RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5411
         (88 letters)



>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 206

 Score = 33.9 bits (77), Expect = 9e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 14  STTQPIASFLIPAPTGKYFKFALKVTLDGVTAFVNCEEIESTRVVRNPQELLFDS---AS 70
                ++       TG++    L V  D    +++CE++E+  +    Q +        +
Sbjct: 109 GKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIA 168

Query: 71  TLYLGQAGPI--IKGALD 86
            L + + G     +G L 
Sbjct: 169 RLRIAKGGVNDNFQGVLQ 186


>d1by5a_ f.4.3.3 (A:) Ferric hydroxamate uptake receptor FhuA
           {Escherichia coli [TaxId: 562]}
          Length = 697

 Score = 24.4 bits (51), Expect = 2.4
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 8/42 (19%)

Query: 38  VTLDGV--------TAFVNCEEIESTRVVRNPQELLFDSAST 71
             L+G+         A ++   +E   ++R P  +L+  +S 
Sbjct: 87  NYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSP 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.390 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 298,341
Number of extensions: 11169
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 4
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)