMVYKGTVVHGQNDENVLEY 205 (265)
T ss_dssp CTTSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCCceEEEEEEEECCEEEEEECCEEEEEe
Confidence 36999999999999999999999888443
No 54
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2
Probab=50.16 E-value=49 Score=22.49 Aligned_cols=41 Identities=7% Similarity=0.237 Sum_probs=30.6
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE--EEecCCCceeee
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST--RVVRNPQELLFD 67 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~--~~~R~p~~l~~~ 67 (88)
....||..+|.=..+++++|+|=+.+.+. .+...|..+.+.
T Consensus 14 ~~~~fH~Y~i~W~~~~I~~~VDg~~~~~~~~~~p~~p~~l~ln 56 (214)
T 1ajo_A 14 ASKGFHTYAFDWQPGYIKWYVDGVLKHTATANIPSTPGKIMMN 56 (214)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEECSSCCCSCBEEEEE
T ss_pred CCCCcEEEEEEEeCCeEEEEECCEEEEEEcCCCCCCCeEEEEE
Confidence 56789999999999999999999987654 233444444444
No 55
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis}
Probab=46.13 E-value=38 Score=24.04 Aligned_cols=31 Identities=3% Similarity=0.121 Sum_probs=27.1
Q ss_pred CCCCceEEEEEEE----CCeEEEEECCccceeEEE
Q psy5411 27 PTGKYFKFALKVT----LDGVTAFVNCEEIESTRV 57 (88)
Q Consensus 27 ~d~~Whr~alsV~----~~~VtL~~DC~~~~~~~~ 57 (88)
....||..+|... .++++.|+|=+++.+..-
T Consensus 186 ~~~~fHtY~veW~~~~~~~~I~wyVDg~~~~t~~~ 220 (280)
T 3dgt_A 186 CQSGFHTYTMEWDRSVSPEAIRFSVDGVTYQTVTA 220 (280)
T ss_dssp TTTSCEEEEEEEECSSSSCEEEEEETTEEEEEEEG
T ss_pred cccCCEEEEEEEEeCCCCCeEEEEECCEEEEEEch
Confidence 6789999999998 799999999998876653
No 56
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A*
Probab=43.56 E-value=69 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=25.7
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
....||..+|.-..+++++|||=+++.+.
T Consensus 129 ~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~ 157 (278)
T 1umz_A 129 PTKEFHYYSVLWNMYMIVFLVDDVPIRVF 157 (278)
T ss_dssp TTTSCEEEEEEECSSEEEEEETTEEEEEE
T ss_pred CccCcEEEEEEEecCeEEEEECCeEEEEE
Confidence 46789999999999999999999888554
No 57
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus}
Probab=43.38 E-value=46 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=25.9
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
....||..++.-..+.+++|+|=+++.+..
T Consensus 179 ~~~~fH~Y~~eW~~~~I~~yvDg~~~~~~~ 208 (264)
T 2vy0_A 179 FTEDFHVFGIVWYPDKIKWYVDGTFYHEVT 208 (264)
T ss_dssp TTTSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred cCCCCEEEEEEEecCEEEEEECCEEEEEEc
Confidence 568899999999999999999987775543
No 58
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A
Probab=42.57 E-value=56 Score=22.74 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=26.3
Q ss_pred CCCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 26 APTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 26 ~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
.....||..++.-..+.+++|+|=+++.+..
T Consensus 173 ~~~~~fH~Y~~eW~~~~I~~yvDg~~~~~~~ 203 (272)
T 3azy_A 173 DFSEDFHIFSIEWDEDEVEWYVDGQLYHVLS 203 (272)
T ss_dssp CTTTSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CcCCCCEEEEEEEecCEEEEEECCEEEEEEc
Confidence 3568899999999999999999988775543
No 59
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11
Probab=41.33 E-value=52 Score=24.90 Aligned_cols=29 Identities=7% Similarity=0.116 Sum_probs=25.6
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
....||..+|.-..+++++|||=+++.+.
