BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5412
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 157 bits (398), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 157 bits (397), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 154 bits (389), Expect = 1e-38, Method: Composition-based stats.
Identities = 72/110 (65%), Positives = 86/110 (78%)
Query: 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVET 66
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQEN 63
Query: 67 GKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 64 GKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 120 bits (300), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/89 (65%), Positives = 72/89 (80%)
Query: 28 QAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDK 87
Q EWT +RLVWVP E GF AA ++ E + EVEL E+G+R+ +P+D IQ+MNPPKF K
Sbjct: 2 QVEWTARRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSK 61
Query: 88 VEDMADLTCLNEASVLHNIKDRYYSGLIY 116
EDMA+LTCLNEASVLHN+++RYYSGLIY
Sbjct: 62 AEDMAELTCLNEASVLHNLRERYYSGLIY 90
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D +DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++
Sbjct: 2 NIDFSDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 61 VADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 113
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D +DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++
Sbjct: 2 NIDFSDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 61 VADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 113
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D +DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++
Sbjct: 2 NIDFSDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 61 VADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 113
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 8 NDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETG 67
+DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++V
Sbjct: 1 SDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADS 59
Query: 68 KRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 60 STRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 108
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 114 bits (284), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 8 NDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETG 67
+DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++V
Sbjct: 2 SDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADS 60
Query: 68 KRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 61 STRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 109
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D NDPD +YL+VDR T A + K+ WVP +GF +A I+ G+ + V++
Sbjct: 2 NIDFNDPDFQYLAVDRKKMMKEQT-APFDGKKNCWVPDPKEGFASAEIQSSKGEEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ+MNPPKF+K+EDMA++T LNEASVL+N++ RY +GLIY
Sbjct: 61 VSDNSTRTVKKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIY 113
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D NDPD +YL+VDR T A + K+ WVP +GF +A I+ G+ + V++
Sbjct: 2 NIDFNDPDFQYLAVDRKKMMKEQT-APFDGKKNCWVPDPKEGFASAEIQSSKGEEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ+MNPPKF+K+EDMA++T LNEASVL+N++ RY +GLIY
Sbjct: 61 VSDNSTRTVKKDDIQQMNPPKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIY 113
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 72/112 (64%), Gaps = 1/112 (0%)
Query: 5 LDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELV 64
+D +DPDM++L + R + AT + K+ WVP + GFV A I+ GD V V+
Sbjct: 3 MDFSDPDMEFLCLTRQKLME-ATSIPFDGKKNCWVPDPDFGFVGAEIQSTKGDEVTVKTD 61
Query: 65 ETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
+T + VV KDDI + NPPKF+ DMA+LT LNEAS+LHN++ RY SG IY
Sbjct: 62 KTQETRVVKKDDIGQRNPPKFEMNMDMANLTFLNEASILHNLRSRYESGFIY 113
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 79.0 bits (193), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMAD 93
K+ V+VP + Q FV A I G V E E GK + V +D + + NPPKFDK+EDMA
Sbjct: 34 KKDVFVPDDKQEFVKAKIVSREGGKVTAE-TEYGKTVTVKEDQVMQQNPPKFDKIEDMAM 92
Query: 94 LTCLNEASVLHNIKDRYYSGLIY 116
LT L+E +VL+N+KDRY S +IY
Sbjct: 93 LTFLHEPAVLYNLKDRYGSWMIY 115
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMAD 93
K V+V H + FV I+ + G V V+ E G+ + V +D + MNPPK+DK+EDMA
Sbjct: 32 KSSVFVVHPKESFVKGTIQSKEGGKVTVK-TEGGETLTVKEDQVFSMNPPKYDKIEDMAM 90
Query: 94 LTCLNEASVLHNIKDRYYSGLIY 116
+T L+E +VL+N+K+RY + +IY
Sbjct: 91 MTHLHEPAVLYNLKERYAAWMIY 113
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTC 96
V+V H Q FV I+ G V V E G+ + V +D + MNPP +D +EDMA +T
Sbjct: 35 VFVVHPKQSFVXGTIQSXEGGXVTVX-TEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTH 93
Query: 97 LNEASVLHNIKDRYYSGLIY 116
L+E +VL+N+ +RY + +IY
Sbjct: 94 LHEPAVLYNLXERYAAWMIY 113
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTC 96
V+V H Q FV I+ G V V E G+ + V +D + MNPP +D +EDMA +T
Sbjct: 38 VFVVHPKQSFVXGTIQSXEGGXVTVX-TEGGETLTVKEDQVFSMNPPXYDXIEDMAMMTH 96
Query: 97 LNEASVLHNIKDRYYSGLIY 116
L+E +VL+N+ +RY + +IY
Sbjct: 97 LHEPAVLYNLXERYAAWMIY 116
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 32 TQKRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKV 88
+ KR +W P E + I E DS + V+ G+ V KDD + NP KFD V
Sbjct: 41 SDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGV 99
Query: 89 EDMADLTCLNEASVLHNIKDRYYSGLIY 116
EDM++L+ LNE +V HN++ RY LIY
Sbjct: 100 EDMSELSYLNEPAVFHNLRVRYNQDLIY 127
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 43 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 101
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 102 MSELSYLNEPAVFHNLRVRYNQDLIY 127
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 32 TQKRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKV 88
+ KR +W P E + I E DS + V+ G+ V KDD + NP KFD V
Sbjct: 30 SDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGV 88
Query: 89 EDMADLTCLNEASVLHNIKDRYYSGLIY 116
EDM++L+ LNE +V HN++ RY LIY
Sbjct: 89 EDMSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 32 TQKRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKV 88
+ KR +W P E + I E DS + V+ G+ V KDD + NP KFD V
Sbjct: 29 SDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGV 87
Query: 89 EDMADLTCLNEASVLHNIKDRYYSGLIY 116
EDM++L+ LNE +V HN++ RY LIY
Sbjct: 88 EDMSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 31 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 89
