BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5413
(285 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
+D+RSDT++KPT EM+ M EVGDDVY EDPT +FVPSGTMG
Sbjct: 6 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
N ++IM H R D I+ D SHI +E G + S +M K+G D D
Sbjct: 66 NQVSIMAHTQRGDEVILEAD-SHIFWYEVGAMAVLSG-------VMPHPVPGKNGAMDPD 117
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
++ K NIH TSL+ +ENTHN GG V+P++ ++E+ +EH I VH+DGAR+
Sbjct: 118 DVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 176
Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
P+ E D+VMFCLS GL APVGS++ G +FI++
Sbjct: 177 FNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 222
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 18/226 (7%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
+D+RSDT++KPT EM+ M EVGDDVY EDPT +FVPSGTMG
Sbjct: 14 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 73
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
N ++IM H R D I+ D SHI +E G + S +M K+G D D
Sbjct: 74 NQVSIMAHTQRGDEVILEAD-SHIFWYEVGAMAVLSG-------VMPHPVPGKNGAMDPD 125
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
++ K NIH TSL+ +ENTHN GG V+P++ ++E+ +EH I VH+DGAR+
Sbjct: 126 DVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 184
Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
P+ E D+VMFCLS GL APVGS++ G +FI++
Sbjct: 185 FNASIASGVPVKEYAGYADSVMFCLSXGLCAPVGSVVVGDRDFIER 230
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 123/230 (53%), Gaps = 26/230 (11%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCXXXXXXXXXXXXXXXXIFVPSGTMG 128
+D+RSDT++KPT E + EVGDDVY EDPT +FVPSGT G
Sbjct: 6 IDLRSDTVTKPTEEXRKAXAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTXG 65
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----KDGT 184
N ++I H R D I+ D SHI +E G + ++ GV K+G
Sbjct: 66 NQVSIXAHTQRGDEVILEAD-SHIFWYEVGAXA-----------VLSGVXPHPVPGKNGA 113
Query: 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
D D++ K NIH TSL+ +ENTHN GG V+P++ ++E+ +EH I VH+D
Sbjct: 114 XDPDDVR-KAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHID 172
Query: 245 GARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
GAR+ P+ E D+V FCLS GL APVGS++ G +FI++
Sbjct: 173 GARIFNASIASGVPVKEYAGYADSVXFCLSXGLCAPVGSVVVGDRDFIER 222
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 69/175 (39%), Gaps = 26/175 (14%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178
+F PSGT +A+ D D+ + H+ + EQ G + I +
Sbjct: 66 VFFPSGTXAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETI-------LV 118
Query: 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238
D LDE++A +I C + +E GG L + C+E
Sbjct: 119 GAADRLXTLDEIKA----LPDIAC-----LLLELPQREIGGVAPAFSELETISRYCRERG 169
Query: 239 IPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284
I +H+DGARL AE+ D++ GLG G+ILAGP F Q
Sbjct: 170 IRLHLDGARLFEXLPYYEKTAAEIAGLFDSIYISFYXGLGGIAGAILAGPAAFCQ 224
>pdb|3PJ0|A Chain A, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|B Chain B, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|C Chain C, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
pdb|3PJ0|D Chain D, Crystal Structure Of A Putative L-Allo-Threonine Aldolase
(Lmo0305) From Listeria Monocytogenes Egd-E At 1.80 A
Resolution
Length = 359
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSE-IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178
+F PSGT IA+ DR+++ + SH+ + EQ G + QI +L+ G
Sbjct: 67 VFFPSGTXAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQ---QITPLLL-GTA 122
Query: 179 NQKDGTFDLDEMEAKFSTADNIHC--ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236
NQ T D+I S V +E GG + + L ++ C E
Sbjct: 123 NQ-------------LLTIDDIKSLREPVSSVLIELPQREIGGQLPAFEELEKISEYCHE 169
Query: 237 HNIPVHMDGARL----PL-----AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
I +H+DGARL P E+CA D+V G+G G+ILAG ++F+Q+
Sbjct: 170 QGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYXGIGGIAGAILAGNDDFVQE 227
>pdb|1SVV|A Chain A, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
pdb|1SVV|B Chain B, Initial Stuctural Analysis Of Leishmania Major Threonine
Aldolase
Length = 359
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 53/132 (40%), Gaps = 13/132 (9%)
Query: 121 FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180
F+ GT NLIA R +I HI E G T + VT
Sbjct: 71 FISGGTQTNLIACSLAL-RPWEAVIATQLGHISTHETGAIEATG---------HKVVTAP 120
Query: 181 -KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
DG + ++E+ + H LV + NT GT Q L ++ A C+EH +
Sbjct: 121 CPDGKLRVADIESALHENRSEHXVIPKLVYISNTTEV--GTQYTKQELEDISASCKEHGL 178
Query: 240 PVHMDGARLPLA 251
+ +DGARL A
Sbjct: 179 YLFLDGARLASA 190
>pdb|1AX4|A Chain A, Tryptophanase From Proteus Vulgaris
pdb|1AX4|B Chain B, Tryptophanase From Proteus Vulgaris
pdb|1AX4|C Chain C, Tryptophanase From Proteus Vulgaris
pdb|1AX4|D Chain D, Tryptophanase From Proteus Vulgaris
Length = 467