T Consensus 82 ~~~dFHtY~ieWtpd~I~fyVDG~~v~t~ 110 (394)
T 1axk_A 82 ASKGFHTYAFDWQPGYIKWYVDGVLKHTA 110 (394)
T ss_dssp GGGSCEEEEEEEETTEEEEEETTEEEEEE
T ss_pred CCCCcEEEEEEEeCCEEEEEECCEEEEEe
Confidence 45789999999999999999999988664
No 60
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=40.96 E-value=43 Score=24.33 Aligned_cols=43 Identities=9% Similarity=0.097 Sum_probs=27.9
Q ss_pred ceEEEEecCCCCccceeeeEEECCCCCCCce------------------EE-EEEEECCeEEEEECCccc
Q psy5411 2 NLTLLYTDVTKFSTTQPIASFLIPAPTGKYF------------------KF-ALKVTLDGVTAFVNCEEI 52 (88)
Q Consensus 2 ~i~l~Ytd~~~~~~s~~~asF~v~~~d~~Wh------------------r~-alsV~~~~VtL~~DC~~~ 52 (88)
.|.|||+..+ .. +...... +.|+ .+ ++++.++.++||+-=..+
T Consensus 224 ~i~lf~~~~~-n~----i~~~~~~---~~W~~~~~~~d~~~~~~~~~~s~~aa~s~~~~~i~lf~q~~~i 285 (312)
T 1ofz_A 224 NIRVYWQKGR-EE----LYEAAYG---GSWNTPGQIKDASRPTPSLPDTFIAANSSGNIDISVFFQASGV 285 (312)
T ss_dssp EEEEEEECTT-SC----EEEEEES---SSBCCCEEECCTTSCSCBCTTCCCEEEEETTTEEEEEEEETTT
T ss_pred EEEEEEECCC-Cc----EEEEEec---CCccccccccCcccccCcCCCCceEEEecCCCeEEEEEeCCee
Confidence 5788998765 21 2222222 6799 66 888888899998854433
No 61
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A*
Probab=40.18 E-value=54 Score=23.22 Aligned_cols=36 Identities=6% Similarity=0.296 Sum_probs=29.2
Q ss_pred eEEECC-CCCCCceEEEEEEE-CCeEEEEECCccceeE
Q psy5411 20 ASFLIP-APTGKYFKFALKVT-LDGVTAFVNCEEIEST 55 (88)
Q Consensus 20 asF~v~-~~d~~Whr~alsV~-~~~VtL~~DC~~~~~~ 55 (88)
..+.++ .....||..++.-. .+++++|+|=+++.+.
T Consensus 169 ~~~~~~~~~~~~fHtY~veW~~~~~I~~yVDg~~~~t~ 206 (266)
T 4ate_A 169 TEYKMPGRGRDNFYTYGFWWKSPNELLFYFNGKQVMRI 206 (266)
T ss_dssp EEEECSSCGGGCCEEEEEEEEETTEEEEEETTEEEEEE
T ss_pred cEEeCCCCCCCCcEEEEEEEcCCCEEEEEECCEEEEEE
Confidence 445554 36789999999998 9999999998877554
No 62
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis}
Probab=39.16 E-value=59 Score=23.23 Aligned_cols=30 Identities=3% Similarity=0.144 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEECCeEEEEEC---Ccc-ceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVN---CEE-IESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~D---C~~-~~~~~ 56 (88)
.+..||..+|.-..+++++|+| =++ +.+..
