Query psy5412
Match_columns 116
No_of_seqs 123 out of 1126
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 16:50:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5412.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5412hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db1_A Myosin-7; S1DC, cardiac 99.9 6.5E-27 2.2E-31 198.1 8.3 111 4-116 3-115 (783)
2 1kk8_A Myosin heavy chain, str 99.9 2.5E-25 8.4E-30 189.6 10.6 110 6-116 4-113 (837)
3 1i84_S Smooth muscle myosin he 99.9 1.2E-24 4E-29 190.5 9.6 110 7-116 4-113 (1184)
4 1w9i_A Myosin II heavy chain; 99.9 2.5E-23 8.5E-28 176.0 9.9 110 3-116 3-116 (770)
5 1g8x_A Myosin II heavy chain f 99.9 2.5E-23 8.6E-28 180.1 10.0 112 2-116 2-116 (1010)
6 2ycu_A Non muscle myosin 2C, a 99.8 3.7E-21 1.3E-25 166.4 9.2 87 30-116 4-90 (995)
7 4anj_A Unconventional myosin-V 99.8 9.4E-21 3.2E-25 164.4 8.9 85 32-116 2-87 (1052)
8 1w7j_A Myosin VA; motor protei 99.8 4.8E-19 1.7E-23 150.4 8.9 88 28-116 4-100 (795)
9 2v26_A Myosin VI; calmodulin-b 99.8 5.7E-19 1.9E-23 149.8 8.5 82 35-116 1-83 (784)
10 2dfs_A Myosin-5A; myosin-V, in 99.7 1.9E-18 6.3E-23 150.6 6.2 88 28-116 4-100 (1080)
11 3qii_A PHD finger protein 20; 95.6 0.045 1.5E-06 34.4 6.1 63 18-81 9-72 (85)
12 2xk0_A Polycomb protein PCL; t 94.8 0.22 7.4E-06 30.0 7.3 52 29-81 14-65 (69)
13 1mhn_A SurviVal motor neuron p 93.3 0.54 1.8E-05 26.9 6.9 53 30-82 3-58 (59)
14 4hcz_A PHD finger protein 1; p 93.2 0.47 1.6E-05 27.6 6.4 51 30-81 3-55 (58)
15 3p8d_A Medulloblastoma antigen 92.7 0.5 1.7E-05 28.3 6.2 53 28-81 4-57 (67)
16 1g5v_A SurviVal motor neuron p 92.7 0.58 2E-05 29.3 6.8 56 28-83 8-66 (88)
17 2m0o_A PHD finger protein 1; t 90.4 1.2 4.1E-05 27.3 6.2 50 29-79 25-76 (79)
18 4a4f_A SurviVal of motor neuro 90.1 1.4 4.9E-05 25.5 6.3 53 28-80 6-61 (64)
19 2d9t_A Tudor domain-containing 89.7 2.2 7.5E-05 25.8 7.3 56 29-84 8-66 (78)
20 2equ_A PHD finger protein 20-l 89.1 1.6 5.4E-05 26.4 6.1 54 28-82 7-61 (74)
21 3s6w_A Tudor domain-containing 87.6 2 6.8E-05 23.9 5.5 49 31-79 2-53 (54)
22 2e5q_A PHD finger protein 19; 84.9 4.2 0.00014 23.9 6.6 54 27-81 4-59 (63)
23 3fdr_A Tudor and KH domain-con 81.0 4.5 0.00015 24.8 5.5 53 29-81 26-80 (94)
24 2eqk_A Tudor domain-containing 79.0 8.2 0.00028 24.0 6.1 55 27-81 18-74 (85)
25 3pnw_C Tudor domain-containing 78.3 7 0.00024 23.5 5.6 54 29-82 16-72 (77)
26 2eqj_A Metal-response element- 78.1 8.4 0.00029 22.8 7.3 52 27-79 10-63 (66)
27 2diq_A Tudor and KH domain-con 77.6 4.2 0.00014 25.7 4.7 52 29-80 31-84 (110)
28 2qqr_A JMJC domain-containing 76.8 8.1 0.00028 25.4 5.9 48 30-78 5-54 (118)
29 4fu6_A PC4 and SFRS1-interacti 75.3 6.5 0.00022 26.5 5.4 54 26-79 18-78 (153)
30 2wac_A CG7008-PA; unknown func 72.8 9.8 0.00034 26.3 6.0 51 31-81 52-103 (218)
31 2ldm_A Uncharacterized protein 74.9 0.75 2.6E-05 28.5 0.0 51 29-80 5-56 (81)
32 2daq_A WHSC1L1 protein, isofor 72.2 14 0.00048 23.3 6.2 54 29-82 7-72 (110)
33 2l8d_A Lamin-B receptor; DNA b 72.0 11 0.00038 22.3 5.0 51 28-81 7-62 (66)
34 2e5p_A Protein PHF1, PHD finge 71.5 13 0.00046 22.0 7.1 52 29-81 8-61 (68)
35 2dig_A Lamin-B receptor; tudor 68.4 12 0.00042 22.2 4.7 50 28-80 10-64 (68)
36 1ri0_A Hepatoma-derived growth 67.8 13 0.00045 23.7 5.3 54 27-80 16-76 (110)
37 1khc_A DNA cytosine-5 methyltr 65.4 13 0.00045 25.0 5.1 54 27-80 8-69 (147)
38 3l42_A Peregrin; transcription 64.8 21 0.00072 23.8 5.9 81 28-111 3-116 (130)
39 3qby_A Hepatoma-derived growth 64.7 14 0.00048 22.9 4.8 52 29-80 4-62 (94)
40 3llr_A DNA (cytosine-5)-methyl 64.2 18 0.00061 24.7 5.6 54 27-80 13-74 (154)
41 2hqx_A P100 CO-activator tudor 62.5 20 0.00069 25.4 6.0 51 30-80 65-116 (246)
42 2l89_A PWWP domain-containing 61.8 20 0.00067 22.7 5.2 54 28-81 3-68 (108)
43 2gfu_A DNA mismatch repair pro 61.7 19 0.00063 23.6 5.3 56 27-82 19-86 (134)
44 3pfs_A Bromodomain and PHD fin 59.2 28 0.00096 23.9 5.9 82 27-111 33-147 (158)
45 2xdp_A Lysine-specific demethy 58.1 14 0.00048 24.4 4.1 48 29-77 5-54 (123)
46 3h8z_A FragIle X mental retard 55.1 23 0.00078 23.4 4.8 55 29-83 59-120 (128)
47 2rnz_A Histone acetyltransfera 53.8 20 0.00069 22.5 4.1 29 26-55 21-49 (94)
48 4b9w_A TDRD1, tudor domain-con 49.7 38 0.0013 23.3 5.5 50 31-80 66-117 (201)
49 1wgs_A MYST histone acetyltran 48.3 16 0.00054 24.3 3.1 27 28-54 10-36 (133)
50 2lcd_A AT-rich interactive dom 53.2 3.9 0.00013 26.9 0.0 48 29-77 55-103 (118)
51 4b9x_A TDRD1, tudor domain-con 46.2 44 0.0015 23.5 5.5 50 31-80 66-117 (226)
52 2g3r_A Tumor suppressor P53-bi 43.7 67 0.0023 21.1 6.4 49 32-81 6-56 (123)
53 2ro0_A Histone acetyltransfera 43.6 25 0.00084 21.9 3.3 28 27-55 20-47 (92)
54 3d0f_A Penicillin-binding 1 tr 42.5 43 0.0015 20.7 4.4 33 44-77 34-66 (106)
55 2hbp_A Cytoskeleton assembly c 42.4 52 0.0018 19.4 6.3 44 34-78 4-47 (68)
56 1h3z_A Hypothetical 62.8 kDa p 41.7 42 0.0014 21.0 4.3 54 28-81 4-71 (109)
57 3pmi_A PWWP domain-containing 41.0 51 0.0017 22.0 4.7 51 29-79 3-60 (134)
58 2yrv_A AT-rich interactive dom 38.8 73 0.0025 20.8 5.1 49 33-81 13-71 (117)
59 2lcc_A AT-rich interactive dom 38.0 17 0.00058 21.8 1.8 29 27-55 2-33 (76)
60 3bdl_A Staphylococcal nuclease 37.7 58 0.002 26.2 5.5 51 31-81 412-463 (570)
61 1ssf_A Transformation related 32.7 1.2E+02 0.0041 20.8 5.9 46 32-78 10-57 (156)
62 2f5k_A MORF-related gene 15 is 32.4 53 0.0018 20.8 3.6 27 28-55 20-46 (102)
63 2do3_A Transcription elongatio 31.9 81 0.0028 18.6 5.6 51 29-79 16-66 (69)
64 2e70_A Transcription elongatio 29.4 92 0.0031 18.4 4.9 47 33-79 20-66 (71)
65 3m9q_A Protein MALE-specific l 26.6 95 0.0033 19.6 4.0 28 27-54 16-47 (101)
66 3sd4_A PHD finger protein 20; 24.0 1.1E+02 0.0037 17.4 6.1 37 28-64 10-48 (69)
67 2ckk_A KIN17; beta barrel, rib 23.1 1.4E+02 0.0048 19.3 4.5 35 48-82 36-71 (127)
68 2eko_A Histone acetyltransfera 22.8 52 0.0018 20.2 2.2 28 28-55 7-38 (87)
69 3h8z_A FragIle X mental retard 22.7 1.7E+02 0.0057 19.1 6.3 46 34-79 5-51 (128)
70 2bud_A Males-absent on the fir 21.5 94 0.0032 19.3 3.2 23 32-54 16-38 (92)
71 3mh9_C Lipoprotein LPRG; mutan 20.4 1.6E+02 0.0053 20.8 4.6 41 34-74 165-206 (218)
No 1
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.93 E-value=6.5e-27 Score=198.14 Aligned_cols=111 Identities=41% Similarity=0.588 Sum_probs=103.0
Q ss_pred CCCC--CCccccccccchhhccCcccccccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 4 DLDP--NDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 4 ~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
|+++ .+++++||+++++++.. .|+.+|+.|.+|||||++++|++|+|++..+++++|+. ++|++++++.+++.++|
T Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~vWv~d~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~v~~~n 80 (783)
T 4db1_A 3 DSEMAVFGAAAPYLRKSEKERLE-AQTRPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTAET-EYGKTVTVKEDQVMQQN 80 (783)
T ss_dssp TGGGGGGGGGGGGTCCCHHHHHH-HHHSCCCTTTEEEEECSSSSEEEEEEEEECSSEEEEEE-TTTEEEEEEGGGCEECC