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 183 GTFDLDEMEAKFST--ADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
G FD+ +++ + ADNI +++ C N GG + M L+E+ ++H I
Sbjct: 165 GDFDIKKLKENIAQHGADNIVAIVSTVTC-----NSAGGQPVSMSNLKEVYEIAKQHGIF 219
Query: 241 VHMDGARL 248
V MD AR
Sbjct: 220 VVMDSARF 227
>pdb|2V1P|A Chain A, Crystal Structure Of The Apo Form Of Y74f Mutant E. Coli
Tryptophanase
Length = 467
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235
GV G FDL+ +E + + + + T N GG + + L+ + + +
Sbjct: 158 GVRYDFKGNFDLEGLE---RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214
Query: 236 EHNIPVHMDGARL 248
+++IPV MD AR
Sbjct: 215 KYDIPVVMDSARF 227
>pdb|2V0Y|A Chain A, Crystal Structure Of Apo C298s Tryptophanase From E.Coli
Length = 467
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235
GV G FDL+ +E + + + + T N GG + + L+ + + +
Sbjct: 158 GVRYDFKGNFDLEGLE---RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214
Query: 236 EHNIPVHMDGARL 248
+++IPV MD AR
Sbjct: 215 KYDIPVVMDSARF 227
>pdb|2OQX|A Chain A, Crystal Structure Of The Apo Form Of E. Coli Tryptophanase
At 1.9 A Resolution
Length = 467
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235
GV G FDL+ +E + + + + T N GG + + L+ + + +
Sbjct: 158 GVRYDFKGNFDLEGLE---RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 214
Query: 236 EHNIPVHMDGARL 248
+++IPV MD AR
Sbjct: 215 KYDIPVVMDSARF 227
>pdb|2C44|A Chain A, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|B Chain B, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|C Chain C, Crystal Structure Of E. Coli Tryptophanase
pdb|2C44|D Chain D, Crystal Structure Of E. Coli Tryptophanase
Length = 471
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235
GV G FDL+ +E + + + + T N GG + + L+ + + +
Sbjct: 162 GVRYDFKGNFDLEGLE---RGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK 218
Query: 236 EHNIPVHMDGARL 248
+++IPV MD AR
Sbjct: 219 KYDIPVVMDSARF 231
>pdb|1F0K|A Chain A, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1F0K|B Chain B, The 1.9 Angstrom Crystal Structure Of E. Coli Murg
pdb|1NLM|A Chain A, Crystal Structure Of Murg:glcnac Complex
pdb|1NLM|B Chain B, Crystal Structure Of Murg:glcnac Complex
Length = 364
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 146 VGDCSHIMLWEQGG-ASQTSV---YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH 201
+GD + +W Q G SQ SV Y++ G+ Q T +D+M A ++ AD +
Sbjct: 209 LGDS--VTIWHQSGKGSQQSVEQAYAEAGQ-------PQHKVTEFIDDMAAAYAWADVVV 259
Query: 202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-IPVHMDGARLPLAEVCASVDTV 260
C S +L E +P Q K R Q N +P+ GA + + SVD V
Sbjct: 260 CRSGALTVSEIAAAGLPALFVPFQ----HKDRQQYWNALPLEKAGAAKIIEQPQLSVDAV 315
Query: 261 MFCLS 265
L+
Sbjct: 316 ANTLA 320
>pdb|1TVM|A Chain A, Nmr Structure Of Enzyme Gatb Of The Galactitol-Specific
Phosphoenolpyruvate-Dependent Phosphotransferase System
Length = 113
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 217 CGGTVL-PMQWLRELKARCQEHNIPVHMDGARL 248
CGG V E+K CQ HNIPV + R+
Sbjct: 28 CGGAVATSTMAAEEIKELCQSHNIPVELIQCRV 60
>pdb|1AKS|A Chain A, Crystal Structure Of The First Active Autolysate Form Of
The Porcine Alpha Trypsin
pdb|1UHB|A Chain A, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto
Catalyticaly Produced Native Peptide At 2.15 A
Resolution
Length = 125
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 202 CASTSL---VCVENTHNYCGGTVLPMQWL--------RELKARCQEHNIPV 241
CA+ S+ V + + ++CGG+++ QW+ ++ R EHNI V
Sbjct: 7 CAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDV 57
>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin
Length = 231
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 11/51 (21%)
Query: 202 CASTSL---VCVENTHNYCGGTVLPMQWL--------RELKARCQEHNIPV 241
CA+ S+ V + + ++CGG+++ QW+ ++ R EHNI V
Sbjct: 15 CAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDV 65
>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|B Chain B, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|D Chain D, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
pdb|4DG4|G Chain G, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic
Trypsin Inhibitor (Bpti)
Length = 224
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 202 CASTSL---VCVENTHNYCGGTVLPMQWL--------RELKARCQEHNIPV 241
C SL V + + +++CGG+++ QW+ ++ R EHNI V
Sbjct: 7 CEENSLPYQVSLNSGYHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKV 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,305,161
Number of Sequences: 62578
Number of extensions: 320997
Number of successful extensions: 788
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 29
length of query: 285
length of database: 14,973,337
effective HSP length: 98
effective length of query: 187
effective length of database: 8,840,693
effective search space: 1653209591
effective search space used: 1653209591
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)