Query psy5413
Match_columns 285
No_of_seqs 200 out of 1863
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:50:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1368|consensus 100.0 2E-36 4.3E-41 251.0 13.7 215 65-285 20-244 (384)
2 PF01212 Beta_elim_lyase: Beta 100.0 4.1E-32 8.9E-37 234.9 13.5 204 70-284 1-213 (290)
3 COG2008 GLY1 Threonine aldolas 100.0 2.8E-31 6.1E-36 227.7 17.5 208 68-284 1-218 (342)
4 COG4992 ArgD Ornithine/acetylo 100.0 5.8E-28 1.3E-32 211.2 17.0 217 28-278 26-267 (404)
5 PLN02721 threonine aldolase 99.9 1.7E-26 3.6E-31 206.8 18.7 212 67-284 6-226 (353)
6 cd06502 TA_like Low-specificit 99.9 1.2E-25 2.6E-30 200.1 18.6 205 70-284 1-214 (338)
7 COG0436 Aspartate/tyrosine/aro 99.9 1.2E-25 2.5E-30 203.2 16.0 201 66-284 28-257 (393)
8 COG0161 BioA Adenosylmethionin 99.9 4.9E-26 1.1E-30 203.4 12.8 233 27-280 27-301 (449)
9 PRK10534 L-threonine aldolase; 99.9 2.2E-24 4.8E-29 191.8 17.1 206 68-284 1-215 (333)
10 COG0160 GabT 4-aminobutyrate a 99.9 1.5E-23 3.3E-28 188.4 19.3 236 25-284 37-310 (447)
11 TIGR02617 tnaA_trp_ase tryptop 99.9 1.7E-23 3.6E-28 186.5 18.0 204 66-281 41-281 (467)
12 PRK13238 tnaA tryptophanase/L- 99.9 1.4E-23 3.1E-28 193.1 18.2 207 64-284 34-279 (460)
13 COG0001 HemL Glutamate-1-semia 99.9 4.2E-23 9.2E-28 182.6 15.4 231 26-284 35-287 (432)
14 PRK04013 argD acetylornithine/ 99.9 9.6E-23 2.1E-27 182.3 17.5 221 27-279 7-245 (364)
15 KOG0257|consensus 99.9 5.2E-23 1.1E-27 179.1 14.4 195 71-283 36-264 (420)
16 PRK04073 rocD ornithine--oxo-a 99.9 8.1E-23 1.8E-27 185.9 16.3 228 27-284 23-275 (396)
17 TIGR03246 arg_catab_astC succi 99.9 1.4E-22 3.1E-27 184.3 17.7 223 26-283 17-266 (397)
18 KOG1401|consensus 99.9 9.4E-23 2E-27 176.7 15.4 227 26-280 38-291 (433)
19 PRK09331 Sep-tRNA:Cys-tRNA syn 99.9 1.5E-22 3.4E-27 183.5 17.5 194 77-284 30-239 (387)
20 COG0156 BioF 7-keto-8-aminopel 99.9 8.7E-23 1.9E-27 181.6 15.1 199 65-284 38-259 (388)
21 PLN02482 glutamate-1-semialdeh 99.9 1.9E-22 4.2E-27 185.8 17.4 211 64-284 97-333 (474)
22 PRK13355 bifunctional HTH-doma 99.9 2.6E-22 5.7E-27 188.3 18.2 196 64-277 144-366 (517)
23 cd00617 Tnase_like Tryptophana 99.9 2.6E-22 5.6E-27 182.6 17.6 201 67-284 21-254 (431)
24 TIGR02618 tyr_phenol_ly tyrosi 99.9 2.8E-22 6.1E-27 180.1 17.2 202 66-284 38-272 (450)
25 PRK07482 hypothetical protein; 99.9 2.2E-22 4.7E-27 185.7 16.2 232 27-279 33-305 (461)
26 PRK01278 argD acetylornithine 99.9 6.2E-22 1.3E-26 179.8 18.2 222 27-283 14-262 (389)
27 PRK12389 glutamate-1-semialdeh 99.9 4.2E-22 9.1E-27 182.6 16.4 210 65-284 52-287 (428)
28 TIGR01822 2am3keto_CoA 2-amino 99.9 3.9E-22 8.4E-27 181.3 15.8 200 65-284 37-258 (393)
29 PRK11522 putrescine--2-oxoglut 99.9 5.3E-22 1.1E-26 182.7 16.7 225 27-279 64-316 (459)
30 PRK08960 hypothetical protein; 99.9 1E-21 2.2E-26 178.2 18.4 202 65-284 31-254 (387)
31 PRK12381 bifunctional succinyl 99.9 8E-22 1.7E-26 179.9 17.5 223 26-284 21-271 (406)
32 PRK07179 hypothetical protein; 99.9 6.4E-22 1.4E-26 180.7 16.5 193 65-283 53-267 (407)
33 PRK05965 hypothetical protein; 99.9 6.8E-22 1.5E-26 182.4 16.5 234 27-282 29-302 (459)
34 TIGR03372 putres_am_tran putre 99.9 9.8E-22 2.1E-26 179.9 17.4 212 65-283 74-312 (442)
35 PRK06207 aspartate aminotransf 99.9 9.4E-22 2E-26 179.4 17.2 202 65-284 38-271 (405)
36 PRK07681 aspartate aminotransf 99.9 1.8E-21 3.9E-26 177.3 17.7 202 65-284 31-259 (399)
37 cd06452 SepCysS Sep-tRNA:Cys-t 99.9 1.8E-21 4E-26 175.0 17.5 193 78-284 12-220 (361)
38 PLN00175 aminotransferase fami 99.9 8.5E-22 1.8E-26 180.0 15.6 201 66-284 54-279 (413)
39 PLN00145 tyrosine/nicotianamin 99.9 2.1E-21 4.5E-26 178.2 18.1 196 65-278 51-276 (430)
40 PRK03715 argD acetylornithine 99.9 1.4E-21 3.1E-26 177.2 16.8 225 26-282 18-265 (395)
41 PRK09147 succinyldiaminopimela 99.9 1.7E-21 3.6E-26 177.4 17.2 202 65-284 28-265 (396)
42 PLN02242 methionine gamma-lyas 99.9 1.4E-21 3.1E-26 178.1 16.7 193 72-284 41-244 (418)
43 PRK07366 succinyldiaminopimela 99.9 2.1E-21 4.6E-26 176.2 17.5 202 65-284 29-259 (388)
44 TIGR01821 5aminolev_synth 5-am 99.9 1.2E-21 2.5E-26 178.7 15.6 198 65-284 44-264 (402)
45 PRK08068 transaminase; Reviewe 99.9 2.7E-21 5.7E-26 175.6 17.9 202 65-284 31-260 (389)
46 PRK06767 methionine gamma-lyas 99.9 1.5E-21 3.3E-26 176.7 16.2 187 76-284 34-228 (386)
47 COG0520 csdA Selenocysteine ly 99.9 2.5E-21 5.4E-26 175.0 17.5 202 66-284 21-243 (405)
48 cd00614 CGS_like CGS_like: Cys 99.9 2.1E-21 4.5E-26 175.0 16.7 185 77-284 14-208 (369)
49 PRK06062 hypothetical protein; 99.9 2E-21 4.2E-26 178.9 16.8 235 27-283 36-302 (451)
50 PLN02624 ornithine-delta-amino 99.9 3.4E-21 7.3E-26 178.5 18.4 209 64-283 73-312 (474)
51 PRK06225 aspartate aminotransf 99.9 2.8E-21 6E-26 175.0 17.3 201 66-284 28-245 (380)
52 PRK00854 rocD ornithine--oxo-a 99.9 2.5E-21 5.3E-26 176.5 17.0 205 65-284 40-276 (401)
53 PRK12403 putative aminotransfe 99.9 2.6E-21 5.5E-26 178.6 17.3 236 26-283 36-310 (460)
54 TIGR03540 DapC_direct LL-diami 99.9 2.6E-21 5.7E-26 175.3 17.0 202 65-284 28-257 (383)
55 PRK05942 aspartate aminotransf 99.9 2.3E-21 5.1E-26 176.3 16.6 202 65-284 34-263 (394)
56 PRK05964 adenosylmethionine--8 99.9 1.9E-21 4E-26 178.3 16.0 231 26-283 24-288 (423)
57 PLN02656 tyrosine transaminase 99.9 2.6E-21 5.6E-26 176.8 16.8 197 64-278 29-255 (409)
58 PRK06943 adenosylmethionine--8 99.9 1.8E-21 3.9E-26 179.2 15.9 214 65-283 53-310 (453)
59 PLN00144 acetylornithine trans 99.9 2E-21 4.4E-26 175.6 15.9 208 65-284 14-255 (382)
60 PLN02822 serine palmitoyltrans 99.9 1.5E-21 3.3E-26 181.0 15.4 201 64-284 107-333 (481)
61 TIGR03537 DapC succinyldiamino 99.9 3.7E-21 8E-26 172.3 17.3 199 68-284 2-226 (350)
62 PRK05093 argD bifunctional N-s 99.9 3.6E-21 7.8E-26 175.5 17.5 207 65-284 39-272 (403)
63 PRK06916 adenosylmethionine--8 99.9 2.4E-21 5.2E-26 178.8 16.4 234 27-283 39-312 (460)
64 PRK07483 hypothetical protein; 99.9 4E-21 8.7E-26 176.5 17.6 233 26-279 12-285 (443)
65 PRK12414 putative aminotransfe 99.9 3.6E-21 7.7E-26 174.5 17.0 201 66-284 29-255 (384)
66 PRK07046 aminotransferase; Val 99.9 2.9E-21 6.4E-26 177.6 16.5 208 64-283 73-303 (453)
67 PLN02187 rooty/superroot1 99.9 9.3E-21 2E-25 175.2 19.4 196 65-278 65-290 (462)
68 PRK09276 LL-diaminopimelate am 99.9 4.6E-21 9.9E-26 173.8 17.0 202 65-284 30-259 (385)
69 PRK13392 5-aminolevulinate syn 99.9 2.2E-21 4.7E-26 177.4 14.9 198 65-284 45-265 (410)
70 PRK13237 tyrosine phenol-lyase 99.9 6.1E-21 1.3E-25 172.0 17.3 201 66-283 45-278 (460)
71 PRK07324 transaminase; Validat 99.9 1.4E-21 3.1E-26 176.4 13.3 201 65-284 25-242 (373)
72 PRK08360 4-aminobutyrate amino 99.9 4.6E-21 1E-25 176.1 16.7 236 27-284 24-292 (443)
73 TIGR03538 DapC_gpp succinyldia 99.9 5.3E-21 1.2E-25 173.9 16.9 202 65-284 27-264 (393)
74 PRK00615 glutamate-1-semialdeh 99.9 7.9E-21 1.7E-25 173.7 18.0 210 65-284 52-288 (433)
75 PRK09064 5-aminolevulinate syn 99.9 3.6E-21 7.7E-26 175.8 15.7 198 65-284 45-265 (407)
76 PRK08742 adenosylmethionine--8 99.9 4.1E-21 8.9E-26 177.3 16.2 213 65-282 63-324 (472)
77 PRK06290 aspartate aminotransf 99.9 7E-21 1.5E-25 173.7 17.5 201 65-284 43-271 (410)
78 TIGR00709 dat 2,4-diaminobutyr 99.9 7.7E-21 1.7E-25 174.9 17.7 251 11-280 4-291 (442)
79 PRK08361 aspartate aminotransf 99.9 5.2E-21 1.1E-25 173.8 16.4 201 66-284 33-257 (391)
80 PTZ00433 tyrosine aminotransfe 99.9 5.6E-21 1.2E-25 174.8 16.6 197 64-278 31-263 (412)
81 PRK09792 4-aminobutyrate trans 99.9 6.1E-21 1.3E-25 174.6 16.7 238 26-284 22-286 (421)
82 PLN00143 tyrosine/nicotianamin 99.9 1E-20 2.2E-25 172.8 18.1 197 64-278 30-256 (409)
83 TIGR01437 selA_rel uncharacter 99.9 5.5E-21 1.2E-25 171.7 16.1 183 79-284 25-227 (363)
84 PRK01533 histidinol-phosphate 99.9 1.9E-21 4.1E-26 175.0 12.8 198 66-284 29-242 (366)
85 PRK06938 diaminobutyrate--2-ox 99.9 7.3E-21 1.6E-25 175.5 16.9 234 27-279 46-315 (464)
86 PRK07309 aromatic amino acid a 99.9 1.2E-20 2.6E-25 171.5 18.1 204 66-284 30-257 (391)
87 PRK07337 aminotransferase; Val 99.9 8.5E-21 1.8E-25 172.2 17.1 202 65-284 29-252 (388)
88 PLN03227 serine palmitoyltrans 99.9 3.7E-21 8E-26 174.5 14.6 195 70-284 2-227 (392)
89 PRK07481 hypothetical protein; 99.9 8.7E-21 1.9E-25 174.7 17.1 233 26-279 24-298 (449)
90 PLN02760 4-aminobutyrate:pyruv 99.9 4.3E-21 9.3E-26 178.4 15.2 216 64-283 87-348 (504)
91 PRK07030 adenosylmethionine--8 99.9 5.9E-21 1.3E-25 176.2 15.9 234 27-283 30-303 (466)
92 PRK08363 alanine aminotransfer 99.9 1.2E-20 2.5E-25 171.9 17.6 200 65-282 29-257 (398)
93 TIGR01328 met_gam_lyase methio 99.9 7.6E-21 1.7E-25 172.3 16.3 163 99-284 57-226 (391)
94 PRK07682 hypothetical protein; 99.9 5.5E-21 1.2E-25 172.9 15.2 200 67-284 21-246 (378)
95 PRK15481 transcriptional regul 99.9 2.6E-21 5.7E-26 177.9 13.2 200 66-284 85-301 (431)
96 PRK07678 aminotransferase; Val 99.9 7.3E-21 1.6E-25 175.3 16.1 235 27-283 30-301 (451)
97 COG0079 HisC Histidinol-phosph 99.9 5.1E-21 1.1E-25 170.4 14.5 197 67-284 23-232 (356)
98 PRK08636 aspartate aminotransf 99.9 1.2E-20 2.6E-25 172.1 17.3 205 65-284 32-268 (403)
99 PRK13393 5-aminolevulinate syn 99.9 6.7E-21 1.5E-25 173.9 15.5 198 65-284 44-264 (406)
100 PRK06348 aspartate aminotransf 99.9 1.2E-20 2.6E-25 171.0 17.1 200 67-284 30-254 (384)
101 PRK06108 aspartate aminotransf 99.9 1.4E-20 3.1E-25 170.4 17.5 200 67-284 25-252 (382)
102 PRK08117 4-aminobutyrate amino 99.9 7.4E-21 1.6E-25 174.9 15.8 232 27-283 26-294 (433)
103 PRK07503 methionine gamma-lyas 99.9 9.9E-21 2.1E-25 172.2 16.3 163 99-284 63-232 (403)
104 PRK07480 putative aminotransfe 99.9 1E-20 2.2E-25 174.3 16.6 234 27-282 33-306 (456)
105 TIGR02407 ectoine_ectB diamino 99.9 1.5E-20 3.3E-25 171.5 17.5 235 26-279 17-279 (412)
106 PRK09264 diaminobutyrate--2-ox 99.9 2E-20 4.2E-25 171.5 18.2 234 26-278 21-282 (425)
107 PRK02936 argD acetylornithine 99.9 2E-20 4.3E-25 169.2 18.1 206 65-284 28-255 (377)
108 PRK06541 hypothetical protein; 99.9 1.5E-20 3.3E-25 173.3 17.6 232 27-279 35-306 (460)
109 PRK09028 cystathionine beta-ly 99.9 7.5E-21 1.6E-25 171.5 15.2 180 81-283 39-227 (394)
110 PRK05764 aspartate aminotransf 99.9 1.5E-20 3.3E-25 170.9 17.3 202 65-284 30-258 (393)
111 TIGR00700 GABAtrnsam 4-aminobu 99.9 1.5E-20 3.2E-25 172.2 17.1 238 26-284 15-285 (420)
112 PRK09265 aminotransferase AlaT 99.9 2.6E-20 5.7E-25 169.9 18.4 195 65-277 32-253 (404)
113 PRK08912 hypothetical protein; 99.9 1.5E-20 3.2E-25 170.6 16.7 201 66-284 26-252 (387)
114 PRK07683 aminotransferase A; V 99.9 2.7E-20 5.9E-25 168.9 18.3 201 66-284 28-253 (387)
115 PRK06105 aminotransferase; Pro 99.9 1.4E-20 3.1E-25 173.7 16.5 235 27-283 31-306 (460)
116 PLN02955 8-amino-7-oxononanoat 99.9 1.3E-20 2.8E-25 171.5 15.9 200 65-284 101-336 (476)
117 PRK07495 4-aminobutyrate amino 99.9 1.2E-20 2.5E-25 172.7 15.7 237 27-284 23-286 (425)
118 PLN02368 alanine transaminase 99.9 1.3E-20 2.8E-25 171.3 15.9 195 79-284 82-315 (407)
119 PRK06173 adenosylmethionine--8 99.9 1.1E-20 2.4E-25 172.8 15.5 224 29-278 29-291 (429)
120 TIGR01141 hisC histidinol-phos 99.9 5.8E-21 1.3E-25 170.7 13.4 199 66-284 19-230 (346)
121 PRK09105 putative aminotransfe 99.9 6.8E-21 1.5E-25 171.7 13.9 198 66-284 43-253 (370)
122 KOG1549|consensus 99.9 1.5E-20 3.3E-25 165.7 15.4 198 65-279 41-256 (428)
123 TIGR01325 O_suc_HS_sulf O-succ 99.9 1.9E-20 4E-25 169.3 16.2 163 99-284 52-221 (380)
124 TIGR01264 tyr_amTase_E tyrosin 99.9 2.9E-20 6.3E-25 169.5 17.6 197 65-279 30-255 (401)
125 TIGR00713 hemL glutamate-1-sem 99.9 1.3E-20 2.8E-25 172.9 15.3 210 65-284 47-282 (423)
126 TIGR02539 SepCysS Sep-tRNA:Cys 99.9 1.7E-20 3.7E-25 169.2 15.7 192 79-284 20-227 (370)
127 PRK04612 argD acetylornithine 99.9 2.5E-20 5.4E-25 169.6 16.8 228 25-283 21-274 (408)
128 PRK07504 O-succinylhomoserine 99.9 2.9E-20 6.4E-25 168.8 17.2 162 99-283 63-231 (398)
129 PRK06931 diaminobutyrate--2-ox 99.9 2.1E-20 4.5E-25 172.4 16.4 235 26-278 40-308 (459)
130 cd00613 GDC-P Glycine cleavage 99.9 2.9E-20 6.3E-25 169.2 17.2 203 66-284 20-244 (398)
131 PRK07777 aminotransferase; Val 99.8 3.1E-20 6.7E-25 168.5 17.1 200 67-284 25-252 (387)
132 cd06453 SufS_like Cysteine des 99.8 2.3E-20 5.1E-25 168.4 16.2 197 71-284 3-219 (373)
133 PRK07550 hypothetical protein; 99.8 2.6E-20 5.7E-25 168.9 16.6 202 65-284 28-256 (386)
134 PRK05639 4-aminobutyrate amino 99.8 1.7E-20 3.6E-25 172.8 15.4 217 65-283 52-309 (457)
135 PRK06777 4-aminobutyrate amino 99.8 2.2E-20 4.8E-25 170.9 16.0 237 27-284 23-286 (421)
136 PRK08593 4-aminobutyrate amino 99.8 1.8E-20 3.9E-25 172.4 15.5 237 27-284 25-295 (445)
137 KOG0259|consensus 99.8 5.3E-20 1.1E-24 158.2 17.1 194 66-277 61-284 (447)
138 PRK07810 O-succinylhomoserine 99.8 3.2E-20 6.9E-25 168.7 16.7 162 99-283 68-236 (403)
139 TIGR00858 bioF 8-amino-7-oxono 99.8 2.3E-20 4.9E-25 167.4 15.6 198 64-284 14-234 (360)
140 PRK06234 methionine gamma-lyas 99.8 3E-20 6.5E-25 168.9 16.6 165 97-284 58-233 (400)
141 PRK07050 cystathionine beta-ly 99.8 2.5E-20 5.4E-25 169.0 15.9 163 99-284 63-233 (394)
142 PRK13360 omega amino acid--pyr 99.8 2.1E-20 4.5E-25 171.8 15.4 214 65-282 45-302 (442)
143 PRK05957 aspartate aminotransf 99.8 4.2E-20 9.2E-25 167.7 17.3 200 67-284 28-253 (389)
144 PRK08574 cystathionine gamma-s 99.8 1.7E-20 3.7E-25 169.5 14.6 162 99-283 51-219 (385)
145 PLN02651 cysteine desulfurase 99.8 4.4E-20 9.6E-25 166.2 17.3 195 71-283 3-217 (364)
146 PF00202 Aminotran_3: Aminotra 99.8 1.6E-21 3.6E-26 173.4 7.9 210 65-279 15-261 (339)
147 PRK08133 O-succinylhomoserine 99.8 1.3E-20 2.8E-25 170.7 13.9 162 99-283 59-227 (390)
148 TIGR01885 Orn_aminotrans ornit 99.8 5.2E-20 1.1E-24 167.8 17.9 207 65-284 36-275 (401)
149 PRK03244 argD acetylornithine 99.8 2.6E-20 5.6E-25 169.7 15.8 219 26-283 25-270 (398)
150 PRK06058 4-aminobutyrate amino 99.8 2.7E-20 5.9E-25 171.4 15.9 212 65-283 55-306 (443)
151 PRK09082 methionine aminotrans 99.8 2.3E-20 5E-25 169.3 15.2 201 66-284 30-256 (386)
152 PRK07568 aspartate aminotransf 99.8 5.5E-20 1.2E-24 167.4 17.5 200 66-283 30-255 (397)
153 PRK07986 adenosylmethionine--8 99.8 2E-20 4.3E-25 170.9 14.5 234 27-283 26-293 (428)
154 PRK09148 aminotransferase; Val 99.8 5.7E-20 1.2E-24 167.7 17.5 204 65-284 29-258 (405)
155 PRK05630 adenosylmethionine--8 99.8 2.7E-20 5.8E-25 170.1 15.2 230 27-282 23-288 (422)
156 PRK06082 4-aminobutyrate amino 99.8 3.7E-20 8.1E-25 170.7 16.2 210 64-279 70-313 (459)
157 TIGR03392 FeS_syn_CsdA cystein 99.8 6.4E-20 1.4E-24 167.0 17.6 201 67-284 16-237 (398)
158 TIGR02006 IscS cysteine desulf 99.8 8E-20 1.7E-24 166.6 18.2 195 69-280 5-219 (402)
159 TIGR01265 tyr_nico_aTase tyros 99.8 7.7E-20 1.7E-24 166.8 18.0 196 65-278 30-255 (403)
160 PRK09221 beta alanine--pyruvat 99.8 4.1E-20 8.9E-25 169.9 16.2 235 27-283 32-306 (445)
161 cd06451 AGAT_like Alanine-glyo 99.8 2.1E-20 4.5E-25 167.7 13.9 189 77-283 8-204 (356)
162 PRK06702 O-acetylhomoserine am 99.8 7.1E-20 1.5E-24 166.6 17.5 178 79-278 37-223 (432)
163 PRK07036 hypothetical protein; 99.8 7.7E-20 1.7E-24 168.9 17.9 235 27-283 34-309 (466)
164 PLN02483 serine palmitoyltrans 99.8 4.2E-20 9E-25 171.8 16.2 201 64-284 98-328 (489)
165 PRK08249 cystathionine gamma-s 99.8 4.3E-20 9.3E-25 167.6 15.9 163 99-284 62-231 (398)
166 TIGR01979 sufS cysteine desulf 99.8 9.4E-20 2E-24 166.2 18.1 203 65-284 16-239 (403)
167 cd06454 KBL_like KBL_like; thi 99.8 2.6E-20 5.7E-25 166.4 14.2 195 67-283 2-218 (349)
168 TIGR01976 am_tr_V_VC1184 cyste 99.8 5.5E-20 1.2E-24 167.4 16.5 199 68-284 18-235 (397)
169 TIGR01326 OAH_OAS_sulfhy OAH/O 99.8 6.5E-20 1.4E-24 167.7 17.0 160 99-281 55-221 (418)
170 TIGR01977 am_tr_V_EF2568 cyste 99.8 8.6E-20 1.9E-24 164.8 17.4 186 78-281 11-216 (376)
171 PRK06939 2-amino-3-ketobutyrat 99.8 4.5E-20 9.7E-25 167.8 15.5 200 65-284 41-262 (397)
172 PRK14012 cysteine desulfurase; 99.8 1E-19 2.2E-24 166.0 17.8 195 69-280 5-221 (404)
173 cd00610 OAT_like Acetyl ornith 99.8 5.7E-20 1.2E-24 168.1 16.2 214 65-284 35-279 (413)
174 PRK08248 O-acetylhomoserine am 99.8 1.1E-19 2.4E-24 166.2 18.0 159 99-280 62-227 (431)
175 TIGR01324 cysta_beta_ly_B cyst 99.8 2.3E-20 5E-25 168.1 13.1 163 99-284 48-217 (377)
176 PTZ00377 alanine aminotransfer 99.8 6.3E-20 1.4E-24 170.9 16.5 192 82-284 92-323 (481)
177 TIGR03235 DNA_S_dndA cysteine 99.8 1.1E-19 2.3E-24 163.0 17.3 193 73-282 4-216 (353)
178 PRK06836 aspartate aminotransf 99.8 1.1E-19 2.4E-24 165.2 17.6 199 66-282 33-262 (394)
179 PRK10874 cysteine sulfinate de 99.8 1.2E-19 2.5E-24 165.5 17.6 201 67-284 19-240 (401)
180 PRK02627 acetylornithine amino 99.8 7.2E-20 1.6E-24 166.5 15.8 207 65-284 38-270 (396)
181 PRK06918 4-aminobutyrate amino 99.8 7.7E-20 1.7E-24 168.8 16.1 237 27-284 37-307 (451)
182 PRK09275 aspartate aminotransf 99.8 2.9E-20 6.4E-25 172.4 13.2 199 66-281 100-328 (527)
183 PRK03158 histidinol-phosphate 99.8 2.9E-20 6.4E-25 167.0 12.9 197 67-284 30-242 (359)
184 PRK05958 8-amino-7-oxononanoat 99.8 9.4E-20 2E-24 164.9 16.3 196 65-284 38-256 (385)
185 PTZ00125 ornithine aminotransf 99.8 9.8E-20 2.1E-24 165.9 16.3 205 65-284 30-267 (400)
186 PRK06084 O-acetylhomoserine am 99.8 1.7E-19 3.8E-24 164.7 17.8 160 99-280 56-221 (425)
187 PRK04870 histidinol-phosphate 99.8 5.1E-20 1.1E-24 165.3 14.0 197 66-284 26-237 (356)
188 PRK08175 aminotransferase; Val 99.8 9.2E-20 2E-24 165.9 15.8 204 65-284 28-257 (395)
189 PRK08861 cystathionine gamma-s 99.8 8E-20 1.7E-24 164.9 15.2 161 99-282 51-219 (388)
190 PRK02948 cysteine desulfurase; 99.8 1.4E-19 3.1E-24 163.9 16.9 196 69-281 2-215 (381)
191 PRK08114 cystathionine beta-ly 99.8 1E-19 2.3E-24 163.7 15.8 165 95-282 54-229 (395)
192 PRK05769 4-aminobutyrate amino 99.8 9.6E-20 2.1E-24 167.4 15.8 217 65-283 53-308 (441)
193 PF00155 Aminotran_1_2: Aminot 99.8 6.3E-20 1.4E-24 164.9 14.3 207 67-284 2-241 (363)
194 PRK14809 histidinol-phosphate 99.8 7.5E-20 1.6E-24 164.3 14.7 199 65-284 29-242 (357)
195 PRK05939 hypothetical protein; 99.8 1.5E-19 3.3E-24 163.8 16.7 158 99-279 45-208 (397)
196 PRK02731 histidinol-phosphate 99.8 8E-20 1.7E-24 164.6 14.9 199 65-284 31-245 (367)
197 PLN02855 Bifunctional selenocy 99.8 2.2E-19 4.7E-24 164.9 17.9 202 66-284 31-253 (424)
198 PRK08134 O-acetylhomoserine am 99.8 2.1E-19 4.5E-24 164.4 17.6 158 99-278 62-225 (433)
199 PRK09295 bifunctional cysteine 99.8 2E-19 4.4E-24 164.2 17.5 201 67-284 23-244 (406)
200 PLN03026 histidinol-phosphate 99.8 8.7E-20 1.9E-24 165.1 14.7 196 65-284 51-260 (380)
201 PRK06917 hypothetical protein; 99.8 1.9E-19 4.1E-24 165.6 17.2 233 29-283 16-288 (447)
202 PRK00950 histidinol-phosphate 99.8 8.9E-20 1.9E-24 163.9 14.6 198 65-284 33-243 (361)
203 PRK05839 hypothetical protein; 99.8 1.2E-19 2.6E-24 163.9 15.3 200 65-284 23-252 (374)
204 PRK07811 cystathionine gamma-s 99.8 9.9E-20 2.1E-24 164.9 14.7 161 99-282 59-227 (388)
205 PRK05994 O-acetylhomoserine am 99.8 3.1E-19 6.6E-24 163.4 18.0 157 99-278 61-224 (427)
206 PRK02610 histidinol-phosphate 99.8 1.7E-19 3.6E-24 163.0 15.9 201 67-284 29-254 (374)
207 PRK06209 glutamate-1-semialdeh 99.8 1.3E-19 2.7E-24 166.3 15.2 223 27-283 31-269 (431)
208 COG1104 NifS Cysteine sulfinat 99.8 1.6E-19 3.5E-24 158.6 15.1 192 69-277 3-215 (386)
209 PRK07812 O-acetylhomoserine am 99.8 4.2E-19 9.1E-24 162.3 18.4 160 99-279 67-232 (436)
210 TIGR01825 gly_Cac_T_rel pyrido 99.8 1.7E-19 3.6E-24 163.5 15.7 197 65-284 32-250 (385)
211 KOG1404|consensus 99.8 4.4E-20 9.6E-25 159.2 10.9 227 27-279 33-296 (442)
212 PRK08297 L-lysine aminotransfe 99.8 2.4E-19 5.1E-24 164.8 16.4 238 19-280 17-306 (443)
213 cd00615 Orn_deC_like Ornithine 99.8 1.1E-19 2.3E-24 159.0 13.5 168 94-281 52-236 (294)
214 PRK05387 histidinol-phosphate 99.8 1.1E-19 2.3E-24 162.9 13.8 194 66-284 24-230 (353)
215 PLN02231 alanine transaminase 99.8 2.6E-19 5.6E-24 167.7 16.7 206 67-284 130-375 (534)
216 PRK05166 histidinol-phosphate 99.8 1.1E-19 2.4E-24 164.0 13.7 198 66-283 36-251 (371)
217 PRK06855 aminotransferase; Val 99.8 5.5E-19 1.2E-23 162.5 18.3 198 65-278 31-257 (433)
218 PRK06460 hypothetical protein; 99.8 1.6E-19 3.5E-24 162.8 14.0 163 99-284 43-212 (376)
219 PLN02450 1-aminocyclopropane-1 99.8 5.1E-19 1.1E-23 163.9 17.7 204 67-281 39-289 (468)
220 PRK06148 hypothetical protein; 99.8 4.7E-19 1E-23 176.8 18.2 216 64-283 622-872 (1013)
221 PRK03321 putative aminotransfe 99.8 1.2E-19 2.6E-24 162.6 12.6 198 67-284 23-236 (352)
222 PRK05968 hypothetical protein; 99.8 2.6E-19 5.5E-24 162.3 14.7 162 99-284 61-229 (389)
223 PRK08045 cystathionine gamma-s 99.8 2.6E-19 5.6E-24 161.9 14.6 162 99-283 50-219 (386)
224 PRK13034 serine hydroxymethylt 99.8 1E-18 2.3E-23 159.6 18.7 192 69-281 32-246 (416)
225 PRK03317 histidinol-phosphate 99.8 2.5E-19 5.4E-24 161.6 14.4 196 68-284 28-248 (368)
226 TIGR03251 LAT_fam L-lysine 6-t 99.8 7.2E-19 1.6E-23 161.3 17.6 241 16-280 7-299 (431)
227 PRK14807 histidinol-phosphate 99.8 5.3E-19 1.1E-23 158.4 16.3 196 68-284 24-233 (351)
228 TIGR03402 FeS_nifS cysteine de 99.8 6.2E-19 1.3E-23 159.6 16.8 192 71-280 3-212 (379)
229 PRK06107 aspartate aminotransf 99.8 5.8E-19 1.2E-23 161.0 16.6 202 65-284 32-261 (402)
230 COG1168 MalY Bifunctional PLP- 99.8 6E-19 1.3E-23 152.5 15.6 198 68-282 27-251 (388)
231 PRK08153 histidinol-phosphate 99.8 3E-19 6.4E-24 161.1 14.4 197 68-284 34-243 (369)
232 PLN02409 serine--glyoxylate am 99.8 2.3E-19 4.9E-24 163.5 13.7 196 74-284 15-220 (401)
233 PRK07671 cystathionine beta-ly 99.8 3E-19 6.4E-24 161.1 14.3 161 99-283 48-216 (377)
234 KOG1402|consensus 99.8 2.4E-19 5.2E-24 151.5 12.7 205 65-280 58-293 (427)
235 TIGR03801 asp_4_decarbox aspar 99.8 2.4E-19 5.3E-24 166.1 13.7 199 66-281 94-327 (521)
236 TIGR02080 O_succ_thio_ly O-suc 99.8 3.7E-19 8E-24 160.7 14.6 162 99-283 49-218 (382)
237 PRK05967 cystathionine beta-ly 99.8 2.7E-19 5.8E-24 161.2 13.6 161 99-282 62-229 (395)
238 PRK00062 glutamate-1-semialdeh 99.8 3E-19 6.5E-24 163.8 14.1 214 65-284 49-284 (426)
239 TIGR02326 transamin_PhnW 2-ami 99.8 4.1E-19 8.8E-24 159.8 14.7 189 77-284 12-210 (363)
240 PRK08776 cystathionine gamma-s 99.8 3.1E-19 6.8E-24 162.2 14.1 162 99-283 58-227 (405)
241 TIGR01329 cysta_beta_ly_E cyst 99.8 4.2E-19 9E-24 160.3 14.7 158 99-280 45-209 (378)
242 cd00609 AAT_like Aspartate ami 99.8 4.5E-19 9.7E-24 157.9 14.7 190 77-284 10-225 (350)
243 PLN02376 1-aminocyclopropane-1 99.8 9.4E-19 2E-23 162.9 17.3 203 67-280 47-295 (496)
244 PRK13520 L-tyrosine decarboxyl 99.8 4.5E-19 9.8E-24 159.8 14.8 191 73-283 26-239 (371)
245 PLN02974 adenosylmethionine-8- 99.8 6.4E-19 1.4E-23 170.6 16.4 203 78-280 382-671 (817)
246 PRK06149 hypothetical protein; 99.8 7.7E-19 1.7E-23 175.1 17.4 217 64-283 583-832 (972)
247 PRK01688 histidinol-phosphate 99.8 1.6E-19 3.6E-24 161.7 11.2 190 68-284 30-233 (351)
248 PRK08056 threonine-phosphate d 99.8 5.5E-19 1.2E-23 158.6 14.4 197 65-283 19-232 (356)
249 TIGR03576 pyridox_MJ0158 pyrid 99.8 8.5E-19 1.8E-23 156.3 15.4 176 79-284 34-222 (346)
250 TIGR00707 argD acetylornithine 99.8 1.3E-18 2.8E-23 157.4 16.7 204 65-284 26-258 (379)
251 TIGR00474 selA seryl-tRNA(sec) 99.8 1.9E-18 4.1E-23 158.2 17.9 191 77-284 91-306 (454)
252 PRK08247 cystathionine gamma-s 99.8 4.9E-19 1.1E-23 159.3 13.9 161 99-283 50-218 (366)
253 PRK04311 selenocysteine syntha 99.8 1.8E-18 4E-23 158.8 17.8 191 77-284 96-311 (464)
254 PRK07505 hypothetical protein; 99.8 1.5E-18 3.3E-23 158.3 17.0 194 65-283 45-268 (402)
255 PRK05613 O-acetylhomoserine am 99.8 2.1E-18 4.5E-23 157.8 17.6 159 99-279 67-232 (437)
256 PRK04260 acetylornithine amino 99.8 1.6E-18 3.5E-23 156.7 16.6 221 27-283 12-252 (375)
257 PRK09257 aromatic amino acid a 99.8 1.1E-18 2.4E-23 158.8 15.7 197 67-277 27-259 (396)
258 cd01494 AAT_I Aspartate aminot 99.8 2.5E-18 5.5E-23 137.2 15.9 158 103-279 2-170 (170)
259 PLN02590 probable tyrosine dec 99.8 1.6E-18 3.5E-23 161.2 16.9 214 44-280 119-371 (539)
260 PRK06176 cystathionine gamma-s 99.8 1.1E-18 2.3E-23 157.6 15.2 160 99-282 48-215 (380)
261 PRK08064 cystathionine beta-ly 99.8 7.5E-19 1.6E-23 159.3 14.0 161 99-283 52-220 (390)
262 PTZ00376 aspartate aminotransf 99.8 8.8E-19 1.9E-23 159.9 14.6 202 66-282 29-272 (404)
263 PF01053 Cys_Met_Meta_PP: Cys/ 99.8 3.3E-18 7.1E-23 153.7 17.8 164 94-280 46-219 (386)
264 PRK07049 methionine gamma-lyas 99.8 9.8E-19 2.1E-23 160.0 14.6 172 99-284 81-262 (427)
265 PRK07269 cystathionine gamma-s 99.8 7.8E-19 1.7E-23 157.6 13.7 160 99-283 52-218 (364)
266 PRK07590 L,L-diaminopimelate a 99.8 1.4E-18 3.1E-23 158.8 15.4 196 66-284 34-269 (409)
267 TIGR00508 bioA adenosylmethion 99.8 2.4E-18 5.2E-23 157.6 16.8 213 65-282 44-295 (427)
268 TIGR00699 GABAtrns_euk 4-amino 99.8 1E-18 2.2E-23 160.4 14.3 220 27-269 41-325 (464)
269 cd00616 AHBA_syn 3-amino-5-hyd 99.8 1.5E-18 3.2E-23 155.4 14.9 165 96-283 13-186 (352)
270 cd00378 SHMT Serine-glycine hy 99.8 3.3E-18 7.2E-23 156.0 17.4 186 79-283 31-242 (402)
271 PRK13479 2-aminoethylphosphona 99.8 1.6E-18 3.4E-23 156.3 15.0 190 77-284 14-212 (368)
272 PRK08354 putative aminotransfe 99.8 2.5E-18 5.5E-23 151.5 15.7 182 67-278 9-196 (311)
273 PLN02607 1-aminocyclopropane-1 99.8 2.5E-18 5.5E-23 158.3 16.2 205 67-282 48-298 (447)
274 PRK06358 threonine-phosphate d 99.8 2.1E-18 4.6E-23 154.7 15.3 195 67-283 20-233 (354)
275 PRK11658 UDP-4-amino-4-deoxy-L 99.8 1.9E-18 4E-23 156.3 14.9 179 81-283 14-200 (379)
276 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 2.2E-18 4.7E-23 154.3 14.6 187 77-284 8-206 (355)
277 PRK00011 glyA serine hydroxyme 99.8 5E-18 1.1E-22 155.5 17.0 197 68-284 27-247 (416)
278 PF01041 DegT_DnrJ_EryC1: DegT 99.8 4E-18 8.7E-23 153.4 15.6 176 81-280 5-189 (363)
279 cd06450 DOPA_deC_like DOPA dec 99.8 3E-18 6.6E-23 152.9 14.3 178 82-273 14-223 (345)
280 PRK08088 4-aminobutyrate amino 99.8 4.2E-18 9.1E-23 156.3 15.3 238 27-284 24-287 (425)
281 TIGR03403 nifS_epsilon cystein 99.8 8.2E-18 1.8E-22 152.4 16.9 189 71-277 3-213 (382)
282 PRK07865 N-succinyldiaminopime 99.8 3.8E-18 8.2E-23 153.6 14.5 192 65-284 26-243 (364)
283 PF00266 Aminotran_5: Aminotra 99.8 3.9E-18 8.5E-23 153.9 14.3 196 70-283 2-218 (371)
284 PRK03967 histidinol-phosphate 99.8 6.1E-18 1.3E-22 150.7 15.3 193 66-284 18-224 (337)
285 PLN02880 tyrosine decarboxylas 99.8 3.7E-18 7.9E-23 158.4 14.1 207 45-274 72-315 (490)
286 PLN02509 cystathionine beta-ly 99.8 5.4E-18 1.2E-22 155.7 14.6 158 99-280 131-295 (464)
287 TIGR03588 PseC UDP-4-keto-6-de 99.8 1.2E-17 2.6E-22 151.2 16.8 182 81-282 10-202 (380)
288 COG1167 ARO8 Transcriptional r 99.8 8.3E-18 1.8E-22 155.3 15.9 201 66-284 89-318 (459)
289 TIGR02379 ECA_wecE TDP-4-keto- 99.8 1.3E-17 2.8E-22 150.4 16.6 182 80-284 10-201 (376)
290 TIGR03539 DapC_actino succinyl 99.8 4.9E-18 1.1E-22 152.5 13.6 192 65-284 20-237 (357)
291 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.8 1.2E-17 2.5E-22 151.0 16.1 178 83-283 13-199 (375)
292 TIGR03812 tyr_de_CO2_Arch tyro 99.8 8.3E-18 1.8E-22 151.7 14.9 185 79-284 32-245 (373)
293 PF00282 Pyridoxal_deC: Pyrido 99.8 1E-17 2.3E-22 150.5 15.3 212 45-282 29-280 (373)
294 PRK05937 8-amino-7-oxononanoat 99.8 1.2E-17 2.7E-22 150.6 15.3 194 67-281 5-226 (370)
295 COG0399 WecE Predicted pyridox 99.8 1.4E-17 3E-22 147.4 15.1 180 80-283 14-202 (374)
296 PRK05664 threonine-phosphate d 99.8 1.1E-17 2.3E-22 148.8 14.5 181 67-284 21-212 (330)
297 COG2873 MET17 O-acetylhomoseri 99.8 1.4E-17 3E-22 143.3 14.3 177 79-278 38-223 (426)
298 PLN02672 methionine S-methyltr 99.8 1.3E-17 2.8E-22 164.1 15.9 207 61-284 692-931 (1082)
299 TIGR03542 DAPAT_plant LL-diami 99.8 1.1E-17 2.3E-22 152.7 14.4 195 65-283 32-265 (402)
300 PRK02769 histidine decarboxyla 99.8 1.1E-17 2.5E-22 150.5 13.8 164 102-282 66-248 (380)
301 PLN03032 serine decarboxylase; 99.8 1.4E-17 3E-22 149.1 14.1 166 101-283 66-252 (374)
302 PRK04635 histidinol-phosphate 99.8 3.8E-18 8.3E-23 153.0 10.5 189 67-284 32-234 (354)
303 COG0626 MetC Cystathionine bet 99.8 2.3E-17 5E-22 146.9 15.1 162 99-282 61-229 (396)
304 PRK09440 avtA valine--pyruvate 99.7 3.3E-17 7.2E-22 150.1 16.1 205 67-284 31-268 (416)
305 PLN02397 aspartate transaminas 99.7 2.4E-17 5.2E-22 151.1 14.9 195 67-276 49-281 (423)
306 PRK14808 histidinol-phosphate 99.7 3E-17 6.6E-22 146.1 14.7 188 65-284 18-222 (335)
307 TIGR03799 NOD_PanD_pyr putativ 99.7 4E-17 8.8E-22 152.0 16.0 177 95-282 119-351 (522)
308 PRK07908 hypothetical protein; 99.7 3.3E-17 7.1E-22 146.7 14.6 191 65-284 21-224 (349)
309 PRK07582 cystathionine gamma-l 99.7 1.7E-17 3.7E-22 149.3 12.7 158 99-283 49-214 (366)
310 PRK07392 threonine-phosphate d 99.7 4.8E-17 1E-21 146.3 14.9 193 67-284 23-236 (360)
311 PLN02414 glycine dehydrogenase 99.7 4.1E-17 8.9E-22 160.1 15.5 166 101-283 568-752 (993)
312 PRK04366 glycine dehydrogenase 99.7 6.8E-17 1.5E-21 150.2 16.2 185 79-283 82-294 (481)
313 TIGR01788 Glu-decarb-GAD gluta 99.7 4.3E-17 9.4E-22 148.8 14.5 184 77-280 51-277 (431)
314 PRK04781 histidinol-phosphate 99.7 2.7E-17 5.8E-22 148.1 13.0 170 95-284 54-240 (364)
315 PLN03226 serine hydroxymethylt 99.7 1.3E-16 2.8E-21 147.5 17.7 191 71-283 40-263 (475)
316 PRK06425 histidinol-phosphate 99.7 2.4E-17 5.2E-22 146.6 12.1 165 95-284 35-213 (332)
317 TIGR01140 L_thr_O3P_dcar L-thr 99.7 2.9E-17 6.3E-22 146.0 11.9 186 66-284 17-214 (330)
318 KOG0053|consensus 99.7 4.9E-17 1.1E-21 143.3 12.3 163 99-283 75-244 (409)
319 PRK08637 hypothetical protein; 99.7 1.4E-16 3E-21 144.7 15.2 186 79-277 21-240 (388)
320 PRK13580 serine hydroxymethylt 99.7 2.4E-16 5.3E-21 143.9 16.6 193 70-284 54-304 (493)
321 TIGR01814 kynureninase kynuren 99.7 1.2E-16 2.6E-21 146.0 14.3 194 66-276 26-243 (406)
322 PLN02271 serine hydroxymethylt 99.7 7.9E-16 1.7E-20 141.3 17.8 189 72-281 155-376 (586)
323 PTZ00094 serine hydroxymethylt 99.7 9.1E-16 2E-20 141.9 17.9 196 72-282 41-261 (452)
324 COG0075 Serine-pyruvate aminot 99.7 3.2E-16 6.9E-21 138.7 14.0 188 77-281 14-209 (383)
325 PRK00451 glycine dehydrogenase 99.7 2E-16 4.3E-21 146.3 13.2 163 103-284 114-288 (447)
326 KOG1360|consensus 99.7 6.6E-17 1.4E-21 139.9 8.9 192 71-284 177-390 (570)
327 PRK15407 lipopolysaccharide bi 99.7 3.3E-16 7.2E-21 143.7 14.1 158 100-280 62-235 (438)
328 KOG1359|consensus 99.7 5.3E-17 1.1E-21 135.5 7.7 192 66-283 67-280 (417)
329 TIGR03531 selenium_SpcS O-phos 99.7 4.3E-16 9.4E-21 141.9 14.4 166 101-283 105-292 (444)
330 PRK06959 putative threonine-ph 99.7 2.9E-16 6.2E-21 140.1 13.0 181 67-284 25-218 (339)
331 COG0112 GlyA Glycine/serine hy 99.7 5.4E-16 1.2E-20 134.8 14.1 192 70-283 31-247 (413)
332 PLN02263 serine decarboxylase 99.7 6.5E-16 1.4E-20 140.7 14.5 160 103-279 131-316 (470)
333 PF01276 OKR_DC_1: Orn/Lys/Arg 99.7 1.9E-16 4.1E-21 142.1 9.7 169 95-280 60-255 (417)
334 PRK06434 cystathionine gamma-l 99.7 1.4E-15 3.1E-20 136.9 15.3 158 99-282 62-227 (384)
335 TIGR00461 gcvP glycine dehydro 99.7 1.6E-15 3.4E-20 147.5 16.5 165 101-283 530-714 (939)
336 KOG0628|consensus 99.7 5.3E-16 1.2E-20 136.6 11.9 234 10-270 18-307 (511)
337 PF06838 Met_gamma_lyase: Meth 99.7 3.8E-15 8.3E-20 128.6 16.7 196 80-284 26-243 (403)
338 COG0076 GadB Glutamate decarbo 99.7 1.8E-15 3.8E-20 138.7 14.6 185 77-281 72-293 (460)
339 COG1103 Archaea-specific pyrid 99.7 2.6E-15 5.6E-20 124.2 13.5 190 79-283 29-236 (382)
340 PF00464 SHMT: Serine hydroxym 99.6 5.7E-15 1.2E-19 132.1 14.5 190 73-279 28-245 (399)
341 PRK05367 glycine dehydrogenase 99.6 5.4E-15 1.2E-19 145.8 15.2 165 101-282 542-725 (954)
342 PRK12566 glycine dehydrogenase 99.6 7.3E-15 1.6E-19 142.2 14.6 154 101-271 543-709 (954)
343 KOG0256|consensus 99.6 1.9E-14 4E-19 125.3 15.5 174 97-281 117-320 (471)
344 TIGR03811 tyr_de_CO2_Ent tyros 99.6 1.4E-14 3.1E-19 136.3 15.6 191 80-282 96-401 (608)
345 KOG1403|consensus 99.6 2.1E-15 4.6E-20 126.4 7.2 231 26-279 29-294 (452)
346 PRK15029 arginine decarboxylas 99.6 2E-14 4.3E-19 137.9 13.9 168 95-277 199-398 (755)
347 COG1003 GcvP Glycine cleavage 99.5 6.7E-14 1.4E-18 122.9 11.9 153 101-273 109-274 (496)
348 PLN02724 Molybdenum cofactor s 99.5 9.9E-14 2.1E-18 136.4 14.2 173 101-283 78-280 (805)
349 KOG1357|consensus 99.5 4.6E-14 9.9E-19 124.2 9.8 198 67-284 137-364 (519)
350 PF03841 SelA: L-seryl-tRNA se 99.5 7.9E-15 1.7E-19 127.9 2.8 181 80-284 19-231 (367)
351 PRK03080 phosphoserine aminotr 99.5 1.7E-13 3.7E-18 124.0 11.1 182 77-284 21-213 (378)
352 PRK13578 ornithine decarboxyla 99.5 6.7E-13 1.5E-17 126.4 13.2 167 96-278 169-368 (720)
353 KOG2862|consensus 99.4 6.7E-13 1.5E-17 112.0 10.4 186 77-279 26-219 (385)
354 KOG0634|consensus 99.4 2.4E-12 5.1E-17 113.1 13.1 177 96-284 95-314 (472)
355 COG3977 Alanine-alpha-ketoisov 99.4 4.6E-12 1E-16 106.5 14.2 203 68-284 32-268 (417)
356 COG1921 SelA Selenocysteine sy 99.4 1.9E-12 4.2E-17 114.0 12.2 183 79-284 39-241 (395)
357 COG3033 TnaA Tryptophanase [Am 99.4 9.7E-12 2.1E-16 107.0 13.6 202 66-281 46-283 (471)
358 KOG0633|consensus 99.4 4.9E-12 1.1E-16 104.4 10.9 162 103-282 71-245 (375)
359 PRK15400 lysine decarboxylase 99.4 9.4E-12 2E-16 118.5 13.7 161 96-275 190-377 (714)
360 PRK15399 lysine decarboxylase 99.4 1.5E-11 3.2E-16 117.2 14.9 161 96-276 190-378 (713)
361 COG4100 Cystathionine beta-lya 99.3 3.4E-11 7.3E-16 101.4 13.1 196 80-284 37-254 (416)
362 KOG1358|consensus 99.3 9.5E-12 2.1E-16 108.0 9.7 200 64-283 92-320 (467)
363 PRK05355 3-phosphoserine/phosp 99.3 1.2E-11 2.5E-16 111.2 10.1 182 76-284 11-214 (360)
364 TIGR01366 serC_3 phosphoserine 99.3 1.1E-11 2.3E-16 111.5 9.7 180 77-283 12-203 (361)
365 cd00611 PSAT_like Phosphoserin 99.3 8.1E-12 1.8E-16 112.1 8.6 182 77-284 8-211 (355)
366 KOG0258|consensus 99.3 3.2E-11 6.8E-16 104.8 11.6 171 94-276 106-309 (475)
367 KOG0629|consensus 99.3 2.3E-11 5E-16 106.7 10.2 156 105-271 145-326 (510)
368 KOG2467|consensus 99.3 8.7E-11 1.9E-15 101.3 12.5 192 70-280 45-266 (477)
369 COG1982 LdcC Arginine/lysine/o 99.3 6.6E-11 1.4E-15 108.8 12.3 159 100-277 69-244 (557)
370 PRK05367 glycine dehydrogenase 99.2 5.1E-10 1.1E-14 111.0 14.5 156 102-284 122-290 (954)
371 TIGR01364 serC_1 phosphoserine 99.1 3E-10 6.5E-15 101.6 9.1 157 101-284 37-203 (349)
372 PF02347 GDC-P: Glycine cleava 99.1 4.4E-09 9.5E-14 95.0 15.6 156 102-284 111-281 (429)
373 PLN02414 glycine dehydrogenase 99.1 2.1E-09 4.5E-14 106.5 13.8 179 79-284 117-318 (993)
374 TIGR01365 serC_2 phosphoserine 99.0 1.2E-09 2.6E-14 98.2 9.0 178 79-283 14-203 (374)
375 COG0403 GcvP Glycine cleavage 99.0 1.9E-08 4.1E-13 89.0 13.7 192 73-285 82-296 (450)
376 KOG2040|consensus 98.9 4.6E-09 9.9E-14 96.7 9.7 156 100-272 581-749 (1001)
377 COG3844 Kynureninase [Amino ac 98.9 1.8E-08 3.8E-13 86.2 11.9 148 103-270 78-232 (407)
378 TIGR00461 gcvP glycine dehydro 98.7 1.1E-07 2.4E-12 93.5 12.3 156 102-284 110-278 (939)
379 COG1448 TyrB Aspartate/tyrosin 98.7 6.9E-07 1.5E-11 78.3 13.7 169 94-277 62-260 (396)
380 PLN02452 phosphoserine transam 98.7 1.7E-07 3.7E-12 84.2 10.1 182 76-284 15-218 (365)
381 PF12897 Aminotran_MocR: Alani 98.6 2.2E-07 4.8E-12 81.6 8.2 172 94-281 61-270 (425)
382 PRK12566 glycine dehydrogenase 98.5 1.3E-06 2.8E-11 85.7 12.2 183 73-284 86-292 (954)
383 KOG1383|consensus 98.4 1.1E-06 2.5E-11 78.5 9.0 162 103-284 122-309 (491)
384 PRK12462 phosphoserine aminotr 98.4 2.9E-06 6.3E-11 75.8 11.0 181 77-284 13-216 (364)
385 KOG1405|consensus 98.4 6.6E-07 1.4E-11 77.4 5.8 84 185-269 253-345 (484)
386 PF05889 SLA_LP_auto_ag: Solub 98.2 3.5E-06 7.5E-11 74.8 6.3 157 106-278 61-235 (389)
387 KOG1411|consensus 97.8 0.0007 1.5E-08 58.9 13.1 181 80-275 72-285 (427)
388 KOG1412|consensus 97.3 0.0034 7.3E-08 54.1 10.4 135 120-270 103-257 (410)
389 KOG3846|consensus 97.0 0.005 1.1E-07 53.0 8.9 205 57-280 57-293 (465)
390 KOG3843|consensus 96.9 0.00065 1.4E-08 57.1 2.7 88 184-278 140-237 (432)
391 KOG2040|consensus 96.4 0.027 5.8E-07 53.3 9.8 153 105-283 167-330 (1001)
392 PF04864 Alliinase_C: Allinase 96.2 0.0041 8.9E-08 54.5 2.9 150 101-282 43-213 (363)
393 PLN02994 1-aminocyclopropane-1 95.9 0.02 4.3E-07 45.0 5.5 54 97-151 88-151 (153)
394 COG1932 SerC Phosphoserine ami 93.9 0.87 1.9E-05 40.5 10.6 158 101-284 50-218 (365)
395 smart00642 Aamy Alpha-amylase 81.5 4.2 9E-05 32.3 5.5 59 186-247 17-92 (166)
396 COG2870 RfaE ADP-heptose synth 79.9 22 0.00048 32.4 9.8 125 103-246 53-179 (467)
397 COG2102 Predicted ATPases of P 76.8 25 0.00054 29.3 8.7 131 119-267 4-146 (223)
398 COG0352 ThiE Thiamine monophos 75.6 11 0.00024 31.2 6.4 50 187-246 24-73 (211)
399 cd00408 DHDPS-like Dihydrodipi 70.4 13 0.00029 32.0 6.1 63 177-244 7-72 (281)
400 cd00951 KDGDH 5-dehydro-4-deox 70.4 12 0.00026 32.6 5.8 61 178-243 11-74 (289)
401 PRK03620 5-dehydro-4-deoxygluc 70.4 12 0.00026 32.9 5.8 61 178-243 18-81 (303)
402 COG0329 DapA Dihydrodipicolina 68.6 12 0.00027 32.7 5.5 60 179-243 16-78 (299)
403 PF02603 Hpr_kinase_N: HPr Ser 67.7 7.3 0.00016 29.4 3.4 33 204-246 81-113 (127)
404 PF04131 NanE: Putative N-acet 66.7 25 0.00054 28.6 6.4 69 185-266 52-122 (192)
405 TIGR03249 KdgD 5-dehydro-4-deo 66.0 17 0.00036 31.8 5.8 61 178-243 16-79 (296)
406 TIGR00097 HMP-P_kinase phospho 66.0 13 0.00028 31.5 5.1 35 204-246 67-102 (254)
407 PRK03170 dihydrodipicolinate s 66.0 19 0.0004 31.3 6.1 61 178-243 12-75 (292)
408 COG0552 FtsY Signal recognitio 65.6 6.5 0.00014 34.8 3.1 125 138-278 164-305 (340)
409 PRK04147 N-acetylneuraminate l 65.0 18 0.00039 31.5 5.9 62 178-243 14-78 (293)
410 cd00950 DHDPS Dihydrodipicolin 65.0 19 0.00041 31.1 6.0 61 178-243 11-74 (284)
411 TIGR00683 nanA N-acetylneurami 64.7 19 0.00041 31.4 5.9 62 178-244 11-76 (290)
412 KOG0630|consensus 64.5 12 0.00025 35.0 4.6 85 183-273 272-368 (838)
413 PRK10785 maltodextrin glucosid 64.2 13 0.00028 36.1 5.2 58 186-246 177-247 (598)
414 COG1105 FruK Fructose-1-phosph 64.1 22 0.00047 31.3 6.0 58 184-246 110-167 (310)
415 PRK13602 putative ribosomal pr 63.9 32 0.0007 23.7 5.8 46 187-246 16-61 (82)
416 TIGR02313 HpaI-NOT-DapA 2,4-di 63.6 20 0.00043 31.3 5.8 61 178-243 11-74 (294)
417 PLN02417 dihydrodipicolinate s 62.9 19 0.00041 31.2 5.6 64 178-246 12-78 (280)
418 PF13481 AAA_25: AAA domain; P 62.6 14 0.0003 29.6 4.4 53 186-243 128-184 (193)
419 PF00128 Alpha-amylase: Alpha 61.8 9.4 0.0002 32.8 3.5 23 224-246 51-73 (316)
420 TIGR00674 dapA dihydrodipicoli 61.0 26 0.00056 30.3 6.1 62 178-244 9-73 (285)
421 COG0296 GlgB 1,4-alpha-glucan 60.7 10 0.00022 36.8 3.6 27 222-248 211-237 (628)
422 COG3010 NanE Putative N-acetyl 60.5 31 0.00067 28.5 5.8 69 185-265 86-156 (229)
423 COG0108 RibB 3,4-dihydroxy-2-b 59.6 16 0.00034 29.9 4.0 35 204-243 156-190 (203)
424 KOG2790|consensus 58.9 60 0.0013 28.3 7.6 192 66-284 6-223 (370)
425 PRK12412 pyridoxal kinase; Rev 57.7 22 0.00049 30.4 5.1 35 204-246 72-107 (268)
426 TIGR01305 GMP_reduct_1 guanosi 57.4 53 0.0011 29.3 7.3 72 184-263 158-241 (343)
427 cd00952 CHBPH_aldolase Trans-o 56.4 26 0.00057 30.8 5.4 60 182-246 23-85 (309)
428 PF00701 DHDPS: Dihydrodipicol 56.3 24 0.00053 30.5 5.1 62 178-244 12-76 (289)
429 PF13407 Peripla_BP_4: Peripla 56.0 23 0.00049 29.6 4.8 58 170-243 27-85 (257)
430 KOG1465|consensus 55.9 1.4E+02 0.0031 26.2 9.9 107 116-246 162-272 (353)
431 PRK13601 putative L7Ae-like ri 55.6 58 0.0013 22.5 5.9 46 188-247 14-59 (82)
432 PRK09441 cytoplasmic alpha-amy 55.0 14 0.00029 34.8 3.5 24 223-246 79-102 (479)
433 PRK06683 hypothetical protein; 54.9 54 0.0012 22.6 5.7 45 188-246 17-61 (82)
434 TIGR01768 GGGP-family geranylg 54.6 64 0.0014 27.0 7.0 61 185-260 15-75 (223)
435 cd01299 Met_dep_hydrolase_A Me 54.3 30 0.00064 30.6 5.5 60 186-245 118-180 (342)
436 PRK13396 3-deoxy-7-phosphohept 53.5 44 0.00095 30.1 6.2 79 185-269 219-316 (352)
437 PF07085 DRTGG: DRTGG domain; 52.3 38 0.00083 24.2 4.9 42 186-244 50-91 (105)
438 cd00984 DnaB_C DnaB helicase C 51.8 35 0.00075 28.4 5.3 57 185-243 106-168 (242)
439 TIGR00789 flhB_rel flhB C-term 51.4 15 0.00033 25.4 2.4 20 227-246 29-48 (82)
440 PF03460 NIR_SIR_ferr: Nitrite 51.3 40 0.00086 22.0 4.5 28 207-239 11-38 (69)
441 PF08543 Phos_pyr_kin: Phospho 49.9 41 0.00088 28.4 5.4 36 204-247 60-95 (246)
442 cd00954 NAL N-Acetylneuraminic 49.0 50 0.0011 28.6 5.9 61 178-243 11-75 (288)
443 PRK01018 50S ribosomal protein 48.3 67 0.0014 23.0 5.5 43 188-244 22-64 (99)
444 PLN00196 alpha-amylase; Provis 48.1 21 0.00045 33.1 3.5 24 223-246 90-113 (428)
445 COG1435 Tdk Thymidine kinase [ 47.7 1.6E+02 0.0034 24.2 8.4 38 205-248 83-120 (201)
446 TIGR03849 arch_ComA phosphosul 47.5 57 0.0012 27.6 5.7 54 185-246 9-62 (237)
447 PLN02672 methionine S-methyltr 47.1 2.1E+02 0.0045 30.1 10.6 143 83-246 406-565 (1082)
448 COG1184 GCD2 Translation initi 46.1 1.6E+02 0.0035 25.9 8.3 108 113-244 116-227 (301)
449 PF03796 DnaB_C: DnaB-like hel 45.5 54 0.0012 27.8 5.5 59 184-243 111-175 (259)
450 PF07505 Gp37_Gp68: Phage prot 45.4 36 0.00078 29.2 4.3 42 204-246 188-229 (261)
451 PRK06427 bifunctional hydroxy- 45.1 49 0.0011 28.1 5.2 35 204-246 73-108 (266)
452 COG1504 Uncharacterized conser 45.1 67 0.0014 23.6 4.9 48 184-244 48-95 (121)
453 PF01408 GFO_IDH_MocA: Oxidore 45.0 96 0.0021 22.3 6.2 57 171-243 62-118 (120)
454 cd01169 HMPP_kinase 4-amino-5- 44.5 49 0.0011 27.5 5.1 35 204-246 68-103 (242)
455 PRK00366 ispG 4-hydroxy-3-meth 43.9 41 0.00088 30.2 4.5 26 219-244 110-136 (360)
456 PRK04169 geranylgeranylglycery 43.6 73 0.0016 26.8 5.8 50 181-243 16-65 (232)
457 TIGR00612 ispG_gcpE 1-hydroxy- 43.2 37 0.00081 30.2 4.1 26 219-244 102-127 (346)
458 TIGR00506 ribB 3,4-dihydroxy-2 42.5 50 0.0011 27.1 4.5 35 204-243 157-191 (199)
459 PRK05096 guanosine 5'-monophos 42.3 1.6E+02 0.0035 26.4 7.9 73 184-261 159-240 (346)
460 PLN02361 alpha-amylase 42.1 29 0.00063 31.9 3.4 24 223-246 74-97 (401)
461 PLN03244 alpha-amylase; Provis 41.1 34 0.00074 34.2 3.9 26 223-248 439-464 (872)
462 TIGR02402 trehalose_TreZ malto 40.9 29 0.00063 33.2 3.4 26 223-248 158-183 (542)
463 PF12138 Spherulin4: Spherulat 40.4 74 0.0016 27.2 5.5 51 186-242 17-71 (253)
464 PRK12313 glycogen branching en 40.4 30 0.00064 33.8 3.5 26 223-248 218-243 (633)
465 PRK01792 ribB 3,4-dihydroxy-2- 40.4 55 0.0012 27.2 4.5 35 204-243 167-201 (214)
466 cd00953 KDG_aldolase KDG (2-ke 40.2 76 0.0016 27.4 5.6 54 178-237 11-64 (279)
467 PTZ00106 60S ribosomal protein 39.9 1.1E+02 0.0023 22.4 5.6 43 188-244 31-73 (108)
468 COG1066 Sms Predicted ATP-depe 39.5 87 0.0019 28.9 5.9 55 185-245 155-217 (456)
469 PRK00910 ribB 3,4-dihydroxy-2- 39.4 58 0.0013 27.1 4.5 35 204-243 168-202 (218)
470 PRK11096 ansB L-asparaginase I 39.4 1.2E+02 0.0027 27.2 7.0 47 185-243 244-290 (347)
471 COG0826 Collagenase and relate 39.3 82 0.0018 28.3 5.8 46 186-239 15-63 (347)
472 PRK12616 pyridoxal kinase; Rev 39.2 67 0.0015 27.5 5.2 36 204-247 74-110 (270)
473 PF02581 TMP-TENI: Thiamine mo 39.1 45 0.00098 26.6 3.9 50 186-245 14-63 (180)
474 PF07905 PucR: Purine cataboli 38.5 97 0.0021 23.0 5.3 48 186-243 57-104 (123)
475 cd00411 Asparaginase Asparagin 37.9 1E+02 0.0023 27.3 6.3 47 185-243 221-267 (323)
476 PRK08573 phosphomethylpyrimidi 37.9 65 0.0014 30.0 5.2 28 219-246 78-105 (448)
477 PF00926 DHBP_synthase: 3,4-di 37.8 49 0.0011 27.1 3.8 35 204-243 152-186 (194)
478 PRK09505 malS alpha-amylase; R 37.6 36 0.00078 33.6 3.5 24 223-246 290-313 (683)
479 PRK05402 glycogen branching en 37.5 36 0.00078 33.9 3.6 27 222-248 312-338 (726)
480 TIGR01515 branching_enzym alph 37.1 36 0.00079 33.1 3.5 26 223-248 204-229 (613)
481 TIGR03586 PseI pseudaminic aci 37.1 91 0.002 27.8 5.7 80 186-271 145-232 (327)
482 PRK06512 thiamine-phosphate py 36.2 51 0.0011 27.5 3.8 50 186-245 28-78 (221)
483 TIGR00334 5S_RNA_mat_M5 ribonu 35.9 35 0.00077 27.3 2.6 49 184-248 11-59 (174)
484 TIGR02104 pulA_typeI pullulana 35.8 36 0.00079 33.0 3.2 25 224-248 228-252 (605)
485 PF00728 Glyco_hydro_20: Glyco 35.7 28 0.0006 31.0 2.3 24 221-244 69-92 (351)
486 PF04914 DltD_C: DltD C-termin 35.1 41 0.00088 25.6 2.7 51 186-246 37-96 (130)
487 TIGR02403 trehalose_treC alpha 35.1 42 0.00091 32.1 3.5 59 185-246 24-96 (543)
488 PRK05583 ribosomal protein L7A 35.0 1.4E+02 0.003 21.6 5.4 45 187-245 22-66 (104)
489 COG1879 RbsB ABC-type sugar tr 35.0 78 0.0017 27.6 5.0 47 186-248 80-126 (322)
490 PRK00014 ribB 3,4-dihydroxy-2- 34.8 76 0.0016 26.7 4.5 35 204-243 172-206 (230)
491 cd02742 GH20_hexosaminidase Be 34.8 40 0.00086 29.6 3.1 26 219-244 66-91 (303)
492 PF10678 DUF2492: Protein of u 34.7 58 0.0013 22.3 3.1 42 103-144 22-63 (78)
493 PRK07714 hypothetical protein; 34.4 1.4E+02 0.003 21.3 5.4 45 187-245 23-67 (100)
494 TIGR03853 matur_matur probable 34.3 64 0.0014 22.0 3.3 41 103-143 20-60 (77)
495 TIGR02100 glgX_debranch glycog 34.1 45 0.00097 33.0 3.5 26 223-248 243-268 (688)
496 PRK09461 ansA cytoplasmic aspa 34.0 1E+02 0.0022 27.5 5.6 48 185-243 221-269 (335)
497 PRK10933 trehalose-6-phosphate 33.8 46 0.00099 32.0 3.5 58 186-246 31-102 (551)
498 cd01121 Sms Sms (bacterial rad 33.8 89 0.0019 28.4 5.2 53 185-243 145-205 (372)
499 PLN02447 1,4-alpha-glucan-bran 33.6 44 0.00096 33.3 3.4 26 223-248 298-323 (758)
500 cd01840 SGNH_hydrolase_yrhL_li 33.6 1E+02 0.0022 23.5 4.9 37 204-244 79-115 (150)
No 1
>KOG1368|consensus
Probab=100.00 E-value=2e-36 Score=250.98 Aligned_cols=215 Identities=54% Similarity=0.941 Sum_probs=202.7
Q ss_pred CCeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 65 NIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
-....||+++..+.|..+|+++|.++..++..|+.+|...+||+..|+++|+|.++|+.||+.+|+++++..+.++|.++
T Consensus 20 ~~~~vDLRSDTvT~PTdeMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc~~rg~ei 99 (384)
T KOG1368|consen 20 THRSVDLRSDTVTVPTDEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHCHQRGSEI 99 (384)
T ss_pred eeeccccccccccCChHHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHhcCCCceE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccc-cccCCceEEEEEecccCCCCeeeCC
Q psy5413 145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD-NIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
|+.+..|++.++.++++ ...|+.+.++...+++.+|++++|++|.... +.|.+.|++|.+|++++.+||.++|
T Consensus 100 i~gd~~HI~~~E~gg~s------~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlP 173 (384)
T KOG1368|consen 100 IVGDRAHIHRYEQGGIS------QLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLP 173 (384)
T ss_pred EeccchheeehhccChh------hhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEee
Confidence 99999999999999998 7789999999998999999999999998544 7788999999999999999899999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCcccccC
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~~ 285 (285)
.|++.++.++|++||+.|++|+++. +...+++.+|.+..|+||+||+|.|.+++++++||++
T Consensus 174 le~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~k 244 (384)
T KOG1368|consen 174 LEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDK 244 (384)
T ss_pred HHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHH
Confidence 9999999999999999999999977 6667788999999999999999999999999999874
No 2
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.98 E-value=4.1e-32 Score=234.88 Aligned_cols=204 Identities=43% Similarity=0.668 Sum_probs=178.9
Q ss_pred eeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
||.|++ ++|+|++++.+...++..|+.++...+|++.+++++|.+.++|+.+|+.||.+++++++ ++++.|++.+.