T ss_pred CcchhhcCchhhHhccCHHHHHH-hhccCCcCCCEEEEECCCCCEEEEEEEEecCCEEEEEE-CCCCEEeCCHHHcccCC
Confidence 4444 35688999999999864 68999999999999999999999999999999999984 89999999999999999
Q ss_pred CCCcCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 82 PPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 82 p~~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
|+.+++++||+.|++||||+|||||+.||.+++||
T Consensus 81 p~~~~~~eDl~~L~~LnE~svL~nL~~Ry~~~~IY 115 (783)
T 4db1_A 81 PPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIY 115 (783)
T ss_dssp CGGGTTCSBGGGCSCCSHHHHHHHHHHHHHTTCCE
T ss_pred CCccCCcchhhccccccHHHHHHHHHHHhcCCceE
Confidence 99999999999999999999999999999999998
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.92 E-value=2.5e-25 Score=189.65 Aligned_cols=110 Identities=51% Similarity=0.858 Sum_probs=99.7
Q ss_pred CCCCccccccccchhhccCcccccccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCCCCCc
Q psy5412 6 DPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKF 85 (116)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~ 85 (116)
+..+++++||++++++++. .|+.+|+.|.+|||||++++|++|+|++..+++++|++.++|++++++.+++.++||+.+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~ 82 (837)
T 1kk8_A 4 DFSDPDFQYLAVDRKKLMK-EQTAAFDGKKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQSMNPPKF 82 (837)
T ss_dssp CCSCGGGTTTCCCSSSSCC---CCCCCTTTEEEEEETTTEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCCGGG
T ss_pred ccccchhhhhhcCHHHHHH-hhhcccccCCEEEEECCCCCeeEEEEEeecCCeEEEEEcCCCceEEeeHHHccccCchhh
Confidence 3344445999999998765 578899999999999999999999999999999999977789999999999999999999
Q ss_pred CCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 86 DKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 86 ~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
++++||+.|++||||+|||||+.||.+++||
T Consensus 83 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IY 113 (837)
T 1kk8_A 83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIY 113 (837)
T ss_dssp TTCSBGGGSSCCSHHHHHHHHHHHHHTTCCE
T ss_pred cchhhhhhhhcccHHHHHHHHHHHHhcCCce
Confidence 9999999999999999999999999999998
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.91 E-value=1.2e-24 Score=190.45 Aligned_cols=110 Identities=65% Similarity=1.098 Sum_probs=101.0
Q ss_pred CCCccccccccchhhccCcccccccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCCCCCcC
Q psy5412 7 PNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFD 86 (116)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~ 86 (116)
+.+++++||+++++.+....++.+|+.|.+|||||++++|++|+|++..+++++|.+.++|++++|+.+++.++||+.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vw~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~~~n~~~~~ 83 (1184)
T 1i84_S 4 PLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMNPPKFS 83 (1184)
T ss_dssp CCCTTGGGTSCCCCSCCCHHHHHHTTCTTEEEECCTTTSSEEEEEEEEETTEEEEEETTTCCEEEEETTSCEECCCGGGT
T ss_pred CCcchHHHHhcCHHHHhhhhhcCCcccCCeEEEECCCCCeEEEEEEEecCCeEEEEEcCCCcEEEeeHHHccCCCCcccc
Confidence 45567799999999665433577899999999999999999999999999999999778899999999999999999999
Q ss_pred CccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 87 KVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 87 ~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
+++||+.|+|||||+|||||+.||.++.||
T Consensus 84 ~~~Dl~~l~~l~e~~vl~~L~~Ry~~~~iy 113 (1184)
T 1i84_S 84 KVEDMAELTCLNEASVLHNLRERYFSGLIY 113 (1184)
T ss_dssp TCSBTTSSSCCCTTHHHHHHHHHHHHTCCE
T ss_pred ccchhhhhccccHHHHHHHHHHHhcCCCcE
Confidence 999999999999999999999999999998
No 4
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.89 E-value=2.5e-23 Score=176.00 Aligned_cols=110 Identities=35% Similarity=0.511 Sum_probs=94.6
Q ss_pred CCCCCCCccccccccchhh-ccCcccccccccceeeeeeCC---CCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcc
Q psy5412 3 TDLDPNDPDMKYLSVDRNA-FNDPATQAEWTQKRLVWVPHE---NQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~g~~vWv~d~---~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~ 78 (116)
+--+.++++++||++++++ ++. .+..+ .|.+|||||+ +++|++|+|++..+++++|+ .++|++++++.+++.
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~--~~~~vWv~~~~~~~~~~~~~~v~~~~~~~~~v~-~~~g~~~~v~~~~v~ 78 (770)
T 1w9i_A 3 PIHDRTSDYHKYLKVKQGDSDLF-KLTVS--DKRYIWYNPDPKERDSYECGEIVSETSDSFTFK-TVDGQDRQVKKDDAN 78 (770)
T ss_dssp TTTCTTSHHHHHHSCCCCC-------------CCEEEECSSTTCTTCCEEEEEEEECSSEEEEE-CTTSCEEEEETTTCE
T ss_pred chhhhhcchhhhhhcccchhHHh-hhhcc--CCCEEEeeCCcccccCceEEEEEEecCCeEEee-cCCCcEEEEchHhcc
Confidence 3445677888999999998 443 23333 8999999998 89999999999999999998 688999999999999
Q ss_pred cCCCCCcCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 79 KMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 79 ~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
++||+.+++++||+.|++||||+|||||+.||.+++||
T Consensus 79 ~~np~~~~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IY 116 (770)
T 1w9i_A 79 QRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIY 116 (770)
T ss_dssp ECCCGGGTTCSBGGGCSCCCHHHHHHHHHHHHHTTCCE
T ss_pred ccCcccccchhhhhhhccCCHHHHHHHHHHHHhcCCce
Confidence 99999999999999999999999999999999999998
No 5
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.89 E-value=2.5e-23 Score=180.10 Aligned_cols=112 Identities=36% Similarity=0.530 Sum_probs=101.3
Q ss_pred CCCCCCCCccccccccchhhccCcccccccccceeee---eeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcc
Q psy5412 2 ATDLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVW---VPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~vW---v~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~ 78 (116)
-+..+.++++++||+++++++..+.. +|+.|.+|| |||++++|++|+|++..+++++|+. ++|++++++.+++.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~vW~~~v~~~~~~~~~~~v~~~~~~~~~v~~-~~g~~~~v~~~~~~ 78 (1010)
T 1g8x_A 2 NPIHDRTSDYHKYLKVKQGDSDLFKL--TVSDKRYIWYNPDPDERDSYECGEIVSETSDSFTFKT-VDGQDRQVKKDDAN 78 (1010)
T ss_dssp CTTSCTTSHHHHHHSCCCCSCCSSSC--CCCCCCEEEECSSTTCTTCCEEEEEEEEETTEEEEEC-SSSSEEEEETTTCC
T ss_pred CchhhhhcchhhhHhcchhhhhHhhc--chhcCCceeCccCcCcccCeeEEEEEEecCCeEEEEe-cCCcEEEecHHhcc
Confidence 34556677888999999998533333 899999999 9999999999999999999999986 67889999999999
Q ss_pred cCCCCCcCCccccccCCCCChHHHHHHHHHHhhcCCCC
Q psy5412 79 KMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116 (116)
Q Consensus 79 ~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~~IY 116 (116)
++||+.+++++||+.|++|||++|||||+.||.+++||
T Consensus 79 ~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iY 116 (1010)
T 1g8x_A 79 QRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIY 116 (1010)
T ss_dssp BCCCGGGTTCSBGGGCSSCCHHHHHHHHHHHHTTTCCE
T ss_pred ccCcchhcchhhhhhhhcccHHHHHHHHHHHHhhCCce
Confidence 99999999999999999999999999999999999998