T Consensus 187 ~~~~fHtY~veW~~~~I~~yVD~vdG~~~~~t~~ 220 (269)
T 3rq0_A 187 VDNGWHRWRTQWDAEGARFWLDYTDGAQPYFEVA 220 (269)
T ss_dssp CCSSEEEEEEEEETTEEEEEESCCTTCCCSEEEE
T ss_pred CCCCcEEEEEEEECCEEEEEEECCCCcEEEEEEC
Confidence 6789999999999999999999 665 54443
No 63
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=39.14 E-value=28 Score=23.77 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=16.8
Q ss_pred CCceEEEEEEECCeEEEE
Q psy5411 29 GKYFKFALKVTLDGVTAF 46 (88)
Q Consensus 29 ~~Whr~alsV~~~~VtL~ 46 (88)
++|||+-++...+.+||=
T Consensus 25 ~~w~~V~~~L~~d~Ltl~ 42 (178)
T 2adz_A 25 ERWQRVLLSLAEDALTVS 42 (178)
T ss_dssp CCCEEEEEEEETTEEEEE
T ss_pred CceEeeeeeeccceEEee
Confidence 899999999999998876
No 64
>3hbk_A Putative glycosyl hydrolase; YP_001302580.1, WAS domain of U function (DUF1080), structural genomics; HET: MSE; 2.36A {Parabacteroides distasonis atcc 8503}
Probab=38.01 E-value=28 Score=24.41 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.2
Q ss_pred CCCCceEEEEEE-ECCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKV-TLDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV-~~~~VtL~~DC~~~~~~ 55 (88)
..|.|++.-|.| .++.|+.++|=+.+..-
T Consensus 161 p~GeWNt~~I~~~~g~~v~v~lNG~~V~~~ 190 (245)
T 3hbk_A 161 GVGEWNTAVVKVFPNNHVEHWLNGVKVLEY 190 (245)
T ss_dssp CTTSEEEEEEEECTTCEEEEEETTEEEEEE
T ss_pred CCCccEEEEEEEEcCCEEEEEECCEEEEEE
Confidence 469999999999 89999999998887443
No 65
>3gne_A Val-1; alginate lyase, polysaccharide lyase family 14, chlorella VI lyase; HET: FLC; 1.20A {Chlorella virus} PDB: 3a0n_A* 3im0_A*
Probab=37.07 E-value=57 Score=23.45 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCCCCceEEEEEEECCeE-----------EEEECCccce
Q psy5411 26 APTGKYFKFALKVTLDGV-----------TAFVNCEEIE 53 (88)
Q Consensus 26 ~~d~~Whr~alsV~~~~V-----------tL~~DC~~~~ 53 (88)
...|+|+.+...|+-|.+ .+++|=+++.
T Consensus 160 f~~G~W~~V~q~VkLNT~~~G~g~aDG~v~v~VNG~~v~ 198 (252)
T 3gne_A 160 LKYDVWNRIEIGTKMNTFKNGIPQLDGESYVIVNGKKEV 198 (252)
T ss_dssp SCBTSCEEEEEEEECCCEETTEECSCEEEEEEETTEEEE
T ss_pred EcCCceEEEEEEEEcCCCCCCCccCCceEEEEECCEEEE
Confidence 368999999999998886 8999988873
No 66
>1oq1_A Protein YESU; structural genomics, singleton, PSI, protein structure initi midwest center for structural genomics, MCSG, unknown funct; 1.70A {Bacillus subtilis} SCOP: b.29.1.17
Probab=37.01 E-value=45 Score=23.66 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=25.3
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
-.++|.|+-|.++++.|++.+|=+++=.-.
T Consensus 156 dan~~Y~i~i~kd~~~v~f~vNg~~lF~~~ 185 (223)
T 1oq1_A 156 DADSPYRMKLIKDKGYVHFSINGLPILEWM 185 (223)
T ss_dssp GCCSCEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CCCCcEEEEEEEeCCEEEEEECCEEEEEee
Confidence 347999999999999999999998874333
No 67
>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma reesei}
Probab=36.52 E-value=37 Score=24.27 Aligned_cols=34 Identities=12% Similarity=0.305 Sum_probs=26.2
Q ss_pred eeEE--ECCCCCCCceEEEEEEE-----CCeEEEEECCccc
Q psy5411 19 IASF--LIPAPTGKYFKFALKVT-----LDGVTAFVNCEEI 52 (88)
Q Consensus 19 ~asF--~v~~~d~~Whr~alsV~-----~~~VtL~~DC~~~ 52 (88)
...| ..|...|+||++.|.|+ .+-+.+++|=+.+
T Consensus 137 ~~~~~~l~~v~~G~Wh~iVihvkWs~d~~Gf~~vW~dG~~v 177 (238)
T 2zzj_A 137 IVTRPNLATVSAGAWHRVVLQIKWASDNTGYFKIWFDGAKV 177 (238)
T ss_dssp EEEEEEEEECCTTSCEEEEEEEEECSSTTEEEEEEETTEEE
T ss_pred ceeccccccccCCceEEEEEEEEEeCCCCcEEEEEECCEEE
Confidence 3445 34678999999999995 4568889998876
No 68
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease, transmembrane, hydrolase; 1.90A {Clostridium botulinum} SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A* 1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A 1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A 1z0h_A 2nm1_A 3g94_A 1f82_A ...