T Consensus 1 Df~SD~---~~~~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~-~~~~~vi~~~~ 76 (290)
T PF01212_consen 1 DFRSDT---PTPAMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHL-RPGESVICADT 76 (290)
T ss_dssp EES-SS---S-HHEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHH-HTTEEEEEETT
T ss_pred CCCccC---CCHHHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHH-hcCCceecccc
Confidence 788988 89999999988877877999999999999999999999999999999999999999998 69999999999
Q ss_pred cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~ 229 (285)
+|...++.+++. ...|.+++.++..+++.+|+++|++.++.... |..++++|+++++++..||.+++.++|++
T Consensus 77 aHi~~~E~ga~~------~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~-h~~~~~~v~le~t~~~~GG~~~s~~el~a 149 (290)
T PF01212_consen 77 AHIHFDETGAIE------ELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGA-HHPQPAVVSLENTTELAGGTVYSLEELRA 149 (290)
T ss_dssp EHHHHSSTTHHH------HHTTCEEEEEBECTGTBB-HHHHHHHHHHHTG-TSGGEEEEEEESSBTTTTSB---HHHHHH
T ss_pred ceeeeeccchhh------HhcCcEEEECCCcccCCCCHHHHHHHhhhccc-cCCCccEEEEEecCcCCCCeeCCHHHHHH
Confidence 999999988886 56799999999855499999999999988555 67799999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 230 LKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 230 i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|.++||+||+.|++|++|. .+.++..++|++++|++|.+++|.|+++++++++|+
T Consensus 150 i~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~ 213 (290)
T PF01212_consen 150 ISELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIA 213 (290)
T ss_dssp HHHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHH
T ss_pred HHHHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHH
Confidence 9999999999999999986 556677899999999999999999999999998764
No 3
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.98 E-value=2.8e-31 Score=227.73 Aligned_cols=208 Identities=43% Similarity=0.705 Sum_probs=180.2
Q ss_pred eeeeccCCcCCCcHHHHHHHHhcc-cCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413 68 TVDIRSDTISKPTMEMKNYMFNCE-VGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV 146 (285)
Q Consensus 68 ~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~ 146 (285)
+++|+|+++.+++|+|+++|.+.. .++..|+.++...++++++++++|.+.++|+.|||+||..++.+.+ ++++.||+
T Consensus 1 ~~~f~SDn~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~~-~~~~~vi~ 79 (342)
T COG2008 1 MIDFRSDNVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAHC-QPGESVIC 79 (342)
T ss_pred CCccccCccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHhc-CCCCeEEE
Confidence 368999999999999999999887 5688999999999999999999999889999999999999999998 69999999
Q ss_pred cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
...+|.+.++.+++. ...+...+.+...+++.+++++|+..|.. ++.|...+.++++++..+.. |+++|.++
T Consensus 80 ~~~aHi~~~E~Ga~~------~~~~~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~te~-GtVy~l~e 151 (342)
T COG2008 80 HETAHIYTDECGAPE------FFGGGQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTATEG-GTVYPLDE 151 (342)
T ss_pred eccccceecccCcHH------HHcCCceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccCCC-ceecCHHH
Confidence 999999999999987 33334444444447889999999999987 45444566666666655544 99999999
Q ss_pred HHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|++|.++||+||++|++|++|. .......++|++++|++|+++.|.|+++++++++++
T Consensus 152 l~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~ 218 (342)
T COG2008 152 LEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAK 218 (342)
T ss_pred HHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHH
Confidence 9999999999999999999977 344566899999999999999999999999999875
No 4
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.96 E-value=5.8e-28 Score=211.25 Aligned_cols=217 Identities=19% Similarity=0.270 Sum_probs=170.1
Q ss_pred ccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCCccC
Q psy5413 28 ALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDVYLE 99 (285)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~y~~ 99 (285)
..+.+..+.+.|+.. |++|+||.+ .+.+|+||.+.+++.+|... .+.|.
T Consensus 26 ~~~~~G~G~~v~D~~----------------------G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~- 82 (404)
T COG4992 26 VVIVRGEGAYVWDQQ----------------------GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFY- 82 (404)
T ss_pred eeEEeccccEEECCC----------------------CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccC-
Confidence 555667888888755 555666543 34578999999999988763 34555
Q ss_pred ChhHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccccCC---C-eEE-ecCCcceeeeccccccc--ccccccccc
Q psy5413 100 DPTCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRD---S-EII-VGDCSHIMLWEQGGASQ--TSVYSQIGR 171 (285)
Q Consensus 100 ~~~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g---~-~vi-~~~~~h~~~~~~~~~~~--~~~~~~~~g 171 (285)
++...+|.+.|++..+ .+.++|+|||+|||++|+|++....+ + +|| +.+.+|+-+.. ++++ ++.|++.++
T Consensus 83 ~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~g--alS~t~~~ky~~~F~ 160 (404)
T COG4992 83 NEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLG--ALSATGQPKYRKGFG 160 (404)
T ss_pred ChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccce--eeeccCChhhccCCC
Confidence 5669999999999996 88999999999999999999874333 2 344 36777877643 4444 567776666
Q ss_pred eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---
Q psy5413 172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--- 248 (285)
Q Consensus 172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--- 248 (285)
+.+-.+..-+.+ |+++++++|++ +|++|++|+.|+.+|-.+.++++|++++++|++||+++|+||+|+
T Consensus 161 Pl~~g~~~vpfn--Di~al~~ai~~-------~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~G 231 (404)
T COG4992 161 PLLPGFRHVPFN--DIEALEAAIDE-------DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLG 231 (404)
T ss_pred CCCCCceecCCC--CHHHHHHHhcc-------CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCC
Confidence 555544444455 99999999998 899999999999996666778999999999999999999999988
Q ss_pred --ChhhhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413 249 --PLAEVCASVDTV--MFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 249 --~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~ 278 (285)
+-....+++++. ++++.|.||| |+|+++++
T Consensus 232 RTGk~fA~e~~gV~PDI~tlaK~LgGG~PigA~la~ 267 (404)
T COG4992 232 RTGKLFAYEHYGVEPDILTLAKALGGGFPIGAMLAT 267 (404)
T ss_pred ccchHHHHHHhCCCCCEEEeeccccCCccceeeEEc
Confidence 344566777777 8888999998 99999887
No 5
>PLN02721 threonine aldolase
Probab=99.95 E-value=1.7e-26 Score=206.80 Aligned_cols=212 Identities=50% Similarity=0.863 Sum_probs=168.0
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV 146 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~ 146 (285)
++++|.++.+..+++.+.+++.+...+...++.++...+|++.+++++|.+..+++++|++++..++.+++..+||+|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~~~~~gd~Vl~ 85 (353)
T PLN02721 6 RVVDLRSDTVTKPTDAMRAAMANAEVDDDVLGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVHCDVRGSEVIL 85 (353)
T ss_pred hhhhhhcccccCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHHccCCCCeEEE
Confidence 46789999989999999999986533333444567789999999999999888999999999998888866338999999
Q ss_pred cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
++++|...+..+... ...|.+++.++.++++.+|+++++++|++....+.+++++|++++++|..||.++|.++
T Consensus 86 ~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~ 159 (353)
T PLN02721 86 GDNSHIHLYENGGIS------TLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEY 159 (353)
T ss_pred cCccceehhcccchh------hhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHH
Confidence 999887665533233 35588888888767778999999999974322222478999999965443399999999
Q ss_pred HHHHHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++|.++|++||+++|+||+|. .......++|.++.++||++++|.|+++++++++++
T Consensus 160 l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~ 226 (353)
T PLN02721 160 TDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIR 226 (353)
T ss_pred HHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHH
Confidence 9999999999999999999965 122233578888999999999988887888887764
No 6
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.94 E-value=1.2e-25 Score=200.14 Aligned_cols=205 Identities=43% Similarity=0.697 Sum_probs=164.4
Q ss_pred eeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
||+++++.+++|.+++++.+.......|+..+...++++.+++++|.+..+++++|++++..++.+++ ++|++|+++++
T Consensus 1 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l~-~~gd~v~~~~~ 79 (338)
T cd06502 1 DFRSDTVTGPTPEMLEAMAAANVGDDVYGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAHT-QPGGSVICHET 79 (338)
T ss_pred CcccccCCCCCHHHHHHHHhcccCCcccCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHhc-CCCCeEEEecC
Confidence 68899999999999999987655444676778899999999999996667999999999999999876 68999999999
Q ss_pred cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~ 229 (285)
+|.+........ ...|.+++.++.+ .+.+|++++++++++..+.+..++++|++++|+|+ |.+++.+++++
T Consensus 80 ~~~~~~~~~~~~------~~~g~~~~~v~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~--g~~~~~~~l~~ 150 (338)
T cd06502 80 AHIYTDEAGAPE------FLSGVKLLPVPGE-NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG--GTVYPLDELKA 150 (338)
T ss_pred cceeeecCCcHH------HHcCceEEeecCC-CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC--ccccCHHHHHH
Confidence 987765432222 2358888888874 46789999999997532223346899999999997 55669999999
Q ss_pred HHHHHHHcCCeEEEeCccC---------ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 230 LKARCQEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 230 i~~la~~~gi~li~Dea~~---------~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|+++|++||+++|+||+|. .......++|+++.|+||++++|.|+++++++++++
T Consensus 151 i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~ 214 (338)
T cd06502 151 ISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIA 214 (338)
T ss_pred HHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHH
Confidence 9999999999999999874 112223578999999999999887877778877654
No 7
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.94 E-value=1.2e-25 Score=203.19 Aligned_cols=201 Identities=19% Similarity=0.181 Sum_probs=163.2
Q ss_pred CeeeeeccCCcCCCcH-HHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCC--------Cc-EEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTM-EMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGK--------EA-AIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~-~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~--------~~-~~~~~~Gs~a~~~al~ 134 (285)
..+++|..+.++.+.| .+.+++.+...... .|.+..+..+||+.+++++.. +. ++.++++++|+..++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 3689999999988665 68888887766532 676788899999999988632 23 6899999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC---CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ---KDGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
+++ .+||+|+++++++........+. |.+++.++.. .++.+|+++|++++++ +||+|+++
T Consensus 108 a~~-~pGDeVlip~P~Y~~y~~~~~~~---------gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-------ktk~i~ln 170 (393)
T COG0436 108 ALL-NPGDEVLIPDPGYPSYEAAVKLA---------GGKPVPVPLDEEENGFKPDLEDLEAAITP-------KTKAIILN 170 (393)
T ss_pred Hhc-CCCCEEEEeCCCCcCHHHHHHhc---------CCEEEEEeCCcCccCCcCCHHHHHhhcCc-------cceEEEEe
Confidence 988 59999999999887665544444 8888888853 3788999999999998 89999999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccCC--eEEEecccccCc--ceeEEee
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASVD--TVMFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~d--v~~~s~sK~l~~--p~gg~~~ 277 (285)
+|+||| |.++++++|++|+++|++||+++|+||+|..+ ..+....| +.+.|+||.+++ ++.|+++
T Consensus 171 ~P~NPT-Gav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v 249 (393)
T COG0436 171 SPNNPT-GAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVV 249 (393)
T ss_pred CCCCCc-CcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEee
Confidence 999999 99999999999999999999999999998721 11112123 448999998776 8889999
Q ss_pred cC-ccccc
Q psy5413 278 GP-EEFIQ 284 (285)
Q Consensus 278 ~~-~~~i~ 284 (285)
++ +++++
T Consensus 250 ~~~~~l~~ 257 (393)
T COG0436 250 GPPEELIA 257 (393)
T ss_pred cChHHHHH
Confidence 87 66553
No 8
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=99.93 E-value=4.9e-26 Score=203.37 Aligned_cols=233 Identities=18% Similarity=0.155 Sum_probs=174.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC--CccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD--VYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~--~y~~~~~ 102 (285)
|..+.++.+.++|+..++.++++++.||+.. .++++|++.+|+.+|+.. +. .+.++..
T Consensus 27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~------------------~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~P 88 (449)
T COG0161 27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVN------------------HGHGRPEIAEAIKKQLDKLPHVMFGGFTHEP 88 (449)
T ss_pred ceeeeecceeEEEeCCCCEEEecccHHHHhh------------------cCcCCHHHHHHHHHHHHhCCchhhcccCCch
Confidence 7778899999999999999999999999962 378999999999998874 22 2223444
Q ss_pred HHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccC------CCeEEe--cCCcceeeeccccccc-cccccccc
Q psy5413 103 CKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRR------DSEIIV--GDCSHIMLWEQGGASQ-TSVYSQIG 170 (285)
Q Consensus 103 ~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~------g~~vi~--~~~~h~~~~~~~~~~~-~~~~~~~~ 170 (285)
..+|.++|+++.. .++++|++|||+|++.|+|++.+++ .+..++ ...||+.+..+..+.. ...++..+
T Consensus 89 a~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~ 168 (449)
T COG0161 89 AIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFY 168 (449)
T ss_pred HHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCcccchheeccCchhhhhhhc
Confidence 9999999999986 6788999999999999999987532 233343 5899998854333321 12222222
Q ss_pred ceee---eeeecCC--------CCC----CCHHHHHHHhcccccccCCceEEEEEecccCC-CCeeeCCHHHHHHHHHHH
Q psy5413 171 RVLM---RGVTNQK--------DGT----FDLDEMEAKFSTADNIHCASTSLVCVENTHNY-CGGTVLPMQWLRELKARC 234 (285)
Q Consensus 171 g~~~---~~~~~~~--------~~~----~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~-~gG~~~~~~~l~~i~~la 234 (285)
...+ ..++.+. .+. -.+++|++.|.++ +.++++++++|++.+. +|..++|+.++++++++|
T Consensus 169 ~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~---g~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC 245 (449)
T COG0161 169 DPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEH---GPETIAAFIVEPVVGGAGGMLVPPPGYLKRVREIC 245 (449)
T ss_pred cccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhc---CcccEEEEEecccccccCCcccCChHHHHHHHHHH
Confidence 2221 1222211 111 2366788888773 2268999999996666 767778899999999999
Q ss_pred HHcCCeEEEeCc-----cCChhhhcccCCeE--EEecccccCc---ceeEEeecCc
Q psy5413 235 QEHNIPVHMDGA-----RLPLAEVCASVDTV--MFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 235 ~~~gi~li~Dea-----~~~~~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~ 280 (285)
++|||++|+||+ |++..+.++++++. ++|++|+|++ |+++++++++
T Consensus 246 ~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~ 301 (449)
T COG0161 246 DKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDR 301 (449)
T ss_pred HHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHH
Confidence 999999999999 44777888888888 8999999988 9999888764
No 9
>PRK10534 L-threonine aldolase; Provisional
Probab=99.92 E-value=2.2e-24 Score=191.82 Aligned_cols=206 Identities=46% Similarity=0.812 Sum_probs=159.7
Q ss_pred eeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413 68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147 (285)
Q Consensus 68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~ 147 (285)
++||++++...++|.+++++.+...+...|++++...+|++.+++++|.+..+++.+|++++..++.+.+ .+|++|+++
T Consensus 1 ~~~~~~~~~~~p~~~~~~a~~~~~~~~~~Y~~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~~-~~gd~vi~~ 79 (333)
T PRK10534 1 MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSHC-ERGEEYIVG 79 (333)
T ss_pred CcccccccCCCCCHHHHHHHHhccCCCcccCCCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHhc-CCCCeeEEe
Confidence 3688877767799999999988766677888889999999999999999999999999999999998876 589998888
Q ss_pred CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL 227 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l 227 (285)
.++|.+.+...+.. ...+.+.+.++.++++.+|+++|+++++++. .+..++++|++++|+| |.+++.+++
T Consensus 80 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~-~~~~~~~lv~l~np~~---G~v~~~~~l 149 (333)
T PRK10534 80 QAAHNYLYEAGGAA------VLGSIQPQPIDAAADGTLPLDKVAAKIKPDD-IHFARTRLLSLENTHN---GKVLPREYL 149 (333)
T ss_pred chhhhhHhcCCchH------HhcCceEEeecCCCCCCCCHHHHHHhhcccC-cCcccceEEEEecCCC---CeecCHHHH
Confidence 77775433322111 1123566777766678899999999986511 1112578999997664 999999999
Q ss_pred HHHHHHHHHcCCeEEEeCccCC---------hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 228 RELKARCQEHNIPVHMDGARLP---------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 228 ~~i~~la~~~gi~li~Dea~~~---------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
++|+++|++||++|++||+|.- ........|.++.++||.++++.|+++++++++++
T Consensus 150 ~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~ 215 (333)
T PRK10534 150 KQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIK 215 (333)
T ss_pred HHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHH
Confidence 9999999999999999998661 11112345777779999999888878888888764
No 10
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=188.43 Aligned_cols=236 Identities=17% Similarity=0.127 Sum_probs=166.7
Q ss_pred CCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCC
Q psy5413 25 PTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDV 96 (285)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~ 96 (285)
+-|..+.++.+.++|+.. |+.|+||.+ -+.++.||.|.+|+++|+.. +..
T Consensus 37 ~~p~~~~ra~G~~l~Dvd----------------------G~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~~ 94 (447)
T COG0160 37 RFPLVIVRAEGAYLYDVD----------------------GNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHTR 94 (447)
T ss_pred cCcceEEecccCEEEeCC----------------------CCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccCC
Confidence 456666666666666633 677788876 35677999999999987763 334
Q ss_pred ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccc--
Q psy5413 97 YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQ-- 168 (285)
Q Consensus 97 y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~-- 168 (285)
|...+...++.++|.+.+. .+.++|++||++||++|++++....|.. ||. ...||+.+.....++.. ..+..
T Consensus 95 ~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~ 174 (447)
T COG0160 95 DLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGF 174 (447)
T ss_pred cccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCC
Confidence 4444668888999988864 3567999999999999999998666653 443 67889988665544431 22211
Q ss_pred -ccceeeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413 169 -IGRVLMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235 (285)
Q Consensus 169 -~~g~~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~ 235 (285)
.....+..+|.+..+ ....+.++..+.. ...+..+++++++|+.++.+|-.+.|.++++++.++|+
T Consensus 175 ~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~-~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~ 253 (447)
T COG0160 175 GPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFD-LEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCR 253 (447)
T ss_pred CCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHh-hcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHH
Confidence 122224445442211 1134456665644 44456689999999999999777788899999999999
Q ss_pred HcCCeEEEeCccC-----ChhhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 236 EHNIPVHMDGARL-----PLAEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 236 ~~gi~li~Dea~~-----~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+||+++|+||+|+ +-....++.++. +.|++|.+++ |+++++ +++++++
T Consensus 254 ~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~Pl~avv-~r~ei~~ 310 (447)
T COG0160 254 EHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGLPLSAVV-GRAEIMD 310 (447)
T ss_pred HcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCCceeEEe-ccHHhcc
Confidence 9999999999988 434555677777 8888899988 877654 5566543
No 11
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.91 E-value=1.7e-23 Score=186.49 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=166.7
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
.-++||.+++.+. +++++.+||.. ++..|+.+|.+.+|++.+++++|.+.++++.+|..+..++++.++.++|+++
T Consensus 41 dV~IDLrSDTgT~apS~~m~aAM~~---GDD~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~~~g~e~ 117 (467)
T TIGR02617 41 DVFIDLLTDSGTGAVTQSMQAAMMR---GDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEK 117 (467)
T ss_pred CeEEECccCCCCCCCCHHHHHHHHc---CCcccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcccccccc
Confidence 4679999999996 99999999986 7789999999999999999999999999999999999999999885578887
Q ss_pred EecCC----cceeeecc-cccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 145 IVGDC----SHIMLWEQ-GGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 145 i~~~~----~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
++... .|.+.+.. ++.+ ...|+..+.++ .+.++.+|+++|+++|+++. .+++..+.
T Consensus 118 g~~~~~~~v~hn~~fett~g~a------~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g---~~~i~~v~ 188 (467)
T TIGR02617 118 GLDRSKMVAFSNYFFDTTQGHS------QINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVG---PNNVPYIV 188 (467)
T ss_pred cccccccccceEEEEecchHHH------HHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcC---CCCceeee
Confidence 76554 45444442 3333 34577766543 23467899999999998631 12566777
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Chhhh----cccCCeEEEeccccc
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PLAEV----CASVDTVMFCLSKGL 268 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~~~~----~~~~dv~~~s~sK~l 268 (285)
++-++|..||+++|.++++++.++|++||+.+++|+++. ++..+ ..++|.+++|++|.+
T Consensus 189 ~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKgl 268 (467)
T TIGR02617 189 ATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDA 268 (467)
T ss_pred eeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCC
Confidence 777788889999999999999999999999999999854 22233 378999999999999
Q ss_pred CcceeEEeecCcc
Q psy5413 269 GAPVGSILAGPEE 281 (285)
Q Consensus 269 ~~p~gg~~~~~~~ 281 (285)
+.|+||+++++++
T Consensus 269 gApvGg~Lag~d~ 281 (467)
T TIGR02617 269 MVPMGGLLCFKDD 281 (467)
T ss_pred CCcccceEEecch
Confidence 9999999999876
No 12
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.91 E-value=1.4e-23 Score=193.08 Aligned_cols=207 Identities=17% Similarity=0.277 Sum_probs=159.7
Q ss_pred cCCeeeeeccCCc--CCCcH----HHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 64 VNIRTVDIRSDTI--SKPTM----EMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 64 ~~~~~~~~~~~~~--~~~~~----~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.|.++++|..+.+ +..+| .+.+++.+++. +...|+..+...+|++.++++++.+.++++++|++|+..++.++
T Consensus 34 ~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~al 113 (460)
T PRK13238 34 AGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVL 113 (460)
T ss_pred cCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHh
Confidence 4667888888776 34333 46776665553 56789988899999999999999999999999999999999988
Q ss_pred cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC----------CCCCCHHHHHHHhcccccccCCceE
Q psy5413 137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK----------DGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
+ ++|| |+++++.+..+.... ...|.+++.++.++ .+.+|+++|+++|++. ..++++
T Consensus 114 l-~pGD-Vii~~p~~~~~~~~i---------~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~---~~~~tk 179 (460)
T PRK13238 114 I-KKGD-VVPSNYHFDTTRAHI---------ELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEV---GAENVP 179 (460)
T ss_pred C-CCCC-EEccCCcccchHHHH---------HHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhc---CCCcee
Confidence 7 6999 777766433322211 23477777777632 2459999999999852 113799
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--hh---------------hh----cccCCeEEEecc
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP--LA---------------EV----CASVDTVMFCLS 265 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~--~~---------------~~----~~~~dv~~~s~s 265 (285)
+|++++|+|++||.+++.+++++|+++|++||++||+|++|.. .. .+ ....|++++|..
T Consensus 180 ~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~ 259 (460)
T PRK13238 180 FIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAK 259 (460)
T ss_pred EEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecc
Confidence 9999999999988999999999999999999999999998741 10 01 145899999999
Q ss_pred cccCcceeEEeecC-ccccc
Q psy5413 266 KGLGAPVGSILAGP-EEFIQ 284 (285)
Q Consensus 266 K~l~~p~gg~~~~~-~~~i~ 284 (285)
|.+.+|.||+++.+ +++++
T Consensus 260 K~g~~~~GG~i~~~d~~l~~ 279 (460)
T PRK13238 260 KDAMVNIGGLLCFRDEDLFT 279 (460)
T ss_pred cCCCCcceeEEEcChHHHHH
Confidence 99888999999987 45543
No 13
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.90 E-value=4.2e-23 Score=182.56 Aligned_cols=231 Identities=18% Similarity=0.115 Sum_probs=169.6
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCCcc-CChhHH
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYL-EDPTCK 104 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~ 104 (285)
.|..+.+..+.+.|+..++.+++-...|..-. .+|.+|.|.+|+++++.....|+ +.+...
T Consensus 35 ~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~i------------------lGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei 96 (432)
T COG0001 35 YPIFIERGKGAYLTDVDGNEYIDYVLGWGPLI------------------LGHAHPAVVEAVQEQLERGLSFGAPTELEV 96 (432)
T ss_pred CCeeEEeccCCeEEeCCCCEeeehhccCcccc------------------cCCCCHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 46677777778888877777777666665532 37899999999999998777776 666778
Q ss_pred HHHHHHHhHcCC-CcEEEcCChHHHHHHHHHHccccCCCeEE--ecCCcceeeeccccccc-c------cccc---cccc
Q psy5413 105 ELQEKAAKLAGK-EAAIFVPSGTMGNLIAIMTHCDRRDSEII--VGDCSHIMLWEQGGASQ-T------SVYS---QIGR 171 (285)
Q Consensus 105 ~l~~~la~~~g~-~~~~~~~~Gs~a~~~al~~~~~~~g~~vi--~~~~~h~~~~~~~~~~~-~------~~~~---~~~g 171 (285)
++.+.+.++++. +.+-|++|||+|.+.|+++++...|+..| ....||+..+....-+. . +... ....
T Consensus 97 ~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a 176 (432)
T COG0001 97 ELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVA 176 (432)
T ss_pred HHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhh
Confidence 899999999887 88899999999999999999876775433 36788887765332110 0 0000 0011
Q ss_pred eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--
Q psy5413 172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-- 249 (285)
Q Consensus 172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-- 249 (285)
..++.+|. .|++.+++++++ .++++++|++|++.+..|....++++|++|+++|++||++||.||+.++
T Consensus 177 ~~ti~~~y-----ND~~al~~~~~~----~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR 247 (432)
T COG0001 177 KHTLVLPY-----NDLEALEEAFEE----YGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFR 247 (432)
T ss_pred ccEEEecC-----CCHHHHHHHHHH----cCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcc
Confidence 11222222 399999999988 4668999999997666634456689999999999999999999999773
Q ss_pred --hhhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 250 --LAEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 250 --~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+......+.+. +.+++|.+|| |.| .+.+++|+++
T Consensus 248 ~~~gGaq~~~gi~PDlttlGKiIGGGlP~g-a~gGr~eiM~ 287 (432)
T COG0001 248 VALGGAQGYYGVEPDLTTLGKIIGGGLPIG-AFGGRAEIME 287 (432)
T ss_pred cCCcccccccCcCcchhhhhhhhcCCccee-eeccHHHHHh
Confidence 34445556666 7888899988 766 5667888876
No 14
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=99.90 E-value=9.6e-23 Score=182.32 Aligned_cols=221 Identities=16% Similarity=0.111 Sum_probs=155.5
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCcc
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYL 98 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~ 98 (285)
|..+.++.+.+.|+.. |++++||.++ +.+++||++.+++.+++... ..|
T Consensus 7 ~~~~~~~~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~- 63 (364)
T PRK04013 7 RLRLVRGEGIYVWDSQ----------------------GRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGPMF- 63 (364)
T ss_pred CccEEEeecCEEEECC----------------------CCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccCCc-
Confidence 4455566777777754 4555665443 45789999999999887642 123
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCC-CeEEe-cCCcceeeecccccccccccccccceeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (285)
.++...+++++++++.+.+.++|++|||+|++.|++++...+| ++|+. ...||+.+.....+...+.+...++..+..
T Consensus 64 ~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~ 143 (364)
T PRK04013 64 EHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPG 143 (364)
T ss_pred CCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCC
Confidence 3566899999999999888899999999999999999886667 45554 567888764433222112222222211111
Q ss_pred eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hh
Q psy5413 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AE 252 (285)
Q Consensus 177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~ 252 (285)
+...+. .|++.+++.+.+ ++++|++|+.++..|....|.+++++++++|++||+++|+||+++++ ..
T Consensus 144 ~~~~~~--~d~~~l~~~i~~-------~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~ 214 (364)
T PRK04013 144 FKHIPF--NDVEAAKEAITK-------ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFL 214 (364)
T ss_pred cEEecC--CCHHHHHHHhcC-------CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchh
Confidence 111011 278899998876 89999999999987666778899999999999999999999998843 22
Q ss_pred hcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413 253 VCASVDTV--MFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 253 ~~~~~dv~--~~s~sK~l~~--p~gg~~~~~ 279 (285)
..+.+++. +.+++|.+++ |+++++...
T Consensus 215 a~~~~gv~PDiv~~gK~lggG~P~~a~~~~~ 245 (364)
T PRK04013 215 AIEHYKVEPDIVTMGKGIGNGVPVSLTLTNF 245 (364)
T ss_pred HHHhcCCCCCEEEecccccCCceeEEEEecc
Confidence 23344554 6777899987 888877653
No 15
>KOG0257|consensus
Probab=99.90 E-value=5.2e-23 Score=179.12 Aligned_cols=195 Identities=17% Similarity=0.132 Sum_probs=144.2
Q ss_pred eccCCcCCCcH-HHHHHHHhcccC--CCCcc----CChhHHHHHHHHHhHcCC-----CcEEEcCChHHHHHHHHHHccc
Q psy5413 71 IRSDTISKPTM-EMKNYMFNCEVG--DDVYL----EDPTCKELQEKAAKLAGK-----EAAIFVPSGTMGNLIAIMTHCD 138 (285)
Q Consensus 71 ~~~~~~~~~~~-~v~~a~~~~~~~--~~~y~----~~~~~~~l~~~la~~~g~-----~~~~~~~~Gs~a~~~al~~~~~ 138 (285)
|..+-++.+.| -+.+++++.+.+ ...|+ ..+....|++.+++++|. +.+++++++.+|+..++..++
T Consensus 36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~- 114 (420)
T KOG0257|consen 36 LGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGLL- 114 (420)
T ss_pred ccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHHc-
Confidence 55555666555 677777766654 23444 444445555555554443 336888889999999999988
Q ss_pred cCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--------CCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--------KDGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
.+||+||+.++++.+......++ |...+.++.. +++.+|.++++.++++ +|++|++
T Consensus 115 ~~GDeVii~eP~fd~Y~~~~~ma---------G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~-------kTk~Ii~ 178 (420)
T KOG0257|consen 115 NPGDEVIVFEPFFDCYIPQVVMA---------GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITE-------KTKAIIL 178 (420)
T ss_pred CCCCEEEEecCcchhhhhHHhhc---------CCcceeeccccccccccCccccCChHHHHhhccC-------CccEEEE
Confidence 59999999988876665544454 5555544432 4677999999999999 8999999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEe
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~ 276 (285)
++|+||+ |.++++++|++|+++|++||+++|.||+|.-+. ... ...-+-+.|++|.++. ++.|++
T Consensus 179 ntPhNPt-GkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~ 257 (420)
T KOG0257|consen 179 NTPHNPT-GKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWA 257 (420)
T ss_pred eCCCCCc-CcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeee
Confidence 9999999 999999999999999999999999999977111 111 1122448999999877 888889
Q ss_pred ecCcccc
Q psy5413 277 AGPEEFI 283 (285)
Q Consensus 277 ~~~~~~i 283 (285)
+++++++
T Consensus 258 igp~~L~ 264 (420)
T KOG0257|consen 258 IGPKHLY 264 (420)
T ss_pred echHHhh
Confidence 8877665
No 16
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.90 E-value=8.1e-23 Score=185.92 Aligned_cols=228 Identities=18% Similarity=0.184 Sum_probs=151.7
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCccCChhH
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVYLEDPTC 103 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~ 103 (285)
|..+.++.+.+.|+..++.+++.+..++. .+.++.||++.+++.+++... ..+...+..
T Consensus 23 p~~~~~~~G~~l~d~~G~~~lD~~~g~~~------------------~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~ 84 (396)
T PRK04073 23 PIVISEAEGVWVKDPEGNRYMDMLSAYSA------------------VNQGHRHPKIIQALKDQADKVTLTSRAFHSDQL 84 (396)
T ss_pred CceEEeeeecEEEECCCCEEEEcCCCHHh------------------ccCCCCCHHHHHHHHHHHhhccccccccCCHHH
Confidence 55666777777777554444443333332 134779999999999887631 112245668
Q ss_pred HHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc--------CC-CeEEe-cCCcceeeeccccccccccccccccee
Q psy5413 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR--------RD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVL 173 (285)
Q Consensus 104 ~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~--------~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~ 173 (285)
.+|+++++++.+.+.++|++||++|++.|++++... +| ++|+. ...+|+.+.....+...+.+...++..
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~ 164 (396)
T PRK04073 85 GPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPM 164 (396)
T ss_pred HHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCC
Confidence 899999999998888999999999999999998532 34 34544 567888775433222111121111111
Q ss_pred ---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413 174 ---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL 250 (285)
Q Consensus 174 ---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~ 250 (285)
+..++. .|++++++.+++ ++++|++++++|++|....+.+++++|.++|++||+++|+||+|+++
T Consensus 165 ~~~~~~~~~-----~d~~~l~~~i~~-------~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~ 232 (396)
T PRK04073 165 LPGIKKIPY-----GDLEALKAAITP-------NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGL 232 (396)
T ss_pred CCCceEeCC-----CCHHHHHHhccc-------CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCC
Confidence 122222 288999999876 78999999999999444445678999999999999999999998843
Q ss_pred h-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 251 A-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 251 ~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
. ...+..++. +.+++|.+++ .+.|++++++++++
T Consensus 233 g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~~ig~~~~~~~i~~ 275 (396)
T PRK04073 233 GRTGKLFACDWDNVTPDMYILGKALGGGVFPISCVAANRDILG 275 (396)
T ss_pred CcCcHHHHhhhcCCCCCEEEecccccCCCCcceEEEEcHHHHh
Confidence 2 111222221 4567899877 23456667776654
No 17
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.90 E-value=1.4e-22 Score=184.28 Aligned_cols=223 Identities=19% Similarity=0.197 Sum_probs=152.8
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYL 98 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~ 98 (285)
.|..+.++.+.+.|+.. |++++||.+ .+.++.+|+|.+++.+++... ....
T Consensus 17 ~~~~~~~~~G~~l~d~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~ 74 (397)
T TIGR03246 17 APFIPVRGEGSRVWDQQ----------------------GKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGY 74 (397)
T ss_pred CCceEEEeecCEEEeCC----------------------CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCcc
Confidence 35666677777777743 556677765 356779999999999887631 1112
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeeccccccccccccccc
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIG 170 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~ 170 (285)
.++...+|+++|+++.+.+.++|++||++|++.|++++... +++ .|+ ....||+.+.....++..+.+...+
T Consensus 75 ~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03246 75 TNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGF 154 (397)
T ss_pred CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCC
Confidence 35668899999999998888999999999999999998532 233 344 4678898875332222111111111
Q ss_pred ---ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 171 ---RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 171 ---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
...+..++. .|++++++.+.+ ++++|++|++++++|....|.++|++|+++|++||+++|+||+|
T Consensus 155 ~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 222 (397)
T TIGR03246 155 APLPGGIKHAPY-----NDLAAAKALISD-------KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ 222 (397)
T ss_pred CCCCCceEEeCC-----CCHHHHHHHhcc-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 112222332 389999999976 79999999998887334458999999999999999999999998
Q ss_pred CChh-----hhcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413 248 LPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 248 ~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
+++. ......++. +.+++|.+++ |.|+++ ++++++
T Consensus 223 tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG~pigav~-~~~~i~ 266 (397)
T TIGR03246 223 TGVGRTGELYAYMHYGVTPDILTSAKALGGGFPIGAML-TTTEIA 266 (397)
T ss_pred hcCCccccchhhhhcCCCCCEEEeehhhhCCcceeEEE-EcHHHH
Confidence 7441 122222322 5688899965 666655 455554
No 18
>KOG1401|consensus
Probab=99.90 E-value=9.4e-23 Score=176.71 Aligned_cols=227 Identities=18% Similarity=0.187 Sum_probs=168.6
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CC--CccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DD--VYLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~--~y~~~~ 101 (285)
.|..+.+.++..+|+..++.+++.++.||... +++.+|++.+++.++... |. .|...+
T Consensus 38 ~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~------------------~Ghanpev~ral~~q~~k~~hs~~~~~t~e 99 (433)
T KOG1401|consen 38 YPVVIESGKGSKLFDPDGKEYIDFTSSWAVTI------------------LGHANPEVARALAEQAKKLGHSSNGYFTLE 99 (433)
T ss_pred CceeeecceeeeeecCCcceeeeeccceeccc------------------cCCCCHHHHHHHHHHHhhheeccCccccHH
Confidence 34777777888899999999999999999852 277899999999887763 33 333344
Q ss_pred hHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHccccCCC--------eEEecCCcceeeeccccccccccccccc
Q psy5413 102 TCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDRRDS--------EIIVGDCSHIMLWEQGGASQTSVYSQIG 170 (285)
Q Consensus 102 ~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~~g~--------~vi~~~~~h~~~~~~~~~~~~~~~~~~~ 170 (285)
..++++.+.+.. ..++++|+||||+|++.|++++++..+. .|-+.+.||+.+..+........|.-.+
T Consensus 100 -av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~ 178 (433)
T KOG1401|consen 100 -AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPF 178 (433)
T ss_pred -HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcccccCCCC
Confidence 888999999998 5678899999999999999998743321 2334688898774433222122232212
Q ss_pred ce---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 171 RV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 171 g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
+. .++..+ ..|.+++++.++. |.+.+++||+|+.++.+|...++++++..|+.+|+++|++||.||++
T Consensus 179 ~p~~p~v~~~~-----ynd~t~l~k~~~~----h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~ 249 (433)
T KOG1401|consen 179 DPIAPDVVTAE-----YNDSTALEKLFES----HKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ 249 (433)
T ss_pred CCCCCceeecc-----cCCHHHHHHHHHh----CCCceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh
Confidence 11 111111 2389999999988 56679999999999999778889999999999999999999999998
Q ss_pred CCh-----hhhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413 248 LPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 248 ~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~ 280 (285)
+++ ..+.+++.+. +.|+.|.|++ |+|+++++++
T Consensus 250 tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGlPigA~~v~~k 291 (433)
T KOG1401|consen 250 TGLGRLGYGWAQEYFGVTPDITTVAKPLGGGLPIGATGVRDK 291 (433)
T ss_pred hCccccchHHHHHHhCcCCcceeehhhccCCceeEEEeehHH
Confidence 843 3333444444 7777899988 9999888764
No 19
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.90 E-value=1.5e-22 Score=183.51 Aligned_cols=194 Identities=14% Similarity=0.229 Sum_probs=155.2
Q ss_pred CCCcHHHHHHHHhcccCCC---------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413 77 SKPTMEMKNYMFNCEVGDD---------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~---------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~ 147 (285)
+...+++.+++.+...+.. .+...+...++++.+++++|.+.+++++||++|+..++.+++ ++|++|+++
T Consensus 30 ~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l~-~~gd~Vlv~ 108 (387)
T PRK09331 30 GILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSLC-KKGDYVVLD 108 (387)
T ss_pred CCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc-CCCCEEEEC
Confidence 4467799999887664311 112456789999999999999999999999999999999987 689999999
Q ss_pred CCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~ 225 (285)
...|.+..... ...|.+++.++. ++++.+|++++++++++..+.+.+++++|+++++++++ |.+.|
T Consensus 109 ~~~h~s~~~~~---------~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~t-G~~~~-- 176 (387)
T PRK09331 109 GLAHYTSYVAA---------ERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNY-GNLAD-- 176 (387)
T ss_pred CCchHHHHHHH---------HHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCC-ccccc--
Confidence 98887775432 244888888887 56777999999999975211122468999999999998 89999
Q ss_pred HHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413 226 WLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
+++|+++|++||+++|+|++|+ + ......++|+++.|+||++++ +.+|++++++++++
T Consensus 177 -l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~ 239 (387)
T PRK09331 177 -AKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYAD 239 (387)
T ss_pred -HHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence 9999999999999999999998 2 333345789999999999987 55778888887665
No 20
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.90 E-value=8.7e-23 Score=181.64 Aligned_cols=199 Identities=24% Similarity=0.271 Sum_probs=162.9
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|.++++-+ .||++++++.+.+.. ...+++.+.+.+||+.||+++|.+.+++++||-.||..++.
T Consensus 38 ~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~ 117 (388)
T COG0156 38 GRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLS 117 (388)
T ss_pred CceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHH
Confidence 57899999888777 788888887766542 12567888899999999999999999999999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ +++|.|+.+...|.+......++ +.+++.++. .|+++||+.+++...... +.++|+++.+.
T Consensus 118 ~l~-~~~dli~~D~lnHASiidG~rls---------~a~~~~f~H-----nD~~~Le~~l~~~~~~~~-~~~~IvtegVf 181 (388)
T COG0156 118 ALL-KKGDLIFSDELNHASIIDGIRLS---------RAEVRRFKH-----NDLDHLEALLEEARENGA-RRKLIVTEGVF 181 (388)
T ss_pred Hhc-CCCcEEEEechhhhhHHHHHHhC---------CCcEEEecC-----CCHHHHHHHHHhhhccCC-CceEEEEeccc
Confidence 988 57887888888898876655555 667666665 599999999987432222 56899999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chhhhc----ccCCeEEEecccccCcceeEEeecCcc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLAEVC----ASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~~~~----~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+.. |.+.| |++|++++++||.++++||+|+ ++.... ...|+++.|++|.||. .||+++++++
T Consensus 182 SMd-GdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs-~Gg~v~g~~~ 256 (388)
T COG0156 182 SMD-GDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGS-SGGYIAGSAA 256 (388)
T ss_pred cCC-CCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcc-cCceeeCcHH
Confidence 999 99999 9999999999999999999988 222111 3347889999999996 8999999987
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 257 ~~d 259 (388)
T COG0156 257 LID 259 (388)
T ss_pred HHH
Confidence 764
No 21
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.89 E-value=1.9e-22 Score=185.84 Aligned_cols=211 Identities=17% Similarity=0.132 Sum_probs=146.7
Q ss_pred cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCc-cCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHcc
Q psy5413 64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVY-LEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
.|++++||.++ +.++.+|+|.+++.+++.....+ ..++...+|.+.|++.. +.+.++|++|||+|++.|++++.
