RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5412
(116 letters)
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 92.1 bits (228), Expect = 1e-23
Identities = 27/55 (49%), Positives = 41/55 (74%)
Query: 62 ELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
+ + ++ ++ + MNPPKF+K+EDMA++T LNEASVL+N++ RY SGLIY
Sbjct: 11 QYLAVDRKKLMKEQTAAFMNPPKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIY 65
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 85.9 bits (212), Expect = 2e-21
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 58 SVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
L ++ K + ++ MNPPK+DK+EDMA +T L+E +VL+N+K+RY + +IY
Sbjct: 9 EAAPYLRKSEKERIEAQNKPFDMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIY 67
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 80.9 bits (199), Expect = 1e-19
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 64 VETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
+ D ++ NP KFD VEDM++L+ LNE +V HN++ RY LIY
Sbjct: 18 QGDSDLFKLTVSD-KRRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIY 69
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
{Chicken (Gallus gallus), pectoral muscle [TaxId:
9031]}
Length = 46
Score = 71.2 bits (175), Expect = 1e-18
Identities = 30/46 (65%), Positives = 33/46 (71%)
Query: 36 LVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQKMN 81
LVWVP E GF AA IK E GD V VEL E GK++ + KDDIQKMN
Sbjct: 1 LVWVPSEKHGFEAASIKEEKGDEVTVELQENGKKVTLSKDDIQKMN 46
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 72.5 bits (177), Expect = 9e-17
Identities = 29/35 (82%), Positives = 34/35 (97%)
Query: 82 PPKFDKVEDMADLTCLNEASVLHNIKDRYYSGLIY 116
PPKF KVEDMA+LTCLNEASVLHN+++RY+SGLIY
Sbjct: 1 PPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIY 35
>d1kk8a1 b.34.3.1 (A:29-76) Myosin S1 fragment, N-terminal domain
{Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 48
Score = 62.4 bits (152), Expect = 3e-15
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78
K+ WVP E +GF +A I+ GD + V++V V KDDIQ
Sbjct: 3 KKNCWVPDEKEGFASAEIQSSKGDEITVKIVADSSTRTVKKDDIQ 47
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 67.5 bits (164), Expect = 5e-15
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 81 NPPKFDKVEDMADLTCLNEASVLHNIKDRYYSG-LIY 116
NP D+ L+ L+E +VLHN+K R+ LIY
Sbjct: 2 NPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIY 38
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 58.2 bits (140), Expect = 9e-12
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 88 VEDMADLTCLNEASVLHNIKDRYYSGLIY 116
V D L + E + + N+ R+ S IY
Sbjct: 2 VPDFVLLNQITENAFIENLTMRHKSDNIY 30
>d2mysa1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
{Chicken (Gallus gallus), pectoral muscle [TaxId:
9031]}
Length = 46
Score = 51.9 bits (125), Expect = 3e-11
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 34 KRLVWVPHENQGFVAAGIKGELGDSVEVELVETGKRIVVPKDDIQ 78
K V+V H Q FV I+ + G V V+ E G+ + V +D +
Sbjct: 2 KSSVFVVHPKQSFVKGTIQSKEGGKVTVKT-EGGETLTVKEDQVF 45
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 28.3 bits (63), Expect = 0.082
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 23 NDPATQAEWTQKR--LVWVPHENQGFVAAGIKGELGDS-VEVELVETGKRIVVPKDDIQK 79
+ P + + +R + + A ++ + + V ++ G R V+P +
Sbjct: 16 SHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGT 75
Query: 80 MNPPKFD 86
+ P F
Sbjct: 76 L-SPAFS 81
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain
{Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Length = 58
Score = 26.3 bits (58), Expect = 0.25
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 37 VWVPHENQGFVAAGIKG--ELGDSVEVELVETGKRIVVPKDDIQKMNPP 83
VW+P + + +A + + GD V +E GK + D K PP
Sbjct: 9 VWIPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPP 57
>d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 25.9 bits (57), Expect = 0.94
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 52 KGELGDSVEVELVETGKRIVVPKDDIQKMNPPKFDKVEDM 91
+ ELG V+ E+ T I I+ M +
Sbjct: 4 QEELGAVVDKEMAATSAAIEDAVRRIEDMMNQARHASSGV 43
>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii
[TaxId: 1474]}
Length = 122
Score = 25.1 bits (55), Expect = 1.9
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 47 VAAG--IKGELGDSVEVELVE-TGKRIVV 72
+ +G + E G+ +EVEL E G R V
Sbjct: 65 IPSGTAARFEPGEEMEVELTELGGNREVF 93
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 195
Score = 24.6 bits (53), Expect = 2.8
Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 8/108 (7%)
Query: 1 MATDLDPNDPDMKYLSVDRNAFNDPATQAEWTQKRLVWVPHENQGFVAAGIKGELGDSVE 60
+D P + A N+ A + + +V H + +V + + G
Sbjct: 86 KLSDYFPKPYPNPEAA---RAANNGALPPDLSY--IVRARHGGEDYVFSLLTGYCEPPTG 140
Query: 61 VELVETGKRIVVPKDDIQKMNPPKFDKVEDMADLTCLNEASVLHNIKD 108
V L E M PP +++V + D T A++ KD
Sbjct: 141 VSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGT---PATMSQVAKD 185
>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase,
C-terminal domain {Pseudomonas cepacia, db01 [TaxId:
292]}
Length = 98
Score = 23.7 bits (51), Expect = 3.9
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 46 FVAAGIKGELGDSVEVELVETGKRIVVPKDD 76
F A V L +G +P +
Sbjct: 2 FGATNTNARENTPFTVRLSRSGTSFEIPANR 32
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes
[TaxId: 28451]}
Length = 101
Score = 23.5 bits (51), Expect = 4.9
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 47 VAAG--IKGELGDSVEVELVE-TGKRIV 71
+ AG ++ E G EVELV G R V
Sbjct: 63 IPAGTAVRFEPGQKREVELVAFAGHRAV 90
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 64
Score = 23.0 bits (49), Expect = 6.1
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 33 QKRLVWVPHENQGFVAA 49
+ R++W + F+AA
Sbjct: 5 KPRVLWTHELHNKFLAA 21
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3,
TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 22.4 bits (48), Expect = 7.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 56 GDSVEVELVETGKRIVVPKDDIQKMNP 82
G + V+ + G V +I+ +
Sbjct: 31 GMTAVVKFTDYGNYEEVLLSNIKPVQT 57
>d1xw3a1 d.268.1.4 (A:28-137) Sulfiredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 22.9 bits (49), Expect = 8.9
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 72 VPKDDIQKMNPPKFD--KVEDMAD 93
VP + + P D KV+ + D
Sbjct: 17 VPLSVLIRPLPSVLDPAKVQSLVD 40
>d2od0a1 d.198.5.2 (A:3-105) Hypothetical protein VP1028 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 103
Score = 22.9 bits (49), Expect = 9.6
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 12 MKYLSVDRNAFNDPATQAEWTQK 34
KY ++ + E +K
Sbjct: 74 TKYYAISSELWESSDRLIEVAKK 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.402
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 455,189
Number of extensions: 19114
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 25
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)