Query psy5412
Match_columns 116
No_of_seqs 123 out of 1126
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 16:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161|consensus 99.9 2.2E-24 4.7E-29 194.3 6.4 109 7-116 4-112 (1930)
2 PTZ00014 myosin-A; Provisional 99.7 1E-17 2.3E-22 143.7 9.2 104 13-116 12-126 (821)
3 COG5022 Myosin heavy chain [Cy 99.5 1.5E-14 3.3E-19 127.8 4.9 89 28-116 3-96 (1463)
4 KOG0163|consensus 99.3 2.1E-12 4.6E-17 109.4 5.9 85 32-116 2-87 (1259)
5 PF02736 Myosin_N: Myosin N-te 99.1 1.6E-10 3.5E-15 65.4 5.4 41 34-75 1-41 (42)
6 KOG4229|consensus 95.7 0.0057 1.2E-07 54.8 1.9 38 79-116 54-91 (1062)
7 KOG0162|consensus 95.7 0.0069 1.5E-07 52.6 2.2 33 84-116 16-48 (1106)
8 smart00333 TUDOR Tudor domain. 94.3 0.23 5.1E-06 28.5 5.7 53 30-82 2-55 (57)
9 smart00743 Agenet Tudor-like d 92.7 0.66 1.4E-05 27.2 5.8 53 30-82 2-58 (61)
10 cd04508 TUDOR Tudor domains ar 92.6 0.44 9.4E-06 26.4 4.7 44 34-77 1-46 (48)
11 PF09465 LBR_tudor: Lamin-B re 91.6 1.2 2.6E-05 26.5 5.7 47 29-77 4-54 (55)
12 PF00855 PWWP: PWWP domain; I 87.4 2.6 5.6E-05 26.0 5.4 51 31-81 1-59 (86)
13 PF12073 DUF3553: Protein of u 84.2 3.1 6.6E-05 24.4 4.2 32 38-69 6-38 (52)
14 cd05162 PWWP The PWWP domain, 83.1 4.7 0.0001 25.2 5.2 51 31-81 1-62 (87)
15 smart00293 PWWP domain with co 82.2 6.2 0.00014 23.4 5.2 49 31-79 1-61 (63)
16 cd05835 Dnmt3b_related The PWW 81.0 3 6.4E-05 26.6 3.7 50 31-80 1-58 (87)
17 PF00567 TUDOR: Tudor domain; 78.3 11 0.00024 23.8 5.8 50 32-81 53-104 (121)
18 cd05834 HDGF_related The PWWP 75.6 9.1 0.0002 24.2 4.7 53 30-82 2-59 (83)
19 PF11717 Tudor-knot: RNA bindi 72.5 5.8 0.00013 23.0 3.0 25 31-55 1-25 (55)
20 cd05841 BS69_related The PWWP 67.0 17 0.00037 23.2 4.5 52 31-82 7-59 (83)
21 cd05840 SPBC215_ISWI_like The 66.2 19 0.00042 23.2 4.8 51 31-81 1-65 (93)
22 cd05836 N_Pac_NP60 The PWWP do 64.5 22 0.00048 22.5 4.7 50 31-80 1-59 (86)
23 cd06080 MUM1_like Mutated mela 60.9 34 0.00074 21.6 5.0 51 31-81 1-54 (80)
24 PF15057 DUF4537: Domain of un 58.5 17 0.00037 24.7 3.6 52 28-80 53-112 (124)
25 PF03983 SHD1: SLA1 homology d 58.1 42 0.00092 20.8 6.0 46 32-78 9-54 (70)
26 PF06003 SMN: Survival motor n 57.3 43 0.00094 25.7 6.0 53 28-80 66-121 (264)
27 PF07076 DUF1344: Protein of u 50.4 38 0.00083 20.5 3.8 28 47-75 5-32 (61)
28 PF08141 SspH: Small acid-solu 45.9 50 0.0011 19.7 3.8 23 19-41 6-29 (58)
29 KOG2185|consensus 45.1 19 0.00042 29.8 2.5 39 29-67 179-217 (486)
30 PF05641 Agenet: Agenet domain 44.9 67 0.0014 19.1 4.9 53 31-83 1-66 (68)
31 PF03242 LEA_3: Late embryogen 43.7 11 0.00024 24.7 0.7 16 32-47 58-73 (93)
32 cd05837 MSH6_like The PWWP dom 42.0 71 0.0015 21.1 4.5 53 30-82 2-69 (110)
33 PF08169 RBB1NT: RBB1NT (NUC16 36.7 85 0.0018 20.7 4.1 49 33-81 8-66 (96)
34 PRK14639 hypothetical protein; 36.7 79 0.0017 21.9 4.2 48 32-79 86-133 (140)
35 PF08605 Rad9_Rad53_bind: Fung 36.3 86 0.0019 21.6 4.3 42 34-78 13-56 (131)
36 PF12621 DUF3779: Phosphate me 32.2 21 0.00046 23.0 0.7 25 31-55 42-66 (95)
37 cd05838 WHSC1_related The PWWP 30.5 1.5E+02 0.0033 19.0 4.9 49 32-80 2-62 (95)
38 PRK03348 DNA polymerase IV; Pr 30.3 83 0.0018 25.9 4.0 50 30-83 389-444 (454)
39 PF09038 53-BP1_Tudor: Tumour 26.2 2.2E+02 0.0048 19.5 6.7 50 33-83 5-56 (122)
40 PF07039 DUF1325: SGF29 tudor- 25.2 1.8E+02 0.0039 19.8 4.4 39 41-79 14-57 (130)
41 PF02484 Rhabdo_NV: Rhabdoviru 24.7 27 0.00059 23.0 0.2 20 29-48 28-47 (111)
42 PF14237 DUF4339: Domain of un 24.6 25 0.00054 19.2 0.0 31 17-48 14-44 (45)
43 PF09851 SHOCT: Short C-termin 23.5 76 0.0016 16.1 1.8 14 102-115 4-17 (31)
44 PRK00587 hypothetical protein; 20.5 1E+02 0.0023 20.2 2.3 21 55-75 33-53 (99)
No 1
>KOG0161|consensus
Probab=99.90 E-value=2.2e-24 Score=194.29 Aligned_cols=109 Identities=57% Similarity=0.859 Sum_probs=99.1
Q ss_pred CCCccccccccchhhccCcccccccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCCCCCcC
Q psy5412 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFD 86 (116)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~ 86 (116)
..+++++||+.+++++... ++.+|+++.+|||||++++|+.|.|++..|++|+|...++|..+.|+.+++++||||+++
T Consensus 4 ~~~~~~~~lr~~~~~~~~~-~~~~~d~kk~vWvpd~~e~fv~~~i~~~~~~~v~v~~~~~~~~~~v~~~~v~~~NPPkfd 82 (1930)