Probab=36.40 E-value=37 Score=29.78 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=35.2
Q ss_pred CCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEe
Q psy5411 28 TGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLG 75 (88)
Q Consensus 28 d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iG 75 (88)
.+|||.++++|.-++..+|+|=+.+....++-.- ..-++..+-+|
T Consensus 998 iNkW~fVTItndlg~~~IYING~Li~~~~I~~L~---dI~ss~~I~fg 1042 (1290)
T 1epw_A 998 INRWFFVTITNNLNNAKIYINGKLESNTDIKDIR---EVIANGEIIFK 1042 (1290)
T ss_dssp TTSCEEEEEEECSSEEEEEETTEEEEEEECSSCC---CCCCCSEEEEE
T ss_pred cCceEEEEEEecCCceEEEECCEEeechhhhhhh---ceeecceEEEE
Confidence 4999999999999999999999999888774332 23335666665
No 69
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A*
Probab=36.07 E-value=52 Score=23.06 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.1
Q ss_pred CCCCCceEEEEEEECCeEEEEECCccceeEE
Q psy5411 26 APTGKYFKFALKVTLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 26 ~~d~~Whr~alsV~~~~VtL~~DC~~~~~~~ 56 (88)
.....||..++.-..+.++.|+|=+++.+..
T Consensus 90 ~~~~~fHtY~ieW~~~~I~wyvDg~~~~t~~ 120 (240)
T 3h0o_A 90 AADQAFHTYGLEWTPNYVRWTVDGQEVRKTE 120 (240)
T ss_dssp CTTTSCEEEEEEECSSCEEEEETTEEEEEEC
T ss_pred CcccceEEEEEEEeCCEEEEEECCEEEEEEe
Confidence 4678999999999999999999998886554
No 70
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3
Probab=35.24 E-value=54 Score=24.59 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.6
Q ss_pred CCCCCceEEEEEEECCeEEEEECCccceeE
Q psy5411 26 APTGKYFKFALKVTLDGVTAFVNCEEIEST 55 (88)
Q Consensus 26 ~~d~~Whr~alsV~~~~VtL~~DC~~~~~~ 55 (88)
...+.||..++.-..+.+++|+|=+++.+.
T Consensus 209 ~~~~~fHtY~veW~~~~I~~yVDg~~~~t~ 238 (420)
T 1ups_A 209 DPTSEYHIYAMEWTPTALKFYYDNELFKVI 238 (420)
T ss_dssp CTTTSCEEEEEEECSSEEEEEETTEEEEEE
T ss_pred CCCCCCEEEEEEEECCEEEEEECCEEEEEE
Confidence 367889999999999999999999988654
No 71
>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin- system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A 3v0a_A* 3v0b_A 3v0c_A 3zus_A 3zur_A
Probab=34.84 E-value=1.5e+02 Score=26.04 Aligned_cols=50 Identities=8% Similarity=0.208 Sum_probs=36.2
Q ss_pred CCCceEEEEEEE-CCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecCCC
Q psy5411 28 TGKYFKFALKVT-LDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAGPI 80 (88)
Q Consensus 28 d~~Whr~alsV~-~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG~~ 80 (88)
.++||.++++|. -+...+|+|=+.+.+..+.-... ....-.+-+|--|..