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.84 E-value=3.7e-21 Score=166.42 Aligned_cols=87 Identities=66% Similarity=1.174 Sum_probs=83.5
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCCCCCcCCccccccCCCCChHHHHHHHHHH
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDR 109 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~R 109 (116)
+|+.|.+|||||++++|++|+|++..+++++|+..++|++++++.+++.++||+.+++++||+.|++||||+|||||+.|
T Consensus 4 ~~~~~~~vwv~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~v~~~~~~~~np~~~~~~~Dl~~L~~l~e~~vl~nL~~R 83 (995)
T 2ycu_A 4 EWTARRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSKAEDMAELTCLNEASVLHNLRER 83 (995)
T ss_dssp CCGGGCEEEEEETTTEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGCEECCCGGGTTCSBGGGCSSCSHHHHHHHHHHH
T ss_pred cccCCCeEEEECCCCceEEEEEEEecCCeEEEEECCCCeEEEeeHHHcccCCCccccccchhhhhccccHHHHHHHHHHH
Confidence 89999999999999999999999999999999976677799999999999999999999999999999999999999999
Q ss_pred hhcCCCC
Q psy5412 110 YYSGLIY 116 (116)
Q Consensus 110 y~~~~IY 116 (116)
|.+++||
T Consensus 84 y~~~~iY 90 (995)
T 2ycu_A 84 YYSGLIY 90 (995)
T ss_dssp HHTTCCE
T ss_pred HhcCcee
Confidence 9999998
No 7
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.83 E-value=9.4e-21 Score=164.45 Aligned_cols=85 Identities=34% Similarity=0.521 Sum_probs=76.7
Q ss_pred ccceeeeeeCCCCCeeeeEEeeecCCeEEEEEe-cCCcEEEEeCCCcccCCCCCcCCccccccCCCCChHHHHHHHHHHh
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGELGDSVEVELV-ETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRY 110 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~-~~g~~~~v~~~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry 110 (116)
++|++|||||++++|++|+|++..+++++|++. ++|++++++.+++.++||+..+++|||++|+|||||+|||||+.||
T Consensus 2 e~G~~VWv~d~~~~~~~a~v~~~~~~~~~v~~~~~~g~~~~~~~~~v~~~n~~~~~~veDl~~L~~LnE~svL~nL~~Ry 81 (1052)
T 4anj_A 2 EDGKPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRY 81 (1052)
T ss_dssp --CCCEEEEETTTEEEEEEEEEECSSEEEEEEC----CCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEEEEcCCcEEEEEeCCCCcEEEecHHHcCCCCCCccCCCcccccCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999999999998754 5688999999999999999999999999999999999999999999
Q ss_pred hcCCCC
Q psy5412 111 YSGLIY 116 (116)
Q Consensus 111 ~~~~IY 116 (116)
.+++||
T Consensus 82 ~~~~IY 87 (1052)
T 4anj_A 82 SKDRIY 87 (1052)
T ss_dssp HTTCCE
T ss_pred cCCCcE
Confidence 999998
No 8
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.77 E-value=4.8e-19 Score=150.40 Aligned_cols=88 Identities=28% Similarity=0.470 Sum_probs=77.0
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeee---cCCeEEEEEecCCcEEEEeC----CCccc-CCCCCcCCccccccCCCCCh
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGE---LGDSVEVELVETGKRIVVPK----DDIQK-MNPPKFDKVEDMADLTCLNE 99 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~---~~~~~~v~~~~~g~~~~v~~----~~~~~-~np~~~~~vdDl~~L~~LnE 99 (116)
...|..|.+|||||++++|++|+|++. .+++++|+. ++|++.+++. +++.+ +||+...+++||+.|++|||
T Consensus 4 ~~~~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~-~~g~~~~v~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~E 82 (795)
T 1w7j_A 4 SELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL-EEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHE 82 (795)
T ss_dssp GGGCCTTCEEEEEETTTEEEEEEESSCCCTTCSEEEEEC-SSSSEEEEECCTTTTCCCCBCCCGGGTTCSSSTTCSCCSH
T ss_pred hhhcccCCEEEEECCCCceEEEEEEeeccCCCceEEEEE-CCCCEEEEeccCcccccccccCcchhccccchhhhhcccH
Confidence 467899999999999999999999973 345688875 6798888876 35666 59999999999999999999
Q ss_pred HHHHHHHHHHh-hcCCCC
Q psy5412 100 ASVLHNIKDRY-YSGLIY 116 (116)
Q Consensus 100 asIL~nLr~Ry-~~~~IY 116 (116)
|+|||||+.|| .+++||
T Consensus 83 ~svL~nL~~Ry~~~~~IY 100 (795)
T 1w7j_A 83 PAVLHNLKVRFIDSKLIY 100 (795)
T ss_dssp HHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHHhcccch
Confidence 99999999999 999998
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.77 E-value=5.7e-19 Score=149.81 Aligned_cols=82 Identities=35% Similarity=0.541 Sum_probs=75.2
Q ss_pred eeeeeeCCCCCeeeeEEeeecCCeEEEEEe-cCCcEEEEeCCCcccCCCCCcCCccccccCCCCChHHHHHHHHHHhhcC
Q psy5412 35 RLVWVPHENQGFVAAGIKGELGDSVEVELV-ETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSG 113 (116)
Q Consensus 35 ~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~-~~g~~~~v~~~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~~~ 113 (116)
.+|||||++++|+.|+|++..+++++|+.. ++|++++++.+++.++||+...+++||+.|++||||+|||||+.||.++
T Consensus 1 ~~vWv~~~~~~~~~~~v~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~ 80 (784)
T 2v26_A 1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKD 80 (784)
T ss_dssp CCEEEEETTTEEEEEEEEEECSSEEEEEC----CCCEEEEGGGCEECCSCSSCCCSBGGGSSSCSHHHHHHHHHHHHHTT
T ss_pred CeEEEEcCCCcEEEEEEEEecCCeEEEEEECCCCCEEEEehhhccccccccccccchhhhhhhccHHHHHHHHHHHHhcC
Confidence 379999999999999999999999998854 4688999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy5412 114 LIY 116 (116)
Q Consensus 114 ~IY 116 (116)
+||
T Consensus 81 ~IY 83 (784)
T 2v26_A 81 RIY 83 (784)
T ss_dssp CCE
T ss_pred cee
Confidence 998
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.73 E-value=1.9e-18 Score=150.63 Aligned_cols=88 Identities=28% Similarity=0.470 Sum_probs=75.3
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeee---cCCeEEEEEecCCcEEEEeC----CCccc-CCCCCcCCccccccCCCCCh
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGE---LGDSVEVELVETGKRIVVPK----DDIQK-MNPPKFDKVEDMADLTCLNE 99 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~---~~~~~~v~~~~~g~~~~v~~----~~~~~-~np~~~~~vdDl~~L~~LnE 99 (116)
...|..|.+|||||++++|++|+|++. .++.++|.+ ++|++.+++. +++.+ +||+.+.+++||+.|+||||
T Consensus 4 ~~~~~~g~~vwv~~~~~~~~~~~v~~~~~~~~~~~~v~~-~~g~~~~~~~~~~~~~~~~~~np~~~~~~~Dl~~L~~l~e 82 (1080)
T 2dfs_A 4 SELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRL-EEGKDLEYCLDPKTKELPPLRNPDILVGENDLTALSYLHE 82 (1080)
T ss_dssp -CCCCTTCEEEEEETTTEEEEEECSSCCCTTCSEEECCC-SSSSCCEEECCTTTCCCCCBCCCGGGSSCSBSTTCSSCSH
T ss_pred hhhcccCCEEEEECCCCceEEEEEEeeecCCCceEEEEE-CCCCEEEEecCCcccccccccCcccccchhhhhhhhhcch
Confidence 467899999999999999999999873 344677765 6788877766 35666 59999999999999999999
Q ss_pred HHHHHHHHHHh-hcCCCC
Q psy5412 100 ASVLHNIKDRY-YSGLIY 116 (116)
Q Consensus 100 asIL~nLr~Ry-~~~~IY 116 (116)
|+|||||+.|| .++.||
T Consensus 83 ~~vl~nL~~Ry~~~~~iY 100 (1080)
T 2dfs_A 83 PAVLHNLKVRFIDSKLIY 100 (1080)
T ss_dssp HHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHHHhcCCch
Confidence 99999999999 999998
No 11
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=95.56 E-value=0.045 Score=34.44 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=40.2
Q ss_pred chhhccCcccccccccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 18 DRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
||+.+-...+...|..|+.|--.=.+-.|-+|+|.+..+ ++.+|+. .+|.+.+++...+-++.