T Consensus 97 dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR 176 (474)
T PLN02482 97 DGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLAR 176 (474)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHH
Confidence 47888888654 45679999999999888743333 25566788999998886 46778999999999999999998
Q ss_pred ccCCCe-EEe-cCCcceeeeccccccccc--ccc--cccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413 138 DRRDSE-IIV-GDCSHIMLWEQGGASQTS--VYS--QIGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 138 ~~~g~~-vi~-~~~~h~~~~~~~~~~~~~--~~~--~~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
..+|+. |+. ...||+.+.......... .+. ...+. .++.++. .|++++++.+++ +.+++
T Consensus 177 ~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~----~~~~i 247 (474)
T PLN02482 177 AYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKKLFEA----NKGEI 247 (474)
T ss_pred HhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHHHHHh----CCCce
Confidence 766764 333 577898653322111000 000 00011 1112222 388999999875 34589
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc--ceeEEee
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~ 277 (285)
++|++|++++..|....+++++++|+++|++||+++|+||+++++ ....+++++. +.+++|++++ |+|++ +
T Consensus 248 AavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~gK~lggG~Pigav-~ 326 (474)
T PLN02482 248 AAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTLGKVIGGGLPVGAY-G 326 (474)
T ss_pred EEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEecchhhCCCceEEE-E
Confidence 999999999887444555899999999999999999999998843 2223333433 5677899987 88887 5
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
+++++++
T Consensus 327 g~~ei~~ 333 (474)
T PLN02482 327 GRREIME 333 (474)
T ss_pred EcHHHHH
Confidence 6666653
No 22
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.89 E-value=2.6e-22 Score=188.31 Aligned_cols=196 Identities=11% Similarity=0.054 Sum_probs=152.6
Q ss_pred cCCeeeeeccCCcC---C-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHHH
Q psy5413 64 VNIRTVDIRSDTIS---K-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNLI 131 (285)
Q Consensus 64 ~~~~~~~~~~~~~~---~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~~ 131 (285)
.|+.+++|..+++. . .++.+.+++.+.......|....+..+|++.+++++ +. +.+++++|+++++..
T Consensus 144 ~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~ 223 (517)
T PRK13355 144 AGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINL 223 (517)
T ss_pred cCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHH
Confidence 56789999998884 2 466888888776655556887777899999999997 32 346888888999999
Q ss_pred HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
++.+++ ++||+|+++.++|....... ...|.+++.++.++ ++.+|++++++++++ ++++|+
T Consensus 224 ~~~~l~-~~Gd~Vli~~P~y~~y~~~~---------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~k~i~ 286 (517)
T PRK13355 224 SMSALL-DDGDEVLIPSPDYPLWTACV---------NLAGGTAVHYRCDEQSEWYPDIDDIRSKITS-------RTKAIV 286 (517)
T ss_pred HHHHhC-CCCCEEEEcCCCCcCHHHHH---------HHCCCEEEEeecCcccCCCCCHHHHHHhcCc-------CceEEE
Confidence 999887 69999999988875543322 23478888887643 467899999999977 789999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccC--cceeEEe
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLG--APVGSIL 276 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~--~p~gg~~ 276 (285)
+++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+....-++ +.|+||.++ |.+.|++
T Consensus 287 i~nP~NPT-G~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~ 365 (517)
T PRK13355 287 IINPNNPT-GALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWM 365 (517)
T ss_pred EECCCCCC-CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEE
Confidence 99999999 999999999999999999999999999977221 111121233 589999864 4677787
Q ss_pred e
Q psy5413 277 A 277 (285)
Q Consensus 277 ~ 277 (285)
+
T Consensus 366 i 366 (517)
T PRK13355 366 I 366 (517)
T ss_pred E
Confidence 7
No 23
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.89 E-value=2.6e-22 Score=182.62 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=150.7
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcc-cCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCE-VGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEII 145 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~-~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi 145 (285)
.++||.+++.+ ..|.+++.+.+ .++..|+.++...+|++.+++++|.+.++.+++|++|+..++.+++ ++||+|
T Consensus 21 v~iDlltds~t---~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al~-~pGD~V- 95 (431)
T cd00617 21 VYIDLLTDSGT---GAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSILL-KPGRTV- 95 (431)
T ss_pred cCCCCCCCCCc---HHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHhC-CCCCEE-
Confidence 33455544433 44544444433 3556799889999999999999999999999999999999999887 699976
Q ss_pred ecCCcceeeecccccccccccccccceeeeeeecC----------CCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413 146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ----------KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN 215 (285)
Q Consensus 146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n 215 (285)
++++ |+..+.. .+ ...|.+.+.++.+ ..+.+|+++|+++|++. ...++++|+++.|+|
T Consensus 96 ~~~~-~f~~~~~-~i-------~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~---~~~~~~~I~v~~p~N 163 (431)
T cd00617 96 PSNM-HFDTTRG-HI-------EANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV---GAENIPYIVLTITNN 163 (431)
T ss_pred ccCC-cccchHH-HH-------HhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcc---cCCCccEEEEECCcC
Confidence 4443 3332211 11 2337777766653 23559999999999862 123589999999999
Q ss_pred CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----------------hhh----hcccCCeEEEecccccCcceeE
Q psy5413 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----------------LAE----VCASVDTVMFCLSKGLGAPVGS 274 (285)
Q Consensus 216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----------------~~~----~~~~~dv~~~s~sK~l~~p~gg 274 (285)
++||.+++.++|++|+++|++||++||.|+++.. +.. .....|.+++|++|.++.+.||
T Consensus 164 ~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~GG 243 (431)
T cd00617 164 TAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGG 243 (431)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccce
Confidence 9889999999999999999999999999999651 111 1246889999999998889999
Q ss_pred EeecCc-cccc
Q psy5413 275 ILAGPE-EFIQ 284 (285)
Q Consensus 275 ~~~~~~-~~i~ 284 (285)
++++++ ++++
T Consensus 244 ~i~~~d~~l~~ 254 (431)
T cd00617 244 FLALRDDELYE 254 (431)
T ss_pred EEEeCcHHHHH
Confidence 999876 4654
No 24
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.89 E-value=2.8e-22 Score=180.14 Aligned_cols=202 Identities=17% Similarity=0.236 Sum_probs=160.0
Q ss_pred CeeeeeccCCcCCCcHHHHHH-HHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 66 IRTVDIRSDTISKPTMEMKNY-MFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a-~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
.-+|||.+++.+ +.|.++ |.....++..|+.++.+.+|++.+++++|.+.++++++|+.|+..+..+.+ ++||+|
T Consensus 38 ~v~iDLltDsgT---~aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~l-~pGDeV 113 (450)
T TIGR02618 38 DVYIDLLTDSGT---NAMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIAI-KPGDYV 113 (450)
T ss_pred ceEEEcccCCCc---HHHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhCC-CCcCEE
Confidence 467899998876 888888 777777888899999999999999999999999999999999887665555 689966
Q ss_pred EecCCcceeeecccccccccccccccceeeeeeec----------CCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN----------QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+.++|..+.... + ...|..++.++. +.++.+|+++|+++|++. +..++++|.++.++
T Consensus 114 --psn~~f~Tt~ah-I-------e~~Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~---~~~~~~lV~~e~t~ 180 (450)
T TIGR02618 114 --PGNMYFTTTRYH-Q-------EKNGATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV---GADKIPYICLAVTV 180 (450)
T ss_pred --CCceeHHHHHHH-H-------HhCCeEEEeeecccccccccCCCCCCCcCHHHHHHHhccc---cCcccCceEEEEec
Confidence 456654443320 1 122555555532 345789999999999863 22356789999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Ch----hhhcccCCeEEEecccccCccee
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PL----AEVCASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~----~~~~~~~dv~~~s~sK~l~~p~g 273 (285)
|..||.+++.++++++.++|++||++||.|.+|. ++ ..+..++|.+++|..|..++|+|
T Consensus 181 N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G 260 (450)
T TIGR02618 181 NLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG 260 (450)
T ss_pred ccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc
Confidence 9888999999999999999999999999999976 11 23346899999999999999999
Q ss_pred EEee-cCccccc
Q psy5413 274 SILA-GPEEFIQ 284 (285)
Q Consensus 274 g~~~-~~~~~i~ 284 (285)
|+++ +++++++
T Consensus 261 G~l~~~d~~l~~ 272 (450)
T TIGR02618 261 GFLCMNDDEMFQ 272 (450)
T ss_pred eEEEeCCHHHHH
Confidence 9999 6777654
No 25
>PRK07482 hypothetical protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=185.70 Aligned_cols=232 Identities=15% Similarity=0.064 Sum_probs=155.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~~ 101 (285)
|..+.++.+.+.|+..++.+++.++.|+.. +.++.+|+|.+|+.+++.... .+ ..++
T Consensus 33 p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~------------------~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~ 94 (461)
T PRK07482 33 GRIVEGGEGIRITDAQGRRYIDAFAGLYCV------------------NVGYGRTEVAEAIAEQAKELAYYHTYVGHGTE 94 (461)
T ss_pred CeeEEeeeeeEEEECCCCEEEEcccchhhh------------------cCCCCCHHHHHHHHHHHHhcCccccccccCCH
Confidence 566777888888886655555555444432 347899999999998876421 11 2456
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...+|.++|++... .++++|++|||+|++.|++++... +++ +||. ...||+.+.....++..+.|...++
T Consensus 95 ~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~ 174 (461)
T PRK07482 95 ASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFD 174 (461)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccC
Confidence 68899999999873 567899999999999999998632 233 3443 5788987643332221122222222
Q ss_pred ee---eeeeecCCCC-------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413 172 VL---MRGVTNQKDG-------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235 (285)
Q Consensus 172 ~~---~~~~~~~~~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~ 235 (285)
.. +..++.+... ..+++++++.+... +.+++++|++|++++..|..+.|.+++++|+++|+
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~ 251 (461)
T PRK07482 175 LPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE---GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLK 251 (461)
T ss_pred CCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc---CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHH
Confidence 11 1122221110 01467788877531 23479999999999887555578899999999999
Q ss_pred HcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 236 EHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 236 ~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
+||+++|+||+++++ ....++.++. +.+++|++++ |+++++.++
T Consensus 252 ~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ 305 (461)
T PRK07482 252 KYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGE 305 (461)
T ss_pred HhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecH
Confidence 999999999998844 2344555555 6777899976 788877654
No 26
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.89 E-value=6.2e-22 Score=179.75 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=152.1
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCccC
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYLE 99 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~~ 99 (285)
|..+.++.+.+.|+.. |++++||.+ .+.++.+|++.+++.+++... .....
T Consensus 14 ~~~~~~~~G~~~~d~d----------------------G~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~ 71 (389)
T PRK01278 14 DLAFERGEGVWLIDED----------------------GERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYR 71 (389)
T ss_pred CceEEeeecCEEEECC----------------------CCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccC
Confidence 5566677777777643 556677665 355779999999999887531 11124
Q ss_pred ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc---cCCC----eEEe-cCCcceeeecccccccccccccccc
Q psy5413 100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD---RRDS----EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 100 ~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~---~~g~----~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
++...+++++++++.+.+.++|++||++|++.+++++.. .+|+ +|++ ...||+++.........+.+...++
T Consensus 72 ~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 151 (389)
T PRK01278 72 IPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFG 151 (389)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCC
Confidence 667889999999998878899999999999999998742 2343 5655 5677877654332221111110000
Q ss_pred e---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 172 V---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 172 ~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
. .+..++ ..|++++++.+++ ++++|++++++|++|..+++.+++++|+++|++||+++|+||+|+
T Consensus 152 ~~~~~~~~~~-----~~d~~~l~~~l~~-------~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~ 219 (389)
T PRK01278 152 PLVPGFDQVP-----FGDIEALKAAITP-------NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC 219 (389)
T ss_pred CCCCCceEeC-----CCCHHHHHHhhCC-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 0 001111 2489999999976 799999999999885589999999999999999999999999988
Q ss_pred Chhh-----hcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413 249 PLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 249 ~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
++.. ..+..++. +.+++|.+++ |.|+ ++++++++
T Consensus 220 g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~ig~-~~~~~~~~ 262 (389)
T PRK01278 220 GMGRTGKLFAHEWAGVTPDIMAVAKGIGGGFPLGA-CLATEEAA 262 (389)
T ss_pred CCCcCCcceeecccCCCCCEEEEehhccCCcceEE-EEEcHHHH
Confidence 4421 11122222 5688999976 5555 45555554
No 27
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.89 E-value=4.2e-22 Score=182.57 Aligned_cols=210 Identities=14% Similarity=0.086 Sum_probs=144.3
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD 138 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~ 138 (285)
|++++||.++ +.++.||+|.+|+.+++.... ....++...++.++|++.. +.+.++|++|||+|++.|++++..
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~ 131 (428)
T PRK12389 52 GNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARA 131 (428)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 4555555433 347799999999998876422 2235677889999998876 456789999999999999999986
Q ss_pred cCCCe-EEe-cCCcceeeeccccccccccccc----ccc------eeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413 139 RRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----IGR------VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 139 ~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g------~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
.+|+. |+. ...||+.+...........+.. ..+ ..+..++. .|++.+++.+++ +.++++
T Consensus 132 ~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~----~~~~va 202 (428)
T PRK12389 132 YTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKEALDK----WGDEVA 202 (428)
T ss_pred hhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHHHHHh----cCCcEE
Confidence 66654 333 5778987643222210000000 001 11122222 378999998875 334799
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~ 278 (285)
+|++|++++..|....|.+++++|+++|++||+++|+||+++++. ...++.++. +.+++|++++ |+|+++ +
T Consensus 203 avi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~gK~lggG~Pi~av~-~ 281 (428)
T PRK12389 203 AVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALGKIIGGGLPIGAYG-G 281 (428)
T ss_pred EEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeechhhcCCCceeEEe-E
Confidence 999999999874456678999999999999999999999998551 122334444 5788899987 888875 5
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 282 ~~~i~~ 287 (428)
T PRK12389 282 RKDIME 287 (428)
T ss_pred HHHHHh
Confidence 555543
No 28
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.89 E-value=3.9e-22 Score=181.25 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=151.9
Q ss_pred CCeeeeeccCCc-CC-CcHHHHHHHHhcccCC-CCc-------cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTI-SK-PTMEMKNYMFNCEVGD-DVY-------LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~-~~-~~~~v~~a~~~~~~~~-~~y-------~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|+++++|.++++ +. .+|++++++.+..... ..| +..+.+.++|+.+++++|.+.+++++||++|+..++.
T Consensus 37 g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~ 116 (393)
T TIGR01822 37 GREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFE 116 (393)
T ss_pred CceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHH
Confidence 678899998886 44 4789998887665431 122 2345679999999999999988888999999999988
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ ++||+|++++++|.+......+. +...+.++ .+|++++++++++... ...++++|++++++
T Consensus 117 ~l~-~~gd~vi~~~~~~~s~~~~~~~~---------~~~~~~~~-----~~d~~~l~~~i~~~~~-~~~~~~~v~~~~v~ 180 (393)
T TIGR01822 117 TLL-GAEDAIISDALNHASIIDGVRLC---------KAKRYRYA-----NNDMADLEAQLKEARA-AGARHRLIATDGVF 180 (393)
T ss_pred HhC-CCCCEEEEeccccHHHHHHHHhc---------CCceEEeC-----CCCHHHHHHHHHhhhh-cCCCceEEEEeCCc
Confidence 876 69999999999887654322222 33332222 3699999999975211 12268899999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
|++ |.+.| +++|+++|++||+++|+||+|. +.. ....+.|+++.|+||+++++++|++++++++
T Consensus 181 ~~t-G~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~ 256 (393)
T TIGR01822 181 SMD-GVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEV 256 (393)
T ss_pred cCC-CCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHH
Confidence 999 89999 9999999999999999999985 211 1123568889999999998889999988876
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 257 ~~ 258 (393)
T TIGR01822 257 VE 258 (393)
T ss_pred HH
Confidence 54
No 29
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.88 E-value=5.3e-22 Score=182.71 Aligned_cols=225 Identities=18% Similarity=0.187 Sum_probs=154.0
Q ss_pred Ccccccccc-ccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413 27 PALVESTPL-SRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYL 98 (285)
Q Consensus 27 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~ 98 (285)
|..+.++.+ .++|+.. |++++||.++ +.++++|+|.+|+.+++... ..+.
T Consensus 64 ~~~~~~~~G~~~l~D~d----------------------G~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~ 121 (459)
T PRK11522 64 GAVEWQAGGLNTLVDTQ----------------------GQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQEL 121 (459)
T ss_pred CeeEEeccCeEEEEECC----------------------CCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccccc
Confidence 445556666 6777654 4555555443 44779999999999887632 2234
Q ss_pred CChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccCC---C-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 99 EDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRRD---S-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~g---~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
.++...+|.++|+++.. .+.++|++|||+|++.|++++....+ + .|+. ...||+.+...........|...++
T Consensus 122 ~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~ 201 (459)
T PRK11522 122 LDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFM 201 (459)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCC
Confidence 56778899999999864 45689999999999999999875443 3 3443 5788987754333321122221111
Q ss_pred ee---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 172 VL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 172 ~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
.. +..+|. .|++++++.++.. ..+++++++|++|++++..|..+.|+++|++++++|++||+++|+||+++
T Consensus 202 ~~~~~~~~~~~-----~d~~~l~~~l~~~-~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t 275 (459)
T PRK11522 202 PLLPGFRHVPF-----GNIEAMRTALSEC-KKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT 275 (459)
T ss_pred CCCCCCcccCC-----CCHHHHHHHHHHh-hccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee
Confidence 11 112222 2788888888642 12345799999999999885556778999999999999999999999987
Q ss_pred Ch-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 249 PL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 249 ~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
++ ....++.++. +.+++|.+++ |+|++++++
T Consensus 276 G~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~ 316 (459)
T PRK11522 276 GMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATE 316 (459)
T ss_pred cCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcH
Confidence 43 2233444444 5688899986 888888764
No 30
>PRK08960 hypothetical protein; Provisional
Probab=99.88 E-value=1e-21 Score=178.18 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=157.1
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|..+.+.. +++.+.+++.+.... ...|.......++++.++++++ .+.+++++|+++|+..++.
T Consensus 31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~ 110 (387)
T PRK08960 31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASS 110 (387)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHH
Confidence 56789999888875 577899998876653 3467766778899999999863 2446899999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+++ .+||+|+++++.|....... ...|.+++.++.+.+ +.+|++++++++++ +++++++++
T Consensus 111 ~~~-~~gd~vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~ 173 (387)
T PRK08960 111 LLV-DPGKHWLLADPGYPCNRHFL---------RLVEGAAQLVPVGPDSRYQLTPALVERHWNA-------DTVGALVAS 173 (387)
T ss_pred Hhc-CCCCEEEEcCCCCcchHHHH---------HhcCCeEEEEecCcccCCCCCHHHHHHHhCc-------cceEEEEEC
Confidence 887 69999999988876543322 233677777776433 46899999999887 678999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-ccCCe-EEEecccccCc--ceeEEeecCccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC-ASVDT-VMFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-~~~dv-~~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. ...++ ++.|+||.++. .+.|++++++++
T Consensus 174 p~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~ 252 (387)
T PRK08960 174 PANPT-GTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAA 252 (387)
T ss_pred CCCCC-CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHH
Confidence 99999 999999999999999999999999999987321 111 12244 48999998864 678899888877
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 253 ~~ 254 (387)
T PRK08960 253 VP 254 (387)
T ss_pred HH
Confidence 64
No 31
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.88 E-value=8e-22 Score=179.86 Aligned_cols=223 Identities=18% Similarity=0.210 Sum_probs=150.1
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeecc----CCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRS----DTISKPTMEMKNYMFNCEVGD---DVYL 98 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~---~~y~ 98 (285)
.|..+.++.+.+.|+.. |++++||.+ .+.++.||+|.+|+.+++... ....
T Consensus 21 ~~~~~~~~~G~~~~d~d----------------------G~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~ 78 (406)
T PRK12381 21 APFIPVRGEGSRLWDQQ----------------------GKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGY 78 (406)
T ss_pred CCceEEEeecCEEEeCC----------------------CCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCcc
Confidence 35566677778888754 445566654 355789999999999887531 1112
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc------CC-CeEE-ecCCcceeeeccccccccccccccc
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR------RD-SEII-VGDCSHIMLWEQGGASQTSVYSQIG 170 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~------~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~ 170 (285)
.++...+++++++++.+.+.++|++||++|++.|++++... ++ ..|+ ....||+.+.....+...+.+...+
T Consensus 79 ~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~ 158 (406)
T PRK12381 79 TNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDF 158 (406)
T ss_pred CCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCC
Confidence 35668899999999988888999999999999999997533 13 3344 3678898875332222112222111
Q ss_pred cee---eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 171 RVL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 171 g~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.. +..++ ..|++++++.+++ ++++|++|+.++.. |.. .|.+++++|+++|++||+++|+||+
T Consensus 159 ~~~~~~~~~~~-----~~d~~~l~~~l~~-------~~aaviiEPv~~~g-g~~~~~~~~l~~l~~l~~~~~~llI~DEv 225 (406)
T PRK12381 159 APLPPDIRHAA-----YNDLNSASALIDD-------QTCAVIVEPIQGEG-GVIPADKAFLQGLRELCDRHNALLIFDEV 225 (406)
T ss_pred CCCCCCeeEeC-----CCCHHHHHHhccC-------CeeEEEEeCCcCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEcch
Confidence 111 11222 2488999999976 79999999776654 554 4799999999999999999999999
Q ss_pred cCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 247 RLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 247 ~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|+++. ...+..++. +.+++|++++ |+|++ +.++++++
T Consensus 226 ~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG~~ig~~-~~~~~~~~ 271 (406)
T PRK12381 226 QTGVGRTGELYAYMHYGVTPDVLTTAKALGGGFPIGAM-LTTEKCAS 271 (406)
T ss_pred hhCCCCCcchhhhHhhCCCCCEEEehhhhhCCCceEEE-EEcHHHHh
Confidence 87431 111222222 5788999966 65554 45565543
No 32
>PRK07179 hypothetical protein; Provisional
Probab=99.88 E-value=6.4e-22 Score=180.71 Aligned_cols=193 Identities=17% Similarity=0.279 Sum_probs=148.9
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccC-------CCCcc-CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG-------DDVYL-EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-------~~~y~-~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|..+++|.+.++-. .+|++++++.++... ...+. ..+...+|++.+++++|.+.++++++|++|++.+++
T Consensus 53 g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~ 132 (407)
T PRK07179 53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQ 132 (407)
T ss_pred CCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence 56788988765554 689999998887642 11222 335689999999999999999999999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
++. .+|+.++++...|.+....... .+.+++.++ ..|+++++++++++ ++++|++++++
T Consensus 133 ~l~-~~g~~v~~~~~~h~s~~~~~~~---------~g~~~~~~~-----~~d~~~l~~~l~~~------~~~lV~v~~v~ 191 (407)
T PRK07179 133 TIA-DPNTPVYIDFFAHMSLWEGVRA---------AGAQAHPFR-----HNDVDHLRRQIERH------GPGIIVVDSVY 191 (407)
T ss_pred HhC-CCCCEEEEECCcCHHHHHHHHH---------CCCeEEEec-----CCCHHHHHHHHHhc------CCeEEEECCCC
Confidence 987 5889898888888666432222 255554443 25999999999752 47899999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--------h-h--hcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--------A-E--VCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--------~-~--~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
|++ |.+.| +++|+++|++||+++|+||+|+ +. . . ....+|+++.|+||++++ ++|++++++++
T Consensus 192 n~t-G~i~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~-~~G~l~~~~~~ 266 (407)
T PRK07179 192 STT-GTIAP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG-RAGIITCPREL 266 (407)
T ss_pred CCC-Ccccc---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhc-cCeEEEeCHHH
Confidence 999 99999 9999999999999999999987 11 1 1 112458889999999987 47778877766
Q ss_pred c
Q psy5413 283 I 283 (285)
Q Consensus 283 i 283 (285)
+
T Consensus 267 ~ 267 (407)
T PRK07179 267 A 267 (407)
T ss_pred H
Confidence 4
No 33
>PRK05965 hypothetical protein; Provisional
Probab=99.88 E-value=6.8e-22 Score=182.36 Aligned_cols=234 Identities=15% Similarity=0.144 Sum_probs=156.1
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----Cc-cCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VY-LEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y-~~~~ 101 (285)
|..+.++.+.+.|+..++.+++.+..|+.. +.++.||+|.+|+.+++.... .+ ..++
T Consensus 29 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~ 90 (459)
T PRK05965 29 VTVLASAKGATLTDASGHQLLDAFAGLWCV------------------NVGYGQESIVEAAAEQMRELPYATGYFHFGSE 90 (459)
T ss_pred CceEEeeeEeEEEECCCCEEEECcccHHhc------------------cCCCCCHHHHHHHHHHHHhcCCcccccccCCH
Confidence 556777788888876666555555444432 337899999999998876421 22 2356
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...+|.++|++.+. .+.++|++|||+|++.|++++... +++ +|| ....||+.+.....+...+.+...++
T Consensus 91 ~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~ 170 (459)
T PRK05965 91 PAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFD 170 (459)
T ss_pred HHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccC
Confidence 67899999999873 567899999999999999998643 233 344 36788987743222221122222222
Q ss_pred e---eeeeeecCC--C--CCCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 172 V---LMRGVTNQK--D--GTFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 172 ~---~~~~~~~~~--~--~~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
. .+..++.+. . ...| ++++++.|+.. +.+++++|++|++++..|..+.|.+++++|+++|++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~ 247 (459)
T PRK05965 171 LPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL---GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRE 247 (459)
T ss_pred CCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHH
Confidence 1 112222211 0 0113 35677777641 224899999999999885667788999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
||+++|+||+++++ ....++.++. +.+++|++++ |+++++.. +++
T Consensus 248 ~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~-~~i 302 (459)
T PRK05965 248 LGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMS-DHV 302 (459)
T ss_pred cCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEc-HHH
Confidence 99999999998843 3344555665 7777899987 78877654 444
No 34
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.88 E-value=9.8e-22 Score=179.85 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=146.9
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~ 135 (285)
|++++||.++ +.+++||+|.+|+.+++.. ...|..++...++.++|++++. .+.++|++|||+|++.|+++
T Consensus 74 G~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~Alkl 153 (442)
T TIGR03372 74 GNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKL 153 (442)
T ss_pred CCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHH
Confidence 6777777666 6688999999999988763 2233456778899999999874 35679999999999999999
Q ss_pred ccccC---CC-eEEe-cCCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 136 HCDRR---DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 136 ~~~~~---g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
+.... |+ .||. ...||+.+.....++..+.+...++. .+..+|. .|.+++++.++.. ..+++++++
T Consensus 154 Ar~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~-----~d~~~~~~~l~~~-~~~~~~vAa 227 (442)
T TIGR03372 154 AKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAF-----GDIEAMLKALNEC-KKTGDDVAA 227 (442)
T ss_pred HHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCC-----CCHHHHHHHHHHH-hcCCCcEEE
Confidence 87542 44 3443 57789887543333211122111111 1223332 2677887777531 123458999
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEee
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILA 277 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~ 277 (285)
|++|+.++..|-...|+++|++++++|++||+++|+||+++++ ....++.++. +.+++|.+++ |+|+++.
T Consensus 228 vIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~ 307 (442)
T TIGR03372 228 IILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIA 307 (442)
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEe
Confidence 9999999988555667999999999999999999999998743 2233344443 5668899986 7888775
Q ss_pred cCcccc
Q psy5413 278 GPEEFI 283 (285)
Q Consensus 278 ~~~~~i 283 (285)
+ ++++
T Consensus 308 ~-~~i~ 312 (442)
T TIGR03372 308 T-EAVF 312 (442)
T ss_pred c-HHHH
Confidence 4 5544
No 35
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.88 E-value=9.4e-22 Score=179.40 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=153.8
Q ss_pred CCeeeeeccCCcC--CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----CcEEEcCChHHHHHH
Q psy5413 65 NIRTVDIRSDTIS--KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----EAAIFVPSGTMGNLI 131 (285)
Q Consensus 65 ~~~~~~~~~~~~~--~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~~~~~~~~Gs~a~~~ 131 (285)
....++|..+++. .+++.+.+++.+.... ...|....+..+|++.+++++ |. +.+++++|+++++..
T Consensus 38 ~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~ 117 (405)
T PRK06207 38 PGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFL 117 (405)
T ss_pred CCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHH
Confidence 4567888877765 3667888888766543 245665556777888877765 53 457899999999999
Q ss_pred HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-----CCCCCCHHHHHHHhcccccccCCceE
Q psy5413 132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-----KDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
++.+++ .+||+|++..++|..... .. ...|.+++.++.+ +++.+|+++|++++++ +++
T Consensus 118 ~~~~l~-~~Gd~Vlv~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~-------~~k 180 (405)
T PRK06207 118 AVAATV-ARGDKVAIVQPDYFANRK---LV------EFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKA-------GVR 180 (405)
T ss_pred HHHHhc-CCCCEEEEeCCCchhHHH---HH------HHcCCEEEEEeccccCcccCCCcCHHHHHHhhhh-------cCe
Confidence 999887 699999998888754433 22 3447888877763 2466899999999977 689
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccC--cce
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLG--APV 272 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~--~p~ 272 (285)
+|++++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+. ...+ +++.|+||.++ |.+
T Consensus 181 ~v~l~~P~NPT-G~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlR 259 (405)
T PRK06207 181 VFLFSNPNNPA-GVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYR 259 (405)
T ss_pred EEEECCCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccc
Confidence 99999999999 999999999999999999999999999987321 111 1122 44999999987 477
Q ss_pred eEEeecCccccc
Q psy5413 273 GSILAGPEEFIQ 284 (285)
Q Consensus 273 gg~~~~~~~~i~ 284 (285)
.|++++++++++
T Consensus 260 iG~ii~~~~l~~ 271 (405)
T PRK06207 260 LGVAFGSPAIID 271 (405)
T ss_pred eEEEEcCHHHHH
Confidence 889998887764
No 36
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.88 E-value=1.8e-21 Score=177.27 Aligned_cols=202 Identities=15% Similarity=0.127 Sum_probs=153.5
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcC--------C-CcEEEcCChHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAG--------K-EAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g--------~-~~~~~~~~Gs~a~~~al 133 (285)
++.+++|..+.+.. +.+.+.+++.+.......|+ +.....+|++.++++++ . +.+++++|+++++..++
T Consensus 31 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~ 110 (399)
T PRK07681 31 GHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLP 110 (399)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHH
Confidence 45789999888765 56688888876543323333 23567889999998863 1 34678888899999999
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
.+++ ++||.|++++++|...... . ...|.+++.++.+++ +.+|++++++++.+ ++++|+++
T Consensus 111 ~~~~-~~Gd~Vlv~~P~y~~~~~~---~------~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~v~l~ 173 (399)
T PRK07681 111 MVYA-NPGDIILVPDPGYTAYETG---I------QMAGATSYYMPLKKENDFLPDLELIPEEIAD-------KAKMMILN 173 (399)
T ss_pred HHhC-CCCCEEEECCCCccchHHH---H------HhcCCEEEEEecCCCCCCcCCHHHHHHhccc-------cceEEEEe
Confidence 8887 5999999998887544332 2 345889999887543 45799999998876 78999999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cccCC--eEEEecccccCc--ceeEEee
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CASVD--TVMFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~~~d--v~~~s~sK~l~~--p~gg~~~ 277 (285)
+|+||| |.+++.+++++|+++|++||++||+||+|..+. .+ ....+ +++.|+||.++. .+.|+++
T Consensus 174 ~P~NPT-G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i 252 (399)
T PRK07681 174 FPGNPV-PAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMI 252 (399)
T ss_pred CCCCCc-CcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEe
Confidence 999999 999999999999999999999999999987221 11 11222 448999998864 6778888
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
.++++++
T Consensus 253 ~~~~l~~ 259 (399)
T PRK07681 253 GNEEIVR 259 (399)
T ss_pred cCHHHHH
Confidence 8887764
No 37
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.88 E-value=1.8e-21 Score=174.96 Aligned_cols=193 Identities=17% Similarity=0.273 Sum_probs=150.7
Q ss_pred CCcHHHHHHHHhcccC--CC-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecC
Q psy5413 78 KPTMEMKNYMFNCEVG--DD-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148 (285)
Q Consensus 78 ~~~~~v~~a~~~~~~~--~~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~ 148 (285)
...+++++++.+...+ .. ....++...++++.+++++|.+.+++++||++++..++.+++ ++|++|+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~~-~~gd~Vl~~~ 90 (361)
T cd06452 12 RLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSLC-EKGDWVVVDG 90 (361)
T ss_pred CCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHhc-CCCCEEEEcC
Confidence 3578889998876632 11 112346789999999999999888999999999999999887 6899999988
Q ss_pred CcceeeecccccccccccccccceeeeeeecCCCC--CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG--TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 149 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
..|.+.... . ...|.+++.++.++++ .+|++++++++++..+....++++|++++|+|++ |.+.+
T Consensus 91 ~~~~~~~~~---~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~t-G~~~~--- 157 (361)
T cd06452 91 LAHYTSYVA---A------ERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNY-GNLHD--- 157 (361)
T ss_pred CcchHHHHH---H------HhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCC-eeecc---
Confidence 887666432 2 3458899888876543 7899999999864211111268999999999999 89988
Q ss_pred HHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
+++|+++|+++|+++|+|++|. .......+.|+++.|+||++++ +++|+++.++++++
T Consensus 158 ~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~ 220 (361)
T cd06452 158 AKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWAD 220 (361)
T ss_pred HHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHH
Confidence 9999999999999999999988 2223334689999999999976 45778888777654
No 38
>PLN00175 aminotransferase family protein; Provisional
Probab=99.88 E-value=8.5e-22 Score=180.03 Aligned_cols=201 Identities=15% Similarity=0.102 Sum_probs=155.8
Q ss_pred CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~al~ 134 (285)
..+++|..+.+..+ .+.+.+++.+.... ...|+...+..+|++.++++++ . + .+++++|+++|+..++.
T Consensus 54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~ 133 (413)
T PLN00175 54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATIL 133 (413)
T ss_pred CCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 46799999988875 55788887766553 4567777778889999988763 2 2 36788888999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ .+||+|++++++|...... . ...|.+++.++.. +++.+|+++|++.+.+ ++++|++++|
T Consensus 134 ~l~-~~gd~Vlv~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~-------~~k~i~i~~p 196 (413)
T PLN00175 134 GLI-NPGDEVILFAPFYDSYEAT---L------SMAGAKIKTVTLRPPDFAVPEDELKAAFTS-------KTRAILINTP 196 (413)
T ss_pred HhC-CCCCEEEEeCCCchhHHHH---H------HHcCCEEEEEECCcccCCCCHHHHHHhcCc-------CceEEEecCC
Confidence 877 6999999988877544321 1 2448888888874 3467899999999977 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~ 280 (285)
+||| |.+++.+++++|+++|++||+++|+||+|..+. .+.. ...+++.|+||.++. .+.|++++++
T Consensus 197 ~NPt-G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~ 275 (413)
T PLN00175 197 HNPT-GKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPP 275 (413)
T ss_pred CCCC-CcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCH
Confidence 9999 899999999999999999999999999987221 1111 112448999999874 6778888888
Q ss_pred cccc
Q psy5413 281 EFIQ 284 (285)
Q Consensus 281 ~~i~ 284 (285)
++++
T Consensus 276 ~l~~ 279 (413)
T PLN00175 276 HLTW 279 (413)
T ss_pred HHHH
Confidence 7654
No 39
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.88 E-value=2.1e-21 Score=178.23 Aligned_cols=196 Identities=13% Similarity=0.085 Sum_probs=151.0
Q ss_pred CCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHH
Q psy5413 65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGN 129 (285)
Q Consensus 65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~ 129 (285)
++++++|..+.+. ...+++.+++.+.+.. ...|.......++++.++++++. +.+++++|+++|+
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al 130 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAI 130 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHH
Confidence 5688999998875 2466888888876543 34677666789999999999743 4468999999999
Q ss_pred HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
..++.++. .+||+|+++.++|....... ...|.+++.++. ..++.+|++++++.+++ ++++
T Consensus 131 ~l~~~~l~-~~Gd~Vlv~~P~y~~y~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~ 193 (430)
T PLN00145 131 EIIMSVLA-QPGANILLPRPGYPLYEARA---------VFSGLEVRHFDLLPERGWEVDLEGVEALADE-------NTVA 193 (430)
T ss_pred HHHHHHhc-CCCCEEEEcCCCCccHHHHH---------HHcCCEEEEeeCCcccCCcCCHHHHHHHhCc-------CceE
Confidence 99999987 69999999988765433222 233666666654 23567899999999987 7899
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h---hcccCCeE-EEecccccCc--ceeE
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E---VCASVDTV-MFCLSKGLGA--PVGS 274 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~---~~~~~dv~-~~s~sK~l~~--p~gg 274 (285)
+++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. . +.....++ +.|+||.++. .+.|
T Consensus 194 i~i~~P~NPt-G~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG 272 (430)
T PLN00145 194 MVIINPNNPC-GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLG 272 (430)
T ss_pred EEEeCCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEE
Confidence 9999999999 999999999999999999999999999987221 1 11222344 9999998555 6777
Q ss_pred Eeec
Q psy5413 275 ILAG 278 (285)
Q Consensus 275 ~~~~ 278 (285)
+++.
T Consensus 273 ~iv~ 276 (430)
T PLN00145 273 WIAT 276 (430)
T ss_pred EEEE
Confidence 7764
No 40
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.88 E-value=1.4e-21 Score=177.22 Aligned_cols=225 Identities=17% Similarity=0.144 Sum_probs=149.5
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeec----cCCcCCCcHHHHHHHHhcccCC---CCcc
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIR----SDTISKPTMEMKNYMFNCEVGD---DVYL 98 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~a~~~~~~~~---~~y~ 98 (285)
.|..+.++.+.+.|+.. |++++||. +.+.++.+|++.+++.+++... ....
T Consensus 18 ~~~~~~~~~G~~~~d~d----------------------G~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~ 75 (395)
T PRK03715 18 PDIVFTHGKGSWLYDHN----------------------GKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAF 75 (395)
T ss_pred CCceEEeeecCEEEECC----------------------CCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccc
Confidence 34556677777777643 45667765 3456778999999999876521 1111
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc-----CC-CeEE-ecCCcceeeecccccccccccccccc
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR-----RD-SEII-VGDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~-----~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
.++...+|.+.+++..+.+.++|++||++|++.|++++... ++ ++|| ....+|+.+.....++....+...+.
T Consensus 76 ~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~ 155 (395)
T PRK03715 76 YNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFA 155 (395)
T ss_pred cCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCC
Confidence 34556677777777666678899999999999999998632 23 2344 46788988754333331111111111
Q ss_pred eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-
Q psy5413 172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL- 250 (285)
Q Consensus 172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~- 250 (285)
.....++.. ...|++++++.+.+ ++++|++|++++.+|....|++++++|+++|++||+++|+||+++++
T Consensus 156 ~~~~~~~~~--~~~d~~~l~~~l~~-------~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~G 226 (395)
T PRK03715 156 PQVPGFPKA--ELNDIASVEKLITD-------KTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCG 226 (395)
T ss_pred CCCCCceee--CCchHHHHHHHcCC-------CceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 111111111 12488999999875 78999999999988444567999999999999999999999998843
Q ss_pred ----hhhcccCCeE--EEecccccCc--ceeEEeecCccc
Q psy5413 251 ----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 251 ----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
....++.++. +.+++|.+++ |.|+++.. +++
T Consensus 227 RtG~~~a~~~~gv~PDi~t~gK~lg~G~p~~av~~~-~~i 265 (395)
T PRK03715 227 RTGTLFAYELSGIEPDIMTLGKGIGGGVPLAALLAK-AEV 265 (395)
T ss_pred CCcchhhHhhcCCCCceeeehhhhhCCcceEEEEEc-ccc
Confidence 2222333333 5677899988 88877654 443
No 41
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.88 E-value=1.7e-21 Score=177.36 Aligned_cols=202 Identities=15% Similarity=0.112 Sum_probs=154.4
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----CC-----C-cEEEcCChHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----GK-----E-AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g~-----~-~~~~~~~Gs~a~~~al 133 (285)
|+++++|..+.+.. +.+.+.+++.+...+...|....+..+|++.+++++ |. + .+++++|+++++..++
T Consensus 28 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~ 107 (396)
T PRK09147 28 DLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFA 107 (396)
T ss_pred CCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHH
Confidence 67889999877765 466888888766544456765566778999998875 53 2 3577888899999999
Q ss_pred HHccccC---CCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEE
Q psy5413 134 MTHCDRR---DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 134 ~~~~~~~---g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
++++ .+ |+.|+++.+++...... . ...|.+++.+|.+++ +.+|++++++.+.+ ++++|
T Consensus 108 ~~l~-~~~~~gd~vlv~~P~y~~~~~~---~------~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~-------~~k~i 170 (396)
T PRK09147 108 QTVI-DRDGPGPLVVCPNPFYQIYEGA---A------LLAGAEPYFLNCDPANNFAPDFDAVPAEVWA-------RTQLL 170 (396)
T ss_pred HHHc-CCCCCCCEEEEcCCCccchHHH---H------HhcCCEEEEeccCccccCccCHHHHHHHHhh-------ccEEE
Confidence 9887 57 78899988876544332 2 345889999987533 46899999988866 78999
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--h-------h--c--c---cCC--eEEEecccccCc
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--E-------V--C--A---SVD--TVMFCLSKGLGA 270 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--~-------~--~--~---~~d--v~~~s~sK~l~~ 270 (285)
++++|+||| |.+++.+++++|+++|++||++||+||+|..+. . . . . ..+ +++.|+||.++.
T Consensus 171 ~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~ 249 (396)
T PRK09147 171 FVCSPGNPT-GAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNV 249 (396)
T ss_pred EEcCCCCCc-CccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCC
Confidence 999999999 999999999999999999999999999987321 0 1 0 0 112 449999996544
Q ss_pred --ceeEEeecCccccc
Q psy5413 271 --PVGSILAGPEEFIQ 284 (285)
Q Consensus 271 --p~gg~~~~~~~~i~ 284 (285)
.+.|++++++++++
T Consensus 250 ~GlRiG~~~~~~~l~~ 265 (396)
T PRK09147 250 PGLRSGFVAGDAALLK 265 (396)
T ss_pred ccceeeeecCCHHHHH
Confidence 77889999887764
No 42
>PLN02242 methionine gamma-lyase
Probab=99.88 E-value=1.4e-21 Score=178.10 Aligned_cols=193 Identities=20% Similarity=0.238 Sum_probs=145.8
Q ss_pred ccCCcCCCcHHHHHHHHhccc----CCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEE
Q psy5413 72 RSDTISKPTMEMKNYMFNCEV----GDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEII 145 (285)
Q Consensus 72 ~~~~~~~~~~~v~~a~~~~~~----~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi 145 (285)
.+..+..+.++..+++..... +...|+ .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++||+|+
T Consensus 41 ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al~-~~GD~Vl 119 (418)
T PLN02242 41 ASATFTVMEPDTMRRMFSGELGPDRDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQLC-SSGGHVV 119 (418)
T ss_pred cCCceecCCHHHHHHHhcccccccCCCccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEE
Confidence 344445567777777664432 123465 688999999999999999999999999999999999887 6999999
Q ss_pred ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413 146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~ 225 (285)
++++.|..+..... .......|.+++.++. .|+++++++|++. ++++|++++|+||+ |.+.+
T Consensus 120 ~~~~~Y~~~~~~~~----~~~~~~~G~~~~~~d~-----~d~e~l~~~i~~~------~tklV~lesp~NPt-G~v~d-- 181 (418)
T PLN02242 120 ASNTLYGGTHALLA----HFLPRKCNITTTFVDI-----TDLEAVKKAVVPG------KTKVLYFESISNPT-LTVAD-- 181 (418)
T ss_pred EcCCcHHHHHHHHH----HhhhhccCceEEEcCC-----CCHHHHHHhcCcC------CCEEEEEecCCCCC-CcccC--
Confidence 88876543322100 0000224666655544 2899999999761 48999999999999 89998
Q ss_pred HHHHHHHHHHHcCCeEEEeCccCChh--hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 226 WLRELKARCQEHNIPVHMDGARLPLA--EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea~~~~~--~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
+++|+++|++||+++|+|++|..+. ....++|+++.|++|++++ .+||++++++++++
T Consensus 182 -l~~I~~la~~~gi~livDea~~~~~~~~~~~g~divv~S~SK~l~g~g~~~gG~iv~~~~li~ 244 (418)
T PLN02242 182 -IPELARIAHEKGVTVVVDNTFAPMVLSPARLGADVVVHSISKFISGGADIIAGAVCGPAELVN 244 (418)
T ss_pred -HHHHHHHHHHhCCEEEEECCCCccCCCHHHcCCcEEEEeCccccCCCCCceEEEEEcCHHHHH
Confidence 9999999999999999999997321 1223689999999999977 45899998887654
No 43
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.88 E-value=2.1e-21 Score=176.19 Aligned_cols=202 Identities=14% Similarity=0.113 Sum_probs=154.1
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----C--C--C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----G--K--E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g--~--~-~~~~~~~Gs~a~~~a 132 (285)
++.+++|..+.+.. +++.+.+++.+.... ...|.......+|++.+++++ | . + .+++++|+++++..+
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~ 108 (388)
T PRK07366 29 GKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHL 108 (388)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHH
Confidence 56778998776665 477889998876542 235766667888999999986 3 2 3 356778889999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ .+||.|+++++++..... .. ...|.+++.++..++ +.+|++++++.+.. ++++|++
T Consensus 109 ~~~l~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~l 171 (388)
T PRK07366 109 PLAVL-NPGDFALLLDPGYPSHAG---GV------YLAGGQIYPMPLRAENDFLPVFADIPTEVLA-------QARLMVL 171 (388)
T ss_pred HHHhC-CCCCEEEEcCCCCcchHH---HH------HhcCCEEEEEECCCccCCCCCHHHHHHhhcc-------cceEEEE
Confidence 99877 599999999888754433 22 345888888887543 45788899888766 6899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhc---ccCC--eEEEecccccCc--ceeEE
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVC---ASVD--TVMFCLSKGLGA--PVGSI 275 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~---~~~d--v~~~s~sK~l~~--p~gg~ 275 (285)
++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+. ...+ +++.||||.++. .+.|+
T Consensus 172 ~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~ 250 (388)
T PRK07366 172 SYPHNPT-TAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGF 250 (388)
T ss_pred eCCCCCC-CccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhhee
Confidence 9999999 999999999999999999999999999987221 111 1123 348999999864 78889
Q ss_pred eecCccccc
Q psy5413 276 LAGPEEFIQ 284 (285)
Q Consensus 276 ~~~~~~~i~ 284 (285)
+++++++++
T Consensus 251 ~v~~~~li~ 259 (388)
T PRK07366 251 AIGNAQLIQ 259 (388)
T ss_pred hcCCHHHHH
Confidence 999888764
No 44
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.88 E-value=1.2e-21 Score=178.73 Aligned_cols=198 Identities=17% Similarity=0.165 Sum_probs=147.7
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccCCC--------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGDD--------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~~--------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|.++++-+ .+|++++++.++..... .++..+...+|++.+++++|.+..+++++|++|++.+++
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~ 123 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLA 123 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHH
Confidence 36789999877766 78999999987765311 334567789999999999998888999999999999999
Q ss_pred Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
++.. ++++.|+++..+|.+....... .+..+..++. .|++++++.++.. ...++++|+++++
T Consensus 124 ~l~~~~~~~~v~~~~~~h~s~~~~~~~---------~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~~~~v~~e~~ 186 (402)
T TIGR01821 124 TLAKIIPGCVIFSDELNHASMIEGIRH---------SGAEKFIFRH-----NDVAHLEKLLQSV---DPNRPKIIAFESV 186 (402)
T ss_pred HhhCCCCCCEEEEcchHhHHHHHHHHH---------cCCeEEEECC-----CCHHHHHHHHHhc---cCCCCeEEEEcCC
Confidence 8763 2566666666678655332212 2444444432 3788888888641 1126899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----h------hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----E------VCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+|++ |.+.| +++|+++|++||+++|+||+|+ +.. . ..+..|+++.+++|.+++ .||+++++++
T Consensus 187 ~~~~-G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~i~~~~~ 261 (402)
T TIGR01821 187 YSMD-GDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGV-VGGYIAASRK 261 (402)
T ss_pred CCCC-CCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhcc-CCceeecCHH
Confidence 9999 89999 9999999999999999999987 221 1 112357778899999987 5678888877
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 262 ~~~ 264 (402)
T TIGR01821 262 LID 264 (402)
T ss_pred HHH
Confidence 653
No 45
>PRK08068 transaminase; Reviewed
Probab=99.88 E-value=2.7e-21 Score=175.63 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=155.7
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a 132 (285)
+..+++|..+++..+ .+.+.+++.+.... ...|.+.+...+|++.+++++ |. + .+++++||++++..+
T Consensus 31 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~ 110 (389)
T PRK08068 31 GHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVEL 110 (389)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHH
Confidence 346789998887775 46788888765543 245766677889999999986 42 3 457888899999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ ++|+.|++++++|....... ...|.+++.++.++ ++.+|++++++.+.+ ++++|++
T Consensus 111 ~~~~~-~~gd~vlv~~P~y~~~~~~~---------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l 173 (389)
T PRK08068 111 PQCLM-NPGDTILVPDPGYPDYLSGV---------ALARAQFETMPLIAENNFLPDYTKIPEEVAE-------KAKLMYL 173 (389)
T ss_pred HHHhC-CCCCEEEEcCCCCcchHHHH---------HhcCCEEEEeecccccCCCCCHHHHHHhccc-------cceEEEE
Confidence 88877 58999999988876554322 24488888888753 346799999999876 7899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---cc--CCeEEEecccccCc--ceeEEe
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---AS--VDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~--~dv~~~s~sK~l~~--p~gg~~ 276 (285)
++|+||| |.+++.+++++|+++|++||+++|+||+|..+. ... .. ..+++.|+||.++. .+.|++
T Consensus 174 ~~P~NPT-G~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~ 252 (389)
T PRK08068 174 NYPNNPT-GAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFA 252 (389)
T ss_pred ECCCCCC-CCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeE
Confidence 9999999 999999999999999999999999999986211 111 11 12558999999864 677888
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 253 ~~~~~l~~ 260 (389)
T PRK08068 253 VGNESVIE 260 (389)
T ss_pred ecCHHHHH
Confidence 88887764
No 46
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.88 E-value=1.5e-21 Score=176.72 Aligned_cols=187 Identities=17% Similarity=0.137 Sum_probs=140.3
Q ss_pred cCCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413 76 ISKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153 (285)
Q Consensus 76 ~~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~ 153 (285)
+..+..+..+++.+...+...|+ .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++||+|+++++.|..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~-~~Gd~Vv~~~~~y~~ 112 (386)
T PRK06767 34 FTFETAQQGEASFAGVDPSYIYSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGFL-KAGDHIICSNGLYGC 112 (386)
T ss_pred eecCCHHHHHHhhccCcCCccccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEcCCcHHH
Confidence 34455555555443322333444 578899999999999999999999999999999988876 699999998877654
Q ss_pred eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
+....... ....+..+..++. .|++++++++++ ++++|++++|+||+ |.+.| +++|.++
T Consensus 113 ~~~~~~~~-----~~~~gi~~~~~~~-----~d~~~l~~~i~~-------~tklV~lesp~Npt-G~v~d---l~~I~~l 171 (386)
T PRK06767 113 TYGFLEVL-----EEKFMITHSFCDM-----ETEADIENKIRP-------NTKLIFVETPINPT-MKLID---LKQVIRV 171 (386)
T ss_pred HHHHHHHH-----HhhcCeEEEEeCC-----CCHHHHHHhhCc-------CceEEEEeCCCCCC-ceecC---HHHHHHH
Confidence 43211110 0223444433332 388999999977 78999999999999 99999 9999999
Q ss_pred HHHcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 234 CQEHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 234 a~~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
|+++|+++|+|+++... ..+..++|+++.|++|++++ ++||++++++++++
T Consensus 172 a~~~g~~vivD~a~a~~~~~~pl~~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i~ 228 (386)
T PRK06767 172 AKRNGLLVIVDNTFCSPYLQRPLELGCDAVVHSATKYIGGHGDVVAGVTICKTRALA 228 (386)
T ss_pred HHHcCCEEEEECCCcccccCCchhcCCcEEEecCcceecCCCCceeEEEEeChHHHH
Confidence 99999999999998721 22345789999999999987 45889988877654
No 47
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.5e-21 Score=175.02 Aligned_cols=202 Identities=20% Similarity=0.206 Sum_probs=159.5
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccC-----C-CCcc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVG-----D-DVYL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIA 132 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~-~~y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~a 132 (285)
+.++.|.+......+..|.+++.+.... + ..+. ....+++.|+.+++++|.+. ++|+.+.|+++..+
T Consensus 21 ~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~v 100 (405)
T COG0520 21 KPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLV 100 (405)
T ss_pred CCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHH
Confidence 3456666666566677999998865431 1 1121 12347899999999999763 68999999999999
Q ss_pred HHHcc--ccCCCeEEecCCcceeee-cccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 133 IMTHC--DRRDSEIIVGDCSHIMLW-EQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 133 l~~~~--~~~g~~vi~~~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
..++. .++||+||+++.-|.+.. .+..++ +..|.+++.+|.++++.+++++++..+++ +|++|.
T Consensus 101 a~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~------~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~-------~Tklva 167 (405)
T COG0520 101 ARGLGRSLKPGDEIVVSDLEHHSNIVPWQELA------KRTGAKVRVIPLDDDGLLDLDALEKLITP-------KTKLVA 167 (405)
T ss_pred HHHhhhhhcCCCEEEEccCcchhhHHHHHHHH------HhcCcEEEEEecCCCCCcCHHHHHHhcCC-------CceEEE
Confidence 99874 368999999876664332 222333 45689999999878899999999999988 899999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcc-eeEEeecCccccc
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAP-VGSILAGPEEFIQ 284 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~~i~ 284 (285)
+++++|.+ |.+.| +++|+++||++|+++++|.+|+ .+..-..++|++.+|.||||+|| -.|++..++++++
T Consensus 168 is~vSn~t-G~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~ 243 (405)
T COG0520 168 LSHVSNVT-GTVNP---VKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLE 243 (405)
T ss_pred EECccccc-cccch---HHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHh
Confidence 99999999 99999 9999999999999999999988 23333469999999999999998 4488889888775
No 48
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.87 E-value=2.1e-21 Score=175.02 Aligned_cols=185 Identities=21% Similarity=0.235 Sum_probs=143.1
Q ss_pred CCCcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceee
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML 154 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~ 154 (285)
..+..+..+++.....+...|+ .+|...+|++.+++++|.+.+++++||++|+..++.+++ ++|++|+++...|..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l~-~~gd~Vl~~~~~y~~~ 92 (369)
T cd00614 14 VFPSPAEAADLFALREGGYIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLALL-KAGDHVVASDDLYGGT 92 (369)
T ss_pred ecCCHHHHHHhhcCCcCCceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHHc-CCCCEEEECCCCcchH
Confidence 3445555555443322334454 678899999999999999999999999999999999887 6899999988776554
Q ss_pred eccc-ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 155 WEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 155 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
.... ... ...|.++..++.+ |++++++++++ ++++|++++|+||+ |.+.| +++|+++
T Consensus 93 ~~~~~~~~------~~~g~~~~~v~~~-----d~~~l~~~i~~-------~~~~v~~e~~~np~-g~~~d---l~~i~~l 150 (369)
T cd00614 93 YRLFERLL------PKLGIEVTFVDPD-----DPEALEAAIKP-------ETKLVYVESPTNPT-LKVVD---IEAIAEL 150 (369)
T ss_pred HHHHHHHH------hhcCeEEEEeCCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-CeecC---HHHHHHH
Confidence 3211 111 2457777777653 68999999976 78999999999999 99999 9999999
Q ss_pred HHHcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCc-cccc
Q psy5413 234 CQEHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPE-EFIQ 284 (285)
Q Consensus 234 a~~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~-~~i~ 284 (285)
|++||+++|+|++++.. ..+..++|+++.|++|++++ .+||++++++ ++++
T Consensus 151 a~~~g~~livD~t~~~~~~~~~~~~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~ 208 (369)
T cd00614 151 AHEHGALLVVDNTFATPYLQRPLELGADIVVHSATKYIGGHSDVIAGVVVGSGEALIQ 208 (369)
T ss_pred HHHcCCEEEEECCCcchhcCChhhhCCcEEEeccceeccCCCCceEEEEEeCcHHHHH
Confidence 99999999999998732 12334789999999999987 5688888876 6553
No 49
>PRK06062 hypothetical protein; Provisional
Probab=99.87 E-value=2e-21 Score=178.93 Aligned_cols=235 Identities=13% Similarity=0.070 Sum_probs=155.1
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChhH
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPTC 103 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~ 103 (285)
|..+.++.+.+.|+..++.+++.+..++. .+.++.||+|.+++.+++.... ....++..