T KOG0161|consen 4 EKDPGWKYLRVSREERLDA-QSRPFDSKKWVWVPDPKEGFVKAEIKSEEGEKVTVETEEGGTLTQVKEDDVQKMNPPKFD 82 (1930)
T ss_pred cccccchhhcccHHHhhcc-cccchhhcceeeecCCCCCeeeeeeeccCCCceEEEEcCCceeEEecHHHcCcCCCCCcc
Confidence 4678899999999998764 569999999999999999999999999987778888644555555999999999999999
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 87 KVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 87 ~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
.++||++|+|||||||||||+.||.+++||
T Consensus 83 k~eDMa~LT~lNeasVL~nL~~RY~~~lIy 112 (1930)
T KOG0161|consen 83 KVEDMAELTFLNEASVLHNLKQRYASDLIY 112 (1930)
T ss_pred ccccHHHhcccChHHHHhhHHHHHHhChHH
Confidence 999999999999999999999999999998
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.73 E-value=1e-17 Score=143.70 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=85.1
Q ss_pred cccccchhhccCcccccccccceeeee-------eCCCCCeeeeEEe-eecCCeEEEEEe--cCCcEEEEeCCCcccCCC
Q psy5412 13 KYLSVDRNAFNDPATQAEWTQKRLVWV-------PHENQGFVAAGIK-GELGDSVEVELV--ETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~~g~~vWv-------~d~~~~~v~a~V~-~~~~~~~~v~~~--~~g~~~~v~~~~~~~~np 82 (116)
+.|........-...+..+..|..||+ +|++++|+.|+|+ +..+++++|+.. ++|++++++.++++++||
T Consensus 12 ~~~~~~~s~~~~~~~~~~~~~g~~vw~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~n~ 91 (821)
T PTZ00014 12 NKLFRRNSNVEAFDKSGNVLKGFYVWTDKAPAVKEDPDLMFAKCLVLPGSTGEKLTLKQIDPPTNSTFEVKPEHAFNANS 91 (821)
T ss_pred ccceecccceeccccccccccCCeEEeeCCCCCCCCchhheeeEEEEEecCCCEEEEEEecCCCCcEEEeeHHHhhhcCC
Confidence 334333333322234566778889998 6789999999999 778889988742 468999999999999999
Q ss_pred CC-cCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 83 PK-FDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 83 ~~-~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
+. ..+++||+.|+|||||+|||||+.||.+++||
T Consensus 92 ~~~~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IY 126 (821)
T PTZ00014 92 QIDPMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIY 126 (821)
T ss_pred CCCcCCcchhhhCCCCCHHHHHHHHHHHHcCCCCe
Confidence 87 57899999999999999999999999999998
No 3
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.50 E-value=1.5e-14 Score=127.77 Aligned_cols=89 Identities=36% Similarity=0.612 Sum_probs=70.8
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEe-cCCcEEEEeCCCcc--cCCCCCcCCccccccCCCCChHHH
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELV-ETGKRIVVPKDDIQ--KMNPPKFDKVEDMADLTCLNEASV 102 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~-~~g~~~~v~~~~~~--~~np~~~~~vdDl~~L~~LnEasI 102 (116)
...|+.|..||+|+.+.+|+.+.+.+.. ++.++.... .+|....++.+.+. ..++|++++++||+.|++||||+|
T Consensus 3 ~~~~~~g~~~w~p~~e~~Wi~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~P~~~~vdDLt~LSyLNEpsV 82 (1463)
T COG5022 3 TTNAEVGSGCWIPDEEKGWIWAEIIKEAFNKGKVTEEGKKEDGESVSVKKKVLGNDRIKLPKFDGVDDLTELSYLNEPAV 82 (1463)
T ss_pred ccccccCceeeeeccccceeeeeechhhhhccccccchhhccCcccceeehhcccccccCccccCchhhhhhhccCcHHH
Confidence 4568999999999999999999998864 344443322 35555556655443 345778999999999999999999
Q ss_pred HHHHHHHhhcCCCC
Q psy5412 103 LHNIKDRYYSGLIY 116 (116)
Q Consensus 103 L~nLr~Ry~~~~IY 116 (116)
||||.+||.++.||
T Consensus 83 l~nL~kRY~n~~IY 96 (1463)
T COG5022 83 LHNLEKRYNNGQIY 96 (1463)
T ss_pred HHHHHHHhhcCcee
Confidence 99999999999999
No 4
>KOG0163|consensus
Probab=99.32 E-value=2.1e-12 Score=109.37 Aligned_cols=85 Identities=32% Similarity=0.522 Sum_probs=75.5
Q ss_pred ccceeeeeeCCCCCeeeeEEeeecCCeEEEEEe-cCCcEEEEeCCCcccCCCCCcCCccccccCCCCChHHHHHHHHHHh
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGELGDSVEVELV-ETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRY 110 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~-~~g~~~~v~~~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry 110 (116)
+.|..||++|+.+||+.|+|.....+..+++.. ..|.+++.-.++++++.......++|-++|.|||||.+|+|++.||
T Consensus 2 e~gr~VWi~d~tdGf~~~rI~di~~~~ftl~~~d~k~~t~~~~~edv~a~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY 81 (1259)
T KOG0163|consen 2 EDGRLVWIRDATDGFIAGRITDIGAKGFTLTPLDRKGPTVTRHFEDVHACEEDSPKDVEDNCELMHLNEATLLNNIKLRY 81 (1259)