T Consensus 1010 iNkW~fVTITndRlgna~IYINGkLi~~~~I~~l~n---I~~sd~Isfk~~g~n 1060 (1295)
T 2nyy_A 1010 INRWIFVTITNNRLNNSKIYINGRLIDQKPISNLGN---IHASNNIMFKLDGCR 1060 (1295)
T ss_dssp TTSCEEEEEEEETTSEEEEEETTEEEEEEECTTCCC---CCCCSEEEEEEESCC
T ss_pred cCceEEEEEEEcCCCceeEEECCEEeecceecccCC---cccCceEEEEeccCC
Confidence 499999999999 77779999999998887776542 233444444443433
No 72
>1uai_A Alginate lyase, polyguluronate lyase; jellyroll beta-sandwich; 1.20A {Corynebacterium SP} SCOP: b.29.1.18
Probab=32.55 E-value=51 Score=22.84 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=32.3
Q ss_pred CCCCceEEEEEEECCeEEEEECCccceeEEEecCCCceeeecCcEEEEeecC
Q psy5411 27 PTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDSASTLYLGQAG 78 (88)
Q Consensus 27 ~d~~Whr~alsV~~~~VtL~~DC~~~~~~~~~R~p~~l~~~~~~~l~iGqaG 78 (88)
.-|+|-++.|.|.++.+++++|=+...+.. ..-..+=|- +++| .|..
T Consensus 153 ~lg~~Fsy~I~v~~g~l~V~~ng~~~~~~~--~~~~~~YFK--AG~Y-~Q~n 199 (224)
T 1uai_A 153 KLNTVFEGKFVVSGGKIKVYYNGVLQTTIS--HTSSGNYFK--AGAY-TQAN 199 (224)
T ss_dssp CTTCCEEEEEEEETTEEEEEETTEEEEEEE--CCCSCBEEE--EEEE-ECCC
T ss_pred cCCCEEEEEEEECCCEEEEEEcCcEeeeec--CCCcceeEe--EEEe-cccC
Confidence 568999999999999999999977555433 222234454 4555 4543
No 73
>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*
Probab=31.77 E-value=52 Score=21.03 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=18.7
Q ss_pred CCCCceEEE-----EEEECCeEEEEECC
Q psy5411 27 PTGKYFKFA-----LKVTLDGVTAFVNC 49 (88)
Q Consensus 27 ~d~~Whr~a-----lsV~~~~VtL~~DC 49 (88)
.+|.|+.++ +.|.+|.||+..|-
T Consensus 55 ~~g~~~~~~v~gGf~ev~~~~vtIla~~ 82 (138)
T 1aqt_A 55 QHGHEEFIYLSGGILEVQPGNVTVLADT 82 (138)
T ss_dssp TTTEEEEEEESSEEEEEETTEEEEEESS
T ss_pred CCCcEEEEEEeCcEEEEECCEEEEEEee
Confidence 478899998 56899999998763
No 74
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=31.04 E-value=1e+02 Score=19.58 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=24.7
Q ss_pred eEEEEecCCCCccceeeeEEECCCCCCCceEEE---EEEEC--CeEEEEECC
Q psy5411 3 LTLLYTDVTKFSTTQPIASFLIPAPTGKYFKFA---LKVTL--DGVTAFVNC 49 (88)
Q Consensus 3 i~l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~a---lsV~~--~~VtL~~DC 49 (88)
+.|.|++.++......++.-.+ ..+.|.+|. +.+.. ..+.||+..