T Consensus 36 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~ 97 (451)
T PRK06062 36 PMVIAGAEGSYVWDYEGRRYLDFSSQLVN------------------TNIGHQHPKVVAAIQEQAARLCTVAPAHANDAR 97 (451)
T ss_pred CceEEeceeeEEEECCCCEEEEcccCHHh------------------hcCCCCCHHHHHHHHHHHHhcCCcCCccCCHHH
Confidence 55566667777776554444444333332 2347899999999998876311 11245668
Q ss_pred HHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeeccccccccccccc----ccceeee
Q psy5413 104 KELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQ----IGRVLMR 175 (285)
Q Consensus 104 ~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~----~~g~~~~ 175 (285)
.+|.++|+++.. .++++|++|||+|++.|++++...+|+. |+. ...||+.+.....+...+.+.. ..+...+
T Consensus 98 ~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~ 177 (451)
T PRK06062 98 SEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHF 177 (451)
T ss_pred HHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEe
Confidence 899999999874 5678999999999999999988666654 443 5788987754332221111110 1122222
Q ss_pred eeecCCC--C--CCC-------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 176 GVTNQKD--G--TFD-------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 176 ~~~~~~~--~--~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
..|.... + ..| ++++++.++.. ..+++++|++|++++..|....|.++|++|+++|++||+++|+|
T Consensus 178 ~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~---~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~D 254 (451)
T PRK06062 178 FGPFLYRSEFHATTEEEECERALAHLERVIELE---GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIAD 254 (451)
T ss_pred CCCCccccccCCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEee
Confidence 2221110 0 012 67788888531 12479999999999988555678999999999999999999999
Q ss_pred CccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 245 GARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 245 ea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
|+++++ ....++.++. +.+++|.+++ |+|+++.++ +++
T Consensus 255 EV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~-~i~ 302 (451)
T PRK06062 255 EVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISE-AIA 302 (451)
T ss_pred ccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcH-HHH
Confidence 998843 2233445544 6778899987 888877664 444
No 50
>PLN02624 ornithine-delta-aminotransferase
Probab=99.87 E-value=3.4e-21 Score=178.52 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=140.9
Q ss_pred cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.|++++||.++ +.++.+|+|.+++.+++.... ....++...+|++.++++++.+.++|++||++|++.|++++
T Consensus 73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklA 152 (474)
T PLN02624 73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLA 152 (474)
T ss_pred CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHH
Confidence 46788888765 345689999999998876421 11235668999999999999888999999999999999987
Q ss_pred ccc--------CCCe-EEe-cCCcceeeeccccccccccccccccee---eeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413 137 CDR--------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRVL---MRGVTNQKDGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 137 ~~~--------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
... +++. |+. ...+|+.+.....+...+.+...++.. +..++. .|++.+++.++. +++
T Consensus 153 r~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~----~~~ 223 (474)
T PLN02624 153 RKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-----GDLDALEKIFEE----DGD 223 (474)
T ss_pred HHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-----CCHHHHHHHHHh----CCC
Confidence 641 1233 333 466787664433322111111111111 122222 278999999865 344
Q ss_pred ceEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc---ce
Q psy5413 204 STSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PV 272 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~ 272 (285)
++++|++|+++|++ |.++| .++|++|+++|++||+++|+||+|+++. ......++. +.+++|.+++ |.
T Consensus 224 ~iaaiiiEpv~~~~-G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pi 302 (474)
T PLN02624 224 RIAAFLFEPIQGEA-GVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPV 302 (474)
T ss_pred CEEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcc
Confidence 79999999999998 66655 5579999999999999999999998432 111111221 4556899887 45
Q ss_pred eEEeecCcccc
Q psy5413 273 GSILAGPEEFI 283 (285)
Q Consensus 273 gg~~~~~~~~i 283 (285)
|+ ++.+++++
T Consensus 303 ga-v~~~~~i~ 312 (474)
T PLN02624 303 SA-VLADKDVM 312 (474)
T ss_pred ee-eeecHHHH
Confidence 55 44555554
No 51
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.87 E-value=2.8e-21 Score=174.99 Aligned_cols=201 Identities=13% Similarity=0.120 Sum_probs=153.4
Q ss_pred CeeeeeccC-CcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413 66 IRTVDIRSD-TISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~ 140 (285)
.++++|..+ +...+++++.+++.+.... ...|.......++++.+++++|.+ .+++++|+++|+..++.+++ .+
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~~-~~ 106 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDEALITAGATESLYLVMRAFL-SP 106 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHhc-CC
Confidence 467888744 4445788999998877653 234655556899999999999864 46999999999999999877 58
Q ss_pred CCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413 141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217 (285)
Q Consensus 141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~ 217 (285)
|++|++++++|..... .. ...|.+++.++... ++.+|++++++.+++ ++++|++++|+||+
T Consensus 107 gd~vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~Npt 170 (380)
T PRK06225 107 GDNAVTPDPGYLIIDN---FA------SRFGAEVIEVPIYSEECNYKLTPELVKENMDE-------NTRLIYLIDPLNPL 170 (380)
T ss_pred CCEEEEcCCCCcchHH---HH------HHhCceEEeeccccccCCccCCHHHHHhhcCC-------CceEEEEeCCCCCC
Confidence 9999988876643322 11 24478888877522 356899999999977 78999999999999
Q ss_pred CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-------hhhcccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413 218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-------AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-------~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|.+++.+++++|+++|++||+++|+||+|..+ ........+++.|+||+++. .+.|++++++++++
T Consensus 171 -G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~ 245 (380)
T PRK06225 171 -GSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIE 245 (380)
T ss_pred -CcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHH
Confidence 89999999999999999999999999997521 11112233558899999974 56678888877664
No 52
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.87 E-value=2.5e-21 Score=176.53 Aligned_cols=205 Identities=19% Similarity=0.154 Sum_probs=141.2
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++ +.++.+|++.+++.+++.... .+...+...++++.++++.+.+.+++++||++|++.|++++.
T Consensus 40 g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~ 119 (401)
T PRK00854 40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVR 119 (401)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 4556666554 235579999999998876321 112356789999999999998889999999999999999985
Q ss_pred cc--------CC-CeEE-ecCCcceeeeccccccccccccc---ccceeeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413 138 DR--------RD-SEII-VGDCSHIMLWEQGGASQTSVYSQ---IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS 204 (285)
Q Consensus 138 ~~--------~g-~~vi-~~~~~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 204 (285)
.. +| ++|+ ..+.+|+.+.....+..++.+.. .....+..++. .|++++++.|.+ +
T Consensus 120 ~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~~-------~ 187 (401)
T PRK00854 120 KWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAITP-------N 187 (401)
T ss_pred HHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhCC-------C
Confidence 31 23 3444 46778887643322221111111 11122233332 389999999976 7
Q ss_pred eEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChhhh-----c----ccCCeEEEecccccCc--ce
Q psy5413 205 TSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLAEV-----C----ASVDTVMFCLSKGLGA--PV 272 (285)
Q Consensus 205 ~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~~~-----~----~~~dv~~~s~sK~l~~--p~ 272 (285)
+++|++++++|++ |.+.| .+++++|+++|++||+++|+||+|+++... . -..|++++ +|++++ ..
T Consensus 188 ~~aii~e~~~~~~-G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~ 264 (401)
T PRK00854 188 TVAFLVEPIQGEA-GVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYP 264 (401)
T ss_pred eEEEEEccccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEe--cccccCCccC
Confidence 9999999999999 66665 678999999999999999999998843211 1 13465554 699987 23
Q ss_pred eEEeecCccccc
Q psy5413 273 GSILAGPEEFIQ 284 (285)
Q Consensus 273 gg~~~~~~~~i~ 284 (285)
+|++++++++++
T Consensus 265 ig~v~~~~~~~~ 276 (401)
T PRK00854 265 VSAVLSNSEVLG 276 (401)
T ss_pred eEEEEEcHHHHh
Confidence 556777776654
No 53
>PRK12403 putative aminotransferase; Provisional
Probab=99.87 E-value=2.6e-21 Score=178.58 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=153.2
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----Cc-cCC
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VY-LED 100 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y-~~~ 100 (285)
.|..+.++.+.+.|+..++.+++.+..|+. .+.++.||+|.+|+.+++.... .+ ..+
T Consensus 36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~ 97 (460)
T PRK12403 36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWC------------------TNLGYGRKDLAAAAARQMEQLPYYNMFFHTTH 97 (460)
T ss_pred CCceEEeceeeEEEeCCCCEEEECchhHHh------------------hcCCCCCHHHHHHHHHHHHhCCCeecccccCC
Confidence 356677778888887655555444444333 2357899999999998876411 22 246
Q ss_pred hhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCeEEe--cCCcceeeeccccccccccccccc
Q psy5413 101 PTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSEIIV--GDCSHIMLWEQGGASQTSVYSQIG 170 (285)
Q Consensus 101 ~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~vi~--~~~~h~~~~~~~~~~~~~~~~~~~ 170 (285)
+...+|+++|+++++ .+.++|++|||+|+++|++++... +++.+|+ ...||+.+.....++....+....
T Consensus 98 ~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~ 177 (460)
T PRK12403 98 PAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMG 177 (460)
T ss_pred HHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccC
Confidence 778999999999986 567899999999999999998632 2233443 467898865433332111111100
Q ss_pred --ceeeeeeecCCCC----C--------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 171 --RVLMRGVTNQKDG----T--------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 171 --g~~~~~~~~~~~~----~--------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
-..+..+|.+..+ . .+++++++.+.+. +.+++++|++|++++..|....|.+++++|+++|++
T Consensus 178 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~---~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~ 254 (460)
T PRK12403 178 GLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL---GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQ 254 (460)
T ss_pred CCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHh---CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 0112222221100 0 1135566655321 234799999999999874456778999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
||+++|+||+++++ ....++.++. +.+++|++++ |+|+++++ ++++
T Consensus 255 ~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~-~~i~ 310 (460)
T PRK12403 255 YDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLS-KRIA 310 (460)
T ss_pred cCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEEC-HHHH
Confidence 99999999998843 2333444444 4568899985 88888855 4443
No 54
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.87 E-value=2.6e-21 Score=175.29 Aligned_cols=202 Identities=13% Similarity=0.123 Sum_probs=152.8
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~a 132 (285)
++.+++|..+.+.. +.+.+.+++.+.... ...|.......+|++.++++++ . + .+++++|+++++..+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~ 107 (383)
T TIGR03540 28 GVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHI 107 (383)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHH
Confidence 46778999887776 466788887765432 2456655567889999998753 2 2 356778889999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ ++||.|++++++|...... . ...|.+++.++..++ ..+|++++++++.+ ++++|++
T Consensus 108 ~~~~~-~~gd~vlv~~P~y~~~~~~---~------~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~-------~~~~v~i 170 (383)
T TIGR03540 108 PLAFV-NPGDIVLVPDPGYPVYRIG---T------LFAGGEPYEMPLKEENGFLPDFDAIPEDIAK-------KAKLMFI 170 (383)
T ss_pred HHHhC-CCCCEEEEeCCCCcchHHH---H------HhcCCEEEEEecCcccCCccCHHHHHhhccc-------cceEEEE
Confidence 99887 5899999988876544332 1 345888888887533 45799999998876 7899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cc--cCCeEEEecccccCc--ceeEEe
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CA--SVDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~--~~dv~~~s~sK~l~~--p~gg~~ 276 (285)
++|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+ .. ...+++.|+||.+|. .+.|++
T Consensus 171 ~~P~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~ 249 (383)
T TIGR03540 171 NYPNNPT-GAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMA 249 (383)
T ss_pred eCCCCCc-CccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEE
Confidence 9999999 999999999999999999999999999986211 11 11 122448999999864 567888
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 250 i~~~~l~~ 257 (383)
T TIGR03540 250 VGNADLIA 257 (383)
T ss_pred eCCHHHHH
Confidence 88887764
No 55
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.87 E-value=2.3e-21 Score=176.27 Aligned_cols=202 Identities=12% Similarity=0.113 Sum_probs=152.2
Q ss_pred CCeeeeeccCCcCCCcH-HHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----C----CCc-EEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKPTM-EMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----G----KEA-AIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g----~~~-~~~~~~Gs~a~~~a 132 (285)
|+.+++|..+++..+.| .+.+++.+.... ...|....+..+|++.+++++ | .+. +++++|+++|+..+
T Consensus 34 g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~ 113 (394)
T PRK05942 34 GLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHL 113 (394)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHH
Confidence 45689999988877544 577776554432 245765556788999999986 3 232 56788889999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ .+||+|++++++|....... ...|.+++.++.+. ++.+|++++++.+++ ++++|++
T Consensus 114 ~~~~~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~l 176 (394)
T PRK05942 114 ALAYV-NPGDVVLVPSPAYPAHFRGP---------LIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-------QAKILYF 176 (394)
T ss_pred HHHhC-CCCCEEEEcCCCCcchHHHH---------HHcCCEEEEeecCCccCCccCHHHHHHhccc-------cceEEEE
Confidence 98877 69999999988875443211 23488888888753 346899999999876 7899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--cCCeEEEecccccCc--ceeEEe
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--SVDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--~~dv~~~s~sK~l~~--p~gg~~ 276 (285)
++|+||| |.+++.+++++|+++|++||+++|+||+|..+ ..... ...+++.|+||.++. .+.|++
T Consensus 177 ~~P~NPt-G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i 255 (394)
T PRK05942 177 NYPSNPT-TATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFV 255 (394)
T ss_pred cCCCCCC-CCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeee
Confidence 9999999 99999999999999999999999999997611 11111 123458999998754 567888
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 256 ~~~~~l~~ 263 (394)
T PRK05942 256 VGNRHIIQ 263 (394)
T ss_pred ecCHHHHH
Confidence 88887764
No 56
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.87 E-value=1.9e-21 Score=178.32 Aligned_cols=231 Identities=15% Similarity=0.169 Sum_probs=153.1
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC--CC--c
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--DV--Y 97 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~~--y 97 (285)
.|..+.++.+.+.|+.. |++++||.++ +.++.+|++.+|+.+++... .. .
T Consensus 24 ~p~~~~~~~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~ 81 (423)
T PRK05964 24 PPIPIVRAEGAYLYLAD----------------------GRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAG 81 (423)
T ss_pred CCeeEEeccccEEEeCC----------------------CCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccc
Confidence 35566677777777754 4555666544 55789999999999887631 11 1
Q ss_pred cCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccc
Q psy5413 98 LEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYS 167 (285)
Q Consensus 98 ~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~ 167 (285)
..++...+|.++|++... .+.++|++|||+|++.|++++... +|+ +|+ ....||+.+.....+.....+.
T Consensus 82 ~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~ 161 (423)
T PRK05964 82 FTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMH 161 (423)
T ss_pred cCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCcccc
Confidence 245668889999999873 567899999999999999998643 344 344 3678888764433322112222
Q ss_pred ccc-----ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413 168 QIG-----RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPV 241 (285)
Q Consensus 168 ~~~-----g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~l 241 (285)
..+ +...+.++..+....+++++++.+.+ +.+++++|++|+ +++.+|..+.|.+++++|+++|++||+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~----~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~ll 237 (423)
T PRK05964 162 ALYTPLLFEQVTAPFPPDGYEQATLDALEALLEK----HAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLL 237 (423)
T ss_pred ccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHh----CCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 111 22222222211111237888888865 334899999999 68887556678999999999999999999
Q ss_pred EEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
|+||+++++. ...+..++. +.+++|++++ |.|+ ++++++++
T Consensus 238 I~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~a-v~~~~~i~ 288 (423)
T PRK05964 238 IFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAA-TLCTAEIF 288 (423)
T ss_pred EEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceE-EEEcHHHH
Confidence 9999988442 122222322 4677899966 6665 55666654
No 57
>PLN02656 tyrosine transaminase
Probab=99.87 E-value=2.6e-21 Score=176.77 Aligned_cols=197 Identities=16% Similarity=0.113 Sum_probs=152.9
Q ss_pred cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHH
Q psy5413 64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMG 128 (285)
Q Consensus 64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a 128 (285)
.|+.+++|..+++. .+++.+.+++.+.... ...|++.....++++.++++++. +.+++++|+++|
T Consensus 29 ~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 108 (409)
T PLN02656 29 NGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQA 108 (409)
T ss_pred cCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHH
Confidence 46789999999986 4577899988876553 24677677788999999998742 456899999999
Q ss_pred HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceE
Q psy5413 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 129 ~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
+..++.+++ ++||+|++++++|..... .. ...|.+++.++..+ ++.+|++++++++++ +++
T Consensus 109 l~~~~~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-------~~~ 171 (409)
T PLN02656 109 IDVALSMLA-RPGANILLPRPGFPIYEL---CA------AFRHLEVRYVDLLPEKGWEVDLDAVEALADQ-------NTV 171 (409)
T ss_pred HHHHHHHHh-CCCCeEEEeCCCCCcHHH---HH------HHcCCEEEEEeCCCcCCCCCCHHHHHHHhcc-------Cce
Confidence 999999877 699999999888754322 11 23477888887642 356899999999877 789
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------h---hcccCCeE-EEecccccCc--cee
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------E---VCASVDTV-MFCLSKGLGA--PVG 273 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~---~~~~~dv~-~~s~sK~l~~--p~g 273 (285)
+|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. . +.....++ +.||||.++. .+.
T Consensus 172 ~v~l~~P~NPt-G~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRi 250 (409)
T PLN02656 172 ALVIINPGNPC-GNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRL 250 (409)
T ss_pred EEEEECCCCCC-CCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeE
Confidence 99999999999 999999999999999999999999999987221 1 11112244 8999998555 677
Q ss_pred EEeec
Q psy5413 274 SILAG 278 (285)
Q Consensus 274 g~~~~ 278 (285)
|++++
T Consensus 251 G~~i~ 255 (409)
T PLN02656 251 GWFVT 255 (409)
T ss_pred EEEEE
Confidence 78876
No 58
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.87 E-value=1.8e-21 Score=179.17 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=143.7
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++ +.++.+|+|.+++.+++... .....++...+|.++|++..+. +.++|++|||+|++.|++
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlK 132 (453)
T PRK06943 53 GRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALK 132 (453)
T ss_pred CCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHH
Confidence 4556666544 45789999999999887631 1122466788999999998763 578999999999999999
Q ss_pred Hcccc------CCC-eEEe-cCCcceeeecccccccccccccccce---eeeeeecCCC-C-----------CCCHHHHH
Q psy5413 135 THCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKD-G-----------TFDLDEME 191 (285)
Q Consensus 135 ~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~-~-----------~~d~~~l~ 191 (285)
++.+. +++ +|+. ...||+.+.....+.....|...++. .+..++.+.. + ..++++++
T Consensus 133 lA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~ 212 (453)
T PRK06943 133 MSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVR 212 (453)
T ss_pred HHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHH
Confidence 98431 233 3443 67889876433322211222222221 1112222110 0 02357777
Q ss_pred HHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEe
Q psy5413 192 AKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFC 263 (285)
Q Consensus 192 ~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s 263 (285)
+.++. +.+++++|++|+ +++..|..+.|.+++++|+++|++||+++|+||+++++ ....+++++. +.+
T Consensus 213 ~~l~~----~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt 288 (453)
T PRK06943 213 RLFAE----RAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLC 288 (453)
T ss_pred HHHHh----CCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEe
Confidence 77764 345899999999 59888666788999999999999999999999998844 3333555555 677
Q ss_pred cccccCc---ceeEEeecCcccc
Q psy5413 264 LSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 264 ~sK~l~~---p~gg~~~~~~~~i 283 (285)
++|++++ |+++++.. ++++
T Consensus 289 ~gKgl~gG~~Pi~av~~~-~ei~ 310 (453)
T PRK06943 289 LSKGISGGYLPLSLVLSR-DAIF 310 (453)
T ss_pred eehhhccCcccceEEEEc-HHHH
Confidence 7899876 77776654 4443
No 59
>PLN00144 acetylornithine transaminase
Probab=99.87 E-value=2e-21 Score=175.62 Aligned_cols=208 Identities=16% Similarity=0.118 Sum_probs=140.8
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++ +.++.+|++.+++.+++... ..+..++...++.+.|++..+.+.++|++|||+|++.|++++.
T Consensus 14 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr 93 (382)
T PLN00144 14 GKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFAR 93 (382)
T ss_pred CCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHH
Confidence 5566666544 45779999999999887631 1112356688999999988777788999999999999999986
Q ss_pred ccCC--------------CeEE-ecCCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhccccc
Q psy5413 138 DRRD--------------SEII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADN 199 (285)
Q Consensus 138 ~~~g--------------~~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~ 199 (285)
...+ .+|+ +...||+.+.....+.....+...+.. .+..++. .|++++++.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~-- 166 (382)
T PLN00144 94 KYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEY-----GNLEAARKLIQKG-- 166 (382)
T ss_pred HHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCC-----CCHHHHHHhcCCC--
Confidence 4322 2344 367889887543333211112111111 1122222 2789999888542
Q ss_pred ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc--
Q psy5413 200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA-- 270 (285)
Q Consensus 200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~-- 270 (285)
++++|++|+.+|++|....+.+++++|+++|++||+++|+||+++++ ....+..++. +.+++|++++
T Consensus 167 ----~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G~ 242 (382)
T PLN00144 167 ----KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGL 242 (382)
T ss_pred ----CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCCc
Confidence 78999999999996444457889999999999999999999998843 2221222222 7888899986
Q ss_pred ceeEEeecCccccc
Q psy5413 271 PVGSILAGPEEFIQ 284 (285)
Q Consensus 271 p~gg~~~~~~~~i~ 284 (285)
|+|+ ++.++++++
T Consensus 243 pig~-v~~~~~~~~ 255 (382)
T PLN00144 243 PIGA-VLVTEKVAS 255 (382)
T ss_pred ceEE-EEEcHHHHh
Confidence 6555 555555543
No 60
>PLN02822 serine palmitoyltransferase
Probab=99.87 E-value=1.5e-21 Score=181.03 Aligned_cols=201 Identities=14% Similarity=0.171 Sum_probs=152.3
Q ss_pred cCCeeeeeccCCcCC--CcHHHHHHHHhcccC--C--C----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413 64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D--D----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~--~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al 133 (285)
.|++++||.++++.+ .+|++.+++.+++.. . . .|++.+.+.+|++.|+++++.+..++.++|..++..++
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~a~~sai 186 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVI 186 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHHHHHHHH
Confidence 478999999876644 688999998877753 1 1 46677889999999999999877766667777899999
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccccccc--CCce-EEEEE
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIH--CAST-SLVCV 210 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~--~~~~-~~v~i 210 (285)
.+++ ++||.|+++..+|.++.....++ +.+++.++.+ |.++++..+++..+.. .+++ ++|++
T Consensus 187 ~a~~-~~gd~Ii~d~~~H~s~~~~~~ls---------~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivv 251 (481)
T PLN02822 187 PAFC-KKGDIIVADEGVHWGIQNGLYLS---------RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVV 251 (481)
T ss_pred HHhC-CCCCEEEEeCCccHHHHHHHHHc---------CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEE
Confidence 9877 68999998888997765433344 6677777653 5566666554321110 1234 89999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----hc-------ccCCeEEEecccccCcceeEEee
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----VC-------ASVDTVMFCLSKGLGAPVGSILA 277 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----~~-------~~~dv~~~s~sK~l~~p~gg~~~ 277 (285)
+++++++ |.+.| +++|+++|++||+++|+||+|+ +..+ +. ...|+++.|++|.++. .||+++
T Consensus 252 e~i~~~~-G~i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~-~GG~i~ 326 (481)
T PLN02822 252 EAIYQNS-GQIAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALAT-EGGFCT 326 (481)
T ss_pred ecCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhh-CCeEEE
Confidence 9999998 99999 9999999999999999999988 1111 11 2457889999999985 678999
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
+++++++
T Consensus 327 g~~~ii~ 333 (481)
T PLN02822 327 GSARVVD 333 (481)
T ss_pred cCHHHHH
Confidence 9888765
No 61
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.87 E-value=3.7e-21 Score=172.30 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=152.1
Q ss_pred eeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHHHHHcc
Q psy5413 68 TVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 68 ~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~al~~~~ 137 (285)
+++|..+++..+ .+++.+++.+.......|.......+|++.+++++ | .+ .+++++|+++++..++.+++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~ 81 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI 81 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc
Confidence 467888777765 67899998876544445765556788999999886 4 23 56888888999999988877
Q ss_pred ccCC---CeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 138 DRRD---SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 138 ~~~g---~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
.+| |+|+++.++|....... ...|.+++.++.++ ++.+|++++++++.+ ++++|++++
T Consensus 82 -~~g~~~d~Vl~~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~~~i~i~~ 144 (350)
T TIGR03537 82 -DPEEDRRRVIFGTPGYPVYERGA---------LFAGGEPTAVKLKKEDGFLLRLEKVEKSILE-------ETKIVWINY 144 (350)
T ss_pred -CCCCCCceEEEcCCCCcchHHHH---------HhcCCEEEEcccCcccCCccCHHHHHHhhhh-------ccEEEEEeC
Confidence 466 68999988876554322 34588999888752 345899999999977 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcccCC--eEEEecccccCc--ceeEEeecCcc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCASVD--TVMFCLSKGLGA--PVGSILAGPEE 281 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~ 281 (285)
|+||| |.+++.+++++|+++|++||+++|+||+|..+. . .....+ +++.|+||.++. .+.|+++.+++
T Consensus 145 p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~ 223 (350)
T TIGR03537 145 PHNPT-GATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEK 223 (350)
T ss_pred CCCCc-CcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHH
Confidence 99999 999999999999999999999999999986221 0 111223 448899998864 67788888776
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 224 ~~~ 226 (350)
T TIGR03537 224 LIS 226 (350)
T ss_pred HHH
Confidence 654
No 62
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.87 E-value=3.6e-21 Score=175.49 Aligned_cols=207 Identities=16% Similarity=0.135 Sum_probs=140.3
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++ +.++.+|++.+++.+++... ......+...++++.|+++.+.++++|++||++|++.|++++.
T Consensus 39 G~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar 118 (403)
T PRK05093 39 GKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLAR 118 (403)
T ss_pred CCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHH
Confidence 5677888764 66789999999998877531 1112345578999999999888889999999999999999874
Q ss_pred cc------CCC-eEE-ecCCcceeeeccccccccccccccc---ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413 138 DR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIG---RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 138 ~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
.. .++ .++ +...+|+.+.....+...+.+...+ ...++.++. .|++++++.+.+ +++
T Consensus 119 ~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-------~~a 186 (403)
T PRK05093 119 RYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-----NDLAAVKAVIDD-------HTC 186 (403)
T ss_pred HHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-----CCHHHHHHHhcC-------CeE
Confidence 32 123 333 4678898875322221111111111 112223322 389999999976 799
Q ss_pred EEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEecccccCc-ceeEEee
Q psy5413 207 LVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA-PVGSILA 277 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~-p~gg~~~ 277 (285)
+|++|++++.+ |.. .+.+++++|+++|++||+++|+||+|+++.. .....++. +.++||.+++ .+.|+++
T Consensus 187 aiiiep~~~~g-g~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~vv 265 (403)
T PRK05093 187 AVVVEPIQGEG-GVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPIGAML 265 (403)
T ss_pred EEEEecccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCCcceEEEE
Confidence 99999766654 654 5889999999999999999999999884321 11122222 6788999976 3445555
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
.++++++
T Consensus 266 ~~~~i~~ 272 (403)
T PRK05093 266 TTAEIAS 272 (403)
T ss_pred EcHHHHh
Confidence 6666543
No 63
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.87 E-value=2.4e-21 Score=178.79 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=152.8
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++....|+. .+.++.+|+|.+|+.+++... .....++.
T Consensus 39 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~ 100 (460)
T PRK06916 39 PLIIERGEGRKLYDVNGNEYYDGVSSIWL------------------NVHGHQVPELDEAIREQLNKIAHSTLLGLANVP 100 (460)
T ss_pred CeeEEeccccEEEeCCCCEEEEcchhHHH------------------hhcCCCCHHHHHHHHHHHHhCCCccccccCCHH
Confidence 45556666666666544444443333332 134789999999999887641 11224667
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccc------cCCC-eEE-ecCCcceeeecccccccccccccccce
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCD------RRDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~------~~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..+|.++|++++. .+.++|++|||+|++.|++++.. .+|+ +|+ ....||+.+.....++....+...++.
T Consensus 101 ~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~ 180 (460)
T PRK06916 101 SILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSS 180 (460)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCC
Confidence 8899999999874 36789999999999999999874 2344 344 367889877543333211222222211
Q ss_pred ---eeeeeecCC------CC------CCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 173 ---LMRGVTNQK------DG------TFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 173 ---~~~~~~~~~------~~------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
.+..+|.+. .. ..+++++++.++. +++++++|++|+ +++..|..+.|++++++|+++|++
T Consensus 181 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~ 256 (460)
T PRK06916 181 LLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKE----KHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTK 256 (460)
T ss_pred CCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHh----CCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHH
Confidence 112222211 00 0245677777764 445899999999 698875566789999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
||+++|+||+++++ ....++.++. +.+++|.+++ |+++++.. ++++
T Consensus 257 ~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~-~ei~ 312 (460)
T PRK06916 257 YNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTT-DEIY 312 (460)
T ss_pred cCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeec-HHHH
Confidence 99999999998843 2233445544 6677899876 77776654 4443
No 64
>PRK07483 hypothetical protein; Provisional
Probab=99.87 E-value=4e-21 Score=176.49 Aligned_cols=233 Identities=14% Similarity=0.105 Sum_probs=155.1
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~ 101 (285)
.|..+.++.+.++|+..++.+++.++.|+.. +.++.+|+|.+++.+++... ..+..++
T Consensus 12 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~ 73 (443)
T PRK07483 12 TLPVAVAGEGIYLIDATGKRYLDASGGAAVS------------------CLGHSHPRVIAAIHAQIDRLAYAHTSFFTTE 73 (443)
T ss_pred CCceEEeceEEEEEeCCCCEEEEcCccHhhh------------------ccCCCCHHHHHHHHHHHHhccCccccccCCH
Confidence 3777888899999987655555555444432 34789999999999887632 1222466
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...+|.++|+++.. .+.++|++|||+|++.|++++... +++ +|+. ...||+.+.....++....+...++
T Consensus 74 ~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~ 153 (443)
T PRK07483 74 PAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFA 153 (443)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccC
Confidence 78899999999863 567899999999999999998743 343 3444 6788988754333321122222111
Q ss_pred e---eeeeeecCCCCC-C------------CHHHHHHHhcccccccCCceEEEEEecccCC-CCeeeCCHHHHHHHHHHH
Q psy5413 172 V---LMRGVTNQKDGT-F------------DLDEMEAKFSTADNIHCASTSLVCVENTHNY-CGGTVLPMQWLRELKARC 234 (285)
Q Consensus 172 ~---~~~~~~~~~~~~-~------------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~-~gG~~~~~~~l~~i~~la 234 (285)
. .+..++....+. . .++++++++.. .+.+++++|++|++++. .|....|++++++|+++|
T Consensus 154 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc 230 (443)
T PRK07483 154 PLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILE---LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVC 230 (443)
T ss_pred CCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHh---cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHH
Confidence 1 112222211111 0 13566666642 13348999999999974 444667789999999999
Q ss_pred HHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 235 QEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 235 ~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
++||+++|+||+++++ ....++.++. +.+++|.+++ |+++++.++
T Consensus 231 ~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ 285 (443)
T PRK07483 231 DRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASD 285 (443)
T ss_pred HHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcH
Confidence 9999999999998844 3344455555 6777899986 777766653
No 65
>PRK12414 putative aminotransferase; Provisional
Probab=99.87 E-value=3.6e-21 Score=174.48 Aligned_cols=201 Identities=15% Similarity=0.133 Sum_probs=151.9
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCC-----CcEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGK-----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~-----~~~~~~~~Gs~a~~~al~ 134 (285)
..+++|..+.+.. +.+.+.+++.+.... ...|++.....+|++.++++ +|. +.+++++||++++..++.
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~ 108 (384)
T PRK12414 29 HDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAIS 108 (384)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHH
Confidence 3568888777665 467888888765442 35676666667777777765 464 247899999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ .+||+|++++++|...... . ...|.+++.++.++ ++.+|++++++++++ ++++|++++|
T Consensus 109 ~l~-~~gd~Vlv~~p~y~~~~~~---~------~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-------~~~~v~i~~p 171 (384)
T PRK12414 109 ALV-HPGDEVIYFEPSFDSYAPI---V------RLQGATPVAIKLSPEDFRVNWDEVAAAITP-------RTRMIIVNTP 171 (384)
T ss_pred Hhc-CCCCEEEEeCCCccchHHH---H------HHcCCEEEEEecCccccccCHHHHHhhcCc-------ccEEEEEcCC
Confidence 887 6999999988887544321 1 23478888888753 456899999999976 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccCc--ceeEEeecC
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~~--p~gg~~~~~ 279 (285)
+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. ...+ +++.|+||.++. .+.|+++++
T Consensus 172 ~NPT-G~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~ 250 (384)
T PRK12414 172 HNPS-ATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAP 250 (384)
T ss_pred CCCC-CcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecC
Confidence 9999 999999999999999999999999999987211 111 1122 459999998863 677888888
Q ss_pred ccccc
Q psy5413 280 EEFIQ 284 (285)
Q Consensus 280 ~~~i~ 284 (285)
+++++
T Consensus 251 ~~l~~ 255 (384)
T PRK12414 251 AELMD 255 (384)
T ss_pred HHHHH
Confidence 87654
No 66
>PRK07046 aminotransferase; Validated
Probab=99.87 E-value=2.9e-21 Score=177.62 Aligned_cols=208 Identities=13% Similarity=0.038 Sum_probs=145.3
Q ss_pred cCCeeeeeccC----CcCCCcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc
Q psy5413 64 VNIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD 138 (285)
Q Consensus 64 ~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~ 138 (285)
+|++++||.++ ..++.+|+|.+++.+++.... ....++...++.+.|++.++.+.+.|++|||+|++.|++++..
T Consensus 73 DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~ 152 (453)
T PRK07046 73 DGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARA 152 (453)
T ss_pred CCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHH
Confidence 36777777544 357799999999998876422 2235677889999999998888899999999999999999987
Q ss_pred cCCCeEEe--cCCcceeeeccccc-cc-cccccc-ccce------eeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 139 RRDSEIIV--GDCSHIMLWEQGGA-SQ-TSVYSQ-IGRV------LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 139 ~~g~~vi~--~~~~h~~~~~~~~~-~~-~~~~~~-~~g~------~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
.+|+..|+ ...||+.+...... .. ...+.. ..+. .+..++. .|++.+++.+.. +++++
T Consensus 153 ~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~l~~------~~vAa 221 (453)
T PRK07046 153 VTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAALAD------GDVAA 221 (453)
T ss_pred hhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHHhCC------CCeEE
Confidence 67765333 56788864321110 00 000000 0011 1112221 389999998853 27999
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---ChhhhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PLAEVCASVDTV--MFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~ 280 (285)
|++|+.++..|....++++|++++++|++||+++|+||+++ ++....+..++. +.+++|.+++ |.|++ ++++
T Consensus 222 vi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~~~~gv~PDi~t~gK~lggG~Pi~av-~g~~ 300 (453)
T PRK07046 222 VLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYTRAHGLEPDFLVVGKPIAGGVPCAVY-GFSA 300 (453)
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchhHHhCCCccceeehhhhcCCCcceee-eehH
Confidence 99999998875666778999999999999999999999986 444444444444 5677899987 87654 4555
Q ss_pred ccc
Q psy5413 281 EFI 283 (285)
Q Consensus 281 ~~i 283 (285)
+++
T Consensus 301 ~i~ 303 (453)
T PRK07046 301 ELA 303 (453)
T ss_pred HHH
Confidence 554
No 67
>PLN02187 rooty/superroot1
Probab=99.87 E-value=9.3e-21 Score=175.25 Aligned_cols=196 Identities=16% Similarity=0.138 Sum_probs=151.6
Q ss_pred CCeeeeeccCCcCC-----CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHH
Q psy5413 65 NIRTVDIRSDTISK-----PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGN 129 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~ 129 (285)
++.+++|..+.+.. +.+++.+++.+.... ...|++.....++++.++++++ .+.+++++|+++|+
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al 144 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGI 144 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHH
Confidence 57899999987762 345788887765543 2467777778899999999873 23468899999999
Q ss_pred HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
..++.+++ ++||+|++++++|...... . ...|.+++.++.. .++.+|++++++++++ ++++
T Consensus 145 ~~~~~~l~-~pGd~Vlv~~P~y~~y~~~---~------~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~-------~~~~ 207 (462)
T PLN02187 145 EIVFESLA-RPNANILLPRPGFPHYDAR---A------AYSGLEVRKFDLLPEKEWEIDLEGIEAIADE-------NTVA 207 (462)
T ss_pred HHHHHHhc-CCCCEEEEeCCCCccHHHH---H------HHcCCEEEEEeCccccCCccCHHHHHHhcCC-------CcEE
Confidence 99999987 6999999998887544321 2 2347788877753 3567899999999876 7899
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeE
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGS 274 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg 274 (285)
|++++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+.....++ +.|+||.++. .+.|
T Consensus 208 v~i~nP~NPT-G~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG 286 (462)
T PLN02187 208 MVVINPNNPC-GNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIG 286 (462)
T ss_pred EEEeCCCCCC-CCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeE
Confidence 9999999999 999999999999999999999999999987321 111122244 8999998665 6777
Q ss_pred Eeec
Q psy5413 275 ILAG 278 (285)
Q Consensus 275 ~~~~ 278 (285)
++++
T Consensus 287 ~~v~ 290 (462)
T PLN02187 287 WIAL 290 (462)
T ss_pred EEEe
Confidence 7775
No 68
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.87 E-value=4.6e-21 Score=173.84 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=152.0
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a 132 (285)
+..+++|..+.+.. +.+.+.+++.+.... ...|.......+|++.+++++ |. + .+++++|+++++..+
T Consensus 30 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~ 109 (385)
T PRK09276 30 GVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHI 109 (385)
T ss_pred CCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence 45678998877665 566888888765532 245665555788999999987 32 2 256678888999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ ++||+|+++++++...... . ...|.+++.++..+ ++.+|++++++.+.+ ++++|++
T Consensus 110 ~~~~~-~~gd~Vl~~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~-------~~~~v~l 172 (385)
T PRK09276 110 PLAFV-NPGDVVLVPDPGYPVYKIG---T------IFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-------KAKLMFI 172 (385)
T ss_pred HHHhC-CCCCEEEEcCCCCcChHHH---H------HHcCCEEEEEecCCCCCCcCCHHHHHHhccc-------cceEEEE
Confidence 99887 6999999998876543321 2 34588888888743 345799999988876 7899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---c--cCCeEEEecccccCc--ceeEEe
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---A--SVDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~--~~dv~~~s~sK~l~~--p~gg~~ 276 (285)
++|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. . ...+++.|+||.++. .+.|++
T Consensus 173 ~~p~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~ 251 (385)
T PRK09276 173 NYPNNPT-GAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFA 251 (385)
T ss_pred eCCCCCC-CCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheee
Confidence 9999999 999999999999999999999999999987221 111 1 112458999999865 567888
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 252 i~~~~l~~ 259 (385)
T PRK09276 252 VGNADLIA 259 (385)
T ss_pred eCCHHHHH
Confidence 88887764
No 69
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.87 E-value=2.2e-21 Score=177.35 Aligned_cols=198 Identities=18% Similarity=0.189 Sum_probs=147.2
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccCC--------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGD--------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|+++++|.+.++.+ ++|.+++++.++.... ..|+..+...+|++.+++++|.+..+++++|++|+..++.
T Consensus 45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~ 124 (410)
T PRK13392 45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALS 124 (410)
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHH
Confidence 45678888766555 7899999998765421 2344445688999999999999888999999999999998
Q ss_pred Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
.+.. .+|+.|+++..+|.+...... ..|.++..++. .|.+.+++.++.. ..+++++|++++|
T Consensus 125 ~l~~~~~g~~vi~~~~~h~s~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~t~~v~i~~~ 187 (410)
T PRK13392 125 TLGKLLPGCVILSDALNHASMIEGIR---------RSGAEKQVFRH-----NDLADLEEQLASV---DPDRPKLIAFESV 187 (410)
T ss_pred HHhcCCCCCEEEEehhhhHHHHHHHH---------HcCCeEEEEeC-----CCHHHHHHHHHhc---cCCCCEEEEEeCC
Confidence 6642 367877777777876644222 23666555543 2566777766532 1127899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----------EVCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+|++ |.+.| +++|.++|++||+++|+||+|+ +.. ...+..|+++.|+||++++ .||+++++++
T Consensus 188 ~n~t-G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~-~GG~~~~~~~ 262 (410)
T PRK13392 188 YSMD-GDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGC-LGGYIAASAD 262 (410)
T ss_pred CCCC-ccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhc-ccchhhcCHH
Confidence 9999 89999 9999999999999999999988 221 1123467888999999987 4688888877
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 263 ~~~ 265 (410)
T PRK13392 263 LID 265 (410)
T ss_pred HHH
Confidence 654
No 70
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.87 E-value=6.1e-21 Score=172.02 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=152.4
Q ss_pred CeeeeeccCCcCCCcHHHHHH-HHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 66 IRTVDIRSDTISKPTMEMKNY-MFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a-~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
.-++||.+++.+ ..|.++ |.....++..|+.++.+.+||+.+++++|.+.++.+++|+.|+.+++.+.+ ++||+|
T Consensus 45 ~v~IDLlSDS~T---~aMs~~q~a~~~vGDd~Yagd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~v-~pGd~V 120 (460)
T PRK13237 45 DVYIDLLTDSGT---NAMSDRQWAGMMIGDEAYAGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIAI-KPGQYV 120 (460)
T ss_pred cEEEECcccCCc---hhccHHHHHHHhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCC-CCcCEE
Confidence 467999999987 555555 334455788999999999999999999999999999999999998766655 689854
Q ss_pred EecCCcceeeecccccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+..+|..+.... + ...|..++.+. .+.++.+|+++|+++|++. +..++++|.++.++
T Consensus 121 --p~n~~f~Tt~ah-I-------~~~Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~---~~~~~~lV~a~itv 187 (460)
T PRK13237 121 --PGNMYFTTTRYH-Q-------ELNGGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV---GAENIAYICLAVTV 187 (460)
T ss_pred --CCccchHhhHHH-H-------HhCCcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc---cCCccCceEEEEec
Confidence 555554443210 1 12244444442 2346789999999999863 23467788888888
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C-h-------------------hhhcccCCeEEEecccccCccee
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P-L-------------------AEVCASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~-~-------------------~~~~~~~dv~~~s~sK~l~~p~g 273 (285)
|..||..+|.+++++|.++|++||++||.|.+|. + . ......+|.+++|++|.++.+.|
T Consensus 188 n~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G 267 (460)
T PRK13237 188 NLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG 267 (460)
T ss_pred ccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc
Confidence 8888999999999999999999999999999977 2 1 11235789999999999999888
Q ss_pred EEeecC-cccc
Q psy5413 274 SILAGP-EEFI 283 (285)
Q Consensus 274 g~~~~~-~~~i 283 (285)
|+++.+ +++.
T Consensus 268 G~i~t~D~eL~ 278 (460)
T PRK13237 268 GFLAMNDEELF 278 (460)
T ss_pred eEEEECCHHHH
Confidence 777664 4543
No 71
>PRK07324 transaminase; Validated
Probab=99.87 E-value=1.4e-21 Score=176.36 Aligned_cols=201 Identities=16% Similarity=0.126 Sum_probs=150.9
Q ss_pred CCeeeeeccCCcCCCcH-HHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHcccc
Q psy5413 65 NIRTVDIRSDTISKPTM-EMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~ 139 (285)
+..++++.-+.+....| .+ +++.+.... ...|+...+..+|++.++++++ .+.+++++|+++|+..++.+++ .
T Consensus 25 ~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~-~ 102 (373)
T PRK07324 25 ESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV-E 102 (373)
T ss_pred cCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC-C
Confidence 34566666555554433 44 555544443 4577766678899999999874 2457899999999999999887 6
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~ 217 (285)
+||+|+++.++|..... .. ...|.+++.++..+ ++.+|++++++++++ ++++|++++|+|||
T Consensus 103 ~gd~Vl~~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-------~~kli~i~~p~NPt 166 (373)
T PRK07324 103 PGDHVISVYPTYQQLYD---IP------ESLGAEVDYWQLKEENGWLPDLDELRRLVRP-------NTKLICINNANNPT 166 (373)
T ss_pred CCCEEEEcCCCchhHHH---HH------HHcCCEEEEEecccccCCCCCHHHHHHhCCC-------CCcEEEEeCCCCCC
Confidence 89999998887754433 22 34588888888753 345799999998876 78999999999999
Q ss_pred CeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------hcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413 218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------VCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|.+++.+++++|+++|++||+++|+||+|..+.. ..... .+++.|+||.++. .+.|++++++++++
T Consensus 167 -G~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~li~ 242 (373)
T PRK07324 167 -GALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEVID 242 (373)
T ss_pred -CCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHHHH
Confidence 9999999999999999999999999999873211 11111 2458999999874 67788888877664
No 72
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.87 E-value=4.6e-21 Score=176.07 Aligned_cols=236 Identities=15% Similarity=0.118 Sum_probs=152.3
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.+..++.. +.++.+|++.+|+.+++... ..+..++.
T Consensus 24 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~ 85 (443)
T PRK08360 24 PLVPVKAENAKVWDIEGNEYIDFLSDAAVQ------------------NVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVE 85 (443)
T ss_pred CceEEecceeEEEECCCCEEEEccccHhhc------------------ccCCCCHHHHHHHHHHHHhccCccccccCcHH
Confidence 666777888888886555544444443332 45789999999999887632 22334667
Q ss_pred HHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCCeEEe--cCCcceeeeccccccc-ccccccccce--eee
Q psy5413 103 CKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDSEIIV--GDCSHIMLWEQGGASQ-TSVYSQIGRV--LMR 175 (285)
Q Consensus 103 ~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~--~~~~h~~~~~~~~~~~-~~~~~~~~g~--~~~ 175 (285)
..++.+.|++..+. +.++|++|||+|++.|++++...+|+..|+ ...||+.+.....+.. ...+...++. .+.
T Consensus 86 ~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~ 165 (443)
T PRK08360 86 PLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVH 165 (443)
T ss_pred HHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcE
Confidence 88999999998753 578999999999999999998666765443 4688987644332221 1111111111 122
Q ss_pred eeecCCCCC------------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEE
Q psy5413 176 GVTNQKDGT------------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVH 242 (285)
Q Consensus 176 ~~~~~~~~~------------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li 242 (285)
.++.+.... .+++.+++.++.. .+.+++++|++|+.+|++ |.++ +.+++++|.++|++||+++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~iAAvi~eP~~~~~-G~~~~~~~~l~~l~~l~~~~g~llI 242 (443)
T PRK08360 166 YIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGE--VYAEGVAALFAEPIQGDA-GMIVPPEDYFKKLKKILDEHGILLV 242 (443)
T ss_pred EEeCCccccccccCchhhhHHHHHHHHHHHHHhc--cCCCCeEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 222211000 2345566666431 123489999999999998 5554 57799999999999999999
Q ss_pred EeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 243 MDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 243 ~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+||+|+++.. .....++. +.+++|.+++ |.|+ +++++++++
T Consensus 243 ~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~piga-v~~~~~i~~ 292 (443)
T PRK08360 243 VDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGLPISA-TIGRAEIMD 292 (443)
T ss_pred EeccccCCCcCccchhhhhcCCCCCEEEecccccCCceeEE-EEEcHHHHh
Confidence 9999884321 11122222 4577999987 5554 555666553
No 73
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.87 E-value=5.3e-21 Score=173.86 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=153.2
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CC---cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KE---AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~---~~~~~~~Gs~a~~~a 132 (285)
|+++++|..+.+.. +++.+.+++.+.......|....+..+|++.+++++ | .+ .+++++|+++++..+
T Consensus 27 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~ 106 (393)
T TIGR03538 27 SKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAF 106 (393)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHH
Confidence 56789998877765 566888888876554456776666788999999886 2 22 356788889999999
Q ss_pred HHHccccCCCe--EEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEE
Q psy5413 133 IMTHCDRRDSE--IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 133 l~~~~~~~g~~--vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
+.+++ ++|+. |+++.+++..... .. ...|.+++.++..++ +.+|++++++++.+ ++++|
T Consensus 107 ~~~l~-~~gd~~~vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i 169 (393)
T TIGR03538 107 AQAVI-NPGQAPLVVMPNPFYQIYEG---AA------LLAGAEPYFLNCTAENGFLPDFDAVPESVWR-------RCQLL 169 (393)
T ss_pred HHHHc-CCCCcceEEecCCCCcchHH---HH------HhcCCeEEEeeccccCCCCCCHHHHHHHHhh-------cceEE
Confidence 99887 58885 7888877644332 22 345888888887433 46899999998876 78999
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh--------h---c--c---cC-C-eEEEecccccC-
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE--------V---C--A---SV-D-TVMFCLSKGLG- 269 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~--------~---~--~---~~-d-v~~~s~sK~l~- 269 (285)
++++|+||| |.+++.+++++|+++|++||++||+||+|..+.. . . . .. . +++.|+||.++
T Consensus 170 ~l~~p~NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~ 248 (393)
T TIGR03538 170 FVCSPGNPT-GAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNL 248 (393)
T ss_pred EEeCCCCCc-CcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCC
Confidence 999999999 9999999999999999999999999999872210 0 0 0 11 2 44999999644
Q ss_pred -cceeEEeecCccccc
Q psy5413 270 -APVGSILAGPEEFIQ 284 (285)
Q Consensus 270 -~p~gg~~~~~~~~i~ 284 (285)
|.+.|++++++++++
T Consensus 249 ~GlRvG~~i~~~~l~~ 264 (393)
T TIGR03538 249 PGLRSGFVAGDAEILK 264 (393)
T ss_pred cccceEEEecCHHHHH
Confidence 477888888887764
No 74
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.87 E-value=7.9e-21 Score=173.73 Aligned_cols=210 Identities=14% Similarity=0.126 Sum_probs=142.5
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCc-cCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVY-LEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y-~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++ +.++.+|++.+++.+++.....+ ..++...+|.++|.+.++. ++++|++|||+|++.|++++.
T Consensus 52 G~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr 131 (433)
T PRK00615 52 GKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR 131 (433)
T ss_pred CCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHH
Confidence 5566666543 44779999999999887643332 2466788899999998754 478999999999999999998
Q ss_pred ccCCCeEEe--cCCcceeeec-cccccc-ccc---cccccc-----eeeeeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413 138 DRRDSEIIV--GDCSHIMLWE-QGGASQ-TSV---YSQIGR-----VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 138 ~~~g~~vi~--~~~~h~~~~~-~~~~~~-~~~---~~~~~g-----~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
..+|+..|+ ...||+.+.. .++++. ... +....+ .....++ ..|++++++.+.+ +.+++
T Consensus 132 ~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~----~~~~~ 202 (433)
T PRK00615 132 GITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP-----YNDFQIFQTVMNS----LGHRV 202 (433)
T ss_pred HhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCC-----CCCHHHHHHHHHh----cCCce
Confidence 666764333 5778986532 222221 000 000000 0001111 2378999999865 23479
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCCeE--EEecccccCc--ceeEEee
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVDTV--MFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~ 277 (285)
++|++|++++..|....+++++++|+++|++||+++|+||+++++ ....++.++. +.+++|.+++ |.| +++
T Consensus 203 aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~~gK~lggG~p~~-av~ 281 (433)
T PRK00615 203 AGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITVYGKILGGGLPAA-AVV 281 (433)
T ss_pred EEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEEEcccccCCccee-eee
Confidence 999999999987445566899999999999999999999998744 2233333333 4568899986 654 555
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
+++++++
T Consensus 282 ~~~~i~~ 288 (433)
T PRK00615 282 AHKSIMD 288 (433)
T ss_pred ecHHHHh
Confidence 6666543
No 75
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.87 E-value=3.6e-21 Score=175.79 Aligned_cols=198 Identities=19% Similarity=0.220 Sum_probs=144.3
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccC--C------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|.+.++-+ ++|++.+++.++... . ..|+..+...+|++.+++++|.+..+++++|++|++.+++
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~ 124 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLS 124 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence 46789998776555 689999999876542 1 1244677899999999999998888999999999999999
Q ss_pred Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
.+.. ++++.++.+...|.+....... .+.++..++. .|++++++.++.. ..+++++|+++++
T Consensus 125 ~l~~~~~~~~i~~~~~~h~s~~~~~~~---------~~~~~~~~~~-----~d~~~le~~l~~~---~~~~~~~v~~~~v 187 (407)
T PRK09064 125 TLAKLIPDCVIFSDELNHASMIEGIRR---------SRCEKHIFRH-----NDVAHLEELLAAA---DPDRPKLIAFESV 187 (407)
T ss_pred HHhCCCCCCEEEEeCcchHHHHHHHHH---------cCCcEEEECC-----CCHHHHHHHHHhc---cCCCCeEEEEeCC
Confidence 8653 2455444454456544221111 2444444433 3788888888641 1126899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------h---hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------E---VCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~---~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+|++ |.+.| +++|.++|++||+++|+||+|+ +.. . +.+..|+++.|+||.+|+ .||+++++++
T Consensus 188 ~s~~-G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~-~GG~~~~~~~ 262 (407)
T PRK09064 188 YSMD-GDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGV-MGGYIAGSAA 262 (407)
T ss_pred CCCC-ccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhc-cCceEecCHH
Confidence 9999 89999 9999999999999999999986 221 1 112457788999999986 5788888877
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 263 ~~~ 265 (407)
T PRK09064 263 LVD 265 (407)
T ss_pred HHH
Confidence 654
No 76
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.87 E-value=4.1e-21 Score=177.27 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=141.9
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccC--CC-C-ccCChhHHHHHHHHHhHcC-------CCcEEEcCChHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DD-V-YLEDPTCKELQEKAAKLAG-------KEAAIFVPSGTMGN 129 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~-~-y~~~~~~~~l~~~la~~~g-------~~~~~~~~~Gs~a~ 129 (285)
|++++||.++ +.++.+|++.+|+.+++.. +. . ...++...+|.+.|++.+. .++++|++|||+|+
T Consensus 63 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAv 142 (472)
T PRK08742 63 GRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGV 142 (472)
T ss_pred CCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHH
Confidence 4556666544 4578999999999988652 11 1 1235668899999998864 35789999999999
Q ss_pred HHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccce---eeeeeecCCCC------------CCC
Q psy5413 130 LIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDG------------TFD 186 (285)
Q Consensus 130 ~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~------------~~d 186 (285)
++|++++... +++ +|| ....||+.+.....+...+.+...++. .+..+|.+... ..+
T Consensus 143 E~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 222 (472)
T PRK08742 143 EVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQA 222 (472)
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHH
Confidence 9999998643 233 344 367889887543333211222222221 12222221110 013
Q ss_pred HHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE
Q psy5413 187 LDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV 260 (285)
Q Consensus 187 ~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~ 260 (285)
++.+++.++. +.+++++|++|+ .++.+|..+.|++++++++++|++||+++|+||+++++ ....++.++.
T Consensus 223 ~~~l~~~~~~----~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~ 298 (472)
T PRK08742 223 ADALQALFEQ----SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVM 298 (472)
T ss_pred HHHHHHHHHh----CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCC
Confidence 5677777754 345899999999 68887556788999999999999999999999998844 2334455655
Q ss_pred --EEecccccCc---ceeEEeecCccc
Q psy5413 261 --MFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 261 --~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
+.+++|.+++ |+++++.+ +++
T Consensus 299 PDiv~~gKgl~gG~~Plaav~~~-~ei 324 (472)
T PRK08742 299 PDLLCLSKGLTGGFLPLSAVLAT-QQL 324 (472)
T ss_pred CCEEEEcccccCCCCCcceeecc-HHH
Confidence 7777899975 77776654 444
No 77
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.87 E-value=7e-21 Score=173.72 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=152.6
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC-----C-cEEEcCChHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK-----E-AAIFVPSGTMGNLI 131 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~-----~-~~~~~~~Gs~a~~~ 131 (285)
+..+++|..+.+.. +.+.+.+++.+.... ...|. ..+..+|++.+++++ |. + .+++++|+++++..