T ss_pred CCCceEeecccccchhheeeeeecCCceEEeecccCCcceeehhhhccccccccccccccccceeeccHHHHhhhhhhhh
Confidence 468899999999999999999998888999754 4577888888999988555557899999999999999999999999
Q ss_pred hcCCCC
Q psy5412 111 YSGLIY 116 (116)
Q Consensus 111 ~~~~IY 116 (116)
.++.||
T Consensus 82 ~k~kIY 87 (1259)
T KOG0163|consen 82 YKDKIY 87 (1259)
T ss_pred ccCchh
Confidence 999998
No 5
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=99.13 E-value=1.6e-10 Score=65.40 Aligned_cols=41 Identities=49% Similarity=0.813 Sum_probs=37.0
Q ss_pred ceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCC
Q psy5412 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKD 75 (116)
Q Consensus 34 g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~ 75 (116)
+.+|||||++++|+.|+|++..+++++|++ .+|+.++++.+
T Consensus 1 K~~vWvpD~~egfv~g~I~~~~g~~vtV~~-~~G~~~tv~~d 41 (42)
T PF02736_consen 1 KKWVWVPDPKEGFVKGEIIEEEGDKVTVKT-EDGKEVTVKKD 41 (42)
T ss_dssp TTEEEEEESSSSEEEEEEEEEESSEEEEEE-TTTEEEEEEGG
T ss_pred CCEEEEeCCcccEEEEEEEEEcCCEEEEEE-CCCCEEEeCCC
Confidence 468999999999999999999999999997 56999998765
No 6
>KOG4229|consensus
Probab=95.70 E-value=0.0057 Score=54.82 Aligned_cols=38 Identities=39% Similarity=0.660 Sum_probs=34.6
Q ss_pred cCCCCCcCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 79 KMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 79 ~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
.++++...+++||++|.+++|+.+++||+.||..+.||
T Consensus 54 ~~~~~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy 91 (1062)
T KOG4229|consen 54 ALHRPQVEDVEDLAQLEDLSEATILENLLVRYKRNPIY 91 (1062)
T ss_pred cccccccccHHHHhhccccchhhhhHHHHHHHccCCce
Confidence 34566778999999999999999999999999999998
No 7
>KOG0162|consensus
Probab=95.66 E-value=0.0069 Score=52.60 Aligned_cols=33 Identities=36% Similarity=0.597 Sum_probs=30.8
Q ss_pred CcCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 84 KFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 84 ~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
+-.+++||+-|+-+.|-+|..||+.||+.+.||
T Consensus 16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~If 48 (1106)
T KOG0162|consen 16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIF 48 (1106)
T ss_pred eeccccceeehhhccHHHHHHHHHHHhhcCceE
Confidence 346999999999999999999999999999997
No 8
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=94.34 E-value=0.23 Score=28.53 Aligned_cols=53 Identities=23% Similarity=0.263 Sum_probs=39.8
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
.|..|+.|=++..+..|-.|+|++..+ +.+.|...+.|...+++.+++.++.+
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~~~~~V~f~D~G~~~~v~~~~l~~l~~ 55 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGEQLYEVFFIDYGNEEVVPPSDLRPLPE 55 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCCCEEEEEEECCCccEEEeHHHeecCCC
Confidence 356677766665467899999999877 78888876779888888777766543
No 9
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=92.73 E-value=0.66 Score=27.19 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred ccccceeeeeeC-CCCCeeeeEEeeecC-CeEEEEEec--CCcEEEEeCCCcccCCC
Q psy5412 30 EWTQKRLVWVPH-ENQGFVAAGIKGELG-DSVEVELVE--TGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 30 ~~~~g~~vWv~d-~~~~~v~a~V~~~~~-~~~~v~~~~--~g~~~~v~~~~~~~~np 82 (116)
.|..|+.|-+.. .+.+|-.|.|.+..+ +++.|.... .|...++...++-+..+
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~ 58 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLGDGKYLVRYLTESEPLKETVDWSDLRPHPP 58 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCcccEEEEeHHHcccCCC
Confidence 467888877764 367899999999876 788888766 56677777776666543
No 10
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=92.58 E-value=0.44 Score=26.40 Aligned_cols=44 Identities=30% Similarity=0.352 Sum_probs=31.2
Q ss_pred ceeeeeeCC-CCCeeeeEEeeec-CCeEEEEEecCCcEEEEeCCCc
Q psy5412 34 KRLVWVPHE-NQGFVAAGIKGEL-GDSVEVELVETGKRIVVPKDDI 77 (116)
Q Consensus 34 g~~vWv~d~-~~~~v~a~V~~~~-~~~~~v~~~~~g~~~~v~~~~~ 77 (116)
|+.|-++.+ +..|-.|+|++.. ++.+.|...+.|....++.+++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~~~~~~V~f~DyG~~~~v~~~~l 46 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDL 46 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECCCCcEEEEEEcCCCcEEEeHHHc