T Consensus 90 ~~l~~~~~~g~~~y~~i~~~~~--~~~~W~~L~G~~ft~~~~~~~~~lyve~ 139 (160)
T 1dyo_A 90 MKLQYVDGSGTQRYDTIDMKTV--GPNQWVHLYNPQYRIPSDATDMYVYVET 139 (160)
T ss_dssp EEEEEECTTSCEEEEEEEEEEE--CSSCCEEEEEEEEECCTTCEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEeeEEE--cCCccEEEECcEEEeCCCCCEEEEEEEC
Confidence 4566766663322223333333 478899986 44422 367778743
No 75
>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A
Probab=29.69 E-value=60 Score=20.60 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=18.2
Q ss_pred CCCCceEEEE-----EEECCeEEEEEC
Q psy5411 27 PTGKYFKFAL-----KVTLDGVTAFVN 48 (88)
Q Consensus 27 ~d~~Whr~al-----sV~~~~VtL~~D 48 (88)
.+|.|+.+++ .|.+|+||+..|
T Consensus 54 ~~~~~~~~~v~gGf~ev~~~~vtIla~ 80 (133)
T 2e5y_A 54 KGGKTQYIAVSGGFLEVRPDKVTILAQ 80 (133)
T ss_dssp ETTEEEEEEEEEEEEEEETTEEEEEES
T ss_pred ECCeEEEEEEcCeEEEEECCEEEEEEe
Confidence 4889999984 589999998876
No 76
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=28.87 E-value=18 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=20.2
Q ss_pred EEEEECCeEEEEECCccceeEEEe
Q psy5411 35 ALKVTLDGVTAFVNCEEIESTRVV 58 (88)
Q Consensus 35 alsV~~~~VtL~~DC~~~~~~~~~ 58 (88)
++.|.+++|+|-+||..+...|.+
T Consensus 121 ~lTvt~~~~~Lvf~l~~it~~PsD 144 (211)
T 2vrs_A 121 NLTVTSNVVLLTFDLSDITHIPSD 144 (211)
T ss_dssp EEEECSSEEEEEEEGGGEESCCSC
T ss_pred ceEecCCcEEEEEEhhhccCCccc
Confidence 678999999999999999766543
No 77
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2
Probab=28.18 E-value=70 Score=23.45 Aligned_cols=30 Identities=3% Similarity=0.080 Sum_probs=25.9
Q ss_pred CCCCceEEEEEE-ECCeEEEEECCccceeEE
Q psy5411 27 PTGKYFKFALKV-TLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 27 ~d~~Whr~alsV-~~~~VtL~~DC~~~~~~~ 56 (88)
+...||..+|.- ..+++++|||=+++.+..
T Consensus 225 ~~~dFHtY~veW~tp~~I~fyVDG~~v~t~~ 255 (346)
T 1o4z_A 225 WNKEFHRFGVYWRDPWHLEYYIDGVLVRTVS 255 (346)
T ss_dssp GGGSCEEEEEEEEETTEEEEEETTEEEEEEE
T ss_pred CcCCcEEEEEEEcCCCeEEEEECCEEEEEEc
Confidence 567899999998 799999999999886543
No 78
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius}
Probab=28.15 E-value=1.1e+02 Score=22.41 Aligned_cols=32 Identities=3% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCCCCceEEEEEE-ECCeEEEEECCccceeEE
Q psy5411 25 PAPTGKYFKFALKV-TLDGVTAFVNCEEIESTR 56 (88)
Q Consensus 25 ~~~d~~Whr~alsV-~~~~VtL~~DC~~~~~~~ 56 (88)
......||..+|.- ..+++++|+|=+++.+..
T Consensus 234 ~~~~~~fHtY~veW~t~~~I~~yVDg~~~~~~~ 266 (324)
T 4awd_A 234 DPSAEDFHTYGCWWVDANTVKFYYDGKYMYTIK 266 (324)
T ss_dssp CCTTTSCEEEEEEEEETTEEEEEETTEEEEEEC
T ss_pred CCCCCCcEEEEEEEccCCeEEEEECCEEEEEEe
Confidence 34778999999999 599999999999886654
No 79
>3zyp_A CIP1; metal binding protein, calcium-binding, CBM-containing, beta sandwich jelly roll, carbohydrate-binding; HET: NAG; 1.50A {Hypocrea jecorina}
Probab=26.34 E-value=72 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCCCCCceEEEEEEE-CCeEEEEECCcccee
Q psy5411 25 PAPTGKYFKFALKVT-LDGVTAFVNCEEIES 54 (88)
Q Consensus 25 ~~~d~~Whr~alsV~-~~~VtL~~DC~~~~~ 54 (88)
+...++||.|.+.|. .+.+.+++|=+++..