T Consensus 43 ~~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~ 121 (410)
T PRK06290 43 DMELIDMGVGEPDEMADESVVEVLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAM 121 (410)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHH
Confidence 45689999877766 556778877754432 23465 367889999999985 32 2 35777778899999
Q ss_pred HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
++.+++ .+||.|+++.++|..... .. ...|.+++.++.++ ++.+|++++++++.+ ++++|+
T Consensus 122 ~~~~~~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-------~~k~i~ 184 (410)
T PRK06290 122 LPSCFI-NPGDVTLMTVPGYPVTGT---HT------KYYGGEVYNLPLLEENNFLPDLDSIPKDIKE-------KAKLLY 184 (410)
T ss_pred HHHHhC-CCCCEEEEeCCCCccHHH---HH------HHcCCEEEEEecCCCcCCcCCHHHHHHhhcc-------cceEEE
Confidence 998877 699999998887654332 22 34588999988754 345799999998876 789999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEe
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~ 276 (285)
+++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+.. ..++++.|+||.++. .+.|++
T Consensus 185 l~nP~NPT-G~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~i 263 (410)
T PRK06290 185 LNYPNNPT-GAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFV 263 (410)
T ss_pred EECCCCCC-CcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeE
Confidence 99999999 999999999999999999999999999987221 1111 233669999999864 677899
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 264 i~~~~l~~ 271 (410)
T PRK06290 264 VGNELIVK 271 (410)
T ss_pred EeCHHHHH
Confidence 88887664
No 78
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=99.86 E-value=7.7e-21 Score=174.85 Aligned_cols=251 Identities=14% Similarity=0.116 Sum_probs=158.1
Q ss_pred ccchhhhhhcccC--CCCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHH
Q psy5413 11 SHRQTKIAREVLT--LPTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMF 88 (285)
Q Consensus 11 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~ 88 (285)
-+.|++....... ...|..+.++.+.+.|+..++.+++.++.++.. +.++.+|+|.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~ai~ 65 (442)
T TIGR00709 4 LSRQNEMESNVRSYPRKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTL------------------ALGHNHPNMKQKIL 65 (442)
T ss_pred ccHHHHHHhhhhccccCCCceEEeccccEEEeCCCCEEEEccccHhhh------------------cCCCCCHHHHHHHH
Confidence 3455555333322 223677888899999987655555554444432 34789999999999
Q ss_pred hcccC-C---CCccCChhHHHHHHHHHhHcCC----CcE-EEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecc
Q psy5413 89 NCEVG-D---DVYLEDPTCKELQEKAAKLAGK----EAA-IFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQ 157 (285)
Q Consensus 89 ~~~~~-~---~~y~~~~~~~~l~~~la~~~g~----~~~-~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~ 157 (285)
+++.. . ..+..++...+|.++|++++.. ... ++++|||+|++.|++++...+|+. |+. ...||+.+...
T Consensus 66 ~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ 145 (442)
T TIGR00709 66 DYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGA 145 (442)
T ss_pred HHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHH
Confidence 88763 1 1223567788999999998742 233 556999999999999998666653 443 67889877543
Q ss_pred cccccccccccccce---eeeeeecCCCCC--------CCHH----HHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 158 GGASQTSVYSQIGRV---LMRGVTNQKDGT--------FDLD----EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 158 ~~~~~~~~~~~~~g~---~~~~~~~~~~~~--------~d~~----~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
..+.....+...++. .+..++...... .+.+ .+++.++. .....+++++|++|++++..|+.+.
T Consensus 146 ~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iaavi~Epi~g~~G~~~~ 224 (442)
T TIGR00709 146 LAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIED-VESGVDKPAAVILEAIQGEGGVVAA 224 (442)
T ss_pred HhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHh-hccCCCceEEEEEccccCCCCCccC
Confidence 333211111111111 112222211111 1122 23333321 0112347999999999998867778
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~ 280 (285)
|.+++++|+++|++||+++|+||+++++. ...++.++. +.+++|++++ |+|+++..++
T Consensus 225 ~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~Pigav~~~~~ 291 (442)
T TIGR00709 225 PSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGLPLAVLLIAPE 291 (442)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCCcccEEEEEchH
Confidence 99999999999999999999999988432 222334433 5557899987 8888776543
No 79
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.86 E-value=5.2e-21 Score=173.81 Aligned_cols=201 Identities=14% Similarity=0.141 Sum_probs=154.6
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~ 135 (285)
..+++|..+.+.. +++.+.+++.+.... ...|.+.+...+|++.+++++ | .+.+++++|+++|+..++.+
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 112 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFES 112 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHH
Confidence 3568888877776 456788887765443 235766677889999999986 3 23568899999999999998
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
++ ++|+.|++++++|....... ...|.+++.++.++ ++.+|++++++++++ ++++|++++|
T Consensus 113 l~-~~g~~Vlv~~p~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-------~~~~v~i~~p 175 (391)
T PRK08361 113 LL-EEGDEVIIPDPAFVCYVEDA---------KIAEAKPIRIPLREENEFQPDPDELLELITK-------RTRMIVINYP 175 (391)
T ss_pred hc-CCCCEEEEcCCCCcccHHHH---------HHcCCEEEEEecCCccCCCCCHHHHHHhccc-------ccEEEEEeCC
Confidence 77 58999999998876554322 23488888888754 346899999999987 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeEEEecccccCc--ceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTVMFCLSKGLGA--PVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~ 281 (285)
+||| |.++|.+.+++|+++|+++++++|+||+|..+. ......++++.|+||.++. .+.|+++++++
T Consensus 176 ~NPt-G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~ 254 (391)
T PRK08361 176 NNPT-GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQ 254 (391)
T ss_pred CCCC-CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHH
Confidence 9999 899999999999999999999999999986221 1111234558999999875 45678888777
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 255 ~~~ 257 (391)
T PRK08361 255 VIK 257 (391)
T ss_pred HHH
Confidence 654
No 80
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.86 E-value=5.6e-21 Score=174.75 Aligned_cols=197 Identities=15% Similarity=0.135 Sum_probs=152.2
Q ss_pred cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------------CcEEEc
Q psy5413 64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------------EAAIFV 122 (285)
Q Consensus 64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------------~~~~~~ 122 (285)
.++.+++|..+.+. .+.+.+.+++.+.+.. ...|....+..+|++.++++++. +.++++
T Consensus 31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it 110 (412)
T PTZ00433 31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLC 110 (412)
T ss_pred CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEe
Confidence 36788999998886 3677899998776543 34576555688999999998752 345888
Q ss_pred CChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccc
Q psy5413 123 PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNI 200 (285)
Q Consensus 123 ~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~ 200 (285)
+|+++++..++.+++ .+||+|+++.++|...... . ...|.+++.++..+ ++.+|++++++++++
T Consensus 111 ~G~~~al~~~~~~~~-~~gd~vlv~~P~y~~~~~~---~------~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~---- 176 (412)
T PTZ00433 111 SGVSHAILMALTALC-DEGDNILVPAPGFPHYETV---C------KAYGIEMRFYNCRPEKDWEADLDEIRRLVDD---- 176 (412)
T ss_pred CChHHHHHHHHHHhc-CCCCEEEEccCCcccHHHH---H------HHcCCEEEEEecCccccCcCCHHHHHHHhcc----
Confidence 999999999999887 6899999998887554332 2 34588888887643 457899999999876
Q ss_pred cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCC-eEEEecccccC
Q psy5413 201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVD-TVMFCLSKGLG 269 (285)
Q Consensus 201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~d-v~~~s~sK~l~ 269 (285)
++++|++++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+....+ +++.|+||.++
T Consensus 177 ---~~~~i~~~~p~NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~ 252 (412)
T PTZ00433 177 ---RTKALIMTNPSNPC-GSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLV 252 (412)
T ss_pred ---CceEEEEeCCCCCC-CcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcC
Confidence 78999999999999 899999999999999999999999999987321 1111223 44899999874
Q ss_pred c--ceeEEeec
Q psy5413 270 A--PVGSILAG 278 (285)
Q Consensus 270 ~--p~gg~~~~ 278 (285)
. .+.|+++.
T Consensus 253 ~pGlRlG~~i~ 263 (412)
T PTZ00433 253 VPGWRLGWLLL 263 (412)
T ss_pred CCCeeEEEEEE
Confidence 4 66777764
No 81
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.86 E-value=6.1e-21 Score=174.55 Aligned_cols=238 Identities=16% Similarity=0.145 Sum_probs=157.5
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~ 101 (285)
.|..+.++.+.+.|+..++.+++....|+.- +.++.+|++.+++.+++... ..+ ..++
T Consensus 22 ~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~ 83 (421)
T PRK09792 22 CNFFAQSAENATLKDVEGNEYIDFAAGIAVL------------------NTGHRHPDLVAAVEQQLQQFTHTAYQIVPYE 83 (421)
T ss_pred CCeeEEeccccEEEeCCCCEEEEccCchhhh------------------cCCCCCHHHHHHHHHHHHhccCcccCccCCH
Confidence 3566778888888887666665555544442 33779999999999887632 112 2456
Q ss_pred hHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccccc-----
Q psy5413 102 TCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIG----- 170 (285)
Q Consensus 102 ~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~----- 170 (285)
...++.+.|++... .+.++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...+
T Consensus 84 ~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~ 163 (421)
T PRK09792 84 SYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPG 163 (421)
T ss_pred HHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCC
Confidence 67889999998864 2567999999999999999998666654 343 57789877543322211 1122211
Q ss_pred ceeeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 171 RVLMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 171 g~~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
+...+++|....+ ..+++.+++.+++. .+.+++++|++|+.++++|..+.|.+++++|+++|++||+++|+||++
T Consensus 164 ~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~--~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~ 241 (421)
T PRK09792 164 SVYHVPYPSDLHGISTQDSLDAIERLFKSD--IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQ 241 (421)
T ss_pred CcEEcCCCcccccccHHHHHHHHHHHHHhc--cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 2222233321111 12457788877531 012379999999999998445669999999999999999999999998
Q ss_pred CChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 248 LPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 248 ~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++. ...+..++. +.+++|.+++ |+|++ ++++++++
T Consensus 242 tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G~pigav-~~~~~i~~ 286 (421)
T PRK09792 242 SGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGV-VGNANIMD 286 (421)
T ss_pred cCCCCCCchhHHHhcCCCCcEEEeehhhcCCCceEEE-EEcHHHHh
Confidence 8331 122222222 6788899987 77764 45555543
No 82
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.86 E-value=1e-20 Score=172.76 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=151.0
Q ss_pred cCCeeeeeccCCcC-----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHH
Q psy5413 64 VNIRTVDIRSDTIS-----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMG 128 (285)
Q Consensus 64 ~~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a 128 (285)
.++.+++|..+.+. .+++.+.+++.+.... ...|++.....+|++.++++++. +.+++++|++++
T Consensus 30 ~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~a 109 (409)
T PLN00143 30 DHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHA 109 (409)
T ss_pred CCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHH
Confidence 35788999988886 4666888888776543 24576667788899999998732 346888899999
Q ss_pred HHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceE
Q psy5413 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 129 ~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
+..++.+++ .+||.|+++.++|...... . ...|.+++.++.. .++.+|++++++++++ +++
T Consensus 110 l~~~~~~l~-~~gd~v~v~~P~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~ 172 (409)
T PLN00143 110 AEIIIKVLA-RPEANILLPRPGFPDVETY---A------IFHHLEIRHFDLLPEKGWEVDLDAVEAIADE-------NTI 172 (409)
T ss_pred HHHHHHHHc-CCCCEEEEcCCCCcCHHHH---H------HHcCCEEEEEeccCCCCCcCCHHHHHHhccc-------CCE
Confidence 999999887 5899999988886544321 2 2347788887753 3456899999998876 788
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe-EEEecccccCc--cee
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT-VMFCLSKGLGA--PVG 273 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv-~~~s~sK~l~~--p~g 273 (285)
++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+.....+ ++.|+||.++. .+.
T Consensus 173 ~~~~~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRv 251 (409)
T PLN00143 173 AMVIINPGNPC-GSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGL 251 (409)
T ss_pred EEEEECCCCCC-CCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccce
Confidence 99999999999 999999999999999999999999999987221 11111133 48999998555 677
Q ss_pred EEeec
Q psy5413 274 SILAG 278 (285)
Q Consensus 274 g~~~~ 278 (285)
|++++
T Consensus 252 G~~v~ 256 (409)
T PLN00143 252 GWLVT 256 (409)
T ss_pred EEEEe
Confidence 77776
No 83
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.86 E-value=5.5e-21 Score=171.73 Aligned_cols=183 Identities=18% Similarity=0.274 Sum_probs=141.4
Q ss_pred CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCC---------------e
Q psy5413 79 PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS---------------E 143 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~---------------~ 143 (285)
.+++|.+++.+... ..+...+...++++.+++++|.+.+++++||++|+.+++++++ ++|| +
T Consensus 25 ~~~~v~~a~~~~~~--~~~~~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~-~~Gd~~~~~~~~~s~~~~~e 101 (363)
T TIGR01437 25 VSDEVADAQKRGAQ--NYFEIKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI-TRGNRYLVENLHDSKIEVNE 101 (363)
T ss_pred CCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh-cCCCcchhhcccccccccce
Confidence 68899999988753 2334556788999999999999999999999999999999987 5787 6
Q ss_pred EEecCCcceeeec--ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE-EecccCCCCee
Q psy5413 144 IIVGDCSHIMLWE--QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC-VENTHNYCGGT 220 (285)
Q Consensus 144 vi~~~~~h~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~-i~~~~n~~gG~ 220 (285)
||++.+ |...+. ..... ...|.+++.++. ++.+|+++++++|++ +|++|+ +++++|++ |.
T Consensus 102 Vi~~~~-~~~~~~~~~~~~~------~~~g~~~v~v~~--~~~~d~~~le~ai~~-------~t~ai~~v~~~~~~~-g~ 164 (363)
T TIGR01437 102 VVLPKG-HNVDYGAPVETMV------RLGGGKVVEAGY--ANECSAEQLEAAITE-------KTAAILYIKSHHCVQ-KS 164 (363)
T ss_pred EEEECc-cchhcCCchHHHH------HhcCCeEEEEcC--CCCCCHHHHHHhcCh-------hceEEEEEecCCCCc-CC
Confidence 666542 222211 00111 234777777765 345899999999988 778666 56778888 88
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+.| +++|+++|++||+++|+|++|. .+.. ...++|++++|+||+|++|.+|++++++++++
T Consensus 165 ~~~---~~~i~~~a~~~gi~vivD~a~~~~~~~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~ 227 (363)
T TIGR01437 165 MLS---VEDAAQVAQEHNLPLIVDAAAEEDLQKYYRLGADLVIYSGAKAIEGPTSGLVLGKKKYIE 227 (363)
T ss_pred cCC---HHHHHHHHHHcCCeEEEECCCCCchHHHHHcCCCEEEEeCCcccCCCceEEEEEcHHHHH
Confidence 999 8999999999999999999998 3321 12358999999999999988999998877654
No 84
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.86 E-value=1.9e-21 Score=175.04 Aligned_cols=198 Identities=17% Similarity=0.164 Sum_probs=152.1
Q ss_pred Ceeeeecc-CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCC
Q psy5413 66 IRTVDIRS-DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 66 ~~~~~~~~-~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
+.+++|.. +++.++++.+++++.+.......| +.....+|++.++++++.+. +++++|+++++..++.+++ ++||
T Consensus 29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Y-p~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l~-~~gd 106 (366)
T PRK01533 29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALY-PDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVL-KAGD 106 (366)
T ss_pred CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcC-CCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCCC
Confidence 46788875 445557889999988765444445 45668899999999998654 5888888999999999887 5899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
.|++.++++...... + ...|.+++.++.+ ++.+|++++++++++ ++++|++++|+||| |.++
T Consensus 107 ~vlv~~P~y~~~~~~---~------~~~g~~v~~v~~~-~~~~d~~~l~~~~~~-------~~~~v~i~~P~NPT-G~~~ 168 (366)
T PRK01533 107 NIVTAGATFPQYRHH---A------IIEGCEVKEVALN-NGVYDLDEISSVVDN-------DTKIVWICNPNNPT-GTYV 168 (366)
T ss_pred EEEEcCCcHHHHHHH---H------HHcCCEEEEeecC-CCCcCHHHHHHHhCc-------CCcEEEEeCCCCCC-CCCc
Confidence 999988876544332 2 3458899998884 556899999999876 78999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-C-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-D-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.+++++|+++|++++ ++|+||+|..+. ...... . +++.|+||.++. .+.|++++++++++
T Consensus 169 ~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~ 242 (366)
T PRK01533 169 NDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIE 242 (366)
T ss_pred CHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHH
Confidence 9999999999998877 577899976211 111222 3 448999998874 67888888887764
No 85
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.86 E-value=7.3e-21 Score=175.52 Aligned_cols=234 Identities=14% Similarity=0.081 Sum_probs=152.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-C---CCccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-D---DVYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~---~~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.+..|+.. +.++.||+|.+++.+++.. . .....++.
T Consensus 46 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~ 107 (464)
T PRK06938 46 PLALKRARGIYVEDVEGRQFIDCLAGAGTL------------------ALGHNHPVVIEAIQQVLADELPLHTLDLTTPV 107 (464)
T ss_pred CceEEeccccEEEeCCCCEEEEccCCcccc------------------ccCCCCHHHHHHHHHHHHhhhcccccccCCHH
Confidence 555666677777765544444443333321 3477999999999988752 1 11224677
Q ss_pred HHHHHHHHHhHcCC-----CcEEEc-CChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccccccccccc---
Q psy5413 103 CKELQEKAAKLAGK-----EAAIFV-PSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQIGR--- 171 (285)
Q Consensus 103 ~~~l~~~la~~~g~-----~~~~~~-~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~~g--- 171 (285)
..+|.+++.+.... +..+|+ +|||+|++.|++++...+|+. |+ +...||+.+.....+.....+...++
T Consensus 108 ~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~ 187 (464)
T PRK06938 108 KDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALL 187 (464)
T ss_pred HHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHHhhcCCccccccCCCCC
Confidence 88888888887642 245565 799999999999988666654 33 35788987754333321111211111
Q ss_pred eeeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 172 VLMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 172 ~~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
..+..++.+... ..+++.+++.+++. ..+.+++++|++|+.++..|..+.|.+++++++++|++||+
T Consensus 188 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~gi 266 (464)
T PRK06938 188 PGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDP-ESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGI 266 (464)
T ss_pred CCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhh-ccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 112233321111 02367788888541 11123799999999999874556679999999999999999
Q ss_pred eEEEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413 240 PVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 240 ~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~ 279 (285)
++|+||+++++ ....++.++. +.+++|++++ |+++++..+
T Consensus 267 LlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~PlsAv~~~~ 315 (464)
T PRK06938 267 PLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSLPLAVVVYRE 315 (464)
T ss_pred EEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCCceEEEeehh
Confidence 99999998843 3444556666 7777899987 988887653
No 86
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.86 E-value=1.2e-20 Score=171.47 Aligned_cols=204 Identities=12% Similarity=0.048 Sum_probs=153.4
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C-----CcEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K-----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~-----~~~~~~~~Gs~a~~~al~ 134 (285)
+.+++|..+.+.. +.+.+.+++.+.... ...|.+.....++++.++++++ . +.+++++|+++|+..++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~ 109 (391)
T PRK07309 30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLT 109 (391)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 3578888777665 455777887765543 2356656667889999999863 1 357889999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ .+|++|++.++.|..... .. +..|.+++.++.++ ++.+|++++++++++ +.+++++|++++|
T Consensus 110 ~~~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~----~~~~~~~i~l~~P 175 (391)
T PRK07309 110 AIL-EPGDKVLLPAPAYPGYEP---IV------NLVGAEIVEIDTTENDFVLTPEMLEKAILE----QGDKLKAVILNYP 175 (391)
T ss_pred Hhc-CCCCEEEEeCCCCcchHH---HH------HHcCCEEEEEecCCcCCcCCHHHHHHHhhc----cCCCeEEEEEECC
Confidence 876 689999998887654432 22 34588888888644 346899999999865 2236899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc-cCC--eEEEecccccCc--ceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA-SVD--TVMFCLSKGLGA--PVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~-~~d--v~~~s~sK~l~~--p~gg~~~~~~~ 281 (285)
+||| |.+++.+++++|+++|++||+++|+||+|..+. .+.. ..+ +++.|+||.++. .+.|+++++++
T Consensus 176 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~~ 254 (391)
T PRK07309 176 ANPT-GVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPAE 254 (391)
T ss_pred CCCC-CcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCHH
Confidence 9999 999999999999999999999999999987221 1111 112 458999999864 67788988887
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 255 ~~~ 257 (391)
T PRK07309 255 FTA 257 (391)
T ss_pred HHH
Confidence 764
No 87
>PRK07337 aminotransferase; Validated
Probab=99.86 E-value=8.5e-21 Score=172.25 Aligned_cols=202 Identities=15% Similarity=0.059 Sum_probs=155.2
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~ 134 (285)
++.+++|..+.+.. +.+.+.+++.+.... ...|.......++++.+++++ |. +.+++++|+++|+..++.
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 108 (388)
T PRK07337 29 GRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACL 108 (388)
T ss_pred CCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHH
Confidence 45678999887765 466888888766543 345665556888999999986 32 346889999999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+++ ++||+|++++++|....... ...|.+++.++.+. ++.+|++++++.+++ ++++|++++
T Consensus 109 ~l~-~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~ 171 (388)
T PRK07337 109 ALV-ERGDEVLMPDPSYPCNRHFV---------AAAEGRPVLVPSGPAERFQLTAADVEAAWGE-------RTRGVLLAS 171 (388)
T ss_pred Hhc-CCCCEEEEeCCCchhhHHHH---------HHcCCEEEEeecCCccCCcCCHHHHHhhcCc-------cceEEEEEC
Confidence 877 68999999988876543321 23477788887643 357899999999977 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcccCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCASVDTV-MFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
|+||| |.+++.+++++|+++|+++|+++|+||+|..+. . .....+++ +.|+||.++. .+.|++++++++
T Consensus 172 p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l 250 (388)
T PRK07337 172 PSNPT-GTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEAL 250 (388)
T ss_pred CCCCC-CcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHH
Confidence 99999 999999999999999999999999999977221 1 11233455 7899998864 678888888776
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 251 ~~ 252 (388)
T PRK07337 251 VG 252 (388)
T ss_pred HH
Confidence 54
No 88
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.86 E-value=3.7e-21 Score=174.51 Aligned_cols=195 Identities=19% Similarity=0.270 Sum_probs=143.5
Q ss_pred eeccCCcCC--CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc
Q psy5413 70 DIRSDTISK--PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 70 ~~~~~~~~~--~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~ 139 (285)
+|.+.++-+ .+|++++++.+.... ...|+....+.+||+.+++++|.+.++++++|+.|+..++.+++ +
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l~-~ 80 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFA-K 80 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHhC-C
Confidence 455555444 678888887766542 22466667899999999999999999999999999999998876 6
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHH---Hhccccc----ccCCceEEEEEec
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEA---KFSTADN----IHCASTSLVCVEN 212 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~---~i~~~~~----~~~~~~~~v~i~~ 212 (285)
+||.|++++..|.++.....+. +..++.++.. |++++++ .+.+... ....++++|++|+
T Consensus 81 ~GD~Vl~~~~~h~s~~~~~~l~---------~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 81 RGDLLVVDRGVNEALLVGVSLS---------RANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred CCCEEEEeccccHHHHHHHHHc---------CCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 9999999999987764432233 4455555542 3444444 4432100 0123689999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----h------h--cccCCeEEEecccccCcceeEEeec
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----E------V--CASVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~------~--~~~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
++|++ |.+.| +++|+++|++||+++|+||+|+ +.. . . ..++|+++.|++|+++ |.||++++
T Consensus 147 v~~~~-G~i~~---l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g-~~gg~v~~ 221 (392)
T PLN03227 147 LYKNT-GTLAP---LKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFG-SVGGMTVG 221 (392)
T ss_pred CcCCC-CcccC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhh-ccCcEEec
Confidence 99998 99999 9999999999999999999987 111 0 1 2356999999999876 68888888
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 222 ~~~~~~ 227 (392)
T PLN03227 222 SEEVVD 227 (392)
T ss_pred CHHHHH
Confidence 877653
No 89
>PRK07481 hypothetical protein; Provisional
Probab=99.86 E-value=8.7e-21 Score=174.65 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=151.3
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCC
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LED 100 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~ 100 (285)
.|..+.++.+.+.|+..++.+++....|+. .+.++.+|++.+|+.+++.... .+ ..+
T Consensus 24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~ 85 (449)
T PRK07481 24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWN------------------VNVGHNREEVKEAIVRQLDELEYYSTFDGTTH 85 (449)
T ss_pred CCceEEeccccEEEeCCCCEEEECchhHHh------------------hcCCCCCHHHHHHHHHHHHhccceecccccCC
Confidence 356677777788887655554444443333 2447899999999998876311 11 256
Q ss_pred hhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccc
Q psy5413 101 PTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQI 169 (285)
Q Consensus 101 ~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~ 169 (285)
+...++.++|+++++ .++++|++|||+|+++|++++... +++ +|+ ....||+.+.....+...+.+...
T Consensus 86 ~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~ 165 (449)
T PRK07481 86 PRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRN 165 (449)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccc
Confidence 778899999999873 467899999999999999998743 233 344 367889877433322211212211
Q ss_pred -----cceeeeeeecCCC--CC-CCHHH--------HHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 170 -----GRVLMRGVTNQKD--GT-FDLDE--------MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 170 -----~g~~~~~~~~~~~--~~-~d~~~--------l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
.+...+..|.... +. .|+++ +++.|.. .+.+++++|++|++++..|....|.+++++|+++
T Consensus 166 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~---~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~l 242 (449)
T PRK07481 166 YEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAF---QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242 (449)
T ss_pred cCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh---cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHH
Confidence 1222222221100 11 14443 3444431 1345899999999999875556788999999999
Q ss_pred HHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 234 CQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 234 a~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
|++||+++|+||+++++ ....+..++. +.+++|++++ |+|++++.+
T Consensus 243 c~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ 298 (449)
T PRK07481 243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNA 298 (449)
T ss_pred HHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcH
Confidence 99999999999998844 2233455555 6777899986 788766653
No 90
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.86 E-value=4.3e-21 Score=178.37 Aligned_cols=216 Identities=13% Similarity=0.074 Sum_probs=141.8
Q ss_pred cCCeeeeecc----CCcCCCcHHHHHHHHhcccCCC----C-ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHH
Q psy5413 64 VNIRTVDIRS----DTISKPTMEMKNYMFNCEVGDD----V-YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLI 131 (285)
Q Consensus 64 ~~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~~----~-y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~ 131 (285)
.|++++||.+ .+.++.||+|.+|+.+++.... . ...++...+|+++|.+.+. .+.++|++|||+|++.
T Consensus 87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~ 166 (504)
T PLN02760 87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDT 166 (504)
T ss_pred CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHH
Confidence 3677788765 4567799999999998876421 1 1245668899999988853 3457999999999999
Q ss_pred HHHHcccc------CCC-eEE-ecCCcceeeeccccccccccccccccee---eeeeecCC-------CC------CCCH
Q psy5413 132 AIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRVL---MRGVTNQK-------DG------TFDL 187 (285)
Q Consensus 132 al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~-------~~------~~d~ 187 (285)
|++++... +++ +|| ....||+.+.....++..+.+...++.. +..++.+. .. ....
T Consensus 167 AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 246 (504)
T PLN02760 167 QVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLA 246 (504)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHH
Confidence 99998522 232 344 3678898874432222111121111211 11222110 00 0112
Q ss_pred HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--
Q psy5413 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV-- 260 (285)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~-- 260 (285)
+++++.+... +.+++++|++|++++..|....|.+++++|+++|++||+++|+||+++++ ....+..++.
T Consensus 247 ~~le~~l~~~---~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PD 323 (504)
T PLN02760 247 DNLENLILKE---GPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPD 323 (504)
T ss_pred HHHHHHHHhc---CCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCc
Confidence 4567766421 23479999999999987555677899999999999999999999998733 3334445554
Q ss_pred EEecccccCc---ceeEEeecCcccc
Q psy5413 261 MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 261 ~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
+.+++|.+++ |+|++++ +++++
T Consensus 324 ivtlgK~lggG~~PigAv~~-~~~i~ 348 (504)
T PLN02760 324 LVSLAKALSSAYMPIGAVLV-SPEIS 348 (504)
T ss_pred EEEecccccCCccccceEee-cHHHH
Confidence 7888899976 8888555 45554
No 91
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.86 E-value=5.9e-21 Score=176.20 Aligned_cols=234 Identities=13% Similarity=0.166 Sum_probs=153.2
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CC-ccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DV-YLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~-y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++....++. .+.++.+|+|.+++.+++... .. ...++.
T Consensus 30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~ 91 (466)
T PRK07030 30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWV------------------NVFGHANPRINQRIKDQVDQLEHVILAGFSHEP 91 (466)
T ss_pred CceEEeeeccEEEECCCCEEEEcchhHHh------------------hcCCCCCHHHHHHHHHHHHhcCCccccccCCHH
Confidence 34566677777777554444333333332 144789999999999887631 11 124567
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccccccccccce
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..+|.++|+++.. .+.++|++|||+|++.|++++... +++ +|+ ....||+.+.....+.....+...++.
T Consensus 92 ~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p 171 (466)
T PRK07030 92 VIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKP 171 (466)
T ss_pred HHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCc
Confidence 8899999999863 467899999999999999998532 233 344 367889877443322211222222221
Q ss_pred ---eeeeeecCCCC------------CCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 173 ---LMRGVTNQKDG------------TFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 173 ---~~~~~~~~~~~------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
.+..+|.+... ..+++++++.+.+ +.+++++|++|+ +++..|..+.|++++++|+++|++
T Consensus 172 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~----~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~ 247 (466)
T PRK07030 172 LLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAE----HHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDR 247 (466)
T ss_pred cCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHh----CCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHH
Confidence 12222221110 1135667777764 345899999999 698876667888999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
||+++|+||+++++ ....++.++. +.+++|++++ |+++++. +++++
T Consensus 248 ~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~-~~ei~ 303 (466)
T PRK07030 248 YGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLT-TDTVY 303 (466)
T ss_pred cCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEe-cHHHH
Confidence 99999999998844 2334556666 7777899987 7776655 45443
No 92
>PRK08363 alanine aminotransferase; Validated
Probab=99.86 E-value=1.2e-20 Score=171.92 Aligned_cols=200 Identities=19% Similarity=0.122 Sum_probs=151.6
Q ss_pred CCeeeeeccCCcC----CCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHHHH
Q psy5413 65 NIRTVDIRSDTIS----KPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLI 131 (285)
Q Consensus 65 ~~~~~~~~~~~~~----~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~~~ 131 (285)
|..+++|..+.+. .+++.+.+++.+.... ...|+..+...+|++.++++++. +.+++++|+++|+..
T Consensus 29 ~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~ 108 (398)
T PRK08363 29 GIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQL 108 (398)
T ss_pred CCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence 5678999998884 3677899998876643 34577677889999999998732 245888889999999
Q ss_pred HHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeee-ecC-CCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 132 AIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV-TNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 132 al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
++.+++ ++||.|++++++|...... . ...|.+++.+ +.+ +.+.+|++++++++++ ++++|+
T Consensus 109 ~~~~~~-~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~ 171 (398)
T PRK08363 109 IFGALL-DPGDEILIPGPSYPPYTGL---V------KFYGGVPVEYRTIEEEGWQPDIDDIRKKITE-------KTKAIA 171 (398)
T ss_pred HHHHhC-CCCCEEEEcCCCCcchHHH---H------HHcCCEEEEeccccccCCcCCHHHHHhhCCc-------ceEEEE
Confidence 999887 6999999998887654331 1 2346666666 332 3346899999999976 789999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---------hhhcccCCeE-EEecccccCc--ceeEEee
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---------AEVCASVDTV-MFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---------~~~~~~~dv~-~~s~sK~l~~--p~gg~~~ 277 (285)
+++|+||| |.+++.+++++|+++|+++|+++|+||+|..+ ..+.....++ +.|+||+++. .+.|+++
T Consensus 172 l~~p~NPt-G~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~ 250 (398)
T PRK08363 172 VINPNNPT-GALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIY 250 (398)
T ss_pred EECCCCCC-CcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEE
Confidence 99999999 99999999999999999999999999998621 1111222345 8999998654 5667776
Q ss_pred c--Cccc
Q psy5413 278 G--PEEF 282 (285)
Q Consensus 278 ~--~~~~ 282 (285)
. ++++
T Consensus 251 ~~~~~~~ 257 (398)
T PRK08363 251 FVDPEGK 257 (398)
T ss_pred EeCcHHH
Confidence 5 5443
No 93
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.86 E-value=7.6e-21 Score=172.25 Aligned_cols=163 Identities=20% Similarity=0.255 Sum_probs=134.1
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+||+.+++++|.+.+++++||++|+..++.+++ ++||+|+++.+.|..+.... ... ...|.++..+
T Consensus 57 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~------~~~G~~~~~v 129 (391)
T TIGR01328 57 GNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTIL-KAGDHLISDECLYGCTFALLEHAL------TKFGIQVDFI 129 (391)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCcchHHHHHHHHHH------hcCCeEEEEE
Confidence 568899999999999999999999999999999998876 69999999887665432211 111 2457777777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|+++... ..+.
T Consensus 130 d~~-----d~e~l~~~i~~-------~tklV~le~p~Np~-G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~~~~ 193 (391)
T TIGR01328 130 NMA-----IPEEVKAHIKD-------NTKIVYFETPANPT-MKLID---MERVCRDAHSQGVKVIVDNTFATPMLTNPVA 193 (391)
T ss_pred CCC-----CHHHHHHhhcc-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCchhccCCchh
Confidence 653 79999999977 79999999999999 89999 999999999999999999998721 2234
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ .+||++++++++++
T Consensus 194 ~g~Divv~S~sK~lgg~g~~~gG~v~~~~~li~ 226 (391)
T TIGR01328 194 LGVDVVVHSATKYIGGHGDVVAGLICGKAELLQ 226 (391)
T ss_pred cCCCEEEccccccccCCCCceEEEEEcCHHHHH
Confidence 5889999999999987 45899999888764
No 94
>PRK07682 hypothetical protein; Validated
Probab=99.86 E-value=5.5e-21 Score=172.92 Aligned_cols=200 Identities=15% Similarity=0.132 Sum_probs=150.9
Q ss_pred eeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcC----C----C-cEEEcCChHHHHHHHHHH
Q psy5413 67 RTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAG----K----E-AAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g----~----~-~~~~~~~Gs~a~~~al~~ 135 (285)
.+++|..+.+.. +.+.+.+++.+.... ...|...+...++++.++++++ . + .+++++|+++|+..++++
T Consensus 21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~ 100 (378)
T PRK07682 21 GVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRA 100 (378)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHH
Confidence 457777766655 445677777665432 3457666778899999999874 2 2 478888999999999998
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
++ ++||.|++++++|..... .. ...|.+++.++.+. ++.+|++++++++.+ ++++|++++|
T Consensus 101 l~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~~~~p 163 (378)
T PRK07682 101 II-NPGDEVLIVEPSFVSYAP---LV------TLAGGVPVPVATTLENEFKVQPAQIEAAITA-------KTKAILLCSP 163 (378)
T ss_pred hC-CCCCEEEEeCCCchhhHH---HH------HHcCCEEEEeecCCccCCCCCHHHHHhhcCc-------ccEEEEEECC
Confidence 87 689999998887654322 11 23477777777642 457899999999976 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc--cCCeEEEecccccCc--ceeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA--SVDTVMFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~ 280 (285)
+||| |.+++.+++++|+++|++||+++|+||+|..+. .+.. ...+++.|+||.++. .+.|+++.++
T Consensus 164 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~ 242 (378)
T PRK07682 164 NNPT-GAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPV 242 (378)
T ss_pred CCCc-CcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCH
Confidence 9999 899999999999999999999999999977221 1111 223559999999874 5668888888
Q ss_pred cccc
Q psy5413 281 EFIQ 284 (285)
Q Consensus 281 ~~i~ 284 (285)
++++
T Consensus 243 ~~i~ 246 (378)
T PRK07682 243 YFSE 246 (378)
T ss_pred HHHH
Confidence 7764
No 95
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.86 E-value=2.6e-21 Score=177.91 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=153.4
Q ss_pred CeeeeeccCCcCCCc-HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC-----CcEEEcCChHHHHHHHHHHcccc
Q psy5413 66 IRTVDIRSDTISKPT-MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK-----EAAIFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~-~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~-----~~~~~~~~Gs~a~~~al~~~~~~ 139 (285)
..+++|+.+++..+. |.+.+++.+.......|+......+|++.++++++. +.+++++|+++++..++.+++ +
T Consensus 85 ~~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~-~ 163 (431)
T PRK15481 85 TPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL-L 163 (431)
T ss_pred chhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC-C
Confidence 346788888777654 567777776544445677666678899999999752 256888888999999999887 6
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe-cccCCCC
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE-NTHNYCG 218 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~-~~~n~~g 218 (285)
+||.|++++++|..... .. ...|.+++.++.++++ +|++++++++++ ++++++++ +|+|||
T Consensus 164 pgd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~g-~~~~~l~~~~~~-------~~k~i~~~p~p~NPT- 225 (431)
T PRK15481 164 PGDSVAVEDPCFLSSIN---ML------RYAGFSASPVSVDAEG-MQPEKLERALAQ-------GARAVILTPRAHNPT- 225 (431)
T ss_pred CCCEEEEeCCCcHHHHH---HH------HHcCCeEEeeccCCCC-CCHHHHHHHHhc-------CCCEEEECCCCCCCC-
Confidence 99999999888755443 22 3458899999885444 899999999976 67888887 799999
Q ss_pred eeeCCHHHHHHHHHHHHHc-CCeEEEeCccCChh-----h-hcccC-C-eEEEecccccCc-ceeEEeecCccccc
Q psy5413 219 GTVLPMQWLRELKARCQEH-NIPVHMDGARLPLA-----E-VCASV-D-TVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~-gi~li~Dea~~~~~-----~-~~~~~-d-v~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
|.+++.+.+++|.++|++| +++||+||+|..+. . +.... . +++.||||.++. .+.|+++.++++++
T Consensus 226 G~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~GlRiG~~i~~~~~~~ 301 (431)
T PRK15481 226 GCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRWALIRSVSKALGPDLRLAFVASDSATSA 301 (431)
T ss_pred CccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCEEEEeeeccccCCCceeEEEeCCHHHHH
Confidence 9999999999999999999 99999999987321 1 11111 2 449999998875 67789998877654
No 96
>PRK07678 aminotransferase; Validated
Probab=99.86 E-value=7.3e-21 Score=175.26 Aligned_cols=235 Identities=14% Similarity=0.097 Sum_probs=151.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---CccCChhH
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VYLEDPTC 103 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~ 103 (285)
|..+.++.+.+.|+..++.+++.+..|+.- +.++.+|++.+|+.+++.... ....++..
T Consensus 30 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~ 91 (451)
T PRK07678 30 TMVVAKAEGAWVTDIQGNRYLDGMSGLWCV------------------NVGYGRKELAEAAYEQLKTLSYFPLTQSHEPA 91 (451)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEccccHHhh------------------cCCCCCHHHHHHHHHHHHhcCccccccCCHHH
Confidence 566677777777776555544444443332 347899999999998876321 11245668
Q ss_pred HHHHHHHHhHcCC-CcEEEcCChHHHHHHHHHHccccC------CC-eEEe-cCCcceeeecccccccccccccccc---
Q psy5413 104 KELQEKAAKLAGK-EAAIFVPSGTMGNLIAIMTHCDRR------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR--- 171 (285)
Q Consensus 104 ~~l~~~la~~~g~-~~~~~~~~Gs~a~~~al~~~~~~~------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g--- 171 (285)
.+|.++|+++++. +.++|++|||+|++.|++++.... ++ +|+. ...||+.+..+..+.....+...++
T Consensus 92 ~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~ 171 (451)
T PRK07678 92 IKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLA 171 (451)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCC
Confidence 8999999998754 367999999999999999986432 33 3443 5788987754333221111111111
Q ss_pred eeeeeeecCCCCC---------CC---HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 172 VLMRGVTNQKDGT---------FD---LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 172 ~~~~~~~~~~~~~---------~d---~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
..+..++.+.... .| ++.+++.|+.. +.+++++|++|++++..|..+.|.+++++++++|++||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~ 248 (451)
T PRK07678 172 PGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWE---LSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGA 248 (451)
T ss_pred CCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCC
Confidence 1112222211110 12 23356666421 345899999999998875566788999999999999999
Q ss_pred eEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 240 PVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 240 ~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
++|+||+++++ ....+.+++. +.+++|++++ |+++++.. ++++
T Consensus 249 llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~-~~i~ 301 (451)
T PRK07678 249 LLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVK-KEIY 301 (451)
T ss_pred EEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEc-HHHH
Confidence 99999998744 2223445555 6677899986 77776654 4443
No 97
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.86 E-value=5.1e-21 Score=170.35 Aligned_cols=197 Identities=19% Similarity=0.188 Sum_probs=157.1
Q ss_pred eeeeec-cCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcC-CC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 67 RTVDIR-SDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG-KE--AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 67 ~~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g-~~--~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
.+++|+ |+|+.+++|.+.+++.+.......|. ++...++++.++++.| .+ .++..+|..+.+...+++++ .+||
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYP-d~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~~-~~gd 100 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYP-DPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFV-EPGD 100 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHHhhccCC-CCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHhh-cCCC
Confidence 467776 68888888999999987766556666 4568999999999998 54 34556666777788888877 6899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
.|++..+++....... +..|.+++.++..+ +.+|++.+.+++.+ ++++|++++||||| |..+
T Consensus 101 ~vl~~~Ptf~~Y~~~a---------~~~g~~~~~v~~~~-~~~d~~~~~~~~~~-------~~~lv~i~nPNNPT-G~~~ 162 (356)
T COG0079 101 TVLIPEPTFSMYEIAA---------QLAGAEVVKVPLKE-FRLDLDAILAAIRD-------KTKLVFLCNPNNPT-GTLL 162 (356)
T ss_pred EEEEcCCChHHHHHHH---------HhcCCeEEEecccc-cccCHHHHHHhhhc-------CCCEEEEeCCCCCC-CCCC
Confidence 9999888876554322 34599999999876 88999999999987 78999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCC-e-EEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVD-T-VMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~d-v-~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.++|+++.+.+.+ +.+|++||||..+. .+....+ + ++.||||.+|. .+.|++++++++++
T Consensus 163 ~~~~l~~l~~~~~~-~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~ 232 (356)
T COG0079 163 PREELRALLEALPE-GGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIA 232 (356)
T ss_pred CHHHHHHHHHhCCC-CcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHH
Confidence 99999999998888 99999999988222 2222344 4 49999997655 78899999998875
No 98
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=172.11 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=151.2
Q ss_pred CCeeeeeccCCcCCCc-HHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKPT-MEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a 132 (285)
+..+++|..+++.... +.+.+++.+.... ...|....+..+|++.+++++ |. + .+++++|+++|+..+
T Consensus 32 ~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~ 111 (403)
T PRK08636 32 GEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHL 111 (403)
T ss_pred CCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHH
Confidence 4567899888877653 3566666554332 356776667888999998885 42 3 468889899999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHH----HHHhcccccccCCceE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEM----EAKFSTADNIHCASTS 206 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l----~~~i~~~~~~~~~~~~ 206 (285)
+.+++ .+||.|++++++|....... ...|.+++.++.+ +++.+|++.+ ++++++ +..+++
T Consensus 112 ~~~l~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~----~~~~~~ 177 (403)
T PRK08636 112 VQAIT-NPGDVAIVPDPAYPIHSQAF---------ILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRE----SSPKPK 177 (403)
T ss_pred HHHhC-CCCCEEEEcCCCCcchHHHH---------HhcCCEEEEEeccccccCccChhhhhhHHHHHHhh----ccCCce
Confidence 99987 68999999998876544322 3448888888763 3356887755 555543 334789
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe--EEEecccccCc--ce
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT--VMFCLSKGLGA--PV 272 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv--~~~s~sK~l~~--p~ 272 (285)
+|++++|+||| |.+++.+++++|+++|++|++++|+||+|..+. .+....+. .+.|+||.++. .+
T Consensus 178 ~i~~~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR 256 (403)
T PRK08636 178 YVVVNFPHNPT-TATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWR 256 (403)
T ss_pred EEEEeCCCCCC-CccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccce
Confidence 99999999999 999999999999999999999999999987221 11112233 37899999853 78
Q ss_pred eEEeecCccccc
Q psy5413 273 GSILAGPEEFIQ 284 (285)
Q Consensus 273 gg~~~~~~~~i~ 284 (285)
.|++++++++++
T Consensus 257 iG~iv~~~~li~ 268 (403)
T PRK08636 257 VGFVVGNKKLVG 268 (403)
T ss_pred eeeeeCCHHHHH
Confidence 889998887764
No 99
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.86 E-value=6.7e-21 Score=173.90 Aligned_cols=198 Identities=19% Similarity=0.195 Sum_probs=148.1
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccC--C------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVG--D------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~--~------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|.++++-+ .+|+|++++.++... . ..++..+...+|++.+++++|.+.+++++||++|++.+++
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~ 123 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALS 123 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHH
Confidence 46789998876666 699999999887652 1 1223455789999999999999999999999999999999
Q ss_pred Hccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
++.. .+|+.|++.+.+|.++...... .+.+++.++. .|++++++.++.. ...++++|+++++
T Consensus 124 ~l~~~~~g~~I~~~~~~H~s~~~~~~~---------~g~~~~~~~~-----~d~~~l~~~l~~~---~~~~~~~v~~~~v 186 (406)
T PRK13393 124 TLGSRLPGCVILSDELNHASMIEGIRH---------SRAEKRIFRH-----NDPADLERKLSDL---DPHRPKLVAFESV 186 (406)
T ss_pred HhhcCCCCCEEEEccchhHHHHHHHHH---------cCCeEEEeCC-----CCHHHHHHHHHhc---cCCCCEEEEEcCC
Confidence 6542 2677777778888766432222 2555555553 3788888877541 1126789999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+|++ |.+.| +++|.++|++||+++|+||+|+ ++.. .....|+++.+++|++++ .||+++++++
T Consensus 187 ~~~~-G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~-~GG~~~~~~~ 261 (406)
T PRK13393 187 YSMD-GDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGV-MGGYITGSAA 261 (406)
T ss_pred CCCC-CchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcc-cCceeeCCHH
Confidence 9999 99999 9999999999999999999987 2210 112346778899999997 5788888776
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 262 ~~~ 264 (406)
T PRK13393 262 LCD 264 (406)
T ss_pred HHH
Confidence 543
No 100
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.2e-20 Score=171.01 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=149.3
Q ss_pred eeeeeccCCcCC-CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHc
Q psy5413 67 RTVDIRSDTISK-PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.+++|..+.+.. +.+.+.+++.+... ....|....+..+|++.++++++ .+.+++++|+++|+..++.++
T Consensus 30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 109 (384)
T PRK06348 30 DIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSI 109 (384)
T ss_pred CcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHh
Confidence 458888777665 34567665544332 34567766667889999998862 234689999999999999998
Q ss_pred cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+ .+|++|++++++|........ ..|.+++.++.. +++.+|++++++++++ ++++|++++|+
T Consensus 110 ~-~~gd~vlv~~p~y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~ 172 (384)
T PRK06348 110 L-DPGDEVIIHEPYFTPYKDQIE---------MVGGKPIILETYEEDGFQINVKKLEALITS-------KTKAIILNSPN 172 (384)
T ss_pred c-CCCCEEEEeCCCCcchHHHHH---------HcCCEEEEecCCcCcCCcCCHHHHHHhhCc-------CccEEEEeCCC
Confidence 7 689999999888754433222 337777777753 2445899999999876 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcc-cCC-eEEEecccccC--cceeEEeecCcc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCA-SVD-TVMFCLSKGLG--APVGSILAGPEE 281 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~-~~d-v~~~s~sK~l~--~p~gg~~~~~~~ 281 (285)
||| |.+++.+++++|+++|++||+++|+||+|..+. .+.. .-. +++.|+||.++ |.+.|+++++++
T Consensus 173 NPt-G~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~ 251 (384)
T PRK06348 173 NPT-GAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDY 251 (384)
T ss_pred CCC-CcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHH
Confidence 999 999999999999999999999999999987221 1111 112 44899999887 377888888877
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 252 ~~~ 254 (384)
T PRK06348 252 IIE 254 (384)
T ss_pred HHH
Confidence 654
No 101
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.4e-20 Score=170.36 Aligned_cols=200 Identities=18% Similarity=0.150 Sum_probs=152.3
Q ss_pred eeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHHc
Q psy5413 67 RTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 67 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.+++|..+.+..+ .+.+.+++.+.... ...|.......++++.+++++ | .+.+++++|+++++..++.++
T Consensus 25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l 104 (382)
T PRK06108 25 GVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL 104 (382)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh
Confidence 5688887776664 66899998876553 235776667788888888875 4 245688899999999999987
Q ss_pred cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+ ++|+.|++++++|..... .. ...|.+++.++.+. ++.+|++++++.+++ ++++|++++|
T Consensus 105 ~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-------~~~~i~l~~p 167 (382)
T PRK06108 105 V-GPGDEVVAVTPLWPNLVA---AP------KILGARVVCVPLDFGGGGWTLDLDRLLAAITP-------RTRALFINSP 167 (382)
T ss_pred c-CCCCEEEEeCCCccchHH---HH------HHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-------cceEEEEECC
Confidence 7 589999998887754432 22 34588888888743 245899999999876 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcc-c-CCeEEEecccccCc--ceeEEeec
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCA-S-VDTVMFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~-~-~dv~~~s~sK~l~~--p~gg~~~~ 278 (285)
+||| |.+++.+++++|+++|+++|+++|+||+|..+. .+.. . ..+++.|+||.++. .+.|++++
T Consensus 168 ~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~ 246 (382)
T PRK06108 168 NNPT-GWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVA 246 (382)
T ss_pred CCCC-CcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeC
Confidence 9999 899999999999999999999999999977321 1111 1 12458999998764 56688888
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 247 ~~~~~~ 252 (382)
T PRK06108 247 PPALGQ 252 (382)
T ss_pred CHHHHH
Confidence 877664
No 102
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.86 E-value=7.4e-21 Score=174.88 Aligned_cols=232 Identities=17% Similarity=0.197 Sum_probs=151.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC--C--Ccc
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--D--VYL 98 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~--~y~ 98 (285)
|..+.++.+.+.|+.. |++++||.++ +.++.+|+|.+++.+++... . ...
T Consensus 26 ~~~~~~~~G~~l~d~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~ 83 (433)
T PRK08117 26 NLPVVKGEGCYYYGVD----------------------GKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVI 83 (433)
T ss_pred CceEEeeeeeEEEeCC----------------------CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccccc
Confidence 3566677777777654 4555665544 34679999999999887531 1 112
Q ss_pred CChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccc-ccccccc----
Q psy5413 99 EDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQ-TSVYSQI---- 169 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~-~~~~~~~---- 169 (285)
.++...+|+++|++++ +.+.++|++|||+|++.|++++....|+. |+ +...||+.+.....+.. ...+...
T Consensus 84 ~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~ 163 (433)
T PRK08117 84 YYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPL 163 (433)
T ss_pred CCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCC
Confidence 4677899999999997 34567899999999999999987555543 43 36788987754322221 0111111
Q ss_pred -cceeeeeeecCCC---C-------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413 170 -GRVLMRGVTNQKD---G-------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238 (285)
Q Consensus 170 -~g~~~~~~~~~~~---~-------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g 238 (285)
.+...++.|.... . ..|++++++.++... +.+++++|++|++++..|....+.+++++|+++|++||
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g 241 (433)
T PRK08117 164 LGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQV--TPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHG 241 (433)
T ss_pred CCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhcc--CCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcC
Confidence 1222222221000 0 025667777765310 12379999999999988555678999999999999999
Q ss_pred CeEEEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413 239 IPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 239 i~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
+++|+||+|+++. ...+..++. +.+++|++++ |+|+++ ++++++
T Consensus 242 ~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G~pigav~-~~~~i~ 294 (433)
T PRK08117 242 ILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASGLPLSAVV-ASKELM 294 (433)
T ss_pred CEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCCCcceeEE-EcHHHH
Confidence 9999999988431 112333443 6899999987 677554 555554
No 103
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.86 E-value=9.9e-21 Score=172.17 Aligned_cols=163 Identities=21% Similarity=0.192 Sum_probs=132.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.++.++||++|+..++..++ ++||+|+++.+.|..+..... .. ...|.++..+
T Consensus 63 ~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~ll-~~Gd~Viv~~~~y~~t~~~~~~~~------~~~G~~v~~v 135 (403)
T PRK07503 63 SNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTLL-RPGDEVIVDQTLYGCTFAFLHHGL------GEFGVTVRHV 135 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEccCccchHHHHHHHHH------hhCCEEEEEe
Confidence 567899999999999999889999999999999998876 699999998776644322110 11 2458887777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|++|... ..+.
T Consensus 136 d~~-----d~~~l~~~i~~-------~tklV~le~p~NPt-G~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~~~~l~ 199 (403)
T PRK07503 136 DLT-----DPAALKAAISD-------KTRMVYFETPANPN-MRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYLQRPLE 199 (403)
T ss_pred CCC-----CHHHHHHhcCc-------cCcEEEEeCCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence 652 78999999987 78999999999999 89999 999999999999999999998722 1223
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ .+||++++++++++
T Consensus 200 ~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~ 232 (403)
T PRK07503 200 LGADLVVHSATKYLGGHGDITAGLVVGGKALAD 232 (403)
T ss_pred hCCCEEEccccccccCCCceeEEEEEcCHHHHH
Confidence 4789999999999997 45888888877654
No 104
>PRK07480 putative aminotransferase; Validated
Probab=99.86 E-value=1e-20 Score=174.30 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=149.9
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCc-cCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVY-LEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y-~~~~ 101 (285)
|..+.++.+.+.|+..++.+++....|+. .+.++.+|++.+++.+++... ..+ ..++
T Consensus 33 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~ 94 (456)
T PRK07480 33 SRVITRAEGVYLWDSEGNKILDGMAGLWC------------------VNVGYGRKELADAAARQMRELPYYNTFFKTTHP 94 (456)
T ss_pred CceEEeceeeEEEeCCCCEEEEccchHHH------------------hcCCCCCHHHHHHHHHHHHhcCCcccccccCCH
Confidence 45566666777776544444333333222 245779999999999887632 111 2467
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCe-EEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...+|.++|++.++ .++++|++|||+|++.|++++... +++. |+. ...||+.+.....+.....+...++
T Consensus 95 ~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~ 174 (456)
T PRK07480 95 PAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGD 174 (456)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccC
Confidence 78899999999874 467899999999999999998643 3343 443 5778987643222221111211112
Q ss_pred e---eeeeeecCCCC----CCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 172 V---LMRGVTNQKDG----TFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 172 ~---~~~~~~~~~~~----~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
. .+..++.+... ..+ ++++++.+.+. +.+++++|++|++++..|..+.|.+++++|+++|++
T Consensus 175 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~ 251 (456)
T PRK07480 175 LPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILEL---GADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRK 251 (456)
T ss_pred CCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHH
Confidence 1 11122211100 001 35666555321 334899999999999875556788999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
||+++|+||+++++ ....+..++. +.+++|.+++ |+|+++.+ +++
T Consensus 252 ~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~-~~i 306 (456)
T PRK07480 252 YDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVG-DRV 306 (456)
T ss_pred cCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEc-HHH
Confidence 99999999998743 2233445554 6777899986 78887765 444
No 105
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.86 E-value=1.5e-20 Score=171.50 Aligned_cols=235 Identities=16% Similarity=0.174 Sum_probs=154.8
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-CC---CccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-DD---VYLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~---~y~~~~ 101 (285)
.|..+.++.+.+.|+..++.+++.+..++.- +.++.||+|.+++.+++.. .. ....++
T Consensus 17 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~ 78 (412)
T TIGR02407 17 FPTVFEKAKGSTLWDEDGKEYIDFFAGAGAL------------------NYGHNNPKLKQALIDYLADDGIIHSLDMATE 78 (412)
T ss_pred CCceEEecccCEEEeCCCCEEEEcccchhhc------------------cCCCCCHHHHHHHHHHHhhccceeccccCcH
Confidence 4677788889999987666665555554432 3378999999999988763 11 112356
Q ss_pred hHHHHHHHHHhHc--C--CC-cEEE-cCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccccccccccce-
Q psy5413 102 TCKELQEKAAKLA--G--KE-AAIF-VPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV- 172 (285)
Q Consensus 102 ~~~~l~~~la~~~--g--~~-~~~~-~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~- 172 (285)
...+|.++|++.. + .. .++| ++|||+|++.|++++...+|+. |+. ...||+.+..+..+...+.+...++.