Confidence 345556554 3789999999987 7788888767787766655443
No 11
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=91.55 E-value=1.2 Score=26.48 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=32.2
Q ss_pred cccccceee--eeeCCCCCeeeeEEeee--cCCeEEEEEecCCcEEEEeCCCc
Q psy5412 29 AEWTQKRLV--WVPHENQGFVAAGIKGE--LGDSVEVELVETGKRIVVPKDDI 77 (116)
Q Consensus 29 ~~~~~g~~v--Wv~d~~~~~v~a~V~~~--~~~~~~v~~~~~g~~~~v~~~~~ 77 (116)
..|..|..| |=|. ...|-.|+|++. ..+..+|.. .||.+++++..++
T Consensus 4 ~k~~~Ge~V~~rWP~-s~lYYe~kV~~~d~~~~~y~V~Y-~DGtel~lke~di 54 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPG-SSLYYEGKVLSYDSKSDRYTVLY-EDGTELELKENDI 54 (55)
T ss_dssp SSS-SS-EEEEE-TT-TS-EEEEEEEEEETTTTEEEEEE-TTS-EEEEECCCE
T ss_pred ccccCCCEEEEECCC-CCcEEEEEEEEecccCceEEEEE-cCCCEEEeccccc
Confidence 457778764 5565 678999999995 467888875 8999999987764
No 12
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=87.40 E-value=2.6 Score=26.05 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=37.4
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec--------CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL--------GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~--------~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
|..|+.||..-..--|=||.|.... ++.+.|....+.+.-.++.+++.+..
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~ 59 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFS 59 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChh
Confidence 6789999999878889999998752 45777776666666667766666543
No 13
>PF12073 DUF3553: Protein of unknown function (DUF3553); InterPro: IPR021938 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 60 amino acids in length. This protein has two conserved sequence motifs: GQVQS and TVNF.
Probab=84.18 E-value=3.1 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=24.8
Q ss_pred eeeCCC-CCeeeeEEeeecCCeEEEEEecCCcE
Q psy5412 38 WVPHEN-QGFVAAGIKGELGDSVEVELVETGKR 69 (116)
Q Consensus 38 Wv~d~~-~~~v~a~V~~~~~~~~~v~~~~~g~~ 69 (116)
+|.+|+ --|-.++|+|..++++||...+-|+.
T Consensus 6 ~VrHP~~pdWG~GqVqS~i~~rvTVnF~~aGK~ 38 (52)
T PF12073_consen 6 LVRHPDHPDWGIGQVQSNIGGRVTVNFEHAGKK 38 (52)
T ss_pred EEeCCCCCCCcceEEEEecCCeEEEeeccCCeE
Confidence 455554 35999999999999999987666753
No 14
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=83.07 E-value=4.7 Score=25.24 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=36.4
Q ss_pred cccceeeeeeCCCCCeeeeEEeeecC-----------CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGELG-----------DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~~-----------~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
|..|+.||..-...-|=+|.|.+... +.+.|...++.+.-.++.+++.+..
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~ 62 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFT 62 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeecc
Confidence 56799999998888889999987532 4566665565556666666665543
No 15
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=82.22 E-value=6.2 Score=23.40 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=33.5
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec------------CCeEEEEEecCCcEEEEeCCCccc
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL------------GDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~------------~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
|..|+.||.+-..--|=+|.|.... .+.+.|....++..-.++.+++.+
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p 61 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFP 61 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceee
Confidence 5679999999888888899988743 235556554555555566655543
No 16
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=81.03 E-value=3 Score=26.59 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred cccceeeeeeCCCCCeeeeEEeeecC--------CeEEEEEecCCcEEEEeCCCcccC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGELG--------DSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~~--------~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
|..|+.||..-..-.|=||+|.+... +++.|.-..+++.-.++.+++.+.
