RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5412
(116 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 147 bits (372), Expect = 1e-42
Identities = 72/111 (64%), Positives = 86/111 (77%)
Query: 6 DPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVE 65
P D K+L VD+N N+P QA+W+ K+LVWVP E GF AA IK E GD V VEL E
Sbjct: 3 KPLSDDEKFLFVDKNFVNNPLAQADWSAKKLVWVPSEKHGFEAASIKEEKGDEVTVELQE 62
Query: 66 TGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
GK++ + KDDIQKMNPPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 63 NGKKVTLSKDDIQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 113
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 144 bits (364), Expect = 2e-41
Identities = 57/113 (50%), Positives = 77/113 (68%), Gaps = 1/113 (0%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVEL 63
++D +DPD +YL+VDR T A + K+ WVP E +GF +A I+ GD + V++
Sbjct: 2 NIDFSDPDFQYLAVDRKKLMKEQTAA-FDGKKNCWVPDEKEGFASAEIQSSKGDEITVKI 60
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V V KDDIQ MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 61 VADSSTRTVKKDDIQSMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 113
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 132 bits (333), Expect = 3e-37
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MATDLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWV---PHENQGFVAAGIKGELGD 57
M D KYL V + + + + KR +W P E + I E D
Sbjct: 1 MNPIHDRTSDYHKYLKVKQG--DSDLFKLTVSDKRYIWYNPDPDERDSYECGEIVSETSD 58
Query: 58 SVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
S + G+ V KDD + NP KFD VEDM++L+ LNE +V HN++ RY LIY
Sbjct: 59 SFTFKT-VDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIY 116
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 129 bits (326), Expect = 3e-36
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MATDLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWV---PHENQGFVAAGIKGELGD 57
M D KYL V + + + + KR +W P E + I E D
Sbjct: 1 MNPIHDRTSDYHKYLKVKQG--DSDLFKLTVSDKRYIWYNPDPKERDSYECGEIVSETSD 58
Query: 58 SVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
S + G+ V KDD + NP KFD VEDM++L+ LNE +V HN++ RY LIY
Sbjct: 59 SFTFKT-VDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIY 116
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 128 bits (323), Expect = 5e-36
Identities = 58/89 (65%), Positives = 72/89 (80%)
Query: 28 QAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDK 87
Q EWT +RLVWVP E GF AA ++ E + EVEL E+G+R+ +P+D IQ+MNPPKF K
Sbjct: 2 QVEWTARRLVWVPSELHGFEAAALRDEGEEEAEVELAESGRRLRLPRDQIQRMNPPKFSK 61
Query: 88 VEDMADLTCLNEASVLHNIKDRYYSGLIY 116
EDMA+LTCLNEASVLHN+++RYYSGLIY
Sbjct: 62 AEDMAELTCLNEASVLHNLRERYYSGLIY 90
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 125 bits (317), Expect = 4e-35
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 35 RLVWVPHENQGFVAAGIKGELGDSVEVELV-ETGKRIVVPKDDIQKMNPPKFDKVEDMAD 93
+ VW PH GF I DS+ +E + + GK + + + VED
Sbjct: 1 KPVWAPHPTDGFQVGNIVDIGPDSLTIEPLNQKGKTFLALINQVFPAEEDSKKDVEDNCS 60
Query: 94 LTCLNEASVLHNIKDRYYSGLIY 116
L LNEA++LHNIK RY IY
Sbjct: 61 LMYLNEATLLHNIKVRYSKDRIY 83
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 120 bits (302), Expect = 5e-33
Identities = 47/115 (40%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 9 DPDMK-------YLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVEV 61
D +M YL A + K+ V+VP + Q FV A I G V
Sbjct: 3 DSEMAVFGAAAPYLRKSEKERL-EAQTRPFDLKKDVFVPDDKQEFVKAKIVSREGGKVTA 61
Query: 62 ELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
E E GK + V +D + + NPPKFDK+EDMA LT L+E +VL+N+KDRY S +IY
Sbjct: 62 ET-EYGKTVTVKEDQVMQQNPPKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIY 115
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 105 bits (264), Expect = 6e-28
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 26 ATQAEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQK---- 79
A +T+ VW+P + + +A + + GD V +E GK + D K
Sbjct: 2 AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPP 61
Query: 80 -MNPPKFDKVEDMADLTCLNEASVLHNIKDRYY-SGLIY 116
NP D+ L+ L+E +VLHN+K R+ S LIY
Sbjct: 62 LRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIY 100
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 105 bits (263), Expect = 9e-28
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 26 ATQAEWTQKRLVWVPHENQGFVAAGIKGEL--GDSVEVELVETGKRIVVPKDDIQK---- 79
A +T+ VW+P + + +A + + GD V +E GK + D K
Sbjct: 2 AASELYTKYARVWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPP 61
Query: 80 -MNPPKFDKVEDMADLTCLNEASVLHNIKDRY--------YSGLI 115
NP D+ L+ L+E +VLHN+K R+ Y G++
Sbjct: 62 LRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIV 106
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 68.0 bits (167), Expect = 7e-15
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 80 MNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
+ K + V D L + E + + N+ R+ S IY
Sbjct: 2 IPKTKAEGVPDFVLLNQITENAFIENLTMRHKSDNIY 38
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 31.0 bits (71), Expect = 0.051
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 46 FVAAGIKGELGDSVEVELVETGKRIVVPKD 75
F A V L +G +P +
Sbjct: 225 FGATNTNARENTPFTVRLSRSGTSFEIPAN 254
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid,
lipoyl, transport protein; 1.30A {Escherichia coli}
PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Length = 128
Score = 26.0 bits (58), Expect = 2.0