T Consensus 79 ~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 158 (412)
T TIGR02407 79 AKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVP 158 (412)
T ss_pred HHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCC
Confidence 6788888888874 2 22 3545 5999999999999998666654 443 57889887543332211222222221
Q ss_pred --eeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 173 --LMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 173 --~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
.+..+|.+... ..+++.+++.++++.. ..+++++|++|+.++.+|..+.|.+++++|+++|++||+++|+||++
T Consensus 159 ~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 237 (412)
T TIGR02407 159 LSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS-GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQ 237 (412)
T ss_pred CCCeEECCCCCccccchhHHHHHHHHHHhccC-CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh
Confidence 23334432111 1357788888864211 11378999999999988555789999999999999999999999998
Q ss_pred CCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 248 LPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 248 ~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
+++ ....+..++. +.+++|++++ |+|++++.+
T Consensus 238 tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~pigav~~~~ 279 (412)
T TIGR02407 238 AGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGLPLALTLIKP 279 (412)
T ss_pred hCCCccchhHHhcccCCCCCEEEechhccCCccceeEEEEch
Confidence 743 2222333333 5567899975 677666543
No 106
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.86 E-value=2e-20 Score=171.51 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=154.3
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC----CCCccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG----DDVYLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~----~~~y~~~~ 101 (285)
.|..+.++.+.+.|+..++.+++.++.++.- +.++.||++.+++.+++.. +..+..++
T Consensus 21 ~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~ 82 (425)
T PRK09264 21 FPVVFDKAKGSWLYDEDGKEYIDFFAGAGAL------------------NYGHNNPVLKQALIDYLQRDGITHGLDMHTT 82 (425)
T ss_pred CCccEEeeecCEEEeCCCCEeeecccchhhc------------------cCCCCCHHHHHHHHHHHHhcccccccccCcH
Confidence 3667778888999987766666655555442 3378999999999987763 11222356
Q ss_pred hHHHHHHHHHhHc----CCC-cEEE-cCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccccccccccce-
Q psy5413 102 TCKELQEKAAKLA----GKE-AAIF-VPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV- 172 (285)
Q Consensus 102 ~~~~l~~~la~~~----g~~-~~~~-~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~- 172 (285)
...+|.+++++.+ +.+ .++| ++|||+|++.|++++...+|+. |+. ...||+.+.....+...+.+...++.
T Consensus 83 ~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 162 (425)
T PRK09264 83 AKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVP 162 (425)
T ss_pred HHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCC
Confidence 6788889988864 233 3545 5899999999999998666654 333 57889887543322211122222221
Q ss_pred --eeeeeecCCCC---CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 173 --LMRGVTNQKDG---TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 173 --~~~~~~~~~~~---~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
.+..+|.+... ..|++++++.+++.. ...+++++|++|++++..|..+.|.++|++|+++|++||+++|+||++
T Consensus 163 ~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~ 241 (425)
T PRK09264 163 LNNVTRMPYDGYFGGDVDTLAYLEKLLEDSS-SGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQ 241 (425)
T ss_pred CCCeEEeCCCCccccchhHHHHHHHHHHhcc-CCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechh
Confidence 23334432110 137788888886521 112368999999999987445778999999999999999999999998
Q ss_pred CCh-----hhhcccCCeE--EEecccccCc---ceeEEeec
Q psy5413 248 LPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 248 ~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~ 278 (285)
+++ ....+..++. +.+++|.+++ |+|++++.
T Consensus 242 tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~pigav~~~ 282 (425)
T PRK09264 242 AGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLIK 282 (425)
T ss_pred hCCccccHHHHHhhcCCCCCEEEeccccCCCccceEEEEEc
Confidence 743 2222323222 4567899875 66766654
No 107
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.86 E-value=2e-20 Score=169.18 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=139.8
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC-C--CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD-D--VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~-~--~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++ +.++.+|++.+++.+++... . .....+...++++.+++..+.+.++|++||++|++.|++++.
T Consensus 28 G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~ 107 (377)
T PRK02936 28 GKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLAR 107 (377)
T ss_pred CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 5677888766 46779999999999887531 1 112345567777777777666778999999999999999865
Q ss_pred ccCCC-eEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 138 DRRDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 138 ~~~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
..+|+ +|++ ...+|+.+...........+...++ ..+..++. .|++++++.+.+ ++++|++|+
T Consensus 108 ~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~-------~~~~ii~e~ 175 (377)
T PRK02936 108 KHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPF-----NDIKALKEVMNE-------EVAAVMLEV 175 (377)
T ss_pred HhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCC-----CCHHHHHHhccC-------CeEEEEEec
Confidence 44554 3554 5678877654333321001100011 01112222 278999999976 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcc----cCCeEEEecccccCc-ceeEEeecCccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCA----SVDTVMFCLSKGLGA-PVGSILAGPEEF 282 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~----~~dv~~~s~sK~l~~-p~gg~~~~~~~~ 282 (285)
+++++|....+++++++|+++|++||+++|+||+|+++.. ... ..| +.++||.+++ ..+|++++++++
T Consensus 176 i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~d--i~t~sK~l~~G~~ig~v~~~~~~ 253 (377)
T PRK02936 176 VQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPD--IVTVAKGLGNGIPVGAMIGKKEL 253 (377)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCc--EEEEcccccCCCccEEEEEcHHH
Confidence 9998744557889999999999999999999999874311 111 224 4578999987 334566677766
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 254 ~~ 255 (377)
T PRK02936 254 GT 255 (377)
T ss_pred Hh
Confidence 54
No 108
>PRK06541 hypothetical protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=173.29 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=149.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCc-cCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVY-LEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y-~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++....|+. .+.++.+|++.+|+.+++... ..+ ..++.
T Consensus 35 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~ 96 (460)
T PRK06541 35 VPVIVRGEGCYIWDDRGKRYLDGLAGLFV------------------VQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPP 96 (460)
T ss_pred CceEEeCcccEEEeCCCCEEEECCccHHh------------------ccCCCCCHHHHHHHHHHHhhCcCccccccCCHH
Confidence 45566677777777554444444333332 245789999999999887632 111 24566
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc---C---CC-eEEe-cCCcceeeecccccccccccccccce
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR---R---DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~---~---g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..++.++|++... .++++|++|||+|++.|++++... . ++ +|+. ...||+.+.....+...+.+...++.
T Consensus 97 ~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~ 176 (460)
T PRK06541 97 AIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEP 176 (460)
T ss_pred HHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCC
Confidence 8889999999864 467899999999999999998743 2 22 3443 67889887543333211111111111
Q ss_pred ---eeeeeecCCC-----CCCC--------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 173 ---LMRGVTNQKD-----GTFD--------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 173 ---~~~~~~~~~~-----~~~d--------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
.+..+|.+.. +..+ ++.+++.++.. +.+++++|++|++++.+|....|.+++++|+++|++
T Consensus 177 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~ 253 (460)
T PRK06541 177 LVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE---GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDR 253 (460)
T ss_pred CCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc---CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHH
Confidence 1222222110 1112 36677777531 234799999999999984455669999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecC
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~ 279 (285)
||+++|+||+++++ ....++.++. +.+++|++++ |+|+++..+
T Consensus 254 ~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~ 306 (460)
T PRK06541 254 YDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASD 306 (460)
T ss_pred cCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcH
Confidence 99999999998733 2223333333 5568899986 788877654
No 109
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.86 E-value=7.5e-21 Score=171.47 Aligned_cols=180 Identities=16% Similarity=0.110 Sum_probs=137.0
Q ss_pred HHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc
Q psy5413 81 MEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG 158 (285)
Q Consensus 81 ~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~ 158 (285)
+++.++..+...+...|+ .+|...+||+.++++.+.+.+++++||++|+..++.+++ ++||+|++.++.|..+....
T Consensus 39 ~~~~~~~~~~~~~~~~Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all-~~GD~Vvv~~~~Y~~t~~l~ 117 (394)
T PRK09028 39 AEMRHAAKNRANGEMFYGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFL-KAGDHLLMVDSCYEPTRDLC 117 (394)
T ss_pred HHHHHHhccCccCCceecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHH
Confidence 355555443222223454 367788999999999998889999999999999998876 69999999877664443211
Q ss_pred -ccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc
Q psy5413 159 -GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237 (285)
Q Consensus 159 -~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~ 237 (285)
... ...|+++..++.. +.+.+++++++ +|++|++++|+||+ |.+.+ +++|+++||++
T Consensus 118 ~~~l------~~~Gi~v~~v~~~-----~~e~l~~~l~~-------~TklV~lespsNPt-g~v~d---l~~I~~la~~~ 175 (394)
T PRK09028 118 DKIL------KGFGIETTYYDPM-----IGEGIRELIRP-------NTKVLFLESPGSIT-MEVQD---VPTLSRIAHEH 175 (394)
T ss_pred HHhh------hhcceEEEEECCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHc
Confidence 111 2357776665432 56789998877 89999999999999 88888 99999999999
Q ss_pred CCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413 238 NIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 238 gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
|+++++|++|+.. ..+..++|+++.|.+||++| .++|+++.+++++
T Consensus 176 g~~lvvD~t~a~p~~~~Pl~~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~~ 227 (394)
T PRK09028 176 DIVVMLDNTWASPINSRPFEMGVDISIQAATKYIVGHSDVMLGTATANEKHW 227 (394)
T ss_pred CCEEEEECCccccccCCccccCceEEEEeCCeEecCCCCEEEEEEECCHHHH
Confidence 9999999999832 33456899999999999999 4677777776543
No 110
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.5e-20 Score=170.86 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=155.0
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~ 134 (285)
+.++++|..+++..+ ++++.+++.+.... ...|+......+|++.+++++ |. +..++++|+++|+..++.
T Consensus 30 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~ 109 (393)
T PRK05764 30 GRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFM 109 (393)
T ss_pred cCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHH
Confidence 346789998887775 56888887765542 345776667889999999987 22 346888999999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+++ ++|+.|++++++|..... .. ...|.+++.++.++ .+.+|++++++++++ ++++|++++
T Consensus 110 ~~~-~~gd~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~ 172 (393)
T PRK05764 110 ALL-DPGDEVIIPAPYWVSYPE---MV------KLAGGVPVFVPTGEENGFKLTVEQLEAAITP-------KTKALILNS 172 (393)
T ss_pred Hhc-CCCCEEEecCCCCcchHH---HH------HHcCCEEEEEecCcccCCcCCHHHHHHhhCc-------cceEEEEEC
Confidence 877 589999998887754432 22 24488888888753 346889999999976 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhh-cc--cCCeEEEecccccCc--ceeEEee
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEV-CA--SVDTVMFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~-~~--~~dv~~~s~sK~l~~--p~gg~~~ 277 (285)
|+||+ |.+++.+++++|+++|++||+++|+||+|..+ ..+ .+ ..++++.|+||.++. .+.|+++
T Consensus 173 p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~ 251 (393)
T PRK05764 173 PSNPT-GAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAA 251 (393)
T ss_pred CCCCC-CcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEe
Confidence 99999 99999999999999999999999999997721 111 11 134558999999875 4568888
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
+++++++
T Consensus 252 ~~~~~~~ 258 (393)
T PRK05764 252 GPKELIK 258 (393)
T ss_pred cCHHHHH
Confidence 8887654
No 111
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.86 E-value=1.5e-20 Score=172.22 Aligned_cols=238 Identities=14% Similarity=0.093 Sum_probs=153.6
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CC--ccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DV--YLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~--y~~~~ 101 (285)
.|..+.++++.+.|+..++.+++.+..++.- +.++.+|+|.+|+.+++... .. +..++
T Consensus 15 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~ 76 (420)
T TIGR00700 15 LPVFAARAEGAILEDVDGNRLIDFASGIAVL------------------NIGHSHPRVVDAVRTQVAEFTHTCFMVTPYE 76 (420)
T ss_pred CCeeEEeeeeeEEEeCCCCEEEECccCHHhc------------------cCCCCCHHHHHHHHHHHHhccCccccccCCh
Confidence 3667778888888886655554444443332 34779999999999887632 11 23456
Q ss_pred hHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccc-cccccccc---e
Q psy5413 102 TCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQT-SVYSQIGR---V 172 (285)
Q Consensus 102 ~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g---~ 172 (285)
...++.++|++... .+.++|++|||+|++.|++++....|+. |+ ....||+.+.....+... ..+...++ .
T Consensus 77 ~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 156 (420)
T TIGR00700 77 GYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAP 156 (420)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCC
Confidence 67889999998863 3578999999999999999988666654 33 367889887543332211 11111111 1
Q ss_pred eeeeeecCCCC-----------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413 173 LMRGVTNQKDG-----------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241 (285)
Q Consensus 173 ~~~~~~~~~~~-----------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l 241 (285)
.+..++.+... ..+++.+++.+.. ..+.+++++|++|+.++.+|..+.+.+++++|+++|++||+++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gill 234 (420)
T TIGR00700 157 EVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVI--DVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVF 234 (420)
T ss_pred CcEEeCCCccccccccccchhHHHHHHHHHHHHHh--hcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 12222221100 0125667776631 0134589999999999988555667888999999999999999
Q ss_pred EEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|+||+++++. ......++. +.+++|.+++ |+|+ +++++++++
T Consensus 235 I~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G~pig~-v~~~~~i~~ 285 (420)
T TIGR00700 235 IADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADGLPLSG-VTGRAEIMD 285 (420)
T ss_pred EEEecccCCcccchhHHHhhcCCCCCEEEeeccccCCcceEE-EEecHHHHh
Confidence 9999988432 122222222 5668999987 6655 555666653
No 112
>PRK09265 aminotransferase AlaT; Validated
Probab=99.86 E-value=2.6e-20 Score=169.92 Aligned_cols=195 Identities=12% Similarity=0.068 Sum_probs=146.5
Q ss_pred CCeeeeeccCCcCC----CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK----PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~----~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~~a 132 (285)
|+.+++|..+++.. +.+++.+++.+.......|+......+|++.+++++ +. +.+++++|+++++..+
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~ 111 (404)
T PRK09265 32 GHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMA 111 (404)
T ss_pred CCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHH
Confidence 56789998877632 566888887765444456776666789999999987 32 3357888888889999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ ++||+|++++++|....... ...|.+++.++.+. ++.+|++++++++++ ++++|++
T Consensus 112 ~~~~~-~~gd~Vlv~~p~y~~~~~~~---------~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l 174 (404)
T PRK09265 112 MQALL-NNGDEVLVPAPDYPLWTAAV---------SLSGGKPVHYLCDEEAGWFPDLDDIRSKITP-------RTKAIVI 174 (404)
T ss_pred HHHhC-CCCCEEEEeCCCCcChHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHhccc-------cceEEEE
Confidence 98876 68999999988876443321 23366777766532 456899999999876 7899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccCCeE-EEecccccCc--ceeEEee
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASVDTV-MFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~dv~-~~s~sK~l~~--p~gg~~~ 277 (285)
++|+||| |.+++.+++++|+++|++||+++|+||+|..+ ..+.....++ +.|+||.++. .+.|+++
T Consensus 175 ~~P~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v 253 (404)
T PRK09265 175 INPNNPT-GAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMV 253 (404)
T ss_pred ECCCCCC-CcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEE
Confidence 9999999 99999999999999999999999999997621 1111222344 7999999854 5666776
No 113
>PRK08912 hypothetical protein; Provisional
Probab=99.86 E-value=1.5e-20 Score=170.62 Aligned_cols=201 Identities=14% Similarity=0.105 Sum_probs=153.3
Q ss_pred CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----C----CC-cEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----G----KE-AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g----~~-~~~~~~~Gs~a~~~al~ 134 (285)
...++|..+.+..+ ++.+.+++.+.... ...|....+..++++.+++++ | .+ .+++++|+++++..++.
T Consensus 26 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 105 (387)
T PRK08912 26 HGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALL 105 (387)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHH
Confidence 35688888777764 45777777665432 355776666788999999875 3 23 56899999999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
.++ ++||+|++++++|...... . ...|.+++.++.++ ++.+|++++++.+.+ ++++|++++|
T Consensus 106 ~~~-~~gd~Vlv~~p~y~~~~~~---~------~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p 168 (387)
T PRK08912 106 ALV-EPGDEVVLFQPLYDAYLPL---I------RRAGGVPRLVRLEPPHWRLPRAALAAAFSP-------RTKAVLLNNP 168 (387)
T ss_pred Hhc-CCCCEEEEeCCCchhhHHH---H------HHcCCEEEEEecCcccCcCCHHHHHHHhCc-------cceEEEEeCC
Confidence 877 5899999998887544332 2 34488888888743 567899999999876 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc--ccCCeEEEecccccCc--ceeEEeecC
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC--ASVDTVMFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~--~~~dv~~~s~sK~l~~--p~gg~~~~~ 279 (285)
+||| |.+++.+++++|+++|++||+++|+||+|..+ .... ...++++.|+||.++. .+.|+++.+
T Consensus 169 ~NPt-G~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~ 247 (387)
T PRK08912 169 LNPA-GKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAA 247 (387)
T ss_pred CCCc-CcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecC
Confidence 9999 99999999999999999999999999997511 1111 1234669999999874 667888888
Q ss_pred ccccc
Q psy5413 280 EEFIQ 284 (285)
Q Consensus 280 ~~~i~ 284 (285)
+++++
T Consensus 248 ~~~~~ 252 (387)
T PRK08912 248 PPLLR 252 (387)
T ss_pred HHHHH
Confidence 77654
No 114
>PRK07683 aminotransferase A; Validated
Probab=99.86 E-value=2.7e-20 Score=168.88 Aligned_cols=201 Identities=15% Similarity=0.068 Sum_probs=154.3
Q ss_pred CeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~al~ 134 (285)
+++++|..+.+..+ ++.+.+++.+.... ...|.+.+...+|++.+++++ |. + .+++++|+++|+..++.
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~ 107 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFR 107 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 45688988877654 56888888876653 346766677889999999987 32 3 56899999999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ ++|+.|+++.+.+....... ...|.+++.++.++ ++.+|.+++++.+++ ++++|++++|
T Consensus 108 ~l~-~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~i~i~~p 170 (387)
T PRK07683 108 TIL-EPGTEVILPAPIYPGYEPII---------RLCGAKPVFIDTRSTGFRLTAEALENAITE-------KTRCVVLPYP 170 (387)
T ss_pred HhC-CCCCEEEEcCCCccchHHHH---------HHcCCEEEEeecCcccCCCCHHHHHHhcCc-------CceEEEEeCC
Confidence 877 58999999887665433221 23488888887643 455788999999876 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhccc-----CCeEEEecccccCc--ceeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCAS-----VDTVMFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~-----~dv~~~s~sK~l~~--p~gg~~~~~~ 280 (285)
+||| |.+++.+++++|+++|+++|+++|+||+|..+. .+... -.+++.|+||.++. .+.|++++++
T Consensus 171 ~NPt-G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~ 249 (387)
T PRK07683 171 SNPT-GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPS 249 (387)
T ss_pred CCCC-CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCH
Confidence 9999 999999999999999999999999999987221 11111 12459999999874 6778898888
Q ss_pred cccc
Q psy5413 281 EFIQ 284 (285)
Q Consensus 281 ~~i~ 284 (285)
++++
T Consensus 250 ~l~~ 253 (387)
T PRK07683 250 YLAK 253 (387)
T ss_pred HHHH
Confidence 7664
No 115
>PRK06105 aminotransferase; Provisional
Probab=99.85 E-value=1.4e-20 Score=173.67 Aligned_cols=235 Identities=14% Similarity=0.092 Sum_probs=152.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC---Cc--cCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD---VY--LEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~---~y--~~~~ 101 (285)
|..+.++.+.+.|+..++.+++.+..|+.. +.++.||++.+|+.+++.... .+ ..++
T Consensus 31 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~ 92 (460)
T PRK06105 31 PLVIERGEGIYVYDDAGKRYIEGMAGLWSV------------------ALGFSEQRLVEAAARQMKKLPFYHTFSHKSHG 92 (460)
T ss_pred CceEEeeeEEEEEECCCCEEEEcchhHHhc------------------cCCCCCHHHHHHHHHHHHhCCCeecccccCCH
Confidence 556667777777775554444444433332 457899999999998876421 22 2456
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...++.++|++++. .++++|++|||+|+++|++++... +++ +|+. ...||+.+.....+.....+.+.++
T Consensus 93 ~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~ 172 (460)
T PRK06105 93 PVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFD 172 (460)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccC
Confidence 68899999999874 467899999999999999997422 233 3443 6788988754322221111212222
Q ss_pred e---eeeeeecCCCCC-------------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413 172 V---LMRGVTNQKDGT-------------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235 (285)
Q Consensus 172 ~---~~~~~~~~~~~~-------------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~ 235 (285)
. .+..++.+.... .+++++++++... +.+++++|++|+.++..|....|++++++|+++|+
T Consensus 173 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~---~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~ 249 (460)
T PRK06105 173 LPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAE---GPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLR 249 (460)
T ss_pred CCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHc---CCCceEEEEEccccCCCCCccCCHHHHHHHHHHHH
Confidence 1 122222211100 1246677777431 23479999999999888556678999999999999
Q ss_pred HcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 236 EHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 236 ~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
+||+++|+||+++++ ....+..++. +.+++|.+++ |.++++.. ++++
T Consensus 250 ~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~-~~i~ 306 (460)
T PRK06105 250 KYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMN-EKVY 306 (460)
T ss_pred HcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEc-HHHH
Confidence 999999999998743 2233445555 6788899976 67766554 4443
No 116
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.85 E-value=1.3e-20 Score=171.52 Aligned_cols=200 Identities=18% Similarity=0.168 Sum_probs=153.4
Q ss_pred CCeeeeeccCCcCC--CcHHHHHHHHhcccCC--------CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK--PTMEMKNYMFNCEVGD--------DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~~--------~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
++++++|.++++-+ .+|+++++..+..... ..++....+.+||+.|++++|.+.++++++|..||..++.
T Consensus 101 ~r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~ 180 (476)
T PLN02955 101 FKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMV 180 (476)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHH
Confidence 46899999887776 7889998877665421 1344556788999999999999999999999999999998
Q ss_pred Hcc-------------ccCCCeEEecCCcceeeeccccccccccccccc-ceeeeeeecCCCCCCCHHHHHHHhcccccc
Q psy5413 135 THC-------------DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIG-RVLMRGVTNQKDGTFDLDEMEAKFSTADNI 200 (285)
Q Consensus 135 ~~~-------------~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~ 200 (285)
++. ..+++.|+++...|.+......++ ... +.+++.++. .|+++|+++++..
T Consensus 181 aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls------~~~~~a~~~~f~H-----ND~~~Le~~L~~~--- 246 (476)
T PLN02955 181 AIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLA------ERQGNVEVFVYRH-----CDMYHLNSLLSSC--- 246 (476)
T ss_pred HHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhc------cccCCceEEEeCC-----CCHHHHHHHHHhC---
Confidence 862 123455777888898776544443 221 345555554 4999999999763
Q ss_pred cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--------hhh---hcccCCeEEEeccccc
Q psy5413 201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--------LAE---VCASVDTVMFCLSKGL 268 (285)
Q Consensus 201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--------~~~---~~~~~dv~~~s~sK~l 268 (285)
.++.++|+++++.++. |.+.| |++|.++|++||++||+||+|+ + ... +....|+++.|++|.+
T Consensus 247 -~~~~~~Vv~EgV~Smd-Gdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~ 321 (476)
T PLN02955 247 -KMKRKVVVTDSLFSMD-GDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA 321 (476)
T ss_pred -CCCceEEEEeCCCCCC-CCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch
Confidence 2356899999999998 99999 9999999999999999999988 1 111 1235678899999999
Q ss_pred CcceeEEeecCccccc
Q psy5413 269 GAPVGSILAGPEEFIQ 284 (285)
Q Consensus 269 ~~p~gg~~~~~~~~i~ 284 (285)
|. .||++++++++++
T Consensus 322 G~-~GGfi~gs~~~~~ 336 (476)
T PLN02955 322 GC-HGGFIACSKKWKQ 336 (476)
T ss_pred hc-cCceeecHHHHHH
Confidence 86 7899999886553
No 117
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=1.2e-20 Score=172.67 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=155.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----CccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.+..++.- +.++.+|+|.+|+.+++.... ....++.
T Consensus 23 p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~ 84 (425)
T PRK07495 23 QIYADRAENAEIWDKEGRRYIDFAAGIAVV------------------NTGHRHPRVIAAVKAQLDRFTHTCHQVVPYEN 84 (425)
T ss_pred CeeEEeeeecEEEeCCCCEEEEccccHHhh------------------ccCCCCHHHHHHHHHHHhhccCcccCccCCHH
Confidence 567778888888886655554444444331 348899999999998876321 1234566
Q ss_pred HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-ccccccc-----c
Q psy5413 103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIG-----R 171 (285)
Q Consensus 103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~-----g 171 (285)
..++.+++++.+.. ++++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...+ +
T Consensus 85 ~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~ 164 (425)
T PRK07495 85 YVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPD 164 (425)
T ss_pred HHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCC
Confidence 88899999998742 578999999999999999987656653 443 67889887433222111 1122211 2
Q ss_pred eeeeeeecCCCCC---CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 172 VLMRGVTNQKDGT---FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 172 ~~~~~~~~~~~~~---~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
...+++|....+. .+++++++.++.. .+.+++++|++|+.++.+|....|.+++++|+++|++||+++|+||+++
T Consensus 165 ~~~~~~~~~~~g~~~~~~~~~l~~~~~~~--~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t 242 (425)
T PRK07495 165 VYHVPFPVELHGVSVEQSLAALDKLFKAD--VDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT 242 (425)
T ss_pred eEEecCCcccccccHHHHHHHHHHHHHhc--cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 2222333211111 1245567666421 1234799999999988763366899999999999999999999999988
Q ss_pred Chh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 249 PLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 249 ~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
++. ...+..++. +.+++|.+++ |+|+ +++++++++
T Consensus 243 G~gr~G~~~a~~~~gv~pDi~tlsK~l~~G~piga-v~~~~~i~~ 286 (425)
T PRK07495 243 GFARTGKLFAMEHHEVAADLTTMAKGLAGGFPLAA-VTGRAEIMD 286 (425)
T ss_pred cCCcCCCceeecccCCCCCEEeehhhhcCCccceE-EEEcHHHHh
Confidence 432 122333444 7888999987 6655 555566543
No 118
>PLN02368 alanine transaminase
Probab=99.85 E-value=1.3e-20 Score=171.33 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=140.5
Q ss_pred CcHHHHHHHHhccc---CCCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413 79 PTMEMKNYMFNCEV---GDDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147 (285)
Q Consensus 79 ~~~~v~~a~~~~~~---~~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~ 147 (285)
+.+.+.+++..... +...|+...+..+|++.+++++ |. +.+++++|+++++..++.+++..+||+|+++
T Consensus 82 p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~ 161 (407)
T PLN02368 82 PADAIARAKHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVP 161 (407)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEe
Confidence 34455555544221 1346776667788999999986 42 3457888889999999988763589999999
Q ss_pred CCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~ 225 (285)
++++....... ...|.+++.++..+ ++.+|++++++.+++.. ....+++++++++|+||| |.+++.+
T Consensus 162 ~P~Y~~y~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~-~~~~~~k~l~l~nP~NPT-G~v~s~e 230 (407)
T PLN02368 162 VPQYPLYSATI---------SLLGGTLVPYYLEESENWGLDVNNLRQSVAQAR-SKGITVRAMVIINPGNPT-GQCLSEA 230 (407)
T ss_pred CCCCccHHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEECCCCCC-CccCCHH
Confidence 88876554322 23478888888653 36789999999986411 112268999999999999 9999999
Q ss_pred HHHHHHHHHHHcCCeEEEeCccCChh--------h---hcc--------cCCeE-EEeccccc-C--cceeEEee---cC
Q psy5413 226 WLRELKARCQEHNIPVHMDGARLPLA--------E---VCA--------SVDTV-MFCLSKGL-G--APVGSILA---GP 279 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea~~~~~--------~---~~~--------~~dv~-~~s~sK~l-~--~p~gg~~~---~~ 279 (285)
++++|+++|++||++||+||+|..+. . +.. ...++ +.|+||.+ + |.+.|+++ ++
T Consensus 231 ~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~ 310 (407)
T PLN02368 231 NLREILKFCYQERLVLLGDEVYQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIP 310 (407)
T ss_pred HHHHHHHHHHHcCCEEEEEccccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCC
Confidence 99999999999999999999987221 1 100 11244 89999987 3 57888887 46
Q ss_pred ccccc
Q psy5413 280 EEFIQ 284 (285)
Q Consensus 280 ~~~i~ 284 (285)
+++++
T Consensus 311 ~~li~ 315 (407)
T PLN02368 311 PKTVE 315 (407)
T ss_pred HHHHH
Confidence 66654
No 119
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.85 E-value=1.1e-20 Score=172.80 Aligned_cols=224 Identities=11% Similarity=0.087 Sum_probs=146.8
Q ss_pred cccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccC--CCC--ccCC
Q psy5413 29 LVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVG--DDV--YLED 100 (285)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~--~~~--y~~~ 100 (285)
.+.++.+.+.|+.. |++++||.++ +.++.+|+|.+|+.+++.. +.. ...+
T Consensus 29 ~i~~a~G~~l~D~d----------------------G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~ 86 (429)
T PRK06173 29 PVERADGVMITLKD----------------------GRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTH 86 (429)
T ss_pred eEEeceeeEEEcCC----------------------CCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCC
Confidence 35666777777654 4555565443 4578999999999988764 211 2246
Q ss_pred hhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeeccccccc-ccccccc
Q psy5413 101 PTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQ-TSVYSQI 169 (285)
Q Consensus 101 ~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~-~~~~~~~ 169 (285)
+...+|.+++++... .++++|++|||+|++.|++++... +++ +|+. ...||+.+.....+.. ...+...
T Consensus 87 ~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~ 166 (429)
T PRK06173 87 EPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGL 166 (429)
T ss_pred HHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhc
Confidence 778899999999873 567899999999999999998743 333 3443 5788987654322211 0112111
Q ss_pred cc-----eeeeeeecCCC----CCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 170 GR-----VLMRGVTNQKD----GTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 170 ~g-----~~~~~~~~~~~----~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
++ ...++.|.... ...+++.+++.|+. +++++++|++|+. ++..|..+.|++++++|+++|++||+
T Consensus 167 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~----~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~ 242 (429)
T PRK06173 167 FNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQ----KGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGV 242 (429)
T ss_pred ccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHh----CCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCC
Confidence 11 11122221110 01246778888864 3458999999996 99875566889999999999999999
Q ss_pred eEEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeec
Q psy5413 240 PVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 240 ~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~ 278 (285)
++|+||+++++. ...++.++. +.+++|.+++ |.++++..
T Consensus 243 llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~ 291 (429)
T PRK06173 243 LLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITT 291 (429)
T ss_pred eEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEec
Confidence 999999988432 122333332 4458899976 56665543
No 120
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.85 E-value=5.8e-21 Score=170.67 Aligned_cols=199 Identities=17% Similarity=0.158 Sum_probs=149.8
Q ss_pred CeeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 66 IRTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 66 ~~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
.++++|..+. +..++|++++++.+.......|+. +...++|+.++++++.+ .+++++|+++++..++.+++ ++|+
T Consensus 19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l~-~~gd 96 (346)
T TIGR01141 19 KEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPD-PDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFL-EPGD 96 (346)
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCC-CCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence 4689998655 444778999999887544445653 33589999999999854 46888888999988888876 5899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|++++++|..... .. ...|.+++.++.++++.+|++++++++.+ ++++|++++|+||+ |.++
T Consensus 97 ~v~~~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p~Npt-G~~~ 159 (346)
T TIGR01141 97 AVLVPPPTYSMYEI---SA------KIHGAEVVKVPLDEDGQLDLEDILVAIDD-------KPKLVFLCSPNNPT-GNLL 159 (346)
T ss_pred EEEEcCCCHHHHHH---HH------HHcCCeEEEeccCCCCCCCHHHHHHhcCC-------CCCEEEEeCCCCCC-CCCC
Confidence 99998877643221 22 34588899998877777999999998866 78999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh------hh-cccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EV-CASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~-~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.++++++++.|+ +|+++|+|++|..+. .. ....+ +++.|+||+++. ++.|+++.++++++
T Consensus 160 ~~~~~~~l~~~~~-~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 230 (346)
T TIGR01141 160 SRSDIEAVLERTP-EDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIID 230 (346)
T ss_pred CHHHHHHHHHhCC-CCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHH
Confidence 9777777777665 699999999977221 11 11223 448999999964 56688888877654
No 121
>PRK09105 putative aminotransferase; Provisional
Probab=99.85 E-value=6.8e-21 Score=171.72 Aligned_cols=198 Identities=16% Similarity=0.158 Sum_probs=151.4
Q ss_pred CeeeeeccCCcC-CCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 66 IRTVDIRSDTIS-KPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
+.+++|..+.+. .++|.+.+++.+.......|... ...+|++.+++++|.+ .+++++|+++++..++.+++ .+||
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l~-~~gd 120 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYDLE-LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAFT-SPTA 120 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHHc-CCCC
Confidence 456788765554 46889999988765433456643 4889999999998764 46889999999999999887 5899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|++++++|...... . ...|.+++.++..+++.+|++++++. .+ ++++|++++|+||| |.++
T Consensus 121 ~Vli~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l~~~-~~-------~~~~v~l~nP~NPT-G~~~ 182 (370)
T PRK09105 121 GLVTADPTYEAGWRA---A------DAQGAPVAKVPLRADGAHDVKAMLAA-DP-------NAGLIYICNPNNPT-GTVT 182 (370)
T ss_pred EEEEeCCChHHHHHH---H------HHcCCeEEEecCCCCCCCCHHHHHhc-CC-------CCCEEEEeCCCCCC-CcCc
Confidence 999999887655432 2 34588999988866677899999876 34 67899999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCCh------hhhc-ccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPL------AEVC-ASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~-~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.++++++++.| ++|+++|+||+|..+ ..+. .+.+++ +.|+||.+|. .+.|++++++++++
T Consensus 183 ~~~~l~~l~~~~-~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~ 253 (370)
T PRK09105 183 PRADIEWLLANK-PAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLA 253 (370)
T ss_pred CHHHHHHHHHhC-CCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHH
Confidence 999999999875 469999999998622 1121 234555 8999999875 56788888887664
No 122
>KOG1549|consensus
Probab=99.85 E-value=1.5e-20 Score=165.67 Aligned_cols=198 Identities=18% Similarity=0.223 Sum_probs=159.4
Q ss_pred CCeeeeeccCCcCCCcHHHHHHHHhcccC-----CCC-ccC--ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKPTMEMKNYMFNCEVG-----DDV-YLE--DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~-y~~--~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~ 134 (285)
+.+.+.+.++..+..+++|++++.+.... +.. |+. ....++.|+.+|++++++. ++|++++|+++.++++
T Consensus 41 ~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~ 120 (428)
T KOG1549|consen 41 GTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNNLVLK 120 (428)
T ss_pred CCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHH
Confidence 34567777777777899999998876542 334 543 2348899999999998754 6999999999999999
Q ss_pred HccccCCC----eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 135 THCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 135 ~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
......++ +||+.+..|.+........ +..|..+..+|.+.++..|++.+++.|++ +|++|.+
T Consensus 121 ~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l------~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~-------~T~lv~I 187 (428)
T KOG1549|consen 121 GVARFFGDKTKKHIITLQTEHPCVLDSCRAL------QEEGLEVTYLPVEDSGLVDISKLREAIRS-------KTRLVSI 187 (428)
T ss_pred HhhccccccccceEEEecccCcchhHHHHHH------HhcCeEEEEeccCccccccHHHHHHhcCC-------CceEEEE
Confidence 98765566 7888888887765544333 34578888888877888999999999999 9999999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecC
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGP 279 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~ 279 (285)
..++|.. |.+.| ++||..+|+++|+.+++|.+|+ + +..-..++|.++++.|||+|.|-.|++..+
T Consensus 188 ~~Vnn~~-gv~~P---v~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr 256 (428)
T KOG1549|consen 188 MHVNNEI-GVLQP---VKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVR 256 (428)
T ss_pred EecccCc-ccccc---HHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEc
Confidence 9999999 99999 9999999999999999999988 3 333345899999999999999634555443
No 123
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.85 E-value=1.9e-20 Score=169.31 Aligned_cols=163 Identities=21% Similarity=0.244 Sum_probs=132.1
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|+++...|..+.... ... ...|.++..+
T Consensus 52 ~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~~~~t~~~~~~~~------~~~g~~v~~v 124 (380)
T TIGR01325 52 ANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTLL-QAGDHVVASRSLFGSTVGFISEIL------PRFGIEVSFV 124 (380)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEecCCcchHHHHHHHHH------HHhCCEEEEE
Confidence 467799999999999999989999999999999998876 68999998877665432211 111 3457777777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|++++.. ..+.
T Consensus 125 ~~~-----d~~~l~~~i~~-------~tklV~le~p~np~-g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~~pl~ 188 (380)
T TIGR01325 125 DPT-----DLNAWEAAVKP-------NTKLVFVETPSNPL-GELVD---IAALAELAHAIGALLVVDNVFATPVLQQPLK 188 (380)
T ss_pred CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence 652 78999999876 78999999999999 89999 999999999999999999998722 2233
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ .+||++++++++++
T Consensus 189 ~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~ 221 (380)
T TIGR01325 189 LGADVVVYSATKHIDGQGRVMGGVIAGSEELMA 221 (380)
T ss_pred hCCCEEEeeccceecCCCCeEEEEEEeCHHHHH
Confidence 4789999999999987 46788888877654
No 124
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.85 E-value=2.9e-20 Score=169.49 Aligned_cols=197 Identities=14% Similarity=0.099 Sum_probs=150.1
Q ss_pred CCeeeeeccCCcC-----CCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhHcCC-------CcEEEcCChHHHHH
Q psy5413 65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKLAGK-------EAAIFVPSGTMGNL 130 (285)
Q Consensus 65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g~-------~~~~~~~~Gs~a~~ 130 (285)
++.+++|..+.+. .+.+.+.+++.+..... ..|++.....++++.++++++. +.+++++|+++++.
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~ 109 (401)
T TIGR01264 30 EKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIE 109 (401)
T ss_pred CCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHH
Confidence 3567888887764 46778999887765532 3576677788999999999862 34688999999999
Q ss_pred HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEE
Q psy5413 131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
.++.+++ ++|++|+++++++..... .. ...|.+++.++... ++.+|++.+++.+++ ++++|
T Consensus 110 ~~~~~l~-~~gd~v~i~~P~y~~~~~---~~------~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v 172 (401)
T TIGR01264 110 MCIAALA-NAGQNILVPRPGFPLYET---LA------ESMGIEVKLYNLLPDKSWEIDLKQLESLIDE-------KTAAL 172 (401)
T ss_pred HHHHHhC-CCCCEEEEeCCCChhHHH---HH------HHcCCEEEEeecCCccCCCCCHHHHHHHhcc-------CceEE
Confidence 9999887 589999998887644332 22 34477887776532 457899999998876 67999
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCe-EEEecccccCc--ceeEE
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDT-VMFCLSKGLGA--PVGSI 275 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv-~~~s~sK~l~~--p~gg~ 275 (285)
++++|+||| |.+++.+++++|+++|+++|+++|+||+|..+. .+.....+ ++.||||.++. .+.|+
T Consensus 173 ~~~~p~NPt-G~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ 251 (401)
T TIGR01264 173 IVNNPSNPC-GSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGW 251 (401)
T ss_pred EEcCCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEE
Confidence 999999999 899999999999999999999999999987221 11122224 48999997544 67777
Q ss_pred eecC
Q psy5413 276 LAGP 279 (285)
Q Consensus 276 ~~~~ 279 (285)
++..
T Consensus 252 iv~~ 255 (401)
T TIGR01264 252 IIIH 255 (401)
T ss_pred EEec
Confidence 7754
No 125
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.85 E-value=1.3e-20 Score=172.90 Aligned_cols=210 Identities=17% Similarity=0.090 Sum_probs=140.4
Q ss_pred CCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCcc-CChhHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccc
Q psy5413 65 NIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYL-EDPTCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCD 138 (285)
Q Consensus 65 ~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~ 138 (285)
|++++||.++. .++++|+|.+++.+++.....|. .++...+|+++|++++. .+.++|++|||+|++.|++++..
T Consensus 47 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~ 126 (423)
T TIGR00713 47 GNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTSYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARG 126 (423)
T ss_pred CCEEEEccccccccccCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHH
Confidence 56677776543 35789999999998887533343 56678999999999875 45789999999999999998765
Q ss_pred cCC-CeEEe-cCCcceeeeccccccc---cc----ccc---cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413 139 RRD-SEIIV-GDCSHIMLWEQGGASQ---TS----VYS---QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 139 ~~g-~~vi~-~~~~h~~~~~~~~~~~---~~----~~~---~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
..| ++|+. ...||+.+.....++. .. ... ...+...+.++. .|++++++.+++ +.++++
T Consensus 127 ~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~----~~~~~a 197 (423)
T TIGR00713 127 YTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEEVFEE----YGEEIA 197 (423)
T ss_pred hhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHHHHHH----cCCcEE
Confidence 444 34554 4567876543332210 00 000 000111222221 389999999974 233799
Q ss_pred EEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc-ceeEEeec
Q psy5413 207 LVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA-PVGSILAG 278 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~-p~gg~~~~ 278 (285)
+|++++.++.+ |.+.+ .+++++|+++|++||+++|+||+|+++. ......++. +.+++|.+++ ...|++++
T Consensus 198 avi~ep~~~~~-G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~t~sK~l~~G~pig~v~~ 276 (423)
T TIGR00713 198 GVIVEPVAGNM-GVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLTTLGKIIGGGLPVGAFGG 276 (423)
T ss_pred EEEEeCCCCCC-CCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchhhhhhhhcCCCceeeeeE
Confidence 99999866666 66666 6999999999999999999999988442 122222222 4578999986 33455666
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 277 ~~~i~~ 282 (423)
T TIGR00713 277 RREIME 282 (423)
T ss_pred HHHHHH
Confidence 666553
No 126
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.85 E-value=1.7e-20 Score=169.24 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=146.7
Q ss_pred CcHHHHHHHHhcccCC--CCc-------cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 79 PTMEMKNYMFNCEVGD--DVY-------LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~--~~y-------~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
....+.+++.+...+. ..+ +..+...++++.+++++|.+.++++++|++++..++.+++ ++|+.|+++..
T Consensus 20 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l~-~~gd~Vl~~~~ 98 (370)
T TIGR02539 20 LTEAARKALVEFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHALC-KEGDWVVLDGL 98 (370)
T ss_pred CcHHHHHHHHHHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHhh-CCCCEEEECCc
Confidence 4667777777665431 111 1234578889999999999999899999999999999987 68999999888
Q ss_pred cceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL 227 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l 227 (285)
.|.+.+... ...|.+++.++.. +++.+|+++|++++++....+..++++|++++|+|++ |.+.| +
T Consensus 99 ~h~s~~~~~---------~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~-G~~~~---l 165 (370)
T TIGR02539 99 AHYTSYVAA---------ERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEY-GNLPD---A 165 (370)
T ss_pred ccHHHHHHH---------HHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCC-ccccC---H
Confidence 887665422 2458888888864 2467899999999964211112267899999999999 89999 9
Q ss_pred HHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413 228 RELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 228 ~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
++|.++|+++|+++|+||+|+ +. .....+.|+++.|+||++++ ...|++++++++++
T Consensus 166 ~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~ 227 (370)
T TIGR02539 166 GKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWED 227 (370)
T ss_pred HHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHh
Confidence 999999999999999999998 22 22234689999999999986 33578888887765
No 127
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.85 E-value=2.5e-20 Score=169.63 Aligned_cols=228 Identities=18% Similarity=0.192 Sum_probs=149.5
Q ss_pred CCCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCC---ccCCh
Q psy5413 25 PTPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDV---YLEDP 101 (285)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~---y~~~~ 101 (285)
+.|..+.++.+.+.|+..++.+++.+..++.. +.++.||++.+++.+++..... ...++
T Consensus 21 ~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~ 82 (408)
T PRK04612 21 PRQVVLERGQGSRVWDDQGREYLDLAAGIAVC------------------GLGHNDPDLVAALTEQAGKLWHTSNVFYSA 82 (408)
T ss_pred CCCceEEEeeeCEEEECCCCEEEEcCccHhhc------------------cCCCCCHHHHHHHHHHHHhccccccccCCH
Confidence 33566777888888886555444444333321 4478999999999988763211 11345
Q ss_pred hHHHHHHHHHhHcC-CCcEEEcCChHHHHHHHHHHcccc---CC----C-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDR---RD----S-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~---~g----~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...++.++|++..+ .+.++|++|||+|++.|++++... +| + +|+. ...||+.+.........+.+...++
T Consensus 83 ~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~ 162 (408)
T PRK04612 83 PPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYE 162 (408)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCC
Confidence 57788999988764 467899999999999999998742 12 3 3443 5778987754322221122222111
Q ss_pred e---eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 172 V---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 172 ~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
. .+..++. .|++.+++.+.. .++++|++++.++.+ |.+. +.+++++|+++|++||+++|+||+|
T Consensus 163 ~~~~~~~~~~~-----~d~~~l~~~~~~------~~~aavi~eP~~~~g-g~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 230 (408)
T PRK04612 163 PLPGGFRYVDF-----NDVEALEAAMAG------GDVAAVMLEPIQGEG-GVMPAAPGFLARVRALCDQHDALLVLDEIQ 230 (408)
T ss_pred CCCCCceEcCC-----CCHHHHHHhhCC------CCEEEEEECCccCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 1 1111221 288999988853 278999999988765 5554 4689999999999999999999998
Q ss_pred CChh-----hhcccCCe--EEEecccccCc--ceeEEeecCcccc
Q psy5413 248 LPLA-----EVCASVDT--VMFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 248 ~~~~-----~~~~~~dv--~~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
+++. ......++ -+.+++|.+++ |+|+++++ ++++
T Consensus 231 tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~-~~~~ 274 (408)
T PRK04612 231 CGMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAG-PKVA 274 (408)
T ss_pred cCCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEEC-HHHH
Confidence 8431 11122233 37888999987 78876655 4443
No 128
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.85 E-value=2.9e-20 Score=168.81 Aligned_cols=162 Identities=15% Similarity=0.183 Sum_probs=130.5
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.+++++|.+.++.+++|+.|+..++.+.+ ++||+|+++++.|..+.... ... ...|.+++.+
T Consensus 63 ~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~l-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~v~~v 135 (398)
T PRK07504 63 SNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQV-KAGDHVVAARALFGSCRYVVETLL------PRYGIESTLV 135 (398)
T ss_pred CCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHHh-CCCCEEEEcCCchhHHHHHHHHHH------hhcCeEEEEE
Confidence 467899999999999999988889999999998887766 69999999876654332110 111 2347777766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-h--hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-L--AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~--~~~~ 254 (285)
+ ..|+++++++|++ ++++|++++|+||+ |.+.| +++|.++|+++|+++|+|++|.. . ....
T Consensus 136 d-----~~d~e~l~~ai~~-------~tklV~lesp~Npt-G~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~~~~~ 199 (398)
T PRK07504 136 D-----GLDLDNWEKAVRP-------NTKVFFLESPTNPT-LEVID---IAAVAKIANQAGAKLVVDNVFATPLFQKPLE 199 (398)
T ss_pred C-----CCCHHHHHHhcCc-------CceEEEEECCCCCC-cEecC---HHHHHHHHHHcCCEEEEECCccccccCCchh
Confidence 4 2589999999987 89999999999999 89999 99999999999999999999872 1 1223
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
.++|+++.|++|++++ ..||+++++++++
T Consensus 200 ~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i 231 (398)
T PRK07504 200 LGAHIVVYSATKHIDGQGRCLGGVVLSDKAWI 231 (398)
T ss_pred hCCCEEEeeccccccCCccceEEEEEeCcHHH
Confidence 4789999999999987 4788898887765
No 129
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=99.85 E-value=2.1e-20 Score=172.40 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=151.8
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC-C---CCccCCh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG-D---DVYLEDP 101 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~---~~y~~~~ 101 (285)
.|..+.++.+.+.|+..++.+++.++.|+.- +.++.+|+|.+++.+++.. . ..+..++
T Consensus 40 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGH~~p~v~~Ai~~q~~~~~~~~~~~~~~~ 101 (459)
T PRK06931 40 LPLAIAKAQGVWVTDVEGNQYLDCLAGAGTL------------------ALGHNHPDVLQSIQDVLTSGLPLHTLDLTTP 101 (459)
T ss_pred CCceEEeccccEEEeCCCCEEEEcccchhhc------------------cCCCCCHHHHHHHHHHHhhhccccccccCCH
Confidence 3666777888888886655555554444432 3478999999999988753 1 1112466
Q ss_pred hHHHHHHHHHhHcCCC----cE-EEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccccccccc-----c
Q psy5413 102 TCKELQEKAAKLAGKE----AA-IFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQ-----I 169 (285)
Q Consensus 102 ~~~~l~~~la~~~g~~----~~-~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~-----~ 169 (285)
...++.+.+++.+... .. ++++|||+|++.|++++...+|+. |+ ....||+.+.....+.....+.. .
T Consensus 102 ~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~ 181 (459)
T PRK06931 102 LKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLM 181 (459)
T ss_pred HHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCC
Confidence 7888999999887421 23 566999999999999988666654 33 35788988754333221111111 1
Q ss_pred cceeeeeeecCCC---C---CCCHHHHHHHhcccc---cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413 170 GRVLMRGVTNQKD---G---TFDLDEMEAKFSTAD---NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240 (285)
Q Consensus 170 ~g~~~~~~~~~~~---~---~~d~~~l~~~i~~~~---~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~ 240 (285)
.+...++.|.... + ..+.+.+++.+++.. ..+.+++++|++|+.++..|..+.|.+++++++++|++||++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~L 261 (459)
T PRK06931 182 PGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGIL 261 (459)
T ss_pred CCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 1222222221100 0 113344433322211 112347999999999998855667899999999999999999
Q ss_pred EEEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeec
Q psy5413 241 VHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 241 li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~ 278 (285)
+|+||+++++ ....++.++. +.+++|.+++ |+++++..
T Consensus 262 lI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~Pi~av~~~ 308 (459)
T PRK06931 262 LIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGLPLAVLGIK 308 (459)
T ss_pred EEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCcceeeeeeH
Confidence 9999998843 3444555655 7777899988 88875544
No 130
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.85 E-value=2.9e-20 Score=169.21 Aligned_cols=203 Identities=17% Similarity=0.131 Sum_probs=146.1
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccC---------ChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLE---------DPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~---------~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~ 134 (285)
..++++..+++++++|.+..+...+......|.. .+...++++.+++++|.+ .++++++|+++.+.++.
T Consensus 20 ~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~ 99 (398)
T cd00613 20 QSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEAAGL 99 (398)
T ss_pred cCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHH
Confidence 4557888899999999887776554422223332 123567788888888876 56677777766666655
Q ss_pred HccccC--CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 135 THCDRR--DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 135 ~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
++...+ |++|++++++|..+....... ....|.+++.++.++++.+|++++++++.+ ++++|++++
T Consensus 100 ~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~-----~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~t~~viv~~ 167 (398)
T cd00613 100 AAIRAYHKRNKVLVPDSAHPTNPAVARTR-----GEPLGIEVVEVPSDEGGTVDLEALKEEVSE-------EVAALMVQY 167 (398)
T ss_pred HHHhcccCCCEEEEcCccCcchHHHHHHh-----cccCCcEEEEeccCCCCCcCHHHHHHhcCC-------CeEEEEEEC
Confidence 554445 899999999998764422222 012347788888766667899999999977 799999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh---hhcccCCeEEEeccccc-----CcceeEEeecCcccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA---EVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFI 283 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~---~~~~~~dv~~~s~sK~l-----~~p~gg~~~~~~~~i 283 (285)
++ ++ |.+.+ +|++|+++|++||+++|+|+++.. .. ....++|+++.++|||+ |+|.+|+++.+++++
T Consensus 168 ~~-~~-G~~~~--~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~ 243 (398)
T cd00613 168 PN-TL-GVFED--LIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELV 243 (398)
T ss_pred CC-CC-ceecc--hHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhH
Confidence 86 66 77754 369999999999999999998762 11 12347899999999998 237788998887665
Q ss_pred c
Q psy5413 284 Q 284 (285)
Q Consensus 284 ~ 284 (285)
+
T Consensus 244 ~ 244 (398)
T cd00613 244 R 244 (398)
T ss_pred h
Confidence 4
No 131
>PRK07777 aminotransferase; Validated
Probab=99.85 E-value=3.1e-20 Score=168.53 Aligned_cols=200 Identities=19% Similarity=0.157 Sum_probs=149.2
Q ss_pred eeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCCC-----cEEEcCChHHHHHHHHHH
Q psy5413 67 RTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGKE-----AAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 67 ~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~~-----~~~~~~~Gs~a~~~al~~ 135 (285)
++++|..+.+... ++.+.+++.+.... ...|.......++++.++++ +|.+ .+++++||++|+..++.+
T Consensus 25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~ 104 (387)
T PRK07777 25 GAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLG 104 (387)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHH
Confidence 5688888776653 34667766654442 34576666788899988876 3532 478999999999999988
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC---CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD---GTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
++ .+||+|++..++|..... .. ...|.+++.++..++ +.+|++++++++.+ ++++|++++
T Consensus 105 ~~-~~gd~vli~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~ 167 (387)
T PRK07777 105 LV-EPGDEVLLIEPYYDSYAA---VI------AMAGAHRVPVPLVPDGRGFALDLDALRAAVTP-------RTRALIVNS 167 (387)
T ss_pred hc-CCCCEEEEeCCCchhhHH---HH------HHCCCEEEEeecCCccCCCcCCHHHHHHhcCc-------ccEEEEEcC
Confidence 76 589999988877654432 11 234777777776433 45899999999876 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc-----ccCCeEEEecccccCc--ceeEEeec
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC-----ASVDTVMFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~-----~~~dv~~~s~sK~l~~--p~gg~~~~ 278 (285)
|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. ...++++.|+||.++. .+.|+++.
T Consensus 168 p~NPt-G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~ 246 (387)
T PRK07777 168 PHNPT-GTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACG 246 (387)
T ss_pred CCCCC-CccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEec
Confidence 99999 899999999999999999999999999986211 111 1234669999999874 56688888
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 247 ~~~l~~ 252 (387)
T PRK07777 247 PAPLIA 252 (387)
T ss_pred CHHHHH
Confidence 877653
No 132
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.85 E-value=2.3e-20 Score=168.40 Aligned_cols=197 Identities=21% Similarity=0.236 Sum_probs=149.8
Q ss_pred eccCCcCCCcHHHHHHHHhcccCC-----C-Ccc----CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHcc
Q psy5413 71 IRSDTISKPTMEMKNYMFNCEVGD-----D-VYL----EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 71 ~~~~~~~~~~~~v~~a~~~~~~~~-----~-~y~----~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~ 137 (285)
|.+.....+++.+.+++.+..... . .+. ......++++.+++++|.+ .+++++|+++++..++.++.