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~~a~v~~~~l~pf 58 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGTFSEVSVDKLSPF 58 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCCEeEECHHHCcCh
Confidence 56899999998888899999987532 346666556666666666666553
No 17
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=78.30 E-value=11 Score=23.79 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=36.1
Q ss_pred ccce-eeeeeCCCCCeeeeEE-eeecCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 32 TQKR-LVWVPHENQGFVAAGI-KGELGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 32 ~~g~-~vWv~d~~~~~v~a~V-~~~~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
..|. .+-+...+..|..|+| ....++.+.|...+.|.+..++..++.+..
T Consensus 53 ~~~~~~~~~~~~~~~w~Ra~I~~~~~~~~~~V~~iD~G~~~~v~~~~l~~l~ 104 (121)
T PF00567_consen 53 NPGEGCLCVVSEDGRWYRAVITVDIDENQYKVFLIDYGNTEKVSASDLRPLP 104 (121)
T ss_dssp -TTEEEEEEETTTSEEEEEEEEEEECTTEEEEEETTTTEEEEEEGGGEEE--
T ss_pred ccCCEEEEEEecCCceeeEEEEEecccceeEEEEEecCceEEEcHHHhhhhC
Confidence 3443 3334455779999999 666788999998899999889888876653
No 18
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=75.56 E-value=9.1 Score=24.19 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeec-----CCeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGEL-----GDSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~-----~~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
.|..|+.||-.-..--|=+|+|.+.. ..++.|....++..-.+..+++.+...
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~ 59 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTE 59 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCEeEECHHHceeccc
Confidence 47889999999877777799998865 467777766777777777777766543
No 19
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=72.50 E-value=5.8 Score=22.98 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=20.3
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL 55 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~ 55 (116)
|..|.+|++.+....|-.|+|++..
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r 25 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIR 25 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEE
Confidence 4689999999978889999998863
No 20
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=66.96 E-value=17 Score=23.20 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=41.3
Q ss_pred cccceeeeeeCCCCCeeeeEEeeecCCeEEEEEec-CCcEEEEeCCCcccCCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVE-TGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~-~g~~~~v~~~~~~~~np 82 (116)
...++.||-.-..--|=+|+|+...++++.|.... ..+.-.|+.+++.+.+.
T Consensus 7 ~~p~dLVwAK~kGyp~WPAkV~~~~~~~~~V~FFG~t~~~a~v~~~~i~~~~~ 59 (83)
T cd05841 7 RPPHELVWAKLKGFPYWPAKVMRVEDNQVDVRFFGGQHDRAWIPSNNIQPIST 59 (83)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeecCCCeEEEEEcCCCCCeEEEehHHeeehhh
Confidence 34678999998777788999999888899998655 56677788888777654
No 21
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=66.24 E-value=19 Score=23.19 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=36.4
Q ss_pred cccceeeeeeCCCCCeeeeEEeee--------------cCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGE--------------LGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~--------------~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
|..|+.||..-..--|=+|.|... ..+.+.|....+++.-.+...++.+..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~~~~Wv~~~~l~pl~ 65 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDGDYYWVPNKDLKPLT 65 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCCcEEEEChhhcccCC
Confidence 567999999987777888998762 234677776666766777776666543
No 22
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=64.53 E-value=22 Score=22.50 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=35.2
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec---------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL---------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~---------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
|..|+.||-.=..--|=+|+|.+.. .+.+.|....+++.-.+..+++.+.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~~wv~~~~l~pF 59 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPY 59 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCEEEECHHhCeec
Confidence 5679999999877777799998631 2456666556666666777766554
No 23
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=60.87 E-value=34 Score=21.62 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=34.9
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCC-cEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETG-KRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g-~~~~v~~~~~~~~n 81 (116)
|..|+.||-.-..--|=+|+|.+.. ..++.|...+++ +...+..+.+.+.+
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~~~k~~V~FfG~~~~~a~~~~~~l~p~~ 54 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRKKQKARVNFIGDNMQSEKKGIRVVKRWL 54 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCCCCEEEEEEeCCCCceeccchhhccccc
Confidence 5689999999878888899998764 456777765666 33334444554443
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=58.48 E-value=17 Score=24.67 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=36.7
Q ss_pred ccccccceeeeeeCC--CCCeeeeEEee------ecCCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 28 QAEWTQKRLVWVPHE--NQGFVAAGIKG------ELGDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~--~~~~v~a~V~~------~~~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
..+...|++|-.+.+ ...|.+|+|++ ..+..++|.. -+|+...+....+...
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f-~ng~~~~vp~~~~~~I 112 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRF-YNGKTAKVPRGEVIWI 112 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEE-ECCCCCccchhhEEEC
Confidence 356678888888764 55699999995 4566788875 6777666666655444
No 25
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=58.12 E-value=42 Score=20.77 Aligned_cols=46 Identities=22% Similarity=0.334 Sum_probs=31.3
Q ss_pred ccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcc
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~ 78 (116)
....+.|......-=+.|+.+...++++.+.. .+|..+.|..+.+.