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 38 WVPHENQGFVAAGI----KGELGDSVEVELVETGKRI 70
W+ E G GI + LGD V V+L E G +
Sbjct: 15 WLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATV 51
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW,
SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB:
3ift_A
Length = 155
Score = 26.2 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 38 WVPHENQGFVAAGI----KGELGDSVEVELVETGKRI 70
W+ V GI + LGD V V+L G +
Sbjct: 37 WIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAV 73
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.34.9.1
Length = 110
Score = 25.9 bits (57), Expect = 2.4
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 41 HENQGFVAAGIKGELGD-SVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMA 92
N + A + G L + ++++ V+ G P D++ + F + A
Sbjct: 44 PTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL-RSDFLSLPFQA 95
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB:
1e9z_A*
Length = 238
Score = 26.2 bits (58), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 47 VAAG--IKGELGDSVEVELVE-TGKRIV 71
+AAG ++ E G+ VEL++ G R +
Sbjct: 168 IAAGTAVRFEPGEEKSVELIDIGGNRRI 195
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron
metalloenzyme, alpha-beta barrel, hydrolase; HET: FME
KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Length = 225
Score = 26.2 bits (58), Expect = 2.8
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 47 VAAG--IKGELGDSVEVELVE-TGKRIV 71
+ +G ++ G++ V L+ G + +
Sbjct: 168 IPSGNTLRIGAGETKTVHLIPIGGSKKI 195
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain,
cytoskeleton, phosphorylation, structural protein,
actin- binding protein; NMR {Mus musculus}
Length = 189
Score = 25.8 bits (56), Expect = 3.2
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 52 KGELGDSVEVELVETGKRIVVPKDDIQKMNP 82
+ E EL+ I ++++ P
Sbjct: 5 FTDPTVIAENELLGAAAAIEAAAKKLEQLKP 35
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 25.6 bits (55), Expect = 4.6
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 23 NDPATQAEWTQKRLVWV--PHENQGFVAAGIKGELGDS-VEVELVETGKRIVVPKDDIQK 79
+ P + + +R + + + A ++ + + V ++ G R V+P +
Sbjct: 402 SHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGT 461
Query: 80 MNPPKF 85
+ P F
Sbjct: 462 L-SPAF 466
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics,
PSI-2, protein structure initiative; 1.43A {Bacteroides
vulgatus atcc 8482} PDB: 3lax_A
Length = 109
Score = 25.0 bits (55), Expect = 5.3
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 9/34 (26%)
Query: 47 VAAGIKGELGDSVEVELVETG---------KRIV 71
+ +K E+ + V+LV G R+
Sbjct: 70 ITRQLKDEILVTPRVKLVPKGALPKSEGKAVRVK 103
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 25.3 bits (56), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 7/33 (21%)
Query: 41 HENQGFVAAGIKGELGDSVEVELVETGKRIVVP 73
HE G V E G +VEL++ G + VP
Sbjct: 66 HEITGEVV-----EKGS--DVELMDIGDLVSVP 91
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 25.3 bits (56), Expect = 5.9
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 41 HENQGFVAAGIKGELGDSVEVELVETGKRIVVP 73
HE G V E G +VE ++ G + VP
Sbjct: 67 HEITGEVI-----EKGR--DVENLQIGDLVSVP 92
>2e70_A Transcription elongation factor SPT5; KOW motif, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 71
Score = 24.1 bits (52), Expect = 6.8
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 51 IKGELGDSVEVELVETGKRIVVPKDDI 77
+K + VEL T + I V + +
Sbjct: 38 VKDATESTARVELHSTCQTISVDRQRL 64
>1ejx_B Urease beta subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.85.3.1 PDB:
1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B*
1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1fwa_B* 1fwb_B*
1fwc_B* 1fwd_B* 1fwe_B* 1fwf_B* 1fwg_B* 1fwh_B* ...
Length = 101
Score = 24.3 bits (53), Expect = 7.9
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 47 VAAG--IKGELGDSVEVELVE-TGKRIV 71
+ AG ++ E G EVELV G R V
Sbjct: 63 IPAGTAVRFEPGQKREVELVAFAGHRAV 90
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 25.0 bits (55), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 54 ELGDSVEVELVETGKRIVV 72
G+ V V+L G+ I V
Sbjct: 237 RFGEVVTVDLKPDGRNIEV 255
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A
{Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 24.8 bits (55), Expect = 9.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 54 ELGDSVEVELVETGKRIVVPKDD 76
L D + VE V +G P
Sbjct: 34 SLADRLVVEPVSSGLHFQGPYGR 56
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 24.9 bits (55), Expect = 9.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 54 ELGDSVEVELVETGKRIVV 72
E G + +L G I+V
Sbjct: 211 EFGVAEVRDLKPNGANILV 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 10.0
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 32/123 (26%)
Query: 4 DLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHE-------------NQGFVAAG 50
P+ Y+ +ND A K V + + G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 51 IKGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVE--DMADLTCLNEASVLHNIKD 108
+ G G + + V +Q K+ ++ C + +VL ++
Sbjct: 158 VLG-SGKTW---VALD----VCLSYKVQCKMD---FKIFWLNLK--NCNSPETVLEMLQK 204
Query: 109 RYY 111
Y
Sbjct: 205 LLY 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.402
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,881,571
Number of extensions: 103488
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 41
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.6 bits)