T Consensus 9 ~~~~~~~~~~~~~f~vGd~VlArW~D~~yYPAkI~sV~~~~~YtV~F-~DG~~etvk~~~IKp~~ 72 (85)
T 3qii_A 9 SRENLYFQGGSSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF-YDGVVQTVKHIHVKAFS 72 (85)
T ss_dssp ------------CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEE-TTSCEEEEEGGGEEECC
T ss_pred cccccCcccCCcccccCCEEEEEeCCCCEeeEEEEEECCCCeEEEEE-eCCCeEEecHHHcccCC
Confidence 566664334578899999864433566799999999876 5888886 55999999988887763
No 12
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=94.84 E-value=0.22 Score=30.02 Aligned_cols=52 Identities=12% Similarity=0.234 Sum_probs=45.7
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
..|..|+.|-+...+..|.+|+|+....+++.|+. +|.+.+++..+++..+.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~F-eD~S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRF-DDQSEQWCEPDKLRKLG 65 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEE-TTCCEEEECTTTEECSS
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCceEEEEe-cCCcceeeeHHHHHhhc
Confidence 67899999999998889999999988888999985 89999999888887653
No 13
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=93.32 E-value=0.54 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.027 Sum_probs=41.0
Q ss_pred ccccceeeeeeCC-CCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 30 EWTQKRLVWVPHE-NQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 30 ~~~~g~~vWv~d~-~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
.|..|+.|=.+-. +..|-.|+|.+.. +++++|...+.|.+-+++.+++.++.+
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 4778888877743 5679999999975 478888876789888888888877643
No 14
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=93.23 E-value=0.47 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.067 Sum_probs=41.6
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
.|.+|+.|-+...+-.|-+|+|++.. ++++.|+. +|++..++..+++++..
T Consensus 3 ~f~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F-~D~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 3 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQF-EDDSQFLVLWKDISPAA 55 (58)
T ss_dssp SCCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE-TTSCEEEEEGGGEEECS
T ss_pred ccccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEE-cCCCeEEEEhHHccccc
Confidence 47789999998888889999999964 45888875 89999999888776543
No 15
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=92.71 E-value=0.5 Score=28.26 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=40.3
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
...|..|++|-..=.+..|-+|+|.+..+ ++.+|.. .+|.+.+++..++.++.
T Consensus 4 ~~~~~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F-~dG~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKF-YDGVVQTVKHIHVKAFS 57 (67)
T ss_dssp -CCCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEE-TTSCEEEEEGGGEEECC
T ss_pred CcccccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEE-eCCceEEEeHHHcccCC
Confidence 35688888765444567799999999876 4788876 55999999998887764
No 16
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.66 E-value=0.58 Score=29.30 Aligned_cols=56 Identities=13% Similarity=-0.013 Sum_probs=43.4
Q ss_pred ccccccceeeeeeCC-CCCeeeeEEeeecC--CeEEEEEecCCcEEEEeCCCcccCCCC
Q psy5412 28 QAEWTQKRLVWVPHE-NQGFVAAGIKGELG--DSVEVELVETGKRIVVPKDDIQKMNPP 83 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~-~~~~v~a~V~~~~~--~~~~v~~~~~g~~~~v~~~~~~~~np~ 83 (116)
...|..|+.|=..-. +..|-.|+|.+..+ ++++|...+.|..-+|...+|.+..+.
T Consensus 8 ~~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 66 (88)
T ss_dssp -CCCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--
T ss_pred cCCCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChh
Confidence 457889999877753 66799999999764 788898778898888988888887654
No 17
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=90.44 E-value=1.2 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.077 Sum_probs=42.1
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCccc
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
..|.+|+-|-+...+-.|.+|+|++.. ++++.|+. +|++..++.-++++.
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F-~D~S~~W~~~kdi~~ 76 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQF-EDDSQFLVLWKDISP 76 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEE-TTSCEEEEETTTBCC
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEE-cCCCeEEEEeecccc
Confidence 568999999999888889999999764 66788875 899999998887764
No 18
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=90.09 E-value=1.4 Score=25.50 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=41.1
Q ss_pred ccccccceeeeeeC-CCCCeeeeEEeeecC--CeEEEEEecCCcEEEEeCCCcccC
Q psy5412 28 QAEWTQKRLVWVPH-ENQGFVAAGIKGELG--DSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 28 ~~~~~~g~~vWv~d-~~~~~v~a~V~~~~~--~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
...|..|+.|=..- .+..|-.|+|.+..+ +.++|...+.|..-+|+.+++.+.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 35678899888775 456799999999764 688888778888888887777654
No 19
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=89.73 E-value=2.2 Score=25.77 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=43.5
Q ss_pred cccccceeeeeeCC-CCCeeeeEEeeecC--CeEEEEEecCCcEEEEeCCCcccCCCCC
Q psy5412 29 AEWTQKRLVWVPHE-NQGFVAAGIKGELG--DSVEVELVETGKRIVVPKDDIQKMNPPK 84 (116)
Q Consensus 29 ~~~~~g~~vWv~d~-~~~~v~a~V~~~~~--~~~~v~~~~~g~~~~v~~~~~~~~np~~ 84 (116)
..|..|+.|=.+-. +..|-.|+|.+..+ +++.|...+.|..-+|+.+++.++.+..
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~l 66 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEA 66 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHH
Confidence 45778888877753 56799999999764 7888887788988889888887776543
No 20
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.13 E-value=1.6 Score=26.41 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=40.4
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
...|..|+.|=-.-.+..|-+|+|.+..+ ++++|.. .++...+++...+.++.+
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f-~Dyn~e~v~~~~lrplp~ 61 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF-YDGVIRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEE-TTSCEEEECGGGEECCCG
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEE-ecCCeEEecHHHCeeCCh
Confidence 34678888876655566799999999865 6788875 566777788888877654
No 21
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=87.63 E-value=2 Score=23.87 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=35.6
Q ss_pred cccceeeeeeC-CCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCccc
Q psy5412 31 WTQKRLVWVPH-ENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 31 ~~~g~~vWv~d-~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
|..|+.|=.+- .+..|-.|+|.+.. ++.+.|...+.|..-+++.+++.|
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrp 53 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKP 53 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEE
Confidence 66788777764 35679999999874 467888876788877777666543
No 22
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.91 E-value=4.2 Score=23.86 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=43.0
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
.+..|.+|+-|=....+-.|.+|+|++.. ++.+.|+. +|++..++..+++++..
T Consensus 4 g~~~f~eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~F-eD~s~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 4 GSSGLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTF-EDNSKYWVLWKDIQHAG 59 (63)
T ss_dssp SCCCCCTTCEEEEECTTSCEEEEEECCCCSTTSEEEEEE-TTSCEEEEEGGGEECCS
T ss_pred CccceecCCEEEEEecCCCEEEEEEEEEecCCCEEEEEE-ccCceeEEEeecccccC
Confidence 46778999999777778889999999876 45677764 89999998888776643
No 23
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=81.01 E-value=4.5 Score=24.79 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=41.4
Q ss_pred cccccceeeeeeC-CCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 29 AEWTQKRLVWVPH-ENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 29 ~~~~~g~~vWv~d-~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
..+..|+.|=+.. .+..|-.|+|.+..+ +.+.|...+.|...+++.+++.+..
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEECC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcC
Confidence 4567888886653 467899999999764 5888887789998889888877654
No 24
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.02 E-value=8.2 Score=23.96 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=41.5
Q ss_pred cccccccceeeeeeCC-CCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 27 TQAEWTQKRLVWVPHE-NQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~-~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
+...|..|..|=+.-+ +..|..|+|.+..+ +++.|...+.|.+.+|+...+.+.+
T Consensus 18 ~~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L~ 74 (85)
T 2eqk_A 18 EPVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLE 74 (85)
T ss_dssp CCCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTTEEECC
T ss_pred cccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccccccCC
Confidence 4677888888766532 44899999999865 5777776688998888877776654
No 25
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=78.30 E-value=7 Score=23.46 Aligned_cols=54 Identities=17% Similarity=0.272 Sum_probs=40.7
Q ss_pred cccccceeeeeeC-CCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 29 AEWTQKRLVWVPH-ENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 29 ~~~~~g~~vWv~d-~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
..|..|+.|=..- .+..|-.|+|.+.. ++.+.|...+.|..-+|+.+++.++.+
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 3478888888774 45679999999975 457888877889888888888777644
No 26
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=78.13 E-value=8.4 Score=22.81 Aligned_cols=52 Identities=19% Similarity=0.120 Sum_probs=39.8
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCccc
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
+...|.+|+.|=..-.+-.|-+|+|++.. .++++|+. .||....+.-+++++
T Consensus 10 ~~~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F-~D~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 10 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIF-EDSSKSWVLWKDIQT 63 (66)
T ss_dssp CCCCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE-TTTEEEEEETTTEEC
T ss_pred ccccccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEE-ccCCEEEEEeecccc
Confidence 45678899876444456779999999976 47888875 899999888777754
No 27
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=77.63 E-value=4.2 Score=25.71 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=40.5
Q ss_pred cccccceeeeeeCC-CCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccC
Q psy5412 29 AEWTQKRLVWVPHE-NQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 29 ~~~~~g~~vWv~d~-~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
..+..|+.|=+... +..|-.|+|.+..+ +++.|...+.|...+++.+++.++
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l 84 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 84 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcC
Confidence 45678888866643 56899999998764 788888778999888888777655
No 28
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=76.80 E-value=8.1 Score=25.41 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeecCC-eEEEEEecCCcEE-EEeCCCcc
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGELGD-SVEVELVETGKRI-VVPKDDIQ 78 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~~~-~~~v~~~~~g~~~-~v~~~~~~ 78 (116)
+...|+.||..+.+..|..|+|+..... -..|. .+||+.- .+-++++.