T Consensus 9 ~~~~RtWtD~tG~f~VeA~fv~~~dgkV~L~k-~nG~~i~VP~~kLS 54 (70)
T PF03983_consen 9 PSKTRTWTDRTGKFKVEAEFVGVNDGKVHLHK-TNGVKIAVPLEKLS 54 (70)
T ss_dssp ---SEEEEBSSS--EEEEEEEEEETTEEEEE--TTS-EEEEETTSB-
T ss_pred CCcceEEEeCCCCEEEEEEEEEeeCCEEEEEe-cCCeEEEeEhHHcC
Confidence 34568999874444567999999999999985 79998888776653
No 26
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=57.31 E-value=43 Score=25.68 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=34.6
Q ss_pred ccccccceeeeeeC-CCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 28 QAEWTQKRLVWVPH-ENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 28 ~~~~~~g~~vWv~d-~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
...|.+|++|=..- .+..|-.|+|.+.. +++++|+....|..-++...+|.+.
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~~~~V~f~gYgn~e~v~l~dL~~~ 121 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESIDEEDGTCVVVFTGYGNEEEVNLSDLKPS 121 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEEET
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEcccCCeEeeehhhhccc
Confidence 35799999987764 34569999999976 4678887767777666666666554
No 27
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=50.39 E-value=38 Score=20.46 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=21.8
Q ss_pred eeeEEeeecCCeEEEEEecCCcEEEEeCC
Q psy5412 47 VAAGIKGELGDSVEVELVETGKRIVVPKD 75 (116)
Q Consensus 47 v~a~V~~~~~~~~~v~~~~~g~~~~v~~~ 75 (116)
+.|.|.+.+....++++ +||+...++.+
T Consensus 5 veG~I~~id~~~~titL-dDGksy~lp~e 32 (61)
T PF07076_consen 5 VEGTIKSIDPETMTITL-DDGKSYKLPEE 32 (61)
T ss_pred ceEEEEEEcCCceEEEe-cCCCEEECCCc
Confidence 56788888888888886 89988776543
No 28
>PF08141 SspH: Small acid-soluble spore protein H family; InterPro: IPR012610 This family consists of the small acid-soluble spore proteins (SASP) of the H type (sspH). SspH are unique to spores of Bacillus subtilis and are expressed only in the forespore compartment during sporulation of this organism. The sspH genes are monocistronic and are recognised by the forespore-specific sigma factor for RNA polymerase - sigma-G. The specific role of this protein is unclear but is thought to play a role in sporulation under conditions different from that of the common laboratory tests of spore properties [].; GO: 0030436 asexual sporulation, 0042601 endospore-forming forespore
Probab=45.86 E-value=50 Score=19.65 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=14.8
Q ss_pred hhhccCcccc-cccccceeeeeeC
Q psy5412 19 RNAFNDPATQ-AEWTQKRLVWVPH 41 (116)
Q Consensus 19 ~~~~~~~~~~-~~~~~g~~vWv~d 41 (116)
++|+...... .....|..|||.+
T Consensus 6 AkeI~~S~~~i~V~y~G~pV~Ie~ 29 (58)
T PF08141_consen 6 AKEIAESPDMIEVTYNGVPVWIEH 29 (58)
T ss_pred HHHHHcCCceEEEEECCEEEEEEE
Confidence 3555333333 4677899999987
No 29
>KOG2185|consensus
Probab=45.08 E-value=19 Score=29.75 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=30.9
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETG 67 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g 67 (116)
.....|.+||...+...|-.|+|.+.+.+..+|++.-.|
T Consensus 179 s~L~~gs~vlak~~sdiWh~ari~~vd~~~q~vkv~~~g 217 (486)
T KOG2185|consen 179 SQLMVGSKVLAKSGSDIWHKARIESVDDELQVVKVVFRG 217 (486)
T ss_pred HHHhhcCeeeeeccchhhhhhheeeeccceeEEEEEecc
Confidence 334678999999999999999999988876766654333
No 30
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=44.91 E-value=67 Score=19.13 Aligned_cols=53 Identities=26% Similarity=0.331 Sum_probs=26.7
Q ss_pred cccceeeeeeCC----CCCeeeeEEeeecCC-eEEEEEe----cCCc----EEEEeCCCcccCCCC
Q psy5412 31 WTQKRLVWVPHE----NQGFVAAGIKGELGD-SVEVELV----ETGK----RIVVPKDDIQKMNPP 83 (116)
Q Consensus 31 ~~~g~~vWv~d~----~~~~v~a~V~~~~~~-~~~v~~~----~~g~----~~~v~~~~~~~~np~ 83 (116)
|..|+.|=|... ...|..|+|++..+. ++.|+.. +++. .-+|+...+-|+.|+
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 345555555432 346999999998877 8888852 1222 334555566665553
No 31
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=43.73 E-value=11 Score=24.66 Aligned_cols=16 Identities=19% Similarity=0.740 Sum_probs=12.6
Q ss_pred ccceeeeeeCCCCCee
Q psy5412 32 TQKRLVWVPHENQGFV 47 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v 47 (116)
...+..|+|||..||-
T Consensus 58 ~~~~~~W~pDPvTGyy 73 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYY 73 (93)
T ss_pred cccccccccCCCCccc
Confidence 4556899999998854
No 32
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=42.03 E-value=71 Score=21.06 Aligned_cols=53 Identities=9% Similarity=0.211 Sum_probs=36.0
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeec--------------CCeEEEEEecC-CcEEEEeCCCcccCCC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGEL--------------GDSVEVELVET-GKRIVVPKDDIQKMNP 82 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~--------------~~~~~v~~~~~-g~~~~v~~~~~~~~np 82 (116)
.|..|+.||..-..--|=+|.|.+.. ...+.|+...+ ++.-.++.+++.+...