T Consensus 132 ~l~~g~W~cvE~~~~~~G~~~~W~DG~~v~~ 162 (218)
T 3zyp_A 132 TLPTGAFQCFEYHLGTDGTIETWLNGSLIPG 162 (218)
T ss_dssp CCCCSSCEEEEEEECSSSCEEEEETTEECGG
T ss_pred eecCCcEEEEEEEECCCCeEEEEECCEEeee
Confidence 557899999999885 457889999888743
No 80
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=25.04 E-value=51 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.0
Q ss_pred cCCCceeeec-CcEEEEeecCCCC
Q psy5411 59 RNPQELLFDS-ASTLYLGQAGPII 81 (88)
Q Consensus 59 R~p~~l~~~~-~~~l~iGqaG~~~ 81 (88)
|+|..+.+++ .+.||++..|+..
T Consensus 197 rnp~Gla~d~~~g~l~v~d~g~~~ 220 (354)
T 3a9g_A 197 RNPQGIDWHRASGVMVATEHGPVG 220 (354)
T ss_dssp SCCCEEEECTTTCCEEEEECCSSS
T ss_pred CCcceEEEeCCCCCEEEEecCCCC
Confidence 7888899998 7899999998764
No 81
>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A
Probab=24.24 E-value=71 Score=20.38 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.6
Q ss_pred CCCceEEE-----EEEECCeEEEEECC
Q psy5411 28 TGKYFKFA-----LKVTLDGVTAFVNC 49 (88)
Q Consensus 28 d~~Whr~a-----lsV~~~~VtL~~DC 49 (88)
++.|+.++ +.|.++.||+..|-
T Consensus 54 ~~~~~~~~v~gGf~ev~~~~vtIla~~ 80 (138)
T 2rq6_A 54 DREWVAIALMGGFAEVENNEVTILVNG 80 (138)
T ss_dssp SSCEEEEEECSEEEEECSSCEEEEESC
T ss_pred CCeEEEEEEcCcEEEEECCEEEEEEee
Confidence 78999988 46888888887763
No 82
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=23.89 E-value=91 Score=18.07 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=21.8
Q ss_pred eEEEEEEECCeEEEEECCccceeEEEec
Q psy5411 32 FKFALKVTLDGVTAFVNCEEIESTRVVR 59 (88)
Q Consensus 32 hr~alsV~~~~VtL~~DC~~~~~~~~~R 59 (88)
+=+-+.|+++.|+|+-|=...+-+.+.+
T Consensus 35 tGlVV~v~~d~v~v~SD~t~~Ei~V~~~ 62 (69)
T 2do3_A 35 TGLIVRVEENFVILFSDLTMHELKVLPR 62 (69)
T ss_dssp EEEEEEECSSCEEEEESSSCSEEEECTT
T ss_pred eEEEEEEeCCEEEEEeCCCCCEEEEEhH
Confidence 3577899999999999988666555544
No 83
>3lkm_A MHCK-A, myosin heavy chain kinase A; protein kinase-like fold, ATP-binding, nucleotide- binding, serine/threonine-protein kinase; HET: AMP; 1.60A {Dictyostelium discoideum} PDB: 3lla_A* 3lmi_A* 3lmh_A* 3pdt_A*
Probab=23.33 E-value=66 Score=23.76 Aligned_cols=44 Identities=9% Similarity=0.164 Sum_probs=25.7
Q ss_pred EEEecCCCCccceeeeEEECCCCCCCceEEEEEEECCeEEEEECC
Q psy5411 5 LLYTDVTKFSTTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNC 49 (88)
Q Consensus 5 l~Ytd~~~~~~s~~~asF~v~~~d~~Whr~alsV~~~~VtL~~DC 49 (88)
||+.+.. ...+..+..+..+..+++|++-.+.|+-+..-|==..