T Consensus 5 ~v~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~-F~DgS~s~dl~peDIv 54 (118)
T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTETFYEVN-FDDGSFSDNLYPEDIV 54 (118)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEE-ETTSCEEEEECGGGBC
T ss_pred eeccCCEEEEECCCCCEEeEEEEEEeeEEEEEEE-cCCCCccCCCCHhhcc
Confidence 4578999999999999999999986543 33343 3688743 34444443
No 29
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=75.25 E-value=6.5 Score=26.47 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=41.0
Q ss_pred ccccccccceeeeeeCCCCCeeeeEEeeec-------CCeEEEEEecCCcEEEEeCCCccc
Q psy5412 26 ATQAEWTQKRLVWVPHENQGFVAAGIKGEL-------GDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 26 ~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~-------~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
..+..|..|+.||..-..--|=+|.|.... .+.+.|....+...-.|...+|.+
T Consensus 18 ~~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~awv~~~~l~~ 78 (153)
T 4fu6_A 18 GMTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFP 78 (153)
T ss_dssp CSGGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCEEEECGGGEEE
T ss_pred hcccCCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCeEEeCHHHccC
Confidence 346789999999999878789999997632 346777766677777787776654
No 30
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=72.81 E-value=9.8 Score=26.27 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=40.2
Q ss_pred cccceeeeeeCC-CCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHE-NQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~-~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
+..|+.|=.... +..|..|+|.+..++++.|...+.|.+..++..++.++.
T Consensus 52 ~~~g~~c~a~~~~d~~wyRa~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~l~ 103 (218)
T 2wac_A 52 PKRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAALP 103 (218)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEEETTEEEEEETTTCCEEEEEGGGEEECC
T ss_pred CCcCCEEEEEECCCCeEEEEEEEEecCCeEEEEEEecCCeEEEchHHcccCC
Confidence 677888877764 568999999998778898887688988888777765543
No 31
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=74.93 E-value=0.75 Score=28.50 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=36.0
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
..|..|+.|=-.-.+..|-+|+|.+..+ ++++|...+ |...+++...+.|+
T Consensus 5 ~~~kvGd~clAkwsDg~wY~A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 5 SEFQINEQVLASWSDSRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF 56 (81)
Confidence 4577788764433345699999998754 577777645 88878887777665
No 32
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=72.21 E-value=14 Score=23.27 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.2
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec------------CCeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL------------GDSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~------------~~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
..+..|+.||..-..--|=+|.|.... .+.+.|....+.+.-.++..++.+...
T Consensus 7 ~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~ 72 (110)
T 2daq_A 7 GKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVE 72 (110)
T ss_dssp CSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCS
T ss_pred CCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEEEEcHHHCcCcch
Confidence 456789999999878889999998641 246777766777777888888877653
No 33
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=71.99 E-value=11 Score=22.25 Aligned_cols=51 Identities=14% Similarity=0.339 Sum_probs=38.5
Q ss_pred ccccccceee---eeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 28 QAEWTQKRLV---WVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 28 ~~~~~~g~~v---Wv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
...|..|+.| | + ...+|-+|+|.+.. ..-.+|+. .+|.+.+++..++-|.+
T Consensus 7 ~~~~~vgd~VmaRW-~-Gd~~yYparI~Si~s~~~~Y~V~f-KdgT~e~L~~kDIkp~~ 62 (66)
T 2l8d_A 7 NRKYADGEVVMGRW-P-GSVLYYEVQVTSYDDASHLYTVKY-KDGTELALKESDIRLQS 62 (66)
T ss_dssp SSSSCSSCEEEEEC-T-TSSCEEEEEEEEEETTTTEEEEEE-TTSCEEEEEGGGEECSS
T ss_pred ceEeecCCEEEEEc-C-CCccceEEEEEEeccCCceEEEEe-cCCCEEeechhccccch
Confidence 4567778765 7 4 47889999999975 33667765 56999999998887763
No 34
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.49 E-value=13 Score=22.01 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=41.7
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
..|.+|+-|=....+-.|.+|+|++.. .+.+.|+. +|++...+.-+++++.-
T Consensus 8 ~~f~eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~F-eD~s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQF-EDDSQFLVLWKDISPAA 61 (68)
T ss_dssp CCCCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEE-TTTEEEEEETTTEECCC
T ss_pred cccccCCEEEEEecCCcEEEeEEEEEecCCcEEEEEE-ccCCeeeeeeecccccc
Confidence 567888888777777889999999976 45677764 89999999888887653
No 35
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=68.42 E-value=12 Score=22.17 Aligned_cols=50 Identities=14% Similarity=0.294 Sum_probs=38.0
Q ss_pred ccccccceee---eeeCCCCCeeeeEEeeec--CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 28 QAEWTQKRLV---WVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 28 ~~~~~~g~~v---Wv~d~~~~~v~a~V~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
...|..|+.| |. ...+|-+|+|.+.. ..-.+|+. .+|.+.+++..++-+.
T Consensus 10 ~~~f~vgd~VmaRW~--Gd~~yYparItSits~~~~Y~Vkf-KdgT~e~L~~kDIKp~ 64 (68)
T 2dig_A 10 SRKFADGEVVRGRWP--GSSLYYEVEILSHDSTSQLYTVKY-KDGTELELKENDIKSG 64 (68)
T ss_dssp CCSSCSSCEEEEECT--TTCCEEEEEEEEEETTTTEEEEEC-TTSCEEEEETTTEECC
T ss_pred ceEeecCCEEEEEcc--CCccceEEEEEEeccCCceEEEEe-cCCCEEEechhccccC
Confidence 4567888765 77 57889999999975 33666764 5699999999888765
No 36
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=67.81 E-value=13 Score=23.70 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=40.9
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec-------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL-------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~-------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
....|..|+.||..-..--|=+|.|.... .+.+.|....+.+.-.+..+++.+.
T Consensus 16 ~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf 76 (110)
T 1ri0_A 16 RQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPY 76 (110)
T ss_dssp CSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECH
T ss_pred ccCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEEEECHHHccch
Confidence 34678999999999877778899998632 3577777666777777888887665
No 37
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=65.41 E-value=13 Score=25.02 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=41.5
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec--------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL--------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~--------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
....|..|+.||..-..--|=+|.|.... .+.+.|....+++...+..+++.+.
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~ 69 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVAL 69 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEET
T ss_pred CCccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCCEEEEcHHHCccc
Confidence 34678999999999878889999998742 2466777667777778888877765
No 38
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=64.85 E-value=21 Score=23.77 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=55.2
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeec--------------------------------CCeEEEEEecC-CcEEEEeC
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGEL--------------------------------GDSVEVELVET-GKRIVVPK 74 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~--------------------------------~~~~~v~~~~~-g~~~~v~~ 74 (116)
...|..++.||-....--|-+|.|+.-. ...+.|+..++ .+-.+++.
T Consensus 3 ~~~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~aWv~~ 82 (130)
T 3l42_A 3 DSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPR 82 (130)
T ss_dssp CSSSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCEEEEEG
T ss_pred cccCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCceEeecc
Confidence 4568999999999877778999987621 22355665553 46677888
Q ss_pred CCcccCCCCCcCCccccccCCCCChHHHHHHHHHHhh
Q psy5412 75 DDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYY 111 (116)
Q Consensus 75 ~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~ 111 (116)
..+.+... +...|-..|.+-..+++-..++.-|.
T Consensus 83 ~~i~pl~~---d~~~D~~kl~~s~K~~~rKav~~AYe 116 (130)
T 3l42_A 83 TKLVPLGV---NQDLDKEKMLEGRKSNIRKSVQIAYH 116 (130)
T ss_dssp GGEEESSS---CHHHHHHHHTCCSSHHHHHHHHHHHH
T ss_pred cceeecCC---chhhHHHhcccCCCHHHHHHHHHHHH
Confidence 88777654 23334444556678888888888775
No 39
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=64.72 E-value=14 Score=22.86 Aligned_cols=52 Identities=12% Similarity=0.090 Sum_probs=38.9
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec-------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL-------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~-------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
..|..|+.||..-..--|=+|+|.+.. .+++.|....+++.-.+..+++.+.