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 3 LDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred ccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 444555667788888887665321 1 111 1234678999999999876 56899999999999998876
Q ss_pred cc--CCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 138 DR--RDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 138 ~~--~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
.. +|++|++++..|.+.... .... ...|.+++.++.++++.+|++++++++.+ ++++|++++++
T Consensus 83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~~v~~~~~~ 149 (373)
T cd06453 83 RANKPGDEIVTSVMEHHSNIVPWQQLA------ERTGAKLKVVPVDDDGQLDLEALEKLLTE-------RTKLVAVTHVS 149 (373)
T ss_pred hcCCCCCEEEECcchhHHHHHHHHHHH------hhcCcEEEEeecCCCCCcCHHHHHHHhcC-------CceEEEEeCcc
Confidence 43 788999988887653211 1111 24588888888877778999999999987 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|++ |.+.| +++|.++|++||+++|+|+++. +.. ....++|+++++++|+++++..|+++.++++++
T Consensus 150 ~~t-G~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~ 219 (373)
T cd06453 150 NVL-GTINP---VKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLE 219 (373)
T ss_pred ccc-CCcCC---HHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhh
Confidence 999 99999 8999999999999999999987 211 112478999999999999865688888777654
No 133
>PRK07550 hypothetical protein; Provisional
Probab=99.85 E-value=2.6e-20 Score=168.94 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=152.6
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----CcEEEcCChHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----EAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~Gs~a~~~al 133 (285)
+...++|..+.+... .+.+.+++.+.... ...|.......+|++.++++++ . +.+++++|+++|+..++
T Consensus 28 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~ 107 (386)
T PRK07550 28 DGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAM 107 (386)
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHH
Confidence 456799998887664 66888887765432 2356655678888888888864 1 34578888899999999
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
.+++ ++||.|+++.++|..... .. ...|.+++.++.++ .+.+|++++++++++ ++++|+++
T Consensus 108 ~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~-------~~~~v~~~ 170 (386)
T PRK07550 108 VTLA-GAGDEVILPLPWYFNHKM---WL------DMLGIRPVYLPCDEGPGLLPDPAAAEALITP-------RTRAIALV 170 (386)
T ss_pred HHhc-CCCCEEEEcCCCCcchHH---HH------HhcCCEEEEEecCCCcCCCCCHHHHHHHhcc-------cCcEEEEe
Confidence 8887 689999998887644322 22 34588998888753 345799999999977 78899999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc----cCCeE-EEecccccC--cceeEEee
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA----SVDTV-MFCLSKGLG--APVGSILA 277 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~----~~dv~-~~s~sK~l~--~p~gg~~~ 277 (285)
+|+||| |.+++.+++++|+++|++||+++|+||+|..+. .... +.+++ +.|+||.++ |.+.|+++
T Consensus 171 ~P~NPt-G~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~ 249 (386)
T PRK07550 171 TPNNPT-GVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVV 249 (386)
T ss_pred CCCCCC-CcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeee
Confidence 999999 899999999999999999999999999986221 1111 12244 899999987 46778888
Q ss_pred cCccccc
Q psy5413 278 GPEEFIQ 284 (285)
Q Consensus 278 ~~~~~i~ 284 (285)
+++++++
T Consensus 250 ~~~~~~~ 256 (386)
T PRK07550 250 ASPARIA 256 (386)
T ss_pred cCHHHHH
Confidence 8777654
No 134
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=1.7e-20 Score=172.81 Aligned_cols=217 Identities=14% Similarity=0.079 Sum_probs=140.0
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++ +.++.+|+|.+|+.+++... ..+..++...+|.++|++..+. +.++|++|||+|++.|++
T Consensus 52 G~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~Alk 131 (457)
T PRK05639 52 GNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIK 131 (457)
T ss_pred CCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHH
Confidence 5566666544 45779999999999887631 1233456678899999998753 578999999999999999
Q ss_pred HccccCCCe-EEe-cCCcceeeeccccccc-ccccccccce---eeeeeecCCCCC--------CCHH--------HHHH
Q psy5413 135 THCDRRDSE-IIV-GDCSHIMLWEQGGASQ-TSVYSQIGRV---LMRGVTNQKDGT--------FDLD--------EMEA 192 (285)
Q Consensus 135 ~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~-~~~~~~~~g~---~~~~~~~~~~~~--------~d~~--------~l~~ 192 (285)
++...+|+. |+. ...||+.+..+..+.. ...+...++. .+..+|.+.... .+.+ .+++
T Consensus 132 lAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 211 (457)
T PRK05639 132 VSKFSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLEN 211 (457)
T ss_pred HHHHhcCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHH
Confidence 998666654 333 5788987754332221 0111111111 223333321100 1222 3444
Q ss_pred HhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecc
Q psy5413 193 KFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLS 265 (285)
Q Consensus 193 ~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~s 265 (285)
.+.. ...+.+++++|++|+.++..|..+.|.+++++|+++|++||+++|+||+++++ ....++.++. +.+++
T Consensus 212 ~l~~-~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~g 290 (457)
T PRK05639 212 YVFS-HVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFG 290 (457)
T ss_pred HHHH-hhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEec
Confidence 4421 01123489999999999987555678999999999999999999999998843 2233333333 45578
Q ss_pred cccCc--ceeEEeecCcccc
Q psy5413 266 KGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 266 K~l~~--p~gg~~~~~~~~i 283 (285)
|++++ |+|+++. +++++
T Consensus 291 K~l~gG~pi~av~~-~~~i~ 309 (457)
T PRK05639 291 KGVASGMGLSGVIG-RKELM 309 (457)
T ss_pred hhhcCCCcceeEEe-hHHHH
Confidence 99986 7776654 45443
No 135
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=2.2e-20 Score=170.88 Aligned_cols=237 Identities=16% Similarity=0.147 Sum_probs=152.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~ 102 (285)
|..++++.+.+.|+..++.+++.+..++. .+.++.||++.+++.+++... ..+ ..++.
T Consensus 23 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~ 84 (421)
T PRK06777 23 DFYAERAENATLWDVEGREYIDFAAGIAV------------------LNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYAS 84 (421)
T ss_pred CeeEEeeecCEEEeCCCCEEEEcccCHHh------------------hccCCCCHHHHHHHHHHHhhcccccccccCChH
Confidence 45566677777777554444333333322 134789999999999887642 222 24566
Q ss_pred HHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccc-cccccccce---e
Q psy5413 103 CKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQT-SVYSQIGRV---L 173 (285)
Q Consensus 103 ~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g~---~ 173 (285)
..++.++++++.. .+.++|++|||+|++.|++++...+|+. |+ ....||+.+.....+... ..+...++. .
T Consensus 85 ~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~ 164 (421)
T PRK06777 85 YVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGS 164 (421)
T ss_pred HHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCC
Confidence 7889999998864 3578999999999999999988666664 33 357889887543322210 112111111 1
Q ss_pred eeeeecCCCC-----CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 174 MRGVTNQKDG-----TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 174 ~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
+..++.+... ..+++.+++.+++. .+.+++++|++|++++.+|..+.|.+++++|+++|++||+++|+||+|+
T Consensus 165 ~~~~~~p~~~~~~~~~~~~~~l~~~~~~~--~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t 242 (421)
T PRK06777 165 IFHALYPNELHGVSVEEALSSVERLFKAD--IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT 242 (421)
T ss_pred cEEcCCCccccCcCHHHHHHHHHHHHHhc--cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 2222221111 12466778777531 1234799999999999885567899999999999999999999999988
Q ss_pred Chh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 249 PLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 249 ~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
++. ......++. +.+++|.+++ |+|+ +++++++++
T Consensus 243 g~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~piga-v~~~~~i~~ 286 (421)
T PRK06777 243 GFARTGKLFAMEYYDVKPDLITMAKSLGGGMPISA-VVGRAEVMD 286 (421)
T ss_pred CCccCCchhhhhhcCCCCCEEeeehhhcCCCceEE-EEEcHHHHh
Confidence 431 122233322 5578999976 6555 555566543
No 136
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=1.8e-20 Score=172.37 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=152.5
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC----CccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD----VYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.+..++.. +.++.||+|.+|+.+++.... .+..++.
T Consensus 25 p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~ 86 (445)
T PRK08593 25 PLVIDHGYGATLTDVDGKTYIDLLASASSQ------------------NVGHAPPRVVEAIKAQADKFIHYTPAYMYHEP 86 (445)
T ss_pred CceEEeeeeCEEEeCCCCEEEECCccHHhh------------------cCCCCCHHHHHHHHHHHHhccCccccccCCHH
Confidence 566777888888876555444444433321 447899999999998876321 2234677
Q ss_pred HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeeccccccc-ccccccccc---ee
Q psy5413 103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQ-TSVYSQIGR---VL 173 (285)
Q Consensus 103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~-~~~~~~~~g---~~ 173 (285)
..++.++|++++.. ++++|++|||+|++.|++++...+|+. |+ ....||+.+.....++. ...+...++ ..
T Consensus 87 ~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~ 166 (445)
T PRK08593 87 LVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPG 166 (445)
T ss_pred HHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCC
Confidence 89999999998742 468999999999999999987656654 33 36788988754332221 011111111 11
Q ss_pred eeeeecCCC-----CCCC-------HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413 174 MRGVTNQKD-----GTFD-------LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241 (285)
Q Consensus 174 ~~~~~~~~~-----~~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l 241 (285)
+..+|.++. ...+ ++++++.+... .+.+++++|++|++++.+|....|.+++++|+++|++||+++
T Consensus 167 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~ll 244 (445)
T PRK08593 167 FVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKY--LPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILF 244 (445)
T ss_pred cEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhh--cCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEE
Confidence 222332111 0111 23444444321 012479999999999987555688999999999999999999
Q ss_pred EEeCccCCh-----hhhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 242 HMDGARLPL-----AEVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 242 i~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|+||+++++ ....++.++. +.+++|.+++ |.|+ +++++++++
T Consensus 245 I~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~p~ga-v~~~~~i~~ 295 (445)
T PRK08593 245 AVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGMPMSA-IVGRKEIME 295 (445)
T ss_pred EEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCcccEE-EEEcHHHHh
Confidence 999998733 2223333433 6678899986 6665 555666553
No 137
>KOG0259|consensus
Probab=99.85 E-value=5.3e-20 Score=158.20 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=154.7
Q ss_pred CeeeeeccCCcCC-----CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHH
Q psy5413 66 IRTVDIRSDTISK-----PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNL 130 (285)
Q Consensus 66 ~~~~~~~~~~~~~-----~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~ 130 (285)
++++.+..+.|+. ..+++.+|+.+.... .+.|++..+....|+.+|+++. .+.++++.+.++|++
T Consensus 61 k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe 140 (447)
T KOG0259|consen 61 KPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIE 140 (447)
T ss_pred ceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHH
Confidence 5788888877775 577888888877663 5789999999999999999953 244688889999999
Q ss_pred HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413 131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
.++.++. ++|.+|+++.+.+..... .+ ...+.+++.+.. ..++.+|++.+|+.+++ +|.++
T Consensus 141 ~~i~~LA-~p~aNILlPrPGfp~Y~~---~a------~~~~lEVR~ydlLPe~~weIDL~~veal~DE-------NT~Ai 203 (447)
T KOG0259|consen 141 LAISSLA-NPGANILLPRPGFPLYDT---RA------IYSGLEVRYYDLLPEKDWEIDLDGVEALADE-------NTVAI 203 (447)
T ss_pred HHHHHhc-CCCCceecCCCCCchHHH---hh------hhcCceeEeecccCcccceechHHHHHhhcc-------CeeEE
Confidence 9999987 699999998877544332 22 233667666553 34678999999999999 89999
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----------ChhhhcccCCeE-EEecccccCc--ceeEE
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----------PLAEVCASVDTV-MFCLSKGLGA--PVGSI 275 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----------~~~~~~~~~dv~-~~s~sK~l~~--p~gg~ 275 (285)
++.+|+||+ |.+++.+-|++|+++|+++|+++|.||+|. ++..+...+.|+ +.+.||.+-. ++-|+
T Consensus 204 vviNP~NPc-GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 204 VVINPNNPC-GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred EEeCCCCCC-cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeee
Confidence 999999999 999999999999999999999999999977 344455667777 8999995433 55555
Q ss_pred ee
Q psy5413 276 LA 277 (285)
Q Consensus 276 ~~ 277 (285)
++
T Consensus 283 i~ 284 (447)
T KOG0259|consen 283 IA 284 (447)
T ss_pred EE
Confidence 54
No 138
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.85 E-value=3.2e-20 Score=168.68 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=132.4
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||+.|+..++.+++ ++||+|+++...|..++... ... ...|.+++.+
T Consensus 68 ~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~~~~t~~~~~~~~------~~~G~~v~~v 140 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALL-GAGDRLVAARSLFGSCFVVCNEIL------PRWGVETVFV 140 (403)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHh-CCCCEEEEccCCcchHHHHHHHHH------HHcCcEEEEE
Confidence 567799999999999999999999999999999998876 68999998875554332211 111 3457888777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|+++... ..+.
T Consensus 141 d~-----~d~~~l~~ai~~-------~tklV~~esp~Npt-g~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~~~~ 204 (403)
T PRK07810 141 DG-----EDLSQWEEALSV-------PTQAVFFETPSNPM-QSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQRGLP 204 (403)
T ss_pred CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCCccccCChhh
Confidence 64 389999999987 79999999999999 89999 999999999999999999998822 1334
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
.++|+++.|++|++++ .+||+++++++.+
T Consensus 205 ~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~ 236 (403)
T PRK07810 205 LGADVVVYSGTKHIDGQGRVLGGAILGDREYI 236 (403)
T ss_pred cCCcEEEccCCceecCCcCceeEEEEeChHHH
Confidence 5789999999999987 4578888877654
No 139
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.85 E-value=2.3e-20 Score=167.36 Aligned_cols=198 Identities=22% Similarity=0.256 Sum_probs=149.6
Q ss_pred cCCeeeeeccCCcCC--CcHHHHHHHHhcccC-CC-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413 64 VNIRTVDIRSDTISK--PTMEMKNYMFNCEVG-DD-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~~~v~~a~~~~~~~-~~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al 133 (285)
.|++++||.++++.+ .+|++++++.+.... .. .++..+...++++.++++++.+..+++++|++++..++
T Consensus 14 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l 93 (360)
T TIGR00858 14 DGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVI 93 (360)
T ss_pred CCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHH
Confidence 478999999887533 568999998876642 11 13344668889999999999888888899999999888
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
.+++ ++||+|++.+++|........ ..|.+++.++. +|++++++.+++.. ..++++|+++++
T Consensus 94 ~~~~-~~gd~v~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~~~~~~---~~~~~~v~~~~~ 155 (360)
T TIGR00858 94 SALV-GKGDLILSDALNHASLIDGCR---------LSGARVRRYRH-----NDVEHLERLLEKNR---GERRKLIVTDGV 155 (360)
T ss_pred HHhC-CCCCEEEEEccccHHHHHHHH---------hcCCceEEecC-----CCHHHHHHHHHHcc---cCCCeEEEEeCC
Confidence 8776 689999998888866543222 23666666553 48899999986521 025789999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------hh----cccCCeEEEecccccCcceeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------EV----CASVDTVMFCLSKGLGAPVGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~~----~~~~dv~~~s~sK~l~~p~gg~~~~~~ 280 (285)
+|++ |...+ +++|.++|+++|+++|+||+|+ +.. .. ....++++.|+||++++ .||++++++
T Consensus 156 ~~~~-G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~gG~~~~~~ 230 (360)
T TIGR00858 156 FSMD-GDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YGAYVAGSQ 230 (360)
T ss_pred ccCC-CCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cCcEEEcCH
Confidence 9998 88889 9999999999999999999986 111 11 12456779999999987 668888887
Q ss_pred cccc
Q psy5413 281 EFIQ 284 (285)
Q Consensus 281 ~~i~ 284 (285)
++++
T Consensus 231 ~~~~ 234 (360)
T TIGR00858 231 ALID 234 (360)
T ss_pred HHHH
Confidence 7653
No 140
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.85 E-value=3e-20 Score=168.92 Aligned_cols=165 Identities=21% Similarity=0.247 Sum_probs=134.6
Q ss_pred cc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-cccccccccccccee
Q psy5413 97 YL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVL 173 (285)
Q Consensus 97 y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~ 173 (285)
|. ++|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|.+
T Consensus 58 Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~ 130 (400)
T PRK06234 58 YSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSAL-KAGDHVVASDTLYGCTFALLNHGL------TRYGVE 130 (400)
T ss_pred ccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHH------hhCCeE
Confidence 55 678899999999999999889999999999999998876 69999999888775543211 011 245888
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc--CCeEEEeCccCChh
Q psy5413 174 MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH--NIPVHMDGARLPLA 251 (285)
Q Consensus 174 ~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~--gi~li~Dea~~~~~ 251 (285)
++.++.. |++++++++++ ++++|++++|+||+ |.+.| +++|.++|+++ |+++++|+++....
T Consensus 131 v~~vd~~-----d~e~l~~~i~~-------~tklI~iesP~NPt-G~v~d---l~~I~~la~~~~~~i~livDea~~~~~ 194 (400)
T PRK06234 131 VTFVDTS-----NLEEVRNALKA-------NTKVVYLETPANPT-LKVTD---IKAISNIAHENNKECLVFVDNTFCTPY 194 (400)
T ss_pred EEEECCC-----CHHHHHHHhcc-------CCeEEEEECCCCCC-CCcCC---HHHHHHHHHhcCCCCEEEEECCCCchh
Confidence 8877652 89999999987 78999999999999 89999 99999999997 99999999987321
Q ss_pred ---hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 252 ---EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 252 ---~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.+..++|+++.|++|++++ .+||++++++++++
T Consensus 195 ~~~~l~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~ 233 (400)
T PRK06234 195 IQRPLQLGADVVVHSATKYLNGHGDVIAGFVVGKEEFIN 233 (400)
T ss_pred cCCchhhCCcEEEeeccccccCCCCceeEEEEecHHHHH
Confidence 2234789999999999987 35788988877654
No 141
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.85 E-value=2.5e-20 Score=169.00 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=130.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|++++.+
T Consensus 63 ~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~-~~GD~Vl~~~~~y~~~~~~~~~~~------~~~Gi~v~~v 135 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLV-KAGDDVLIPDNAYGPNRDHGEWLA------RDFGITVRFY 135 (394)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHh-CCCCEEEEecCCcccHHHHHHHHH------HhcCeEEEEE
Confidence 678899999999999999999999999999999999887 69999999988876554311 122 3458887777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~ 254 (285)
+.. +.++++++|++ ++++|++++|+|++ +.+.+ +++|+++|+++|+++|+|++|.. ...+.
T Consensus 136 d~~-----~~~~l~~~i~~-------~tklV~le~p~Np~-~~~~d---i~~I~~ia~~~gi~livD~a~a~~~~~~~l~ 199 (394)
T PRK07050 136 DPL-----IGAGIADLIQP-------NTRLIWLEAPGSVT-MEVPD---VPAITAAARARGVVTAIDNTYSAGLAFKPFE 199 (394)
T ss_pred CCC-----CHHHHHHhcCC-------CCeEEEEECCCCCC-ccHhh---HHHHHHHHHHcCCEEEEECCcccccccCHHH
Confidence 542 45788988877 89999999999998 77776 99999999999999999999872 23344
Q ss_pred ccCCeEEEecccccCc----ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA----PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~----p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ +.|+++++++++++
T Consensus 200 ~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~ 233 (394)
T PRK07050 200 HGVDISVQALTKYQSGGSDVLMGATITADAELHA 233 (394)
T ss_pred cCCeEEEEECCceecCCCCeeEEEEEECCHHHHH
Confidence 5789999999999976 34445556666654
No 142
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=99.85 E-value=2.1e-20 Score=171.75 Aligned_cols=214 Identities=17% Similarity=0.175 Sum_probs=140.3
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC---CCc-cCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD---DVY-LEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~---~~y-~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++ +.++.+|++.+|+.+++... ..+ ..++...++.++|+++. +.+.++|++|||+|++.|++
T Consensus 45 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~Alk 124 (442)
T PRK13360 45 GRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALK 124 (442)
T ss_pred CCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence 4555565433 34789999999999887631 122 24677889999999986 35678999999999999999
Q ss_pred Hcccc------CCC-eEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCC-----CC--------CCHHHH
Q psy5413 135 THCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKD-----GT--------FDLDEM 190 (285)
Q Consensus 135 ~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~-----~~--------~d~~~l 190 (285)
++... +++ +||. ...||+.+.....+.....+...++ ..+..+|...+ .. .+++++
T Consensus 125 lAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l 204 (442)
T PRK13360 125 IALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADEL 204 (442)
T ss_pred HHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHH
Confidence 98742 122 3544 6788987643222221111211111 11222232111 00 125677
Q ss_pred HHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEe
Q psy5413 191 EAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFC 263 (285)
Q Consensus 191 ~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s 263 (285)
++++... +.+++++|++|++++..|-...|.+++++|+++|++||+++|+||+++++ ....++.++. +.+
T Consensus 205 e~~l~~~---~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt 281 (442)
T PRK13360 205 ERLVTLH---DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLT 281 (442)
T ss_pred HHHHHhc---CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceee
Confidence 7777531 23479999999999988555577899999999999999999999998733 2333444444 568
Q ss_pred cccccCc---ceeEEeecCccc
Q psy5413 264 LSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 264 ~sK~l~~---p~gg~~~~~~~~ 282 (285)
++|++++ |+|++++. +++
T Consensus 282 ~gK~l~gG~~P~gav~~~-~~i 302 (442)
T PRK13360 282 CAKGLTNGAIPMGAVFVS-SEI 302 (442)
T ss_pred eeeccccCccceEEEEEc-HHH
Confidence 8899975 88886654 444
No 143
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.85 E-value=4.2e-20 Score=167.74 Aligned_cols=200 Identities=19% Similarity=0.183 Sum_probs=146.4
Q ss_pred eeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChh----HHHHHHHHHhHcCC----C-cEEEcCChHHHHHHHHH
Q psy5413 67 RTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPT----CKELQEKAAKLAGK----E-AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~----~~~l~~~la~~~g~----~-~~~~~~~Gs~a~~~al~ 134 (285)
..++|..+.+.. +++.+.+++.+.... ...|..... ...+++.+++.+|. + ..++++|+++++..++.
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~ 107 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAIL 107 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHH
Confidence 457888766654 667888888765432 234654433 44445555555564 2 35788888899998888
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ .+||+|++++++|..... .. ...|.+++.++.+.++.+|++++++.+++ ++++|++.+|+
T Consensus 108 ~~~-~~gd~Vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~klv~~~~p~ 170 (389)
T PRK05957 108 AIT-DPGDEIILNTPYYFNHEM---AI------TMAGCQPILVPTDDNYQLQPEAIEQAITP-------KTRAIVTISPN 170 (389)
T ss_pred Hhc-CCCCEEEEeCCCCcCHHH---HH------HhcCCEEEEeecCCCCCcCHHHHHHhcCc-------CceEEEEeCCC
Confidence 876 589999998877643322 11 24588888888866778999999999977 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc----ccCC-eEEEecccccCc--ceeEEeecCc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC----ASVD-TVMFCLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~----~~~d-v~~~s~sK~l~~--p~gg~~~~~~ 280 (285)
||| |.+++.+++++|+++|++||+++|+||+|..+. ... .... +++.|+||.++. .+.|+++.++
T Consensus 171 NPt-G~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~ 249 (389)
T PRK05957 171 NPT-GVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPI 249 (389)
T ss_pred CCC-CcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCH
Confidence 999 999999999999999999999999999976111 111 1112 448999999864 5678888887
Q ss_pred cccc
Q psy5413 281 EFIQ 284 (285)
Q Consensus 281 ~~i~ 284 (285)
++++
T Consensus 250 ~~~~ 253 (389)
T PRK05957 250 HLLE 253 (389)
T ss_pred HHHH
Confidence 7764
No 144
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.85 E-value=1.7e-20 Score=169.52 Aligned_cols=162 Identities=20% Similarity=0.181 Sum_probs=128.6
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...+||+.+++++|.+.++.++||++|+..++.+++ ++||+|+++.+.|..+....... ...|.++..+.
T Consensus 51 ~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll-~~GD~Vlv~~~~y~~~~~~~~~~------~~~g~~v~~~~ 123 (385)
T PRK08574 51 ENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLL-KAGDRVVLPMEAYGTTLRLLKSL------EKFGVKVVLAY 123 (385)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchhHHHHHHHh------hccCcEEEEEC
Confidence 578899999999999999999999999999999998876 69999999888876553311111 23355555443
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~~~ 255 (285)
.|++++++++++. ++++|++++|+||+ |.++| +++|+++|+++|+++|+|++++ + ...+..
T Consensus 124 ------~d~~~l~~~i~~~------~tklV~ie~p~NPt-G~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~l~~ 187 (385)
T PRK08574 124 ------PSTEDIIEAIKEG------RTKLVFIETMTNPT-LKVID---VPEVAKAAKELGAILVVDNTFATPLLYRPLRH 187 (385)
T ss_pred ------CCHHHHHHhcCcc------CceEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCCccccCChhhh
Confidence 2688999998652 68999999999999 99999 9999999999999999999986 2 223345
Q ss_pred cCCeEEEecccccCcc---eeE-EeecCcccc
Q psy5413 256 SVDTVMFCLSKGLGAP---VGS-ILAGPEEFI 283 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~p---~gg-~~~~~~~~i 283 (285)
++|+++.|++|+++++ +|| +++++++++
T Consensus 188 GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~ 219 (385)
T PRK08574 188 GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFL 219 (385)
T ss_pred CCcEEEeeCceeecCCCCceeEEEEECcHHHH
Confidence 7899999999999874 567 666666654
No 145
>PLN02651 cysteine desulfurase
Probab=99.85 E-value=4.4e-20 Score=166.19 Aligned_cols=195 Identities=19% Similarity=0.204 Sum_probs=143.8
Q ss_pred eccCCcCCCcHHHHHHHHhcccCCC---C---c--c--CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc-
Q psy5413 71 IRSDTISKPTMEMKNYMFNCEVGDD---V---Y--L--EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC- 137 (285)
Q Consensus 71 ~~~~~~~~~~~~v~~a~~~~~~~~~---~---y--~--~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~- 137 (285)
|.+...+..++++++++.+...... . + + ......++++.+++++|.+ .++|++|||+++..++..+.
T Consensus 3 ld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 3 LDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH 82 (364)
T ss_pred ccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4455556678899999876543211 0 1 1 1234778899999999875 46899999999888877653
Q ss_pred --ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413 138 --DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN 215 (285)
Q Consensus 138 --~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n 215 (285)
.++|++|++.+..|.+........ ...|.+++.++.++++.+|+++++++|++ ++++|++++++|
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~v~~~~n 149 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHL------QQEGFEVTYLPVKSDGLVDLDELAAAIRP-------DTALVSVMAVNN 149 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhcCC-------CcEEEEEECCCC
Confidence 256888998887775543211111 23477888888767788899999999987 789999999999
Q ss_pred CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI 283 (285)
Q Consensus 216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i 283 (285)
++ |.+.| +++|.++||++|+++++|++|+ + +.....++|+++++.+|| ++|. .|++..+++.+
T Consensus 150 ~t-G~~~~---l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~-~gp~G~g~l~v~~~~~ 217 (364)
T PLN02651 150 EI-GVIQP---VEEIGELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKI-YGPKGVGALYVRRRPR 217 (364)
T ss_pred Cc-eeccc---HHHHHHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhh-CCCCceEEEEEcCCCC
Confidence 99 99999 9999999999999999999988 2 222235789999999998 4554 35555555443
No 146
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=99.85 E-value=1.6e-21 Score=173.43 Aligned_cols=210 Identities=20% Similarity=0.205 Sum_probs=134.5
Q ss_pred CCeeeeecc----CCcCCCcHHHHHHHHhcccCC-C---CccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRS----DTISKPTMEMKNYMFNCEVGD-D---VYLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~~-~---~y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.+ .+.++.+|++.+++.+++... . ....++...+|.+.|.+.+ +.+.++|++|||+|++.|++
T Consensus 15 G~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alk 94 (339)
T PF00202_consen 15 GREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALK 94 (339)
T ss_dssp SEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHH
T ss_pred CCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHH
Confidence 455566543 355779999999999876532 1 1224567889999999998 56678999999999999999
Q ss_pred Hcc------ccCCCe-EEe-cCCcceeeecccccccccccccccce---eeeeeecCCCCC-----CCHHHHHHHhcccc
Q psy5413 135 THC------DRRDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGT-----FDLDEMEAKFSTAD 198 (285)
Q Consensus 135 ~~~------~~~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~-----~d~~~l~~~i~~~~ 198 (285)
++. ..+++. |+. ...||+.+.....+...+.+...++. .+..+|.+.... ...+++++.+.+.
T Consensus 95 la~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~- 173 (339)
T PF00202_consen 95 LARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAAL- 173 (339)
T ss_dssp HHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhh-
Confidence 988 445554 443 57889877543332212222222222 223444421110 0122234333221
Q ss_pred cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc----cCCeEEEecccccC
Q psy5413 199 NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA----SVDTVMFCLSKGLG 269 (285)
Q Consensus 199 ~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~----~~dv~~~s~sK~l~ 269 (285)
+.+++++|++|+.++..|....+++++++|+++|++||+++|+||+++++. ...+ ..|++ +++|+++
T Consensus 174 --~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv--~~gK~l~ 249 (339)
T PF00202_consen 174 --NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIV--TFGKGLG 249 (339)
T ss_dssp --HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEE--EEEGGGG
T ss_pred --cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccc--ccccchh
Confidence 234899999999999886778889999999999999999999999988442 2222 34554 4559998
Q ss_pred c--ceeEEeecC
Q psy5413 270 A--PVGSILAGP 279 (285)
Q Consensus 270 ~--p~gg~~~~~ 279 (285)
+ |+++++.++
T Consensus 250 gG~p~sav~~~~ 261 (339)
T PF00202_consen 250 GGLPISAVLGSE 261 (339)
T ss_dssp TTSSEEEEEEEH
T ss_pred hhhhcccccccc
Confidence 8 888777654
No 147
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.85 E-value=1.3e-20 Score=170.75 Aligned_cols=162 Identities=19% Similarity=0.180 Sum_probs=132.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++++.+++++|.+.+++++||++|+..++.+++ ++||+|++++..|..+.... ... ...|.+++.+
T Consensus 59 ~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al~-~~Gd~Vi~~~~~y~~t~~~~~~~~------~~~G~~v~~v 131 (390)
T PRK08133 59 TNPTVTMFQERLAALEGAEACVATASGMAAILAVVMALL-QAGDHVVSSRSLFGSTVSLFEKIF------ARFGIETTFV 131 (390)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCcchhHHHHHHHHH------HHcCcEEEEE
Confidence 567899999999999999999999999999999998876 68999999887765543211 111 2457788777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|++||+++|+|+++... ..+.
T Consensus 132 d~~-----d~~~l~~~i~~-------~tklV~ie~p~Npt-G~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~pl~ 195 (390)
T PRK08133 132 DLT-----DLDAWRAAVRP-------NTKLFFLETPSNPL-TELAD---IAALAEIAHAAGALLVVDNCFCTPALQQPLK 195 (390)
T ss_pred CCC-----CHHHHHHhcCc-------CCeEEEEECCCCCC-CCcCC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence 653 78999999987 89999999999999 89999 999999999999999999998622 2233
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCcccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
.++|+++.|++|++++ .+||+++++++++
T Consensus 196 ~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~ 227 (390)
T PRK08133 196 LGADVVIHSATKYLDGQGRVLGGAVVGSKELM 227 (390)
T ss_pred hCCcEEEeecceeecCCcceEeEEEEcCHHHH
Confidence 4789999999999987 4678888877654
No 148
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.85 E-value=5.2e-20 Score=167.78 Aligned_cols=207 Identities=16% Similarity=0.157 Sum_probs=138.6
Q ss_pred CCeeeeeccCCc----CCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++.. ++.+|+|.+++.++..... .....+...++++.++++++.+.++|++||++|++.|++++.
T Consensus 36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~ 115 (401)
T TIGR01885 36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLAR 115 (401)
T ss_pred CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHH
Confidence 667788877533 3469999999988765211 111456789999999999998889999999999999999975
Q ss_pred cc--------CCCe-EEec-CCcceeeecccccccccccccccce---eeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413 138 DR--------RDSE-IIVG-DCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS 204 (285)
Q Consensus 138 ~~--------~g~~-vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 204 (285)
.. +++. |+.. ..+|+.+.....++..+.+...++. .+..++. .|++++++.+++ ++++
T Consensus 116 ~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~----~~~~ 186 (401)
T TIGR01885 116 KWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-----NNLEALEEALED----HGPN 186 (401)
T ss_pred HHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-----CCHHHHHHHHHh----cCCC
Confidence 31 2343 4443 4567765433222211111111221 2223332 378999998865 2347
Q ss_pred eEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh----h-hc----ccCCeEEEecccccCc---c
Q psy5413 205 TSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA----E-VC----ASVDTVMFCLSKGLGA---P 271 (285)
Q Consensus 205 ~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~----~-~~----~~~dv~~~s~sK~l~~---p 271 (285)
+++|++|++++++ |.+. +.++|++|+++|++||+++|+||+|+++. . .. ...|++ +++|.+++ |
T Consensus 187 ~~avi~E~v~~~~-G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~--~~gK~l~~g~~~ 263 (401)
T TIGR01885 187 VCAFIVEPIQGEA-GVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIV--LLGKALSGGVYP 263 (401)
T ss_pred EEEEEEeCccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEE--EeeccccCCCCC
Confidence 8999999999998 5555 56789999999999999999999987431 1 11 123544 56799876 4
Q ss_pred eeEEeecCccccc
Q psy5413 272 VGSILAGPEEFIQ 284 (285)
Q Consensus 272 ~gg~~~~~~~~i~ 284 (285)
+| ++++++++++
T Consensus 264 ig-~v~~~~~i~~ 275 (401)
T TIGR01885 264 VS-AVLADDDVML 275 (401)
T ss_pred cE-EEEEcHHHHh
Confidence 44 4555666543
No 149
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.85 E-value=2.6e-20 Score=169.67 Aligned_cols=219 Identities=16% Similarity=0.154 Sum_probs=146.6
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCc
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVY 97 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y 97 (285)
+|..+.++.+.+.|+.. |++++||.++ +.++.+|++.+++.+++... ..|
T Consensus 25 ~~~~~~~~~G~~~~d~d----------------------g~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~ 82 (398)
T PRK03244 25 PPLALVRGEGAVVWDVD----------------------GKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLF 82 (398)
T ss_pred CCceEEEeeecEEEECC----------------------CCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCcc
Confidence 45556666666666633 5667777653 22445899999998877631 234
Q ss_pred cCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCC-eEEe-cCCcceeeeccccccccccccc---c
Q psy5413 98 LEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDS-EIIV-GDCSHIMLWEQGGASQTSVYSQ---I 169 (285)
Q Consensus 98 ~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~---~ 169 (285)
. ++...++++.++++++. +.+++++||++|++.+++++.. +|+ .++. ...||+++.....+.....+.. .
T Consensus 83 ~-~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~-~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 160 (398)
T PRK03244 83 A-TEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL-TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEP 160 (398)
T ss_pred C-CHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHH-HCCCeEEEECCCcCCccHHHHhccCCcccccCCCC
Confidence 4 45578999999999875 3679999999999999998774 663 3443 4677877543222210000000 1
Q ss_pred cceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC
Q psy5413 170 GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP 249 (285)
Q Consensus 170 ~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~ 249 (285)
.+..+..+|. .|++++++.+.+ ++++|++++++|++|....+.+++++|.++|++||+++|+||+|++
T Consensus 161 ~~~~~~~~~~-----~d~~~l~~~~~~-------~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g 228 (398)
T PRK03244 161 LPGGVEHVPY-----GDVDALAAAVDD-------DTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTG 228 (398)
T ss_pred CCCCceEeCC-----CCHHHHHHhhcC-------CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 1122333332 388999998865 7899999999999944445667899999999999999999999874
Q ss_pred hh-----hhcc----cCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413 250 LA-----EVCA----SVDTVMFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 250 ~~-----~~~~----~~dv~~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
+. .... ..| +.+++|++++ |+|++++. ++++
T Consensus 229 ~gr~g~~~~~~~~~~~pD--i~t~sK~l~~G~~ig~~~~~-~~~~ 270 (398)
T PRK03244 229 IGRTGAWFAHQHDGVTPD--VVTLAKGLGGGLPIGACLAF-GPAA 270 (398)
T ss_pred CcccchHHhhhhhCCCCC--EEEEchhhhCCcccEEEEEc-HHHH
Confidence 31 1111 234 4577899986 77766654 4444
No 150
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.85 E-value=2.7e-20 Score=171.36 Aligned_cols=212 Identities=13% Similarity=0.121 Sum_probs=135.7
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC--CCc--cCChhHHHHHHHHHhHcCC---CcEEEcCChHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD--DVY--LEDPTCKELQEKAAKLAGK---EAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al 133 (285)
|++++||.++ +.++.+|+|.+++.+++... ..+ ..++...++.++|++.... +.++|++|||+|++.|+
T Consensus 55 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Al 134 (443)
T PRK06058 55 GNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAV 134 (443)
T ss_pred CCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHH
Confidence 5666666553 45779999999999887632 122 2456678899999998742 46799999999999999
Q ss_pred HHccccCCC-eEEe-cCCcceeeecccccccc-cccccccc---eeeeeee--cCCCC----CC--------CHHHHHHH
Q psy5413 134 MTHCDRRDS-EIIV-GDCSHIMLWEQGGASQT-SVYSQIGR---VLMRGVT--NQKDG----TF--------DLDEMEAK 193 (285)
Q Consensus 134 ~~~~~~~g~-~vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g---~~~~~~~--~~~~~----~~--------d~~~l~~~ 193 (285)
+++....|+ +|+. ...||+.+.....+... ..+...++ ..+..++ ...+. .. .++.+++.
T Consensus 135 klAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 214 (443)
T PRK06058 135 KIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQ 214 (443)
T ss_pred HHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHh
Confidence 988755554 3443 57789887543322210 11111111 1112222 11110 00 12223333
Q ss_pred hcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEeccc
Q psy5413 194 FSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSK 266 (285)
Q Consensus 194 i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK 266 (285)
+. .+++++|++|+.++..|..+.|.++|++|+++|++||+++|+||+++++ ....++.++. +.+++|
T Consensus 215 ~~------~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK 288 (443)
T PRK06058 215 VG------ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAK 288 (443)
T ss_pred hC------CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcc
Confidence 32 2379999999999887444567899999999999999999999998843 2223444443 556679
Q ss_pred ccCc--ceeEEeecCcccc
Q psy5413 267 GLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 267 ~l~~--p~gg~~~~~~~~i 283 (285)
.+++ |+|+++. +++++
T Consensus 289 ~l~~G~Pi~av~~-~~~i~ 306 (443)
T PRK06058 289 GIAGGLPLSAVTG-RAEIM 306 (443)
T ss_pred cccCCCccEEEEE-cHHHH
Confidence 9987 7776665 45554
No 151
>PRK09082 methionine aminotransferase; Validated
Probab=99.85 E-value=2.3e-20 Score=169.33 Aligned_cols=201 Identities=17% Similarity=0.083 Sum_probs=151.4
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCCC-----cEEEcCChHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGKE-----AAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~~-----~~~~~~~Gs~a~~~al~ 134 (285)
..+++|..+.+.. +++.+.+++.+.... ...|.......++++.++++ +|.+ .+++++||++|+..++.
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 109 (386)
T PRK09082 30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAIL 109 (386)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHH
Confidence 4568888877665 466888887765532 34566555566677666664 4542 46788889999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ .+||+|+++.++|....... +..|.+++.++.+ +++.+|++++++.+++ ++++|++++|
T Consensus 110 ~~~-~~gd~Vli~~p~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~v~l~~p 172 (386)
T PRK09082 110 ALV-RPGDEVIVFDPSYDSYAPAI---------ELAGGRAVRVALQPPDFRVDWQRFAAAISP-------RTRLIILNTP 172 (386)
T ss_pred HHc-CCCCEEEEeCCCchhhHHHH---------HHcCCEEEEEecCcccccCCHHHHHHhcCc-------cceEEEEeCC
Confidence 887 68999999988876543322 2348888888874 3567899999999976 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--cCCeEEEecccccCc--ceeEEeecC
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--SVDTVMFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~ 279 (285)
+||| |.+++.+++++|.++|++||+++|+||+|..+ ..... ...+++.|+||.++. .+.|+++++
T Consensus 173 ~NPt-G~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~ 251 (386)
T PRK09082 173 HNPS-GTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAP 251 (386)
T ss_pred CCCC-CcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCC
Confidence 9999 99999999999999999999999999997611 11111 122458999999864 677888888
Q ss_pred ccccc
Q psy5413 280 EEFIQ 284 (285)
Q Consensus 280 ~~~i~ 284 (285)
+++++
T Consensus 252 ~~l~~ 256 (386)
T PRK09082 252 AALSA 256 (386)
T ss_pred HHHHH
Confidence 87764
No 152
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.84 E-value=5.5e-20 Score=167.41 Aligned_cols=200 Identities=19% Similarity=0.174 Sum_probs=149.1
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcC-------CCcEEEcCChHHHHHHHHHHcc
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG-------KEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g-------~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
..+++|..+.+.. ..+.+.+++.+.......|.......++++.++++++ .+.+++++||++|+..++..++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~ 109 (397)
T PRK07568 30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAIC 109 (397)
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHhc
Confidence 4578888887765 5668888887654434567766678899999999862 3456899999999999998876
Q ss_pred ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC-CC-C-CCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 138 DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DG-T-FDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 138 ~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~-~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
++|++|++++++|..... .. +..|.+++.++.+. ++ . .+++++++++++ ++++|++++|+
T Consensus 110 -~~gd~Vl~~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~-------~~~~v~i~~p~ 172 (397)
T PRK07568 110 -DPGDEILVPEPFYANYNG---FA------TSAGVKIVPVTTKIEEGFHLPSKEEIEKLITP-------KTKAILISNPG 172 (397)
T ss_pred -CCCCEEEEecCCCccHHH---HH------HHcCCEEEEeecCcccCCCCCCHHHHHHhcCc-------cceEEEEECCC
Confidence 589999998876543322 22 34588888888642 22 2 367999999877 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCC--eEEEecccccCc--ceeEEeec-C
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVD--TVMFCLSKGLGA--PVGSILAG-P 279 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~d--v~~~s~sK~l~~--p~gg~~~~-~ 279 (285)
||| |.+++.+++++|+++|+++|+++|+||+|..+. .+....+ +++.|+||.+++ .+.|+++. +
T Consensus 173 NPt-G~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~ 251 (397)
T PRK07568 173 NPT-GVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKN 251 (397)
T ss_pred CCC-CccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCC
Confidence 999 999999999999999999999999999987221 1111123 448999998863 56667665 4
Q ss_pred cccc
Q psy5413 280 EEFI 283 (285)
Q Consensus 280 ~~~i 283 (285)
++++
T Consensus 252 ~~~~ 255 (397)
T PRK07568 252 KELI 255 (397)
T ss_pred HHHH
Confidence 5554
No 153
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.84 E-value=2e-20 Score=170.94 Aligned_cols=234 Identities=14% Similarity=0.156 Sum_probs=149.3
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCC--ccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDV--YLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~--y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++....|+. .+.++.+|++.+|+.+++.. +.. ...++.
T Consensus 26 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~ 87 (428)
T PRK07986 26 VYPVVSAEGCELILADGRRLVDGMSSWWA------------------AIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPP 87 (428)
T ss_pred CeeEEeeeeeEEEeCCCCEEEEcchhHHh------------------hcCCCCCHHHHHHHHHHHhhcCCccccccCCHH
Confidence 34566667777776554444443333332 14477999999999988764 221 224667
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc-----CCC-eEEe-cCCcceeeeccccccc-ccccccccce
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR-----RDS-EIIV-GDCSHIMLWEQGGASQ-TSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~-----~g~-~vi~-~~~~h~~~~~~~~~~~-~~~~~~~~g~ 172 (285)
..+|.++|+++.+ .+.++|++|||+|++.|++++... +++ +|+. ...||+.+.....+.. ...+...++.
T Consensus 88 ~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~ 167 (428)
T PRK07986 88 AIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKG 167 (428)
T ss_pred HHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCC
Confidence 8899999999874 467899999999999999998743 233 3443 6788987644332221 1112111111
Q ss_pred ---eeeeeecC--CC----CCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEE
Q psy5413 173 ---LMRGVTNQ--KD----GTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVH 242 (285)
Q Consensus 173 ---~~~~~~~~--~~----~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li 242 (285)
.+..++.. .. ...|++++++.++. +.+++++|++|+. ++..|..+.++++|++|+++|++||+++|
T Consensus 168 ~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~----~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI 243 (428)
T PRK07986 168 YLPENLFAPAPQSRFDGEWDERDIAPFARLMAA----HRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLI 243 (428)
T ss_pred CCCCCEEECCCCcccchhhHHHHHHHHHHHHHh----CCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 11222221 10 12467788888864 3347999999995 77764456678999999999999999999
Q ss_pred EeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 243 MDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 243 ~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
+||+++++. ...++.++. +.+++|.+++ |+++++. +++++
T Consensus 244 ~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~-~~~i~ 293 (428)
T PRK07986 244 ADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLT-TREVA 293 (428)
T ss_pred EeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhc-hHHHH
Confidence 999988542 122333333 4568899876 6665554 44443
No 154
>PRK09148 aminotransferase; Validated
Probab=99.84 E-value=5.7e-20 Score=167.70 Aligned_cols=204 Identities=13% Similarity=0.090 Sum_probs=149.9
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a 132 (285)
|+.+++|..+++.. +++.+.+++.+.... ...|....+..+|++.+++++ |. + .+++++|+++++..+
T Consensus 29 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~ 108 (405)
T PRK09148 29 GADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANM 108 (405)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHH
Confidence 56789999888765 456788887765432 245765556788999999886 32 3 578899999999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+.+++ .+||.|++++++|....... ...|.+++.++...++. ++++++++++. +..++++|++++
T Consensus 109 ~~~l~-~~gd~Vl~~~P~y~~~~~~~---------~~~g~~v~~v~~~~~~~-~~~~l~~~~~~----~~~~~~~v~l~~ 173 (405)
T PRK09148 109 AQAIT-APGDVILCPNPSYPIHAFGF---------IMAGGVIRSVPAEPDEE-FFPALERAVRH----SIPKPIALIVNY 173 (405)
T ss_pred HHHhc-CCCCEEEEcCCCCcccHHHH---------HhcCCEEEEEeCCCCCC-CccCHHHHHhh----ccccceEEEEeC
Confidence 99887 58999999988875443211 23488888888754332 34455555543 122789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc---ccCC--eEEEecccccCc--ceeEEeec
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC---ASVD--TVMFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~---~~~d--v~~~s~sK~l~~--p~gg~~~~ 278 (285)
|+||| |.+++.+++++|.++|++||+++|+||+|..+. .+. ...+ +++.|+||.++. .+.|++++
T Consensus 174 P~NPt-G~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~ 252 (405)
T PRK09148 174 PSNPT-AYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVG 252 (405)
T ss_pred CCCCC-CcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeC
Confidence 99999 999999999999999999999999999987221 111 1123 348999998874 67888988
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 253 ~~~~i~ 258 (405)
T PRK09148 253 NERLIA 258 (405)
T ss_pred CHHHHH
Confidence 887764
No 155
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.84 E-value=2.7e-20 Score=170.05 Aligned_cols=230 Identities=13% Similarity=0.140 Sum_probs=146.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCCc--cCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVY--LEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y--~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++....++. .+.++.+|++.+++.+++.. +..+ ..++.
T Consensus 23 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~ 84 (422)
T PRK05630 23 NRLVTSTDGVFLTLEDGSTVIDAMSSWWS------------------AAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEP 84 (422)
T ss_pred CeeEEeceeeEEEECCCCEEEEcchhHHH------------------hcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHH
Confidence 55666777777777554444443333332 24578999999999988764 2222 24566
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEE-ecCCcceeeecccccccc-cccccccc
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EII-VGDCSHIMLWEQGGASQT-SVYSQIGR 171 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g 171 (285)
..+|.++|++..+ .++++|++|||+|++.|++++... +++ +|+ ....||+.+..+..+... ..+...++
T Consensus 85 ~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~ 164 (422)
T PRK05630 85 AIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWK 164 (422)
T ss_pred HHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCccccccccc
Confidence 8899999999873 567899999999999999998642 233 344 367889876443322210 11111112
Q ss_pred e---eeeeeecCCCCCCC-------HHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413 172 V---LMRGVTNQKDGTFD-------LDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIP 240 (285)
Q Consensus 172 ~---~~~~~~~~~~~~~d-------~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~ 240 (285)
. ....+|.+.....+ ++.+++.+.+ ++++|++|+. ++.+|..+.|.+++++|+++|++||++
T Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~l 237 (422)
T PRK05630 165 GTLPEQIFAPAPPVRGSSPQEISEYLRSLELLIDE-------TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDIL 237 (422)
T ss_pred ccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHhh-------ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 1 12222321111111 2344555543 8999999995 988755567789999999999999999
Q ss_pred EEEeCccCChh-----hhcccCCeE--EEecccccCc---ceeEEeecCccc
Q psy5413 241 VHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 241 li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
+|+||+++++. ...+..++. +.+++|++++ |.++++ .++++
T Consensus 238 lI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~-~~~~i 288 (422)
T PRK05630 238 LIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATL-CTDKV 288 (422)
T ss_pred EEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceee-ccHHH
Confidence 99999988442 223344444 5588899955 555544 44544
No 156
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=99.84 E-value=3.7e-20 Score=170.71 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=140.9
Q ss_pred cCCeeeeecc---CCcCCCcHHHHHHHHhcccCCC---CccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHH
Q psy5413 64 VNIRTVDIRS---DTISKPTMEMKNYMFNCEVGDD---VYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 64 ~~~~~~~~~~---~~~~~~~~~v~~a~~~~~~~~~---~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~ 135 (285)
.|++++||.+ .+.++.+|+|.+++.+++.... ....++...+|++.|+++++ .+.++|++|||+|+++|+++
T Consensus 70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~Alkl 149 (459)
T PRK06082 70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKL 149 (459)
T ss_pred CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHH
Confidence 4678888863 2346699999999998876311 11246778999999999985 35789999999999999999
Q ss_pred ccccCCC-eEE-ecCCcceeeecccccccccccccccce---eeeeeecCC-----CCCC------CHHHHHHHhccccc
Q psy5413 136 HCDRRDS-EII-VGDCSHIMLWEQGGASQTSVYSQIGRV---LMRGVTNQK-----DGTF------DLDEMEAKFSTADN 199 (285)
Q Consensus 136 ~~~~~g~-~vi-~~~~~h~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~-----~~~~------d~~~l~~~i~~~~~ 199 (285)
+...+|+ +|+ +.+.||+.+.....+.....+...++. .+..++... .... +++++++.+++
T Consensus 150 Ar~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--- 226 (459)
T PRK06082 150 ARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEK--- 226 (459)
T ss_pred HHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhc---
Confidence 8755554 343 467889877433222211222211111 122222111 1111 23567777754
Q ss_pred ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc--
Q psy5413 200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA-- 270 (285)
Q Consensus 200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~-- 270 (285)
+ +++++|++|++++.+ +.+.|.+++++|+++|++||+++|+||+++++ ....++.++. +.+++|++++
T Consensus 227 -~-~~vAavIvEPv~g~g-~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~ 303 (459)
T PRK06082 227 -E-GGIGAFIAEAVRNTD-VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGL 303 (459)
T ss_pred -C-CCEEEEEECCccCCC-CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCC
Confidence 1 278999999999874 77888999999999999999999999998843 2223444443 5568899987
Q ss_pred -ceeEEeecC
Q psy5413 271 -PVGSILAGP 279 (285)
Q Consensus 271 -p~gg~~~~~ 279 (285)
|+++++..+
T Consensus 304 ~P~~av~~~~ 313 (459)
T PRK06082 304 VPIAAMITKD 313 (459)
T ss_pred CcceEEEEcH
Confidence 777776653
No 157
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.84 E-value=6.4e-20 Score=167.05 Aligned_cols=201 Identities=14% Similarity=0.072 Sum_probs=151.8
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcccC---CCCcc-------CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHH
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEVG---DDVYL-------EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~y~-------~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al 133 (285)
.++.|.+...+..++.+.+++.+.... ...++ ......++++.+++++|.+ .+++++|+|+++..++
T Consensus 16 ~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 16 GTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVA 95 (398)
T ss_pred CeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHH
Confidence 457777777777788999998765431 11111 1133678999999999874 3588999999999999
Q ss_pred HHcc---ccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 134 MTHC---DRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 134 ~~~~---~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
.++. .++|++|+++++.|.+... ..... +..|.+++.++.++++.+|++++++++++ ++++|+
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-------~t~lv~ 162 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVA------QQTGAKVVKLPIGADLLPDIRQLPELLTP-------RTRILA 162 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHHHHHHHH------HHcCcEEEEEecCCCCCcCHHHHHHHhcc-------CceEEE
Confidence 8863 2578999999888755311 11222 35688999998876777899999999987 789999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++++|++ |.+.| +++|+++|+++|+++++|++|+ .+.....++|++++|+||.++.+..|+++.++++++
T Consensus 163 i~~~~n~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 237 (398)
T TIGR03392 163 LGQMSNVT-GGCPD---LARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLE 237 (398)
T ss_pred EECccccc-cccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHh
Confidence 99999999 89999 9999999999999999999986 221122468999999999766444577777776653
No 158
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.84 E-value=8e-20 Score=166.61 Aligned_cols=195 Identities=16% Similarity=0.234 Sum_probs=145.5
Q ss_pred eeeccCCcCCCcHHHHHHHHhcccC---CCC---c----cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHc
Q psy5413 69 VDIRSDTISKPTMEMKNYMFNCEVG---DDV---Y----LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 69 ~~~~~~~~~~~~~~v~~a~~~~~~~---~~~---y----~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~ 136 (285)
+.|.+...+..++.+++++.+.... ... + ...+...++++.+++++|.+ .++|++|||+++..++.++
T Consensus 5 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l 84 (402)
T TIGR02006 5 IYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGI 84 (402)
T ss_pred EEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 5566666666788999998665421 111 1 11235778899999999975 4689999999999988765
Q ss_pred c---ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 137 C---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 137 ~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
. .++|++|+++...|.+........ ...|.+++.++.++++.+|++++++++++ ++++|+++++
T Consensus 85 ~~~~~~~g~~Vi~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~v~~~ 151 (402)
T TIGR02006 85 AHFYKSKGNHIITSKTEHKAVLDTCRYL------EREGFEVTYLPPKSNGLIDLEELKAAIRD-------DTILVSIMHV 151 (402)
T ss_pred HHhhcCCCCEEEECCCccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhcCC-------CCEEEEEECC
Confidence 3 247888999888886654322111 23488888888877788999999999977 7899999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcc-eeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAP-VGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~ 280 (285)
+|++ |.+.| +++|.++|+++|+++++|++++ +.. ....++|+++++++|++|.+ .|++++.++
T Consensus 152 ~n~t-G~~~~---~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~ 219 (402)
T TIGR02006 152 NNEI-GVIQD---IAAIGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRK 219 (402)
T ss_pred CcCc-eeccc---HHHHHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccC
Confidence 9999 99999 9999999999999999999988 222 12357899999999987643 444444443
No 159
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.84 E-value=7.7e-20 Score=166.80 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=150.4
Q ss_pred CCeeeeeccCCcC-----CCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHH
Q psy5413 65 NIRTVDIRSDTIS-----KPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGN 129 (285)
Q Consensus 65 ~~~~~~~~~~~~~-----~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~ 129 (285)
|.++++|..+.+. .+.+.+.+++.+..... ..|+......++++.++++++. +.+++++||++|+
T Consensus 30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al 109 (403)
T TIGR01265 30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAI 109 (403)
T ss_pred CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHH
Confidence 5678999988874 36778999888765432 3576667788899999999874 3468999999999
Q ss_pred HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
..++.+++ .+|++|+++.++|..... .. ...|.+++.++.. .++.+|++++++++.+ ++++
T Consensus 110 ~~~~~~l~-~~gd~Vlv~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~~~ 172 (403)
T TIGR01265 110 EICIEALA-NPGANILVPRPGFPLYDT---RA------AFSGLEVRLYDLLPEKDWEIDLDGLEALADE-------KTVA 172 (403)
T ss_pred HHHHHHhC-CCCCEEEEeCCCchhHHH---HH------HHcCCEEEEecCCcccCCccCHHHHHHHhCc-------CccE
Confidence 99999987 689999998887654322 22 3447777777653 2456899999999876 7899
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeE
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGS 274 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg 274 (285)
|++++|+||+ |.+++.+++++|+++|+++|+++|+||+|..+. .+.....++ +.|+||.++. .+.|
T Consensus 173 v~i~~p~NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG 251 (403)
T TIGR01265 173 IVVINPSNPC-GSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLG 251 (403)
T ss_pred EEEecCCCCC-CCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEE
Confidence 9999999999 899999999999999999999999999987221 111222344 8999998654 5666
Q ss_pred Eeec
Q psy5413 275 ILAG 278 (285)
Q Consensus 275 ~~~~ 278 (285)
+++.