T Consensus 13 ~~~~~~~-~~~~e~ai~~~y~~~~~~W~~~~i~vk~e~~PFa~Ga 56 (307)
T 3lkm_A 13 LYFQGIS-SETGEMGILWEFDPIINKWIRLSMKLKVERKPFAEGA 56 (307)
T ss_dssp ----------CCEEEEEEEEETTTTEEEEEEEEEEECSSCSEECS
T ss_pred eeeeccC-CcCceeeEEEEEcCCCCeEEeeeEEEEecccccccch
Confidence 5565554 3345666777777789999999999986665444433
No 84
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A*
Probab=22.71 E-value=1.1e+02 Score=21.36 Aligned_cols=29 Identities=3% Similarity=0.106 Sum_probs=24.8
Q ss_pred CCCCceEEEEEEE-CCeEEEEECCccceeE
Q psy5411 27 PTGKYFKFALKVT-LDGVTAFVNCEEIEST 55 (88)
Q Consensus 27 ~d~~Whr~alsV~-~~~VtL~~DC~~~~~~ 55 (88)
....||..++.-. .+.+++|+|=+++.+.
T Consensus 182 ~~~~fH~Y~~eWt~~~~I~~yvDg~~~~t~ 211 (288)
T 1o4y_A 182 WRSAYHRYGCYWKDPFTLEYYIDGVKVRTV 211 (288)
T ss_dssp GGGSCEEEEEEEEETTEEEEEETTEEEEEE
T ss_pred ccCCCEEEEEEEeCCCeEEEEECCEEEEEE
Confidence 5678999999996 9999999998877544
No 85
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=22.67 E-value=40 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=11.6
Q ss_pred eeEEECCCCCCCceEEEEE
Q psy5411 19 IASFLIPAPTGKYFKFALK 37 (88)
Q Consensus 19 ~asF~v~~~d~~Whr~als 37 (88)
...|..+.+.|+|+-+|+.
T Consensus 5 ~~~fd~~~~~G~Wy~ia~~ 23 (160)
T 2hlv_A 5 EAEQNLSELSGPWRTVYIG 23 (160)
T ss_dssp ------CTTCBCCEEEEEE
T ss_pred CCCCCchhcceEeeEEEEE
Confidence 4568888899999999985
No 86
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=22.45 E-value=1.8e+02 Score=19.46 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=29.9
Q ss_pred CCCCceEEEEEEEC--CeEEEE-EC---Cc--cceeEEEecCCCceeeecCc-EEEEeecCC
Q psy5411 27 PTGKYFKFALKVTL--DGVTAF-VN---CE--EIESTRVVRNPQELLFDSAS-TLYLGQAGP 79 (88)
Q Consensus 27 ~d~~Whr~alsV~~--~~VtL~-~D---C~--~~~~~~~~R~p~~l~~~~~~-~l~iGqaG~ 79 (88)
.||+| +.++-.+ +.|.+| +| -+ .....+....|..+.|++.+ .||++..+.
T Consensus 268 pdg~~--l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 268 PDGKY--LYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp TTSSE--EEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTT
T ss_pred CCCCE--EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCC
Confidence 36665 5566655 677776 33 12 22222334467788888765 588887543
No 87
>3rsj_A BONT/F; clostridium botulinum type F, ganglioside binding site, GD1A; HET: NGA GAL SIA; 2.00A {Clostridium botulinum} PDB: 3fuq_A
Probab=20.18 E-value=1.7e+02 Score=22.62 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCCceEEEEEEE--CCeEEEEECCccceeEEEe
Q psy5411 28 TGKYFKFALKVT--LDGVTAFVNCEEIESTRVV 58 (88)
Q Consensus 28 d~~Whr~alsV~--~~~VtL~~DC~~~~~~~~~ 58 (88)
.++|+.+.+++. |++ .+|+|=+.+....++
T Consensus 140 in~W~hVTIT~drlg~~-~IYINGklv~~~~i~ 171 (413)
T 3rsj_A 140 INKWIFVTITNNRLGNS-RIYINGNLIDEKSIS 171 (413)
T ss_dssp TTSEEEEEEEECTTSEE-EEEETTEEEEEEECT
T ss_pred ccceEEEEEEecCCCCe-eEEECCEEecceehh
Confidence 399999999996 344 999999999988888
Done!