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf 62 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPY 62 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEH
T ss_pred CcCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCcceEchhHeeEH
Confidence 568899999999878888899998753 2466776656666777777766553
No 40
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=64.17 E-value=18 Score=24.68 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=42.3
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec--------CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL--------GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~--------~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
....|..|+.||..-...-|=+|+|.... .+.+.|....+++.-.+..+++.+.
T Consensus 13 dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf 74 (154)
T 3llr_A 13 DGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPL 74 (154)
T ss_dssp SSCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEG
T ss_pred cCCCCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCEEEEcHHHCcch
Confidence 34679999999999888889999998742 3567777667777778888777665
No 41
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=62.50 E-value=20 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=37.8
Q ss_pred ccccceeeeeeCCCCCeeeeEEeeec-CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 30 EWTQKRLVWVPHENQGFVAAGIKGEL-GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 30 ~~~~g~~vWv~d~~~~~v~a~V~~~~-~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
.+..|..|=....+..|..|+|.+.. ++++.|...+.|....++.+++.++
T Consensus 65 ~~~~G~~c~a~~~d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l 116 (246)
T 2hqx_A 65 APRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL 116 (246)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC
T ss_pred CCCCCCEEEEEcCCCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcC
Confidence 45678888777656789999999875 5788888778898877766554433
No 42
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=61.78 E-value=20 Score=22.72 Aligned_cols=54 Identities=7% Similarity=-0.049 Sum_probs=38.6
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeec------------CCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGEL------------GDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~------------~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
...|..|+.||..-..--|=+|.|.... .+.+.|....+++...+...++.+..
T Consensus 3 ~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~ 68 (108)
T 2l89_A 3 DDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLL 68 (108)
T ss_dssp SCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECC
T ss_pred CCcccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCCCEEEEchhhceeCC
Confidence 4568899999999877778899997521 23455555566667778877777654
No 43
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=61.70 E-value=19 Score=23.62 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.3
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec---------C--CeEEEEEecCC-cEEEEeCCCcccCCC
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL---------G--DSVEVELVETG-KRIVVPKDDIQKMNP 82 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~---------~--~~~~v~~~~~g-~~~~v~~~~~~~~np 82 (116)
....|..|+.||..-..--|=+|.|.... + ..+.|....+. +.-++...++.+...
T Consensus 19 ~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~ 86 (134)
T 2gfu_A 19 TSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTG 86 (134)
T ss_dssp SSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCC
T ss_pred cCCCCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCceEEECHHHcccCcc
Confidence 34689999999999878888899988742 1 25666655553 566788888777654
No 44
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=59.20 E-value=28 Score=23.91 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=55.3
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec--------------------------------CCeEEEEEecC-CcEEEEe
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL--------------------------------GDSVEVELVET-GKRIVVP 73 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~--------------------------------~~~~~v~~~~~-g~~~~v~ 73 (116)
....|..|+.||..-..--|-+|.|...+ ...+.|...++ .+-.++.
T Consensus 33 ~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~ 112 (158)
T 3pfs_A 33 DRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLP 112 (158)
T ss_dssp CCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEE
T ss_pred cCCCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCceEeec
Confidence 34579999999999877779999987621 22345554453 4667777
Q ss_pred CCCcccCCCCCcCCccccccCCCCChHHHHHHHHHHhh
Q psy5412 74 KDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYY 111 (116)
Q Consensus 74 ~~~~~~~np~~~~~vdDl~~L~~LnEasIL~nLr~Ry~ 111 (116)
...+.+... +...|-..|.+-..+.+-.+|+.=|.
T Consensus 113 ~~~L~Pl~~---d~~~D~~kl~e~Kks~~rKAl~~AYe 147 (158)
T 3pfs_A 113 RDKVLPLGV---EDTVDKLKMLEGRKTSIRKSVQVAYD 147 (158)
T ss_dssp GGGEEECSS---CHHHHHHHHTTTTTSTHHHHHHHHHH
T ss_pred cccEeecCC---chhhhhhhhccCCCHHHHHHHHHHHH
Confidence 777777653 22344445666677778888777764
No 45
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=58.09 E-value=14 Score=24.42 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=32.6
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeecCC-eEEEEEecCCcEE-EEeCCCc
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGELGD-SVEVELVETGKRI-VVPKDDI 77 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~~~-~~~v~~~~~g~~~-~v~~~~~ 77 (116)
.+...|+.||..+.+..|..|+|+..... -..|.. +||+.- .+-++++
T Consensus 5 ~~v~vGq~V~ak~~ngryy~~~V~~~~~~~~y~V~F-~DgS~s~dl~PedI 54 (123)
T 2xdp_A 5 KVISVGQTVITKHRNTRYYSCRVMAVTSQTFYEVMF-DDGSFSRDTFPEDI 54 (123)
T ss_dssp CCCCTTCCCCCCCCCCCCCCCEEEEEEEEEEEEEEE-TTSCEEEEECGGGB
T ss_pred cccccCCEEEEECCCCcEEeEEEEEEeeEEEEEEEc-CCCCccCCCCHhHc
Confidence 34578999999998888999999987643 334433 688743 2334443
No 46
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=55.10 E-value=23 Score=23.44 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=34.9
Q ss_pred cccccceeeeeeCC-CC----CeeeeEEeeecCCeEEEEEecCCc--EEEEeCCCcccCCCC
Q psy5412 29 AEWTQKRLVWVPHE-NQ----GFVAAGIKGELGDSVEVELVETGK--RIVVPKDDIQKMNPP 83 (116)
Q Consensus 29 ~~~~~g~~vWv~d~-~~----~~v~a~V~~~~~~~~~v~~~~~g~--~~~v~~~~~~~~np~ 83 (116)
..|..|+.|=|-.. ++ +|-+|+|++.+|+...|....-++ .-.|..+.+-+.|+.
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEETTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 45788886544332 33 899999999999999998543233 233566777666554
No 47
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=53.76 E-value=20 Score=22.51 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=23.9
Q ss_pred ccccccccceeeeeeCCCCCeeeeEEeeec
Q psy5412 26 ATQAEWTQKRLVWVPHENQGFVAAGIKGEL 55 (116)
Q Consensus 26 ~~~~~~~~g~~vWv~d~~~~~v~a~V~~~~ 55 (116)
.....|..|.+|+|.+ ...|..|+|++..
T Consensus 21 ~~~~~~~vG~kv~v~~-~~~~yeAeIl~ir 49 (94)
T 2rnz_A 21 MSVDDIIIKCQCWVQK-NDEERLAEILSIN 49 (94)
T ss_dssp SCGGGCCTTEEEEEEC-SSCEEEEEEEEEE
T ss_pred cccccccCCCEEEEEE-CCEEEEEEEEEEE
Confidence 3456799999999997 6789999998753
No 48
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=49.72 E-value=38 Score=23.28 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=37.0
Q ss_pred cccceeeeeeCC-CCCeeeeEEeee-cCCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 31 WTQKRLVWVPHE-NQGFVAAGIKGE-LGDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 31 ~~~g~~vWv~d~-~~~~v~a~V~~~-~~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
...|..|=...+ +..|..|+|.+. .++++.|...+.|...+++.+++.+.
T Consensus 66 ~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l 117 (201)
T 4b9w_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI 117 (201)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEEC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccC
Confidence 456777777643 456999999986 45678888778898888877766543
No 49
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=48.32 E-value=16 Score=24.26 Aligned_cols=27 Identities=4% Similarity=-0.018 Sum_probs=22.7
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeee
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGE 54 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~ 54 (116)
...|..|.+|+|.+....|-.|+|++.
T Consensus 10 ~~~~~vGe~v~~~~~d~~~y~AkIl~i 36 (133)
T 1wgs_A 10 EVTVEIGETYLCRRPDSTWHSAEVIQS 36 (133)
T ss_dssp CCCCCTTSEEEEEETTTEEEEEEEEEE
T ss_pred ccccCCCCEEEEEeCCCCEEEEEEEEE
Confidence 346899999999986668999999874
No 50
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=53.24 E-value=3.9 Score=26.91 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=36.6
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec-CCeEEEEEecCCcEEEEeCCCc
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL-GDSVEVELVETGKRIVVPKDDI 77 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~-~~~~~v~~~~~g~~~~v~~~~~ 77 (116)
++...|..|.+..++..|+.|.|.... ....+|.. +||.+.++....+
T Consensus 55 G~l~vG~~ve~~~~~~~~~~~~I~~i~D~S~YtVVF-dDGD~ktLrRt~l 103 (118)
T 2lcd_A 55 GPLRVGAIVETRTSDGSFQEAIISKLTDASWYTVVF-DDGDERTLRRTSL 103 (118)
Confidence 345788999999988889999998864 56777764 8888777765544
No 51
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=46.24 E-value=44 Score=23.48 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=37.1
Q ss_pred cccceeeeeeCC-CCCeeeeEEeeec-CCeEEEEEecCCcEEEEeCCCcccC
Q psy5412 31 WTQKRLVWVPHE-NQGFVAAGIKGEL-GDSVEVELVETGKRIVVPKDDIQKM 80 (116)
Q Consensus 31 ~~~g~~vWv~d~-~~~~v~a~V~~~~-~~~~~v~~~~~g~~~~v~~~~~~~~ 80 (116)
...|..|=...+ +..|..|+|.+.. ++.+.|...+.|....++..++.+.