T Consensus 2 ~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~aWv~~~~l~pf~~ 69 (110)
T cd05837 2 KYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPERAWISEKSLKPFKG 69 (110)
T ss_pred CCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCEEEecHHHccccCC
Confidence 47889999999888888899988521 23555654443 4566677666665543
No 33
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=36.75 E-value=85 Score=20.66 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=26.3
Q ss_pred cceeeeeeC--CCCCeeeeEEeeec--------CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 33 QKRLVWVPH--ENQGFVAAGIKGEL--------GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 33 ~g~~vWv~d--~~~~~v~a~V~~~~--------~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
.|.-|=|.. .+..|.+|-|++.. .+++.|+...||+-.+|...++...+
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD~KfysV~rkd~~e~~ 66 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSCNDDVTVKKDQCLVRSFKDGKFYSVARKDVREFD 66 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS-SS----TT-EEEEESSS--EEEE-TTTEE---
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCccceeeeccceEEEEEeccCceEEEEhhhhhhcc
Confidence 355555543 35689999998743 35677776678998888887775544
No 34
>PRK14639 hypothetical protein; Provisional
Probab=36.66 E-value=79 Score=21.90 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=30.3
Q ss_pred ccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCccc
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
..|.+|=|.-.+.....|++++.+++.+++....+++.++++.+++..
T Consensus 86 ~~G~~v~v~l~~~~~~~G~L~~~~~~~i~l~~~~~~~~~~i~~~~I~k 133 (140)
T PRK14639 86 SIGELVKITTNEKEKFEGKIVSVDDENITLENLENKEKTTINFNDIKK 133 (140)
T ss_pred hCCCEEEEEECCCcEEEEEEEEEeCCEEEEEEccCCcEEEEEhHHeee
Confidence 345544443223457779999998898888643456666776655543
No 35
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=36.34 E-value=86 Score=21.64 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=29.2
Q ss_pred ceeeeeeCCCCCeeeeEEeeecCC--eEEEEEecCCcEEEEeCCCcc
Q psy5412 34 KRLVWVPHENQGFVAAGIKGELGD--SVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 34 g~~vWv~d~~~~~v~a~V~~~~~~--~~~v~~~~~g~~~~v~~~~~~ 78 (116)
.+-||..- +-.|-||++++...+ +..|.. ++|. ..++..++.
T Consensus 13 ~~avW~~~-~~~yYPa~~~~~~~~~~~~~V~F-edg~-~~i~~~dv~ 56 (131)
T PF08605_consen 13 ENAVWAGY-NLKYYPATCVGSGVDRDRSLVRF-EDGT-YEIKNEDVK 56 (131)
T ss_pred ccceeecC-CCeEeeEEEEeecCCCCeEEEEE-ecCc-eEeCcccEe
Confidence 45688887 788999999987654 466764 6666 556555543
No 36
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=32.19 E-value=21 Score=23.04 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=17.2
Q ss_pred cccceeeeeeCCCCCeeeeEEeeec
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGEL 55 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~ 55 (116)
....-.+|||...-|....+|....
T Consensus 42 ~~~~P~lWIP~D~~GvS~~ei~~~~ 66 (95)
T PF12621_consen 42 SAPQPILWIPRDPLGVSRQEIEETR 66 (95)
T ss_pred cCCCCeEEeecCCCCCCHHHHHHhh
Confidence 3455689999877777766665543
No 37
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=30.47 E-value=1.5e+02 Score=18.96 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=33.9
Q ss_pred ccceeeeeeCCCCCeeeeEEeeec------------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGEL------------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~~------------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
-.|+.||..-...-|=+|.|.+.. .+.+.|....+...-.++.+.+.+.