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 90 MSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 43 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 101
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 102 MSELSYLNEPAVFHNLRVRYNQDLIY 127
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 43 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 101
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 102 MSELSYLNEPAVFHNLRVRYNQDLIY 127
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 31 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 89
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 90 MSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 31 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 89
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 90 MSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 31 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 89
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 90 MSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 31 KRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 89
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 90 MSELSYLNEPAVFHNLRVRYNQDLIY 115
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + V+ G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPDERDSYECGEIVSETSDSFTFKTVD-GQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TSDGQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TSDGQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TSDGQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 34 KRLVWV---PHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVED 90
KR +W P E + I E DS + G+ V KDD + NP KFD VED
Sbjct: 32 KRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TSDGQDRQVKKDDANQRNPIKFDGVED 90
Query: 91 MADLTCLNEASVLHNIKDRYYSGLIY 116
M++L+ LNE +V HN++ RY LIY
Sbjct: 91 MSELSYLNEPAVFHNLRVRYNQDLIY 116
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 16 VWAPHPTDGFQVGNIVRRGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 75
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 76 YLNEATLLHNIKVRYSKDRIY 96
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 16 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 75
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 76 YLNEATLLHNIKVRYSKDRIY 96
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 3 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 62
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 63 YLNEATLLHNIKVRYSKDRIY 83
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 4 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 63
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 64 YLNEATLLHNIKVRYSKDRIY 84
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 6 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 66 YLNEATLLHNIKVRYSKDRIY 86
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 6 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 66 YLNEATLLHNIKVRYSKDRIY 86
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 7 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 67 YLNEATLLHNIKVRYSKDRIY 87
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 7 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 67 YLNEATLLHNIKVRYSKDRIY 87
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 6 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 66 YLNEATLLHNIKVRYSKDRIY 86
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 6 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 66 YLNEATLLHNIKVRYSKDRIY 86
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 7 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 66
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 67 YLNEATLLHNIKVRYSKDRIY 87
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 37 VWVPHENQGFVAAGIKGELGDSVEVE-LVETGKRIVVPKDDIQKMNPPKFDKVEDMADLT 95
VW PH GF I DS+ +E L + GK + + + VED L
Sbjct: 6 VWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLM 65
Query: 96 CLNEASVLHNIKDRYYSGLIY 116
LNEA++LHNIK RY IY
Sbjct: 66 YLNEATLLHNIKVRYSKDRIY 86
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 31 WTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMNPPKFD-- 86
+T+ VW+P + + +A + + GD V +E GK + D K PP +
Sbjct: 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPD 66
Query: 87 ---KVEDMADLTCLNEASVLHNIKDRYY-SGLIY 116
D+ L+ L+E +VLHN+K R+ S LIY
Sbjct: 67 ILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIY 100
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 31 WTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMNPPKFD-- 86
+T+ VW+P + + +A + + GD V +E GK + D K PP +
Sbjct: 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPD 66
Query: 87 ---KVEDMADLTCLNEASVLHNIKDRYY-SGLIY 116
D+ L+ L+E +VLHN+K R+ S LIY
Sbjct: 67 ILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIY 100
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 31 WTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMNPPKFD-- 86
+T+ VW+P + + +A + + GD V +E GK + D K PP +
Sbjct: 7 YTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPLRNPD 66
Query: 87 ---KVEDMADLTCLNEASVLHNIKDRYY-SGLIY 116
D+ L+ L+E +VLHN+K R+ S LIY
Sbjct: 67 ILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIY 100
>pdb|2EP5|A Chain A, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|B Chain B, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|C Chain C, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
pdb|2EP5|D Chain D, Structural Study Of Project Id St1242 From Sulfolobus
Tokodaii Strain7
Length = 350
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 41 HENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNP 82
H++ V + + EL +S+E+ELV+ GK IVV +M+P
Sbjct: 75 HKDVDVVLSALPNELAESIELELVKNGK-IVVSNASPFRMDP 115
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 8/55 (14%)
Query: 31 WTQKRLVWVPHENQGFVAAGIKG----ELGDSVEVELVETGKRIVV---PKDDIQ 78
W ++ ++W H+ F A G + ++G +V VEL +T K + + PK D++
Sbjct: 8 WIKEEIIWSEHKCIRFAAGGYEALIIPDVGGNV-VELKDTNKGVTILRTPKKDLK 61
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 31 WTQKRLVWVPH-ENQGFVAAGIKGELGDSVEVELVETGKRIVV 72
+ Q++ V+ H E QG+ GI GE +V VE V I+V
Sbjct: 309 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIV 351
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,818,162
Number of Sequences: 62578
Number of extensions: 141885
Number of successful extensions: 347
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 72
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)