T Consensus 66 ~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l 117 (226)
T 4b9x_A 66 AEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI 117 (226)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccC
Confidence 456777777643 4579999999864 5678888778898888877766544
No 52
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=43.71 E-value=67 Score=21.13 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=34.6
Q ss_pred ccceeeeeeCCCC-CeeeeEEee-ecCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 32 TQKRLVWVPHENQ-GFVAAGIKG-ELGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 32 ~~g~~vWv~d~~~-~~v~a~V~~-~~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
..|.+|...=... -|-+++|.. ...++..|.. +||...++..+.+-..+
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~~~ky~V~F-dDg~~~~v~~k~iiv~d 56 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLF-DDGYECDVLGKDILLCD 56 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEETTEEEEEE-TTSCEEEEEGGGEECCS
T ss_pred ccceEEEEEeccCCcCcccEEEEeccCCeEEEEE-cCCCeeEeecceEEEec
Confidence 3566666554444 599999977 5677899975 89998888776655433
No 53
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=43.63 E-value=25 Score=21.92 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=23.3
Q ss_pred cccccccceeeeeeCCCCCeeeeEEeeec
Q psy5412 27 TQAEWTQKRLVWVPHENQGFVAAGIKGEL 55 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~~~~v~a~V~~~~ 55 (116)
....|..|.+|+|.+ ...|..|+|++..
T Consensus 20 ~~~~~~vG~kv~v~~-~~~~y~AkIl~ir 47 (92)
T 2ro0_A 20 SVDDIIIKCQCWVQK-NDEERLAEILSIN 47 (92)
T ss_dssp CTTSCCTTCEEEEEE-TTEEEEEEEEEEE
T ss_pred ccccccCCCEEEEEE-CCEEEEEEEEEEE
Confidence 456789999999997 6789999999753
No 54
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=42.48 E-value=43 Score=20.66 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.1
Q ss_pred CCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCc
Q psy5412 44 QGFVAAGIKGELGDSVEVELVETGKRIVVPKDDI 77 (116)
Q Consensus 44 ~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~ 77 (116)
..|.+|.|++....+++|.+ .+|+..+++.+.+
T Consensus 34 ~~~~~AvV~~v~~~~~~v~~-~~g~~~~l~~~~~ 66 (106)
T 3d0f_A 34 DDILAAVVLSATPGAVEAFR-KNGETIRITGDGL 66 (106)
T ss_dssp TTCEEEEEEEEETTEEEEEE-TTSCEEEECGGGG
T ss_pred CCeEEEEEEEeCCCeEEEEE-cCCCeEEEcHHHC
Confidence 46999999999988888876 6777777766554
No 55
>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}
Probab=42.39 E-value=52 Score=19.45 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=34.6
Q ss_pred ceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCcc
Q psy5412 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 34 g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~ 78 (116)
..+.|......-=|.|+.+...++++.+.. .+|..+.|..+.+.
T Consensus 4 k~RtWtDrtG~F~VeA~flg~~dgki~LhK-~nGv~I~VP~~klS 47 (68)
T 2hbp_A 4 KSRLWVDRSGTFKVDAEFIGCAKGKIHLHK-ANGVKIAVAADKLS 47 (68)
T ss_dssp CSEEEEBSSSCCEEEEEEEEEETTEEEEEC-TTSCEEEEETTSBC
T ss_pred cccEEEcCCCCeEEEEEEEEEeCCEEEEEe-cCCcEEEeEhHHcC
Confidence 457899875555577999999999999874 89999988776653
No 56
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=41.66 E-value=42 Score=20.97 Aligned_cols=54 Identities=9% Similarity=0.083 Sum_probs=40.3
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeee--------------cCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGE--------------LGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~--------------~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
...|..|+.||..-..--|=+|.|... ..+.+.|....+++...+...++.+..
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~ 71 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLT 71 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECC
T ss_pred cccCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCCEEEECHHHeeeCC
Confidence 356789999999987777889999831 145677776667777778887777664
No 57
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=41.02 E-value=51 Score=21.96 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=33.7
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeec--CCeEEEEEec-----CCcEEEEeCCCccc
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVE-----TGKRIVVPKDDIQK 79 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~--~~~~~v~~~~-----~g~~~~v~~~~~~~ 79 (116)
.+++.|..||+.-.+.-|=+|.|++.. ..+..|-..+ ..+-++|....+-+
T Consensus 3 ~~~e~GmlVW~K~q~yPfWPAVVKSV~r~ekkA~VL~Ie~~m~~ekrGi~V~LrrLK~ 60 (134)
T 3pmi_A 3 RSFEVGMLVWHKHKKYPFWPAVVKSVRQRDKKASVLYIEGHMNPKMKGFTVSLKSLKH 60 (134)
T ss_dssp -CCCTTCEEEECCTTSCCEEEEEEEEEGGGTEEEEEECCSSCCTTSCCEEEEGGGCEE
T ss_pred cccccceEEEEEeccCCCcchheeeeeeccceEEEEEEeCCCCcccCceEeEcccCCC
Confidence 568899999999878888899998864 4466665322 12345555544433
No 58
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=38.83 E-value=73 Score=20.79 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=34.1
Q ss_pred cceeeeee--CCCCCeeeeEEeee--------cCCeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 33 QKRLVWVP--HENQGFVAAGIKGE--------LGDSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 33 ~g~~vWv~--d~~~~~v~a~V~~~--------~~~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
.|.-|=|. +++..|.+|-|++- +.+++.|+...||+-.+|...++.-.+
T Consensus 13 lGkVV~V~~~~kk~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDgKf~sV~rkdv~e~~ 71 (117)
T 2yrv_A 13 LGKVVSVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVD 71 (117)
T ss_dssp TTSEEEEECSSCSSCEEEEEEECCSSCSSCCCCTTCEEEEESSSCCEEEECTTTEECCC
T ss_pred cCcEEEEecCCCCCceeeeEEECCCCCCCeeeccceEEEEeeccCeEEEEEhHhhhhcc
Confidence 44444443 35678999999873 245888887789999998877765443
No 59
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=38.02 E-value=17 Score=21.77 Aligned_cols=29 Identities=21% Similarity=0.023 Sum_probs=22.3
Q ss_pred cccccccceeeeeeCCC---CCeeeeEEeeec
Q psy5412 27 TQAEWTQKRLVWVPHEN---QGFVAAGIKGEL 55 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~~---~~~v~a~V~~~~ 55 (116)
+...|..|.+|.|.++. ..|-.|+|++..
T Consensus 2 e~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~ 33 (76)
T 2lcc_A 2 DMEPCLTGTKVKVKYGRGKTQKIYEASIKSTE 33 (76)
T ss_dssp CCCCSSTTCEEEEEEEETTEEEEEEEEEEEEE
T ss_pred cccccCCCCEEEEEeCCCCCCCEEEEEEEEEE
Confidence 34678999999998742 478999998753
No 60
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=37.74 E-value=58 Score=26.21 Aligned_cols=51 Identities=12% Similarity=0.199 Sum_probs=40.4
Q ss_pred cccceeeeeeCCCCCeeeeEEeeecC-CeEEEEEecCCcEEEEeCCCcccCC
Q psy5412 31 WTQKRLVWVPHENQGFVAAGIKGELG-DSVEVELVETGKRIVVPKDDIQKMN 81 (116)
Q Consensus 31 ~~~g~~vWv~d~~~~~v~a~V~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~n 81 (116)
+..|..|=....+..|..|.|.+..+ +.+.|...+.|.+..++.+++.++.
T Consensus 412 ~~~G~~c~a~~~d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 412 PRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLS 463 (570)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCC
T ss_pred CCcCCEEEEEECCCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEEHHHCccCC
Confidence 56788887776567799999998765 7888887789998888888776654
No 61
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=32.73 E-value=1.2e+02 Score=20.75 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=31.8
Q ss_pred ccceeeeeeCCCCC-eeeeEEeee-cCCeEEEEEecCCcEEEEeCCCcc
Q psy5412 32 TQKRLVWVPHENQG-FVAAGIKGE-LGDSVEVELVETGKRIVVPKDDIQ 78 (116)
Q Consensus 32 ~~g~~vWv~d~~~~-~v~a~V~~~-~~~~~~v~~~~~g~~~~v~~~~~~ 78 (116)
..|.+|.-.=.... |-+|+|... .+++..|.. +||...+++..++.