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y~Wv~~~~l~pf 62 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDYYWVHRGRVFPY 62 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCEEEeccccccch
Confidence 358999999878888899988632 2356666556666666766666554
No 38
>PRK03348 DNA polymerase IV; Provisional
Probab=30.33 E-value=83 Score=25.85 Aligned_cols=50 Identities=20% Similarity=0.289 Sum_probs=35.2
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEe----cCCcEEEE--eCCCcccCCCC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELV----ETGKRIVV--PKDDIQKMNPP 83 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~----~~g~~~~v--~~~~~~~~np~ 83 (116)
.|..|.-||=++-.+|||-| ..-|.+||+.. ..|.+.+. +..++.+.+|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (454)
T PRK03348 389 AWRAGQDVAHPEYGHGWVQG----AGHGVVTVRFETRTTGPGPVRTFPVDDPDLTPADPL 444 (454)
T ss_pred CCCCCCccccCCCCCcceec----CCCeEEEEEeccCCCCCCCccccCCCCcccCcCCCC
Confidence 48888888888878899865 45567788753 34555554 44567888876
No 39
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=26.21 E-value=2.2e+02 Score=19.54 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=33.9
Q ss_pred cceeeeeeCCCCCe-eeeEEeee-cCCeEEEEEecCCcEEEEeCCCcccCCCC
Q psy5412 33 QKRLVWVPHENQGF-VAAGIKGE-LGDSVEVELVETGKRIVVPKDDIQKMNPP 83 (116)
Q Consensus 33 ~g~~vWv~d~~~~~-v~a~V~~~-~~~~~~v~~~~~g~~~~v~~~~~~~~np~ 83 (116)
.|.+|.-.=...+| -+++|... .+++..|.. +||....+..+++-.++|-
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~~~~~kykv~F-dDG~~~~v~~~div~~dpl 56 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSDKGKNKYKVLF-DDGYECRVLGKDIVVCDPL 56 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEEETTTEEEEEE-TTS-EEEEECCCEEEESSS
T ss_pred cccEEEEEEccCCcccCceEeecCCCCeEEEEe-cCCccceeccCcEEEEcce
Confidence 45666665445555 78998876 567888864 8998888888877666553
No 40
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=25.18 E-value=1.8e+02 Score=19.82 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=24.5
Q ss_pred CCCCCeeeeEEeeecCC--eEEEEEecCC---cEEEEeCCCccc
Q psy5412 41 HENQGFVAAGIKGELGD--SVEVELVETG---KRIVVPKDDIQK 79 (116)
Q Consensus 41 d~~~~~v~a~V~~~~~~--~~~v~~~~~g---~~~~v~~~~~~~ 79 (116)
+..+.|++|+|++..++ +..|.=.+++ +...++.+.+-|
T Consensus 14 ~~~~~WIla~Vv~~~~~~~rYeV~D~d~~~~~~~~~~~~~~iIP 57 (130)
T PF07039_consen 14 NEEEEWILAEVVKYNSDGNRYEVEDPDPEEEKKRYKLSRKQIIP 57 (130)
T ss_dssp TTTCEEEEEEEEEEETTTTEEEEEETTTCTTTEEEEEEGGGEEE
T ss_pred CCCCCEEEEEEEEEeCCCCEEEEecCCCCCCCceEEeCHHHEEE
Confidence 45678999999997654 5777622222 355566555443
No 41
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=24.72 E-value=27 Score=22.97 Aligned_cols=20 Identities=10% Similarity=0.395 Sum_probs=17.0
Q ss_pred cccccceeeeeeCCCCCeee
Q psy5412 29 AEWTQKRLVWVPHENQGFVA 48 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~ 48 (116)
-.|+.|+.||-.+.++.|..
T Consensus 28 flfddg~~vw~e~~d~~w~r 47 (111)
T PF02484_consen 28 FLFDDGDIVWSEDDDETWNR 47 (111)
T ss_pred eEecCCcEEEecCChHHHHH
Confidence 35899999999998988864
No 42
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=24.62 E-value=25 Score=19.25 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=19.7
Q ss_pred cchhhccCcccccccccceeeeeeCCCCCeee
Q psy5412 17 VDRNAFNDPATQAEWTQKRLVWVPHENQGFVA 48 (116)
Q Consensus 17 ~~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~ 48 (116)
++.++++....+......+.||-.. -..|.+
T Consensus 14 ~s~~el~~l~~~g~i~~~tlvw~~g-~~~W~p 44 (45)
T PF14237_consen 14 FSLEELRQLISSGEIDPDTLVWKEG-MSDWKP 44 (45)
T ss_pred cCHHHHHHHHHcCCCCCCCeEeCCC-hhhceE
Confidence 3555665555566777788888765 444665
No 43
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=23.50 E-value=76 Score=16.11 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=11.4
Q ss_pred HHHHHHHHhhcCCC
Q psy5412 102 VLHNIKDRYYSGLI 115 (116)
Q Consensus 102 IL~nLr~Ry~~~~I 115 (116)
=|..|+.+|.++.|
T Consensus 4 ~L~~L~~l~~~G~I 17 (31)
T PF09851_consen 4 RLEKLKELYDKGEI 17 (31)
T ss_pred HHHHHHHHHHcCCC
Confidence 36788999998877
No 44
>PRK00587 hypothetical protein; Provisional
Probab=20.47 E-value=1e+02 Score=20.20 Aligned_cols=21 Identities=0% Similarity=-0.073 Sum_probs=14.7
Q ss_pred cCCeEEEEEecCCcEEEEeCC
Q psy5412 55 LGDSVEVELVETGKRIVVPKD 75 (116)
Q Consensus 55 ~~~~~~v~~~~~g~~~~v~~~ 75 (116)
.||-|+|++..+++...++.+
T Consensus 33 ~gGlVkV~~nG~~~i~~i~Id 53 (99)
T PRK00587 33 YKKYILIKIKGNLNIEKIEIN 53 (99)
T ss_pred cCCeEEEEEEcCccEEEEEEC
Confidence 377788887677777666544
Done!