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~~~~Y~V~F-dDG~~k~v~~~div 57 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLF-DDGYECDVLGKDIL 57 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCTTTEEEEEC-TTSCEEEEETTTEE
T ss_pred hhccEEEEEcCCCCcccccEEEEeccCCEEEEEE-cCCCeeEeeccceE
Confidence 45677765533444 559999975 456788864 99999888866543
No 62
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=32.42 E-value=53 Score=20.79 Aligned_cols=27 Identities=11% Similarity=0.019 Sum_probs=22.7
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeeec
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGEL 55 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~~ 55 (116)
...|..|.+|+|.+ ...|-.|+|++..
T Consensus 20 ~~~f~vGekVl~~~-~~~~YeAkIl~v~ 46 (102)
T 2f5k_A 20 KPKFQEGERVLCFH-GPLLYEAKCVKVA 46 (102)
T ss_dssp SCSCCTTCEEEEES-SSSEEEEEEEEEE
T ss_pred CcccCCCCEEEEEE-CCEEEEEEEEEEE
Confidence 45799999999998 6789999998753
No 63
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=31.88 E-value=81 Score=18.59 Aligned_cols=51 Identities=16% Similarity=-0.152 Sum_probs=36.4
Q ss_pred cccccceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCccc
Q psy5412 29 AEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 29 ~~~~~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
-.|..|++|=|-.....=..|.|+..+++.+++-.+...++++|-..++..
T Consensus 16 K~F~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V~~~dL~~ 66 (69)
T 2do3_A 16 KYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQL 66 (69)
T ss_dssp SSCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEE
T ss_pred eeccCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCCCCEEEEEhHHhhh
Confidence 357999999998765544567788888888877544456677777766643
No 64
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.41 E-value=92 Score=18.43 Aligned_cols=47 Identities=17% Similarity=0.137 Sum_probs=30.9
Q ss_pred cceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCcEEEEeCCCccc
Q psy5412 33 QKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQK 79 (116)
Q Consensus 33 ~g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~~~~~~ 79 (116)
.|..|=|....--=..+.|+...+..+.|++....++++++.+.+..
T Consensus 20 iGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K~VtV~r~~l~~ 66 (71)
T 2e70_A 20 IGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTT 66 (71)
T ss_dssp TTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEECTTTEEE
T ss_pred CCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCceEEEEEhhhccc
Confidence 44555555422111357788888899999975566788887776643
No 65
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=26.63 E-value=95 Score=19.56 Aligned_cols=28 Identities=4% Similarity=0.035 Sum_probs=22.5
Q ss_pred cccccccceeeeeeCC----CCCeeeeEEeee
Q psy5412 27 TQAEWTQKRLVWVPHE----NQGFVAAGIKGE 54 (116)
Q Consensus 27 ~~~~~~~g~~vWv~d~----~~~~v~a~V~~~ 54 (116)
....|..|.+|.|-++ ...+-.|.|+..
T Consensus 16 ~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v 47 (101)
T 3m9q_A 16 ETPLFHKGEIVLCYEPDKSKARVLYTSKVLNV 47 (101)
T ss_dssp CCCCCCTTCEEEEECCCTTSCCCEEEEEEEEE
T ss_pred CCCcccCCCEEEEEecCCCCCCcceEeEEEEE
Confidence 3567999999999986 466778998875
No 66
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=24.00 E-value=1.1e+02 Score=17.44 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=29.8
Q ss_pred ccccccceeeeeeCCCCCeeeeEEeee--cCCeEEEEEe
Q psy5412 28 QAEWTQKRLVWVPHENQGFVAAGIKGE--LGDSVEVELV 64 (116)
Q Consensus 28 ~~~~~~g~~vWv~d~~~~~v~a~V~~~--~~~~~~v~~~ 64 (116)
...|..|.++=+.|+..-|..|+|.+. .++.+.|...
T Consensus 10 ~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~~~~~Vhfd 48 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNWYPAHIEDIDYEEGKVLIHFK 48 (69)
T ss_dssp TCCCSTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEET
T ss_pred CCCcCCCCEEEEEECCCCccccEEEEEeccCCEEEEEeC
Confidence 467899999988887777899999986 6778877763
No 67
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=23.09 E-value=1.4e+02 Score=19.33 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=24.7
Q ss_pred eeEEeee-cCCeEEEEEecCCcEEEEeCCCcccCCC
Q psy5412 48 AAGIKGE-LGDSVEVELVETGKRIVVPKDDIQKMNP 82 (116)
Q Consensus 48 ~a~V~~~-~~~~~~v~~~~~g~~~~v~~~~~~~~np 82 (116)
.|.|.+. .++.++|.+.++|..+.+.++.+...=|
T Consensus 36 KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP 71 (127)
T 2ckk_A 36 KAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIP 71 (127)
T ss_dssp EEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCC
T ss_pred eEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecC
Confidence 3667665 4668888876788888888877765544
No 68
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=52 Score=20.18 Aligned_cols=28 Identities=14% Similarity=-0.023 Sum_probs=22.8
Q ss_pred ccccccceeeeeeC----CCCCeeeeEEeeec
Q psy5412 28 QAEWTQKRLVWVPH----ENQGFVAAGIKGEL 55 (116)
Q Consensus 28 ~~~~~~g~~vWv~d----~~~~~v~a~V~~~~ 55 (116)
...|..|.+|.|.+ ....|-.|+|++..
T Consensus 7 ~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~ 38 (87)
T 2eko_A 7 GGEIIEGCRLPVLRRNQDNEDEWPLAEILSVK 38 (87)
T ss_dssp SCSCCTTCEEEBCEECTTCCEECCEEEEEEEC
T ss_pred cccccCCCEEEEEEcccCCCCeEEEEEEEEEE
Confidence 46788999999987 36679999999864
No 69
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=22.67 E-value=1.7e+02 Score=19.14 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=31.4
Q ss_pred ceeeeeeCCCCCeeeeEEeeecCCeEEEEEecCCc-EEEEeCCCccc
Q psy5412 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGK-RIVVPKDDIQK 79 (116)
Q Consensus 34 g~~vWv~d~~~~~v~a~V~~~~~~~~~v~~~~~g~-~~~v~~~~~~~ 79 (116)
+..|=|...+..|-+|.|.....+.++|....+-+ ..++..+++-+
T Consensus 5 ~~~VEV~~~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRl 51 (128)
T 3h8z_A 5 GLPVEVRGSNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRL 51 (128)
T ss_dssp TCEEEEECTTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEEC
T ss_pred ccEEEEecCCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEc
Confidence 34444555667899999999888999998743322 45666666544
No 70
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=21.53 E-value=94 Score=19.32 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=19.5
Q ss_pred ccceeeeeeCCCCCeeeeEEeee
Q psy5412 32 TQKRLVWVPHENQGFVAAGIKGE 54 (116)
Q Consensus 32 ~~g~~vWv~d~~~~~v~a~V~~~ 54 (116)
+.|.+|+|.+....|-.|+|++.
T Consensus 16 ~~~e~vlc~~~dg~~yeAeIl~i 38 (92)
T 2bud_A 16 NPDKIYFIRREDGTVHRGQVLQS 38 (92)
T ss_dssp CTTSCEEEECTTSCEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEEEE
Confidence 55889999997778999999875
No 71
>3mh9_C Lipoprotein LPRG; mutant LPRG, glycolipid binding protein, lipid protein, structural genomics, TB structural genomics consor TBSGC; 1.79A {Mycobacterium tuberculosis} SCOP: b.125.1.0 PDB: 3mha_A* 3mh8_A*
Probab=20.39 E-value=1.6e+02 Score=20.85 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=24.7
Q ss_pred ceeeeeeCCC-CCeeeeEEeeecCCeEEEEEecCCcEEEEeC
Q psy5412 34 KRLVWVPHEN-QGFVAAGIKGELGDSVEVELVETGKRIVVPK 74 (116)
Q Consensus 34 g~~vWv~d~~-~~~v~a~V~~~~~~~~~v~~~~~g~~~~v~~ 74 (116)
.-.+||.+.. ..-+.+++....+..+++...+.|+.++|..
T Consensus 165 ~~~lWId~dg~~~lvr~~~~~~~g~t~t~t~sd~g~pV~V~a 206 (218)
T 3mh9_C 165 PATVWIQETGDHQLAQAQLDRGSGNSVQMTLSKWGEKVQVTK 206 (218)
T ss_dssp EEEEEEESSTTCCEEEEEEEEETTEEEEEEEESTTCCCCCCC
T ss_pred eEEEEECCCCCCceEEEEEEcCCCcEEEEEehhCCCeeeeeC
Confidence 3479998642 4555565543334367777667787665543
Done!