T Consensus 252 ~~v~ 255 (403)
T TIGR01265 252 WIII 255 (403)
T ss_pred EEEE
Confidence 7665
No 160
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=99.84 E-value=4.1e-20 Score=169.90 Aligned_cols=235 Identities=17% Similarity=0.154 Sum_probs=150.2
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC----CCccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD----DVYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~----~~y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++..+.|+.- +.++.+|++.+++.+++..- .....++.
T Consensus 32 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~ 93 (445)
T PRK09221 32 PRLLVSAEGMYYTDADGRKILDGTAGLWCC------------------NAGHGRPEIVEAVARQAATLDYAPAFQMGHPL 93 (445)
T ss_pred CceEEeccccEEEeCCCCEEEEccccHhhc------------------cCCCCCHHHHHHHHHHHHhccCccccccCCHH
Confidence 456666777777775544444444333331 34779999999999887631 11124566
Q ss_pred HHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHccccC------CC-eEEe-cCCcceeeecccccccccccccccce
Q psy5413 103 CKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDRR------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~~------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..+|.++|++++. .++++|++|||+|++.|++++.... ++ +||. ...||+.+.....+.....+...++.
T Consensus 94 ~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~ 173 (445)
T PRK09221 94 AFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGG 173 (445)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCC
Confidence 8889999999873 5678999999999999999987421 22 3443 67889877443322211112111111
Q ss_pred ---eeeeeecCC---C--CC--------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 173 ---LMRGVTNQK---D--GT--------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 173 ---~~~~~~~~~---~--~~--------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
.+..++... . .. .+++++++.++.. +.+++++|++|++++..|-...|.+++++|+++|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~ 250 (445)
T PRK09221 174 LLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH---DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDK 250 (445)
T ss_pred CCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc---CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHH
Confidence 112222211 0 00 1245777777542 124799999999998885556778999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
||+++|+||+++++ ....++.++. +.+++|.+++ |+|+++. +++++
T Consensus 251 ~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~-~~~i~ 306 (445)
T PRK09221 251 HGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIA-SDEIY 306 (445)
T ss_pred cCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEE-cHHHH
Confidence 99999999998743 2233444443 5677899975 7777654 45443
No 161
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.84 E-value=2.1e-20 Score=167.72 Aligned_cols=189 Identities=16% Similarity=0.079 Sum_probs=143.2
Q ss_pred CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~ 153 (285)
...++++.+++.+....+..-.......++++.+++++|.+. .+++++|++|+..++.+++ ++|++|++....|..
T Consensus 8 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~-~~g~~vl~~~~~~~~ 86 (356)
T cd06451 8 SNVPPRVLKAMNRPMLGHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL-EPGDKVLVGVNGVFG 86 (356)
T ss_pred cCCCHHHHHHhCCCccCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC-CCCCEEEEecCCchh
Confidence 446789999997654332211123447799999999999732 4788899999999999887 589999987766543
Q ss_pred eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
.. ..... ...|.+++.++.++++.+|++++++.++++ ++++|++++++|++ |.+.| +++|.++
T Consensus 87 ~~-~~~~~------~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~------~~~~v~i~~~~~~~-G~~~~---~~~i~~~ 149 (356)
T cd06451 87 DR-WADMA------ERYGADVDVVEKPWGEAVSPEEIAEALEQH------DIKAVTLTHNETST-GVLNP---LEGIGAL 149 (356)
T ss_pred HH-HHHHH------HHhCCCeEEeecCCCCCCCHHHHHHHHhcc------CCCEEEEeccCCCc-ccccC---HHHHHHH
Confidence 21 01122 345888888887666789999999999752 67999999999998 89999 9999999
Q ss_pred HHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413 234 CQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI 283 (285)
Q Consensus 234 a~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i 283 (285)
|+++|+++++|++|. +. .....++|+++.++|||+++|.| |+++.+++++
T Consensus 150 a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~ 204 (356)
T cd06451 150 AKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERAL 204 (356)
T ss_pred HHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHH
Confidence 999999999999976 22 11224679999999999998644 7887777665
No 162
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.84 E-value=7.1e-20 Score=166.61 Aligned_cols=178 Identities=19% Similarity=0.249 Sum_probs=139.6
Q ss_pred CcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec
Q psy5413 79 PTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE 156 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~ 156 (285)
...+-.+++.+.......|+ .+|...+||+.++++.|.+.++.++||++|+.+++.+++ ++||+||++...|..+..
T Consensus 37 ~~~~~~~~~~~~~~~g~~ysR~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~all-~~GD~VI~~~~~Y~~T~~ 115 (432)
T PRK06702 37 DTSDDLAALFNLEAEGYIYTRIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNIC-SSGDHLLCSSTVYGGTFN 115 (432)
T ss_pred CCHHHHHHHHhccccCceeECCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhc-CCCCEEEECCCchHHHHH
Confidence 34444454444333233353 468899999999999999999999999999999999876 699999998877765543
Q ss_pred cccc-ccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413 157 QGGA-SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235 (285)
Q Consensus 157 ~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~ 235 (285)
.... . ...|+++..+.. .+|+++++++|++ +|++|++++|.||+ +.+.| +++|+++|+
T Consensus 116 ~~~~~l------~~~Gi~v~~vd~----~~d~~~l~~~I~~-------~Tk~I~~e~pgnP~-~~v~D---i~~I~~iA~ 174 (432)
T PRK06702 116 LFGVSL------RKLGIDVTFFNP----NLTADEIVALAND-------KTKLVYAESLGNPA-MNVLN---FKEFSDAAK 174 (432)
T ss_pred HHHHHH------HHCCCEEEEECC----CCCHHHHHHhCCc-------CCeEEEEEcCCCcc-ccccC---HHHHHHHHH
Confidence 2111 1 245777766643 3689999999988 89999999999999 99999 999999999
Q ss_pred HcCCeEEEeCccCChh---hhcccCCeEEEecccccCc---ceeEEeec
Q psy5413 236 EHNIPVHMDGARLPLA---EVCASVDTVMFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 236 ~~gi~li~Dea~~~~~---~~~~~~dv~~~s~sK~l~~---p~gg~~~~ 278 (285)
+||+++|+|+++.... .+..++|+++.|++|+++| -+||+++.
T Consensus 175 ~~gi~livD~T~~tP~~~~pl~~GADIvv~S~TKy~~Ghsd~l~G~v~~ 223 (432)
T PRK06702 175 ELEVPFIVDNTLATPYLCQAFEHGANIIVHSTTKYIDGHASSLGGIVID 223 (432)
T ss_pred HcCCEEEEECCCCchhhCChhhcCCCEEEEccccccCCCcceeceEEEe
Confidence 9999999999987332 3346899999999999999 56777763
No 163
>PRK07036 hypothetical protein; Provisional
Probab=99.84 E-value=7.7e-20 Score=168.93 Aligned_cols=235 Identities=14% Similarity=0.148 Sum_probs=151.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC---CCc--cCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD---DVY--LEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~---~~y--~~~~ 101 (285)
|..+.++.+.+.|+..++.+++.+..|+.- +.++.+|+|.+|+.+++... ..+ ..++
T Consensus 34 p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~ 95 (466)
T PRK07036 34 SLVIVEAEGIYVTDADGRRYLDGIGGMWCV------------------NVGYGREEMADAIADQARRLPYYTPFGDMTNA 95 (466)
T ss_pred CceEEeCceeEEEECCCCEEEECcccHHhh------------------cCCCCCHHHHHHHHHHHHhCcccccccccCCH
Confidence 556667777777776555544444443332 34779999999999887631 122 3466
Q ss_pred hHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCC-eEEe-cCCcceeeecccccccccccccccc
Q psy5413 102 TCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDS-EIIV-GDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 102 ~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
...++.++|++... .+.++|++|||+|++.|++++... +++ +|+. ...||+.+.....+...+.+...++
T Consensus 96 ~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~ 175 (466)
T PRK07036 96 PAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFD 175 (466)
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCccccccc
Confidence 78899999998864 467899999999999999998533 223 3443 5788987743322221111211111
Q ss_pred ---eeeeeeecCCC----CCC--------CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH
Q psy5413 172 ---VLMRGVTNQKD----GTF--------DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236 (285)
Q Consensus 172 ---~~~~~~~~~~~----~~~--------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~ 236 (285)
..+..++.+.. ... .++.+++.+.. .+.+++++|++|++++..|....|++++++|+++|++
T Consensus 176 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~ 252 (466)
T PRK07036 176 YASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS---LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRR 252 (466)
T ss_pred CCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHH---cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHH
Confidence 11222222110 001 13445555542 1345899999999998886667789999999999999
Q ss_pred cCCeEEEeCccCCh-----hhhcc-cCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 237 HNIPVHMDGARLPL-----AEVCA-SVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 237 ~gi~li~Dea~~~~-----~~~~~-~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
||+++|+||+++++ ....+ +.++. +.+++|++++ |+|+++.+ ++++
T Consensus 253 ~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~-~~i~ 309 (466)
T PRK07036 253 YDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIIS-ERLL 309 (466)
T ss_pred cCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEc-HHHH
Confidence 99999999998744 22223 44444 6777899987 77877754 5443
No 164
>PLN02483 serine palmitoyltransferase
Probab=99.84 E-value=4.2e-20 Score=171.79 Aligned_cols=201 Identities=22% Similarity=0.221 Sum_probs=150.4
Q ss_pred cCCeeeeeccCCcCC---Cc----HHHHHHHHhcccC--C--CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHH
Q psy5413 64 VNIRTVDIRSDTISK---PT----MEMKNYMFNCEVG--D--DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIA 132 (285)
Q Consensus 64 ~~~~~~~~~~~~~~~---~~----~~v~~a~~~~~~~--~--~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~a 132 (285)
.+++.++|++.++-+ ++ +.+.+++.+...+ . ..|+..+.+.++|+.+++++|.+..+++++|+.++..+
T Consensus 98 ~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~ 177 (489)
T PLN02483 98 KTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTI 177 (489)
T ss_pred CCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHH
Confidence 357889999887766 22 4666666655432 2 23677888999999999999999898889999999988
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhccc-----ccccCCceE-
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTA-----DNIHCASTS- 206 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~-----~~~~~~~~~- 206 (285)
+.+++ ++||.|++++++|.+...... ..|.+++.++.. |++++++.+++. .+.|.+..+
T Consensus 178 i~al~-~~Gd~Vi~d~~~h~s~~~~~~---------~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~ 242 (489)
T PLN02483 178 IPALI-GKGGLIISDSLNHNSIVNGAR---------GSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKI 242 (489)
T ss_pred HHHhC-CCCCEEEEcchhhHHHHHHHH---------HcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceE
Confidence 88876 699999999999987655333 348888888753 567777666431 111111224
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--------hhh----cccCCeEEEecccccCccee
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--------AEV----CASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--------~~~----~~~~dv~~~s~sK~l~~p~g 273 (285)
+|+++++.+++ |.+.+ +++|+++|++||+++|+||+|+ +. ... ..+.|+++.|+||++++ .|
T Consensus 243 livve~v~s~~-G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G 317 (489)
T PLN02483 243 IVIVEGIYSME-GELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG 317 (489)
T ss_pred EEEECCCCCCC-CcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-Cc
Confidence 66777788888 89999 9999999999999999999986 11 111 13568889999999986 68
Q ss_pred EEeecCccccc
Q psy5413 274 SILAGPEEFIQ 284 (285)
Q Consensus 274 g~~~~~~~~i~ 284 (285)
|++++++++++
T Consensus 318 G~i~~~~~li~ 328 (489)
T PLN02483 318 GYIAGSKELIQ 328 (489)
T ss_pred eEEEcCHHHHH
Confidence 99999888765
No 165
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.84 E-value=4.3e-20 Score=167.58 Aligned_cols=163 Identities=18% Similarity=0.181 Sum_probs=133.3
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++|+.+++++|.+.++.++||++|+..++.+++ ++||+|+++.+.|..+.... ... ...|+++..+
T Consensus 62 ~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~all-~~GD~Vi~~~~~y~~~~~~~~~~~------~~~Gi~v~~v 134 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTFL-KPGDRVVSIKDTYGGTNKIFTEFL------PRMGVDVTLC 134 (398)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhc-CCCCEEEEcCCchHHHHHHHHHHH------hhCCeEEEEc
Confidence 678899999999999999999999999999999998876 68999999888775432111 111 2347776655
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~ 254 (285)
+. .|+++++++|++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|+++.... .+.
T Consensus 135 d~-----~d~e~l~~~i~~-------~tklV~ie~p~NPt-g~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~l~ 198 (398)
T PRK08249 135 ET-----GDHEQIEAEIAK-------GCDLLYLETPTNPT-LKIVD---IERLAAAAKKVGALVVVDNTFATPINQNPLA 198 (398)
T ss_pred CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CccCC---HHHHHHHHHHcCCEEEEECCcCccccCCchh
Confidence 43 489999999987 78999999999999 99999 9999999999999999999988321 233
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ .+||++++++++++
T Consensus 199 ~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~~ 231 (398)
T PRK08249 199 LGADLVIHSATKFLSGHADALGGVVCGSKELME 231 (398)
T ss_pred hCCCEEeccCceecCCCCCceEEEEECCHHHHH
Confidence 5789999999999987 36888988887654
No 166
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.84 E-value=9.4e-20 Score=166.20 Aligned_cols=203 Identities=20% Similarity=0.246 Sum_probs=152.6
Q ss_pred CCeeeeeccCCcCCCcHHHHHHHHhcccC---CCC---cc----CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHH
Q psy5413 65 NIRTVDIRSDTISKPTMEMKNYMFNCEVG---DDV---YL----EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLI 131 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~---y~----~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~ 131 (285)
|+.++.|.....+..++.+.+++.+.... ... +. ......++++.+++++|.+ .+++++|+++++..
T Consensus 16 ~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~ 95 (403)
T TIGR01979 16 GKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINL 95 (403)
T ss_pred CCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHH
Confidence 45678888888887788999998765432 111 10 1124678999999999976 46899999999888
Q ss_pred HHHHcc---ccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 132 AIMTHC---DRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 132 al~~~~---~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
++.++. .++|++|++++..|.+.... .... ...|.+++.++.++++.+|++++++.+++ ++++
T Consensus 96 ~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~------~~~g~~~~~v~~~~~~~~~~~~l~~~i~~-------~~~l 162 (403)
T TIGR01979 96 VAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLA------ERTGATLKFIPLDDDGTLDLDDLEKLLTE-------KTKL 162 (403)
T ss_pred HHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHH------HhcCcEEEEEecCCCCCCCHHHHHHHhcc-------CCeE
Confidence 887641 25789999988877653211 1122 34588888888877788999999999987 7999
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i 283 (285)
|++++++|++ |.++| +++|.++|++||+++|+|++|+ + ......+.|+++.|+||++|.+..|++..+++++
T Consensus 163 v~~~~~~~~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~ 238 (403)
T TIGR01979 163 VAITHVSNVL-GTVNP---VEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELL 238 (403)
T ss_pred EEEEcccccc-cccCC---HHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHH
Confidence 9999999999 99999 9999999999999999999987 2 1112246899999999987643337777776654
Q ss_pred c
Q psy5413 284 Q 284 (285)
Q Consensus 284 ~ 284 (285)
+
T Consensus 239 ~ 239 (403)
T TIGR01979 239 E 239 (403)
T ss_pred h
Confidence 3
No 167
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.84 E-value=2.6e-20 Score=166.38 Aligned_cols=195 Identities=23% Similarity=0.257 Sum_probs=147.1
Q ss_pred eeeeeccCCc-CCC-cHHHHHHHHhcccCC-C-------CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 67 RTVDIRSDTI-SKP-TMEMKNYMFNCEVGD-D-------VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 67 ~~~~~~~~~~-~~~-~~~v~~a~~~~~~~~-~-------~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
+++.|.+..+ +.+ ||++.+++++..... . .++..+...++++.++++++.+..+++++|++++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~ 81 (349)
T cd06454 2 KVLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTL 81 (349)
T ss_pred CceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHh
Confidence 4566665443 444 789999998877521 1 12456778999999999999988899999999999998887
Q ss_pred cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
+ ++||+|++++++|....... ...|.+++.++. .|.+++++.+++.. +..++++|++++++|+
T Consensus 82 ~-~~gd~Vl~~~~~~~~~~~~~---------~~~g~~~~~~~~-----~~~~~le~~i~~~~--~~~~~~~v~~~~~~~~ 144 (349)
T cd06454 82 A-GKGDLIISDSLNHASIIDGI---------RLSGAKKRIFKH-----NDMEDLEKLLREAR--RPYGKKLIVTEGVYSM 144 (349)
T ss_pred c-CCCCEEEEehhhhHHHHHHH---------HHcCCceEEecC-----CCHHHHHHHHHHhh--ccCCCeEEEEeccccC
Confidence 6 68999999988886654322 233677766653 47888999887521 1236789999999999
Q ss_pred CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283 (285)
Q Consensus 217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i 283 (285)
+ |.+.| +++|+++|++||+++|+||+|. +... ...+.|+++.|+||++++ .||+++.+++++
T Consensus 145 t-G~~~~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~i~~~~~~~ 218 (349)
T cd06454 145 D-GDIAP---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VGGYIAGSKELI 218 (349)
T ss_pred C-CCccC---HHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cCCEEECCHHHH
Confidence 9 88888 9999999999999999999986 2110 123567889999999987 578888877764
No 168
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.84 E-value=5.5e-20 Score=167.37 Aligned_cols=199 Identities=18% Similarity=0.189 Sum_probs=150.0
Q ss_pred eeeeccCCcCCCcHHHHHHHHhcccCC-----CCccC----ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHc
Q psy5413 68 TVDIRSDTISKPTMEMKNYMFNCEVGD-----DVYLE----DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 68 ~~~~~~~~~~~~~~~v~~a~~~~~~~~-----~~y~~----~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~ 136 (285)
.+.|.+...+.+++.+++++.+..... ..|.. .+...++++.+++++|.+. +++++|+++++..++.++
T Consensus 18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~ 97 (397)
T TIGR01976 18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAI 97 (397)
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHH
Confidence 477777777778889999987765321 12321 2346799999999998753 688888899887766654
Q ss_pred --cccCCCeEEecCCcceeeecc-cccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 137 --CDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 137 --~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
..++|++|++.++.|.+.... ...+ ...|.+++.++.++ ++.+|++++++++++ ++++|++++
T Consensus 98 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~-------~~~lv~i~~ 164 (397)
T TIGR01976 98 SRRWGPGDEVIVTRLDHEANISPWLQAA------ERAGAKVKWARVDEATGELHPDDLASLLSP-------RTRLVAVTA 164 (397)
T ss_pred HhcCCCCCEEEEcCCchHhHHHHHHHHH------HhcCCEEEEEeccccCCCcCHHHHHHhcCC-------CceEEEEeC
Confidence 225899999988877554311 1122 34588888887754 577899999999977 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|+|++ |.+.| +++|+++|++||+++|+|+++. + .... ..++|++++|+|||+|. ..|+++.++++++
T Consensus 165 ~~n~t-G~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~-~~G~l~~~~~~~~ 235 (397)
T TIGR01976 165 ASNTL-GSIVD---LAAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGP-HMGILWGRPELLM 235 (397)
T ss_pred CCCCC-CccCC---HHHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCC-ceEEEEEcHHHHh
Confidence 99999 89999 9999999999999999999987 1 1122 24789999999999864 5778877777654
No 169
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.84 E-value=6.5e-20 Score=167.66 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=128.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.+++++|.+.+++++||++|+..++.+++ ++|++|++.+..|..+... .... ...|.+++.+
T Consensus 55 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l~-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v 127 (418)
T TIGR01326 55 MNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNLA-QAGDNIVSSSYLYGGTYNLFKHTL------KRLGIEVRFV 127 (418)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEECCCcHHHHHHHHHHH------HHcCcEEEEE
Confidence 567799999999999999989999999999999998877 5899998877655332211 0111 2457787777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|++++.. ..+.
T Consensus 128 ~~~-----d~~~l~~~l~~-------~t~~V~le~p~NPt-g~v~d---l~~I~~la~~~~i~livD~t~~~~~~~~~l~ 191 (418)
T TIGR01326 128 DPD-----DPEEFEKAIDE-------NTKAVFAETIGNPA-INVPD---IEAIAEVAHAHGVPLIVDNTFATPYLCRPID 191 (418)
T ss_pred CCC-----CHHHHHHhcCc-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCchhhcCCchh
Confidence 642 89999999987 78999999999999 89999 999999999999999999998722 1223
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCcc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEE 281 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~ 281 (285)
.++|+++.|++|++++ .+||+++.+++
T Consensus 192 ~g~Divv~S~sK~l~g~G~~lGg~v~~~~~ 221 (418)
T TIGR01326 192 HGADIVVHSATKYIGGHGTAIGGVIVDGGK 221 (418)
T ss_pred cCCeEEEECccccccCCccceEEEEEeccc
Confidence 4689999999999987 57887776544
No 170
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.84 E-value=8.6e-20 Score=164.85 Aligned_cols=186 Identities=20% Similarity=0.217 Sum_probs=141.7
Q ss_pred CCcHHHHHHHHhcccCC---CC---ccC----ChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 78 KPTMEMKNYMFNCEVGD---DV---YLE----DPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 78 ~~~~~v~~a~~~~~~~~---~~---y~~----~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
.+++.+.+++.+..... .. |.. .+...++++.+++++|.+ .+++++|+++++..++...+ ++|++|
T Consensus 11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~-~~gd~v 89 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLL-KEGDHV 89 (376)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhcc-CCCCEE
Confidence 35568888877654421 11 211 255789999999999864 35888999999999998866 589999
Q ss_pred EecCCcceeeecc-cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413 145 IVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 145 i~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
+++...|...... .... +..|.+++.++.++++.+|++++++++++ ++++|++++++|++ |.++|
T Consensus 90 l~~~~~~~~~~~~~~~~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~-------~~~~v~~~~~~n~t-G~~~~ 155 (376)
T TIGR01977 90 ITTPMEHNSVARPLECLK------EQIGVEITIVKCDNEGLISPERIKRAIKT-------NTKLIVVSHASNVT-GTILP 155 (376)
T ss_pred EECcchhhHHHHHHHHHH------HHcCcEEEEEecCCCCCcCHHHHHHhcCC-------CCeEEEEECCCCCc-cccCC
Confidence 9988777554221 1122 34488888888767778899999999976 78999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCccee--EEeecCcc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVG--SILAGPEE 281 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~g--g~~~~~~~ 281 (285)
+++|.++|+++|+++|+|++++ +. .....++|+++++++||+++|.| ++++.++.
T Consensus 156 ---~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~ 216 (376)
T TIGR01977 156 ---IEEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI 216 (376)
T ss_pred ---HHHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc
Confidence 8999999999999999999987 22 22236899999999999988643 55555543
No 171
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.84 E-value=4.5e-20 Score=167.79 Aligned_cols=200 Identities=22% Similarity=0.228 Sum_probs=149.3
Q ss_pred CCeeeeeccCC-cCC-CcHHHHHHHHhcccC-CCC-------ccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG-DDV-------YLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~-~~~-------y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|+++++|..+. ++. ++|++.+++.+.... ... .+..+...++++.+++++|.+..+++++|++++..+++
T Consensus 41 g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~ 120 (397)
T PRK06939 41 GKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFE 120 (397)
T ss_pred CCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHH
Confidence 77889999776 455 577899988876542 111 13345677899999999998878888889999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ ++||+|++++++|........ ..+.+++.++. .|++++++.+++... ...++++|++++++
T Consensus 121 ~l~-~~gd~vi~~~~~~~~~~~~~~---------~~~~~~~~~~~-----~d~~~l~~~i~~~~~-~~~~~~~v~~~~v~ 184 (397)
T PRK06939 121 TLL-GKEDAIISDALNHASIIDGVR---------LCKAKRYRYAN-----NDMADLEAQLKEAKE-AGARHKLIATDGVF 184 (397)
T ss_pred HhC-CCCCEEEEEhhhhHHHHHHHH---------hcCCceEEeCC-----CCHHHHHHHHHhhhc-cCCCCeEEEEecCc
Confidence 876 699999999998866543222 22555555543 488999988864211 12267899988889
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--------h---hcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------E---VCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------~---~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
|++ |.+.+ +++|.++|++||+++|+||+|. +.. . +....|+++.|+||+++++++|++++++++
T Consensus 185 ~~~-G~~~~---~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~ 260 (397)
T PRK06939 185 SMD-GDIAP---LPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEV 260 (397)
T ss_pred CCC-CCcCC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHH
Confidence 988 77777 9999999999999999999985 211 1 112457889999999977789999988776
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 261 ~~ 262 (397)
T PRK06939 261 ID 262 (397)
T ss_pred HH
Confidence 54
No 172
>PRK14012 cysteine desulfurase; Provisional
Probab=99.84 E-value=1e-19 Score=166.02 Aligned_cols=195 Identities=18% Similarity=0.283 Sum_probs=145.2
Q ss_pred eeeccCCcCCCcHHHHHHHHhccc--C---CCC-------ccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHH
Q psy5413 69 VDIRSDTISKPTMEMKNYMFNCEV--G---DDV-------YLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIM 134 (285)
Q Consensus 69 ~~~~~~~~~~~~~~v~~a~~~~~~--~---~~~-------y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~ 134 (285)
+.|.+...+..++.+.+++.+... . ... +...+...++++.+++++|.+. +++++||++|+..++.
T Consensus 5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~ 84 (404)
T PRK14012 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIK 84 (404)
T ss_pred EEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHH
Confidence 566666666678899999876543 1 110 1112457788999999999754 7899999999999987
Q ss_pred Hcc---ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 135 THC---DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 135 ~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
++. .++|++|++++..|.+........ ...|.+++.++.++++.+|+++|+++|++ ++++|+++
T Consensus 85 ~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~------~~~g~~~~~v~~~~~g~~d~~~l~~~i~~-------~t~lv~~~ 151 (404)
T PRK14012 85 GAAHFYQKKGKHIITSKTEHKAVLDTCRQL------EREGFEVTYLDPQSNGIIDLEKLEAAMRD-------DTILVSIM 151 (404)
T ss_pred HHHHhhcCCCCEEEEecCccHHHHHHHHHH------HhCCCEEEEEccCCCCcCCHHHHHHhcCC-------CCEEEEEE
Confidence 754 257899999888885543211111 22478888888777788999999999987 78999999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---hhcccCCeEEEecccccCcc-eeEEeecCc
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA---EVCASVDTVMFCLSKGLGAP-VGSILAGPE 280 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~---~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~ 280 (285)
+++|++ |.++| +++|.++|+++|+++|+|++++ +.. ....++|+++++++|.++.+ .|++++.++
T Consensus 152 ~~~n~t-G~~~~---~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~ 221 (404)
T PRK14012 152 HVNNEI-GVIQD---IAAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRK 221 (404)
T ss_pred CcCCCc-cchhh---HHHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecC
Confidence 999999 99999 9999999999999999999987 211 12246899999999977642 344444443
No 173
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.84 E-value=5.7e-20 Score=168.05 Aligned_cols=214 Identities=21% Similarity=0.219 Sum_probs=146.0
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCCcc----CChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDVYL----EDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~y~----~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++ ..++.+|++.+++.+++.....|. ..+...++++.++++++ .+.+++++||++|++.+++
T Consensus 35 G~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~ 114 (413)
T cd00610 35 GNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALK 114 (413)
T ss_pred CCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHH
Confidence 6778888764 234589999999988775333222 36779999999999998 6778999999999999999
Q ss_pred Hccc-cCCCeEEe-cCCcceeeeccccccccccccc---ccceeeeeeecCC------CCCCCHHHHHHHhcccccccCC
Q psy5413 135 THCD-RRDSEIIV-GDCSHIMLWEQGGASQTSVYSQ---IGRVLMRGVTNQK------DGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 135 ~~~~-~~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~------~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
++.. ..++.|++ ...+|++............+.. .....++.+|.++ +...|+++|++.+++ +.+
T Consensus 115 ~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~ 190 (413)
T cd00610 115 LARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE----HPE 190 (413)
T ss_pred HHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc----CCC
Confidence 8753 24566666 4567876543222220010111 1123345555532 123488999999876 334
Q ss_pred ceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc--cee
Q psy5413 204 STSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVG 273 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~g 273 (285)
++++|++++.++++ |.+ .+.+++++|+++|++||+++|+||+|+++. ......++. +.+++|++++ |.|
T Consensus 191 ~~~~vi~~p~~~~~-G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~~~g 269 (413)
T cd00610 191 EVAAVIVEPIQGEG-GVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGLPLG 269 (413)
T ss_pred CEEEEEEccccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCccccE
Confidence 78999999998888 554 578889999999999999999999988431 111222221 5678899987 555
Q ss_pred EEeecCccccc
Q psy5413 274 SILAGPEEFIQ 284 (285)
Q Consensus 274 g~~~~~~~~i~ 284 (285)
+ +++++++++
T Consensus 270 ~-~~~~~~~~~ 279 (413)
T cd00610 270 A-VLGREEIMD 279 (413)
T ss_pred E-EEEcHHHHH
Confidence 5 556676654
No 174
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.84 E-value=1.1e-19 Score=166.22 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=131.4
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....|++.++++.|.+.+++++||++|+..++..++ ++||+|+++++.|..+.... ... ...|.+++.+
T Consensus 62 ~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll-~~GD~Vlv~~~~y~~t~~~~~~~~------~~~Gv~v~~v 134 (431)
T PRK08248 62 MNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIA-SAGDEIVSSSSLYGGTYNLFAHTL------PKLGITVKFV 134 (431)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEccCchhhHHHHHHHHH------HhCCEEEEEE
Confidence 578899999999999999999999999999999998876 69999999887664432211 112 3458888888
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~ 254 (285)
+. .|+++++++|++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|++++. ...+.
T Consensus 135 d~-----~d~e~l~~ai~~-------~tklV~l~sp~NPt-G~v~d---i~~I~~la~~~gi~vIvD~t~a~~~~~~pl~ 198 (431)
T PRK08248 135 DP-----SDPENFEAAITD-------KTKALFAETIGNPK-GDVLD---IEAVAAIAHEHGIPLIVDNTFASPYLLRPIE 198 (431)
T ss_pred CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEeCCCCccccCChhH
Confidence 75 389999999987 78999999999999 99999 99999999999999999999872 22234
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~ 280 (285)
.++|+++.|++|++++ .+||+++.+.
T Consensus 199 ~gaDivv~S~tK~lgg~g~~~Gg~v~~~~ 227 (431)
T PRK08248 199 HGADIVVHSATKFIGGHGTSIGGVIVDSG 227 (431)
T ss_pred cCCCEEEEcCccccCCCCCceEEEEEeCC
Confidence 6899999999999998 4788777543
No 175
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.84 E-value=2.3e-20 Score=168.06 Aligned_cols=163 Identities=12% Similarity=0.061 Sum_probs=129.6
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....||+.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|.++..+
T Consensus 48 gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all-~~GD~Vl~~~~~y~~t~~~~~~~~------~~~gi~v~~~ 120 (377)
T TIGR01324 48 GTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFV-KAGDHVLMVDSAYEPTRYFCDIVL------KRMGVDITYY 120 (377)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhc-CCCCEEEEcCCCcHHHHHHHHHHH------HhcCcEEEEE
Confidence 568899999999999999999999999999999999876 69999998776654332211 111 2346666555
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~ 254 (285)
+.. +.+++++++++ ++++|++++|+|++ |.+.+ |++|+++|+++|+++|+|++|+ +. ..+.
T Consensus 121 d~~-----~~e~l~~~i~~-------~tklV~lesp~Np~-g~~~d---l~~I~~la~~~g~~livD~t~a~g~~~~pl~ 184 (377)
T TIGR01324 121 DPL-----IGEDIATLIQP-------NTKVLFLEAPSSIT-FEIQD---IPAIAKAARNPGIVIMIDNTWAAGLLFKPLE 184 (377)
T ss_pred CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCccccccCccc
Confidence 331 33789999887 89999999999998 88888 9999999999999999999988 22 2445
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|+++| ..||+++++++.++
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~~~ 217 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANARTWD 217 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHHHHH
Confidence 6899999999999998 46788888776543
No 176
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.84 E-value=6.3e-20 Score=170.87 Aligned_cols=192 Identities=15% Similarity=0.133 Sum_probs=140.2
Q ss_pred HHHHHHHhccc----CCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 82 EMKNYMFNCEV----GDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 82 ~v~~a~~~~~~----~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
.+++++.+... +...|+...+..+|++.++++++ .+.+++++|+++|+..++++++..+||+|+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~P 171 (481)
T PTZ00377 92 DVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPIP 171 (481)
T ss_pred HHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECCC
Confidence 56666554322 12457777778999999999864 2346899999999999999876348999999988
Q ss_pred cceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL 227 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l 227 (285)
+|....... ...|.+++.++.++ ++.+|+++|++++++..+ .+.++++|++++|+||| |.+++.+++
T Consensus 172 ~y~~y~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~k~l~l~~P~NPT-G~~~s~e~~ 240 (481)
T PTZ00377 172 QYPLYSAAI---------TLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVR-NGITPRALVVINPGNPT-GQVLTRDVM 240 (481)
T ss_pred CchhHHHHH---------HHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHh-cCCCeeEEEEECCCCCC-CcCCCHHHH
Confidence 875543322 24488888888753 356899999999864211 12368999999999999 999999999
Q ss_pred HHHHHHHHHcCCeEEEeCccCChh-----------h----hcccC----CeE-EEeccccc-C--cceeEEeec---Ccc
Q psy5413 228 RELKARCQEHNIPVHMDGARLPLA-----------E----VCASV----DTV-MFCLSKGL-G--APVGSILAG---PEE 281 (285)
Q Consensus 228 ~~i~~la~~~gi~li~Dea~~~~~-----------~----~~~~~----dv~-~~s~sK~l-~--~p~gg~~~~---~~~ 281 (285)
++|+++|++||+++|+||+|..+. . +.... .++ +.|+||.+ + |.+.|+++. +++
T Consensus 241 ~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~ 320 (481)
T PTZ00377 241 EEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE 320 (481)
T ss_pred HHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH
Confidence 999999999999999999976211 0 01111 244 78999974 3 577888774 676
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 321 li~ 323 (481)
T PTZ00377 321 VRE 323 (481)
T ss_pred HHH
Confidence 654
No 177
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.84 E-value=1.1e-19 Score=163.01 Aligned_cols=193 Identities=18% Similarity=0.217 Sum_probs=141.0
Q ss_pred cCCcCCCcHHHHHHHHhcccC---C-C--Cc--c--CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccc--
Q psy5413 73 SDTISKPTMEMKNYMFNCEVG---D-D--VY--L--EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCD-- 138 (285)
Q Consensus 73 ~~~~~~~~~~v~~a~~~~~~~---~-~--~y--~--~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~-- 138 (285)
+...+..++.+++++.+.... . . .+ + ......++++.+++++|.+ .++|++|+++++..++.++..
T Consensus 4 ~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~ 83 (353)
T TIGR03235 4 HNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARAG 83 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc
Confidence 334455678899998765421 1 1 11 1 1134678999999999875 468888899999999887652
Q ss_pred -cCC-CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 139 -RRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 139 -~~g-~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
.+| +.|++....|.+........ ...|.+++.++.++++.+|++++++++++ ++++|++++++|+
T Consensus 84 ~~~g~~~vi~~~~~~~s~~~~~~~~------~~~G~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~~~~~~n~ 150 (353)
T TIGR03235 84 EQKGKKHIITSAIEHPAVLEPIRAL------ERNGFTVTYLPVDESGRIDVDELADAIRP-------DTLLVSIMHVNNE 150 (353)
T ss_pred ccCCCCeeeEcccccHHHHHHHHHH------HhcCCEEEEEccCCCCcCCHHHHHHhCCC-------CCEEEEEEcccCC
Confidence 245 56787777775543321111 23488888888877788999999999976 7899999999999
Q ss_pred CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
+ |.+.| +++|.++|+++|+++|+|++++ + ......++|+++++++|+++.+-.|++..+++.
T Consensus 151 t-G~~~~---~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~ 216 (353)
T TIGR03235 151 T-GSIQP---IREIAEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRG 216 (353)
T ss_pred c-eeccC---HHHHHHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCc
Confidence 9 99999 9999999999999999999977 2 222235799999999999653334666555543
No 178
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.84 E-value=1.1e-19 Score=165.22 Aligned_cols=199 Identities=18% Similarity=0.127 Sum_probs=152.5
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIA 132 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~a 132 (285)
..+++|..+++.. +.+.+.+++.+.... ...|+......++++.++++++ .+.+++++|+++++..+
T Consensus 33 ~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~ 112 (394)
T PRK06836 33 DNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVA 112 (394)
T ss_pred CCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHH
Confidence 4568998888765 456888887654432 3457666778889999999874 34468999999999999
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
+..++ .+|+.|+++++++..... .. ...|.+++.++.+++ +.+|++++++++++ ++++|+++
T Consensus 113 ~~~l~-~~gd~Vli~~p~~~~~~~---~~------~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~-------~~~~v~~~ 175 (394)
T PRK06836 113 LKAIL-NPGDEVIVFAPYFVEYRF---YV------DNHGGKLVVVPTDTDTFQPDLDALEAAITP-------KTKAVIIN 175 (394)
T ss_pred HHHhc-CCCCEEEEcCCCCccHHH---HH------HHcCCEEEEEecCCccCcCCHHHHHhhcCc-------CceEEEEe
Confidence 98877 589999998877654322 22 345889999887555 57899999999977 78999999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHH------cCCeEEEeCccCChh-------hhcccC--CeEEEecccccCc--ceeE
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQE------HNIPVHMDGARLPLA-------EVCASV--DTVMFCLSKGLGA--PVGS 274 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~------~gi~li~Dea~~~~~-------~~~~~~--dv~~~s~sK~l~~--p~gg 274 (285)
+|+||+ |.++|.+++++|+++|++ ||+++|+||+|..+. ...... .+++.|+||.++. .+.|
T Consensus 176 ~p~NPt-G~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG 254 (394)
T PRK06836 176 SPNNPT-GVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIG 254 (394)
T ss_pred CCCCCC-CcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeE
Confidence 999999 999999999999999999 899999999987221 111112 3458999999874 5677
Q ss_pred EeecCccc
Q psy5413 275 ILAGPEEF 282 (285)
Q Consensus 275 ~~~~~~~~ 282 (285)
+++.++++
T Consensus 255 ~~~~~~~~ 262 (394)
T PRK06836 255 YIAVNPEM 262 (394)
T ss_pred EEecCHHH
Confidence 78776654
No 179
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.84 E-value=1.2e-19 Score=165.54 Aligned_cols=201 Identities=15% Similarity=0.116 Sum_probs=151.8
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcccCCC------Cc----cCChhHHHHHHHHHhHcCC-C--cEEEcCChHHHHHHHH
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEVGDD------VY----LEDPTCKELQEKAAKLAGK-E--AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~------~y----~~~~~~~~l~~~la~~~g~-~--~~~~~~~Gs~a~~~al 133 (285)
..+.|.+...+..+..+.+++.+...... .+ .......++++.+++++|. + .+++++|+++++..++
T Consensus 19 ~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~ 98 (401)
T PRK10874 19 AGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVA 98 (401)
T ss_pred ceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHH
Confidence 35677777777777899999876554211 11 1123477899999999997 3 3588999999999999
Q ss_pred HHcc---ccCCCeEEecCCcceeee-cccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 134 MTHC---DRRDSEIIVGDCSHIMLW-EQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 134 ~~~~---~~~g~~vi~~~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
.++. .++|++|++.++.|.+.. ...... +..|.+++.++.++++.+|++++++++++ ++++|+
T Consensus 99 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~ 165 (401)
T PRK10874 99 QSYARPRLQPGDEIIVSEAEHHANLVPWLMVA------QQTGAKVVKLPLGADRLPDVDLLPELITP-------RTRILA 165 (401)
T ss_pred HHhhhccCCCcCEEEECCcchHHHHHHHHHHH------HHhCCEEEEEecCCCCcCCHHHHHHhcCc-------CcEEEE
Confidence 8873 257899999988875431 111222 34588899988877778899999999977 889999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++++|+| |.+.| +++|+++|+++|+++|+|++|+ .+.....++|+++.|+||.+|.+..|++..++++++
T Consensus 166 i~~~~n~t-G~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 240 (401)
T PRK10874 166 LGQMSNVT-GGCPD---LARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLE 240 (401)
T ss_pred EeCCcccc-cCcCC---HHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHh
Confidence 99999999 89999 9999999999999999999996 111112468999999999765443478777777654
No 180
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.84 E-value=7.2e-20 Score=166.54 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=137.9
Q ss_pred CCeeeeeccCCc----CCCcHHHHHHHHhcccCC---CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc
Q psy5413 65 NIRTVDIRSDTI----SKPTMEMKNYMFNCEVGD---DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 65 ~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~~---~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|++++||.++.+ ++.+|++.+++.+++... ......+...++++.++++.+.+.+++++||++|++.++++++
T Consensus 38 g~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~ 117 (396)
T PRK02627 38 GKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLAR 117 (396)
T ss_pred CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHH
Confidence 566677765432 445799999998876531 1112467788999999999999999999999999999999876
Q ss_pred ccCC------CeEEe-cCCcceeeecccccccccccccccc---eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 138 DRRD------SEIIV-GDCSHIMLWEQGGASQTSVYSQIGR---VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 138 ~~~g------~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
...+ +.+++ ...+|+.............+...+. ..+..++ ..|++++++++.+ ++++
T Consensus 118 ~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~-------~~~~ 185 (396)
T PRK02627 118 KYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLVEGFIYVP-----FNDIEALKAAITD-------KTAA 185 (396)
T ss_pred HHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCCCCceEeC-----CCCHHHHHHhcCC-------CeEE
Confidence 4222 34554 4566765433222210000000000 0001111 2389999999965 7999
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeec
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~ 278 (285)
|++++++|++|..+++++++++|+++|++||+++|+||+|+++.. .....++. +.++||.+++ |.|+ +++
T Consensus 186 vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G~rig~-~~~ 264 (396)
T PRK02627 186 VMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGVPIGA-VLA 264 (396)
T ss_pred EEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCCcccEE-EEE
Confidence 999999999855889999999999999999999999999884321 11112211 4578999986 5555 555
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 265 ~~~~~~ 270 (396)
T PRK02627 265 KEKVAD 270 (396)
T ss_pred cHHHHh
Confidence 565543
No 181
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=99.83 E-value=7.7e-20 Score=168.79 Aligned_cols=237 Identities=19% Similarity=0.163 Sum_probs=147.7
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCC--C--ccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDD--V--YLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~--~--y~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.++.|+. .+.++.||+|.+|+.+++.... . ...++.
T Consensus 37 ~~~~~~~~G~~l~D~dG~~ylD~~~g~~~------------------~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~ 98 (451)
T PRK06918 37 PTFAQSANGALVTDVDGNQYIDFAGAIGT------------------INVGHSHPKVKEALHKQVDQYIHTGFNVMMYEP 98 (451)
T ss_pred CceEEeccccEEEeCCCCEEEEcCCchhh------------------cCCCCCCHHHHHHHHHHHHhccCccccccccHH
Confidence 44555666777776554444444443332 1347799999999998876421 1 123567
Q ss_pred HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCCe-EEe-cCCcceeeecccccccc-cccccccce---e
Q psy5413 103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIGRV---L 173 (285)
Q Consensus 103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g~---~ 173 (285)
..++.++|++++.. +.++|++|||+|++.|++++...+|+. |+. ...||+.+.....+... ..+...++. .
T Consensus 99 ~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~ 178 (451)
T PRK06918 99 YIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPE 178 (451)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCC
Confidence 88999999999752 478999999999999999998666654 333 57889887543332211 112111111 1
Q ss_pred eeeeecCC-----CCCC-------CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413 174 MRGVTNQK-----DGTF-------DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241 (285)
Q Consensus 174 ~~~~~~~~-----~~~~-------d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l 241 (285)
+..+|.+. .+.. .++.+++.+.. ..+.+++++|++|+.++..|..+.+.+++++|+++|++||+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gill 256 (451)
T PRK06918 179 VYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFIS--EVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILF 256 (451)
T ss_pred cEEcCCCccccccccCchHHHHHHHHHHHHHHHHh--hcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 22222211 1100 02234444321 0123489999999999887444666788999999999999999
Q ss_pred EEeCccCChh-----hhcccCCeE--EEecccccCc--ceeEEeecCccccc
Q psy5413 242 HMDGARLPLA-----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 242 i~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|+||+++++. ......++. +.+++|.+++ |+|+++ +++++++
T Consensus 257 I~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~pig~v~-~~~~i~~ 307 (451)
T PRK06918 257 VADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGVPISGVI-GRKEIMD 307 (451)
T ss_pred EEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCCccEEEE-EcHHHHh
Confidence 9999988432 112233332 6688999987 666544 5565543
No 182
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.83 E-value=2.9e-20 Score=172.36 Aligned_cols=199 Identities=15% Similarity=0.076 Sum_probs=147.3
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc------C---C---CcEEEcCChHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA------G---K---EAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~------g---~---~~~~~~~~Gs~a~~~al 133 (285)
+.++++..+.+..+.|+.+..+.+...++ .|.......++++.+++.+ + . +.++.++|+++|+..++
T Consensus 100 ~~~i~l~~g~p~~~~~~~v~e~~~~~~~~-~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~ 178 (527)
T PRK09275 100 RDAVSYVRDQLGFDADEFVYELVDGIIGD-NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIF 178 (527)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence 45688888888887665444455555554 4887778888999988732 1 1 14678888999999888
Q ss_pred HH-----ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceE
Q psy5413 134 MT-----HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 134 ~~-----~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
.+ ++ .+||+|+++++++........+. ..+.+++.++.. .++.+|++++++++++ +++
T Consensus 179 ~aL~~~~ll-~pGD~Vlv~~P~y~~Y~~~~~l~-------g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-------~tk 243 (527)
T PRK09275 179 DSLKENGLL-KAGDKIALMTPIFTPYLEIPELP-------RYDLEVVHINADEENEWQYPDSELEKLRDP-------SIK 243 (527)
T ss_pred HHHhhhhcC-CCCCEEEEeCCChHHHHHHHHHc-------CCCeEEEEeecCcccCCCCCHHHHHhhcCC-------CCC
Confidence 86 34 69999999988875543322222 235677777643 3467899999998877 899
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHH--cCCeEEEeCccCChh-------hhcccCCeEEEecccccCc--ceeEE
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQE--HNIPVHMDGARLPLA-------EVCASVDTVMFCLSKGLGA--PVGSI 275 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~--~gi~li~Dea~~~~~-------~~~~~~dv~~~s~sK~l~~--p~gg~ 275 (285)
+|++++|+||| |.+++.+++++|+++|++ +|++||+||+|..+. .....--+++.|+||.+++ .+.|+
T Consensus 244 ai~l~nP~NPT-G~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~RlG~ 322 (527)
T PRK09275 244 ALFLVNPSNPP-SVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRLGV 322 (527)
T ss_pred EEEEeCCcCCc-CCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHHhh
Confidence 99999999999 999999999999999965 599999999987322 1111112448999999865 77888
Q ss_pred eecCcc
Q psy5413 276 LAGPEE 281 (285)
Q Consensus 276 ~~~~~~ 281 (285)
++++++
T Consensus 323 i~~~~~ 328 (527)
T PRK09275 323 IALHED 328 (527)
T ss_pred hhcCch
Confidence 888775
No 183
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=2.9e-20 Score=167.00 Aligned_cols=197 Identities=19% Similarity=0.160 Sum_probs=147.7
Q ss_pred eeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 67 RTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 67 ~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
.+++|..+. +.+++|.+.+++.+.... ..|.+.....++++.++++++.+ .+++++|+++++..++.+++ ++|+.
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~~~~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd~ 107 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-LALYPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALL-NPGTN 107 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-hhcCCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHHh-CCCCE
Confidence 568887654 444788999998776543 33445567889999999999864 46888989999998888876 58999
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
|+++++++...... . ...|.+++.++.. ++.+|++++++++++ ++++|++++|+||| |.+++
T Consensus 108 v~~~~p~y~~~~~~---~------~~~g~~~~~~~~~-~~~~d~~~l~~~~~~-------~~~~v~i~~p~NPt-G~~~~ 169 (359)
T PRK03158 108 TVMAEPTFSQYRHN---A------IIEGAEVREVPLK-DGGHDLEAMLKAIDE-------QTKIVWICNPNNPT-GTYVN 169 (359)
T ss_pred EEEcCCCHHHHHHH---H------HHcCCeEEEEecC-CCCcCHHHHHHhcCC-------CCCEEEEeCCCCCC-CCCCC
Confidence 99988776443221 1 2347888888875 567899999998876 78999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++.++++.|+ +|+++|+||+|..+. ...... .+++.|+||.++. .+.|++++++++++
T Consensus 170 ~~~l~~~~~~~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~ 242 (359)
T PRK03158 170 HEELLSFLESVP-SHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIE 242 (359)
T ss_pred HHHHHHHHHhCC-CCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHH
Confidence 877777777664 699999999986211 111122 2448999999874 66788888887664
No 184
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.83 E-value=9.4e-20 Score=164.94 Aligned_cols=196 Identities=22% Similarity=0.301 Sum_probs=147.0
Q ss_pred CCeeeeeccCC-cCC-CcHHHHHHHHhcccC----CC----CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG----DD----VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~----~~----~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++. +++ ++|++++++.++... .. .++..+...++++.++++++.+..+++++|++++..+++
T Consensus 38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~ 117 (385)
T PRK05958 38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLT 117 (385)
T ss_pred CceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence 78889999764 344 678999999876642 11 123456789999999999998888889999999998888
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
.++ ++||.|++.+++|........ ..|..++.++. .|++++++.+++. ..+++++++++++
T Consensus 118 ~~~-~~gd~V~~~~~~~~~~~~~~~---------~~g~~~~~~~~-----~d~~~l~~~i~~~----~~~~~lvi~~~~~ 178 (385)
T PRK05958 118 ALA-GKGDLIVSDKLNHASLIDGAR---------LSRARVRRYPH-----NDVDALEALLAKW----RAGRALIVTESVF 178 (385)
T ss_pred HhC-CCCCEEEEeCccCHHHHHHHH---------hcCCceEEeCC-----CCHHHHHHHHHhc----cCCCeEEEEEecc
Confidence 776 689999999988876543222 23666666654 3889999998651 1246788888899
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-----------hcccCC-eEEEecccccCcceeEEeecCcc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE-----------VCASVD-TVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~-----------~~~~~d-v~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+++ |...+ +++|+++|++||+++|+||+|. +... +....| +++.|+||++++ .||+++.+++
T Consensus 179 ~~~-G~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~Gg~~~~~~~ 253 (385)
T PRK05958 179 SMD-GDLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SGAAVLGSET 253 (385)
T ss_pred cCC-CCcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CCcEEEcCHH
Confidence 988 88888 9999999999999999999986 2111 112234 558999999975 5678888776
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 254 ~~~ 256 (385)
T PRK05958 254 LID 256 (385)
T ss_pred HHH
Confidence 543
No 185
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.83 E-value=9.8e-20 Score=165.92 Aligned_cols=205 Identities=15% Similarity=0.107 Sum_probs=137.9
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
|++++||.++ +.++.+|+|.+++.+++... ..+ ..+...++++.++++.+.+.++|++||++|++.+++.+
T Consensus 30 g~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~ 108 (400)
T PTZ00125 30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAF-YNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFA 108 (400)
T ss_pred CCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccc-cCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHH
Confidence 5667777654 33558999999999876421 112 24678899999999998888999999999999999987
Q ss_pred ccc---------CCCeEE-ecCCcceeeecccccccc-cccc--cccceeeeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413 137 CDR---------RDSEII-VGDCSHIMLWEQGGASQT-SVYS--QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 137 ~~~---------~g~~vi-~~~~~h~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
... .++.|+ +...+|+.+......... ..+. ......+..++ ..|++++++.++..
T Consensus 109 ~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~~~------ 177 (400)
T PTZ00125 109 RKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD-----YNDVEALEKLLQDP------ 177 (400)
T ss_pred HHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC-----CCCHHHHHHHhCCC------
Confidence 521 123444 466778876543333211 0100 00000111222 24899999999621
Q ss_pred ceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhc--c--cCCeEEEecccccCc--c
Q psy5413 204 STSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVC--A--SVDTVMFCLSKGLGA--P 271 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~--~--~~dv~~~s~sK~l~~--p 271 (285)
++++|++++++|++ |.+. +.+++++|+++|++||+++|+||+|+++. ... . ..|++ +++|++++ .
T Consensus 178 ~~~~v~~ep~~~~~-G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~--~~sK~l~~g~~ 254 (400)
T PTZ00125 178 NVAAFIVEPIQGEA-GVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIV--LLGKALSGGLY 254 (400)
T ss_pred CeEEEEEcCccCCC-CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEE--EEcccccCCCc
Confidence 79999999999999 6655 57889999999999999999999987432 111 1 23544 56799986 2
Q ss_pred eeEEeecCccccc
Q psy5413 272 VGSILAGPEEFIQ 284 (285)
Q Consensus 272 ~gg~~~~~~~~i~ 284 (285)
..|+++.++++++
T Consensus 255 ~ig~v~~~~~~~~ 267 (400)
T PTZ00125 255 PISAVLANDDVML 267 (400)
T ss_pred CcEEEEEcHHHHh
Confidence 3456666666654
No 186
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.83 E-value=1.7e-19 Score=164.73 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=126.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|++....|..+....... . ...|.++..++
T Consensus 56 ~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al~-~~Gd~Vl~~~~~Y~~t~~~~~~~----l-~~~gi~v~~~d 129 (425)
T PRK06084 56 MNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTIA-EAGDNIVSVAKLYGGTYNLLAHT----L-PRIGIETRFAA 129 (425)
T ss_pred CCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHHh-CCCCEEEEeCCCcchHHHHHHHh----c-ccceeEEEEEC
Confidence 567899999999999999889999999999999999877 58999998766554332211100 0 12355555444
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~ 255 (285)
. .|++++++++++ ++++|++++|+||+ |.++| +++|+++|+++|+++|+|++++.. ..+..
T Consensus 130 ~-----~d~e~le~ai~~-------~tklV~lesp~NPt-G~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~~~p~~~ 193 (425)
T PRK06084 130 H-----DDIAALEALIDE-------RTKAVFCESIGNPA-GNIID---IQALADAAHRHGVPLIVDNTVATPVLCRPFEH 193 (425)
T ss_pred C-----CCHHHHHHHhcc-------CCcEEEEeCCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCcccccCChhhc
Confidence 3 389999999987 78999999999999 99999 999999999999999999998822 22335
Q ss_pred cCCeEEEecccccCc---ceeEEeecCc
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~~~ 280 (285)
++|+++.|++|++++ .+||+++.++
T Consensus 194 gaDivv~S~tK~l~G~g~~~gG~v~~~~ 221 (425)
T PRK06084 194 GADIVVHSLTKYIGGHGTSIGGIVVDSG 221 (425)
T ss_pred CCCEEEECchhcccccccceeEEEEeCC
Confidence 799999999999987 6788887643
No 187
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=5.1e-20 Score=165.28 Aligned_cols=197 Identities=17% Similarity=0.172 Sum_probs=148.8
Q ss_pred CeeeeeccC-CcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHcccc
Q psy5413 66 IRTVDIRSD-TISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~ 139 (285)
..+++|..+ ++..+++++++++.+.... ...|.. +...+|++.++++++.+ .+++++|+++++..++.+++ .
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~~-~ 103 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-PRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALACA-K 103 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHhc-C
Confidence 467888654 4445788999999876643 345654 56789999999999864 35677777788888888776 6
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG 219 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG 219 (285)
+||+|+++.++|..... .. ...|.+++.++.++++.+|++++++++.+. ++++|++++|+||| |
T Consensus 104 ~gd~vlv~~P~y~~~~~---~~------~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~------~~~~v~l~~p~NPt-G 167 (356)
T PRK04870 104 PGATVLAPEPGFVMYRM---SA------KLAGLEFVGVPLTADFTLDLPAMLAAIAEH------RPALVFLAYPNNPT-G 167 (356)
T ss_pred CCCEEEECCCCHHHHHH---HH------HHcCCEEEEecCCCCCCCCHHHHHHHhhcC------CCCEEEEcCCCCCC-C
Confidence 89999999888754332 22 345899999998767789999999999642 78999999999999 9
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++.+++++|+++| ++++|+||+|..+. .+..... +++.|+|| ++. .+.|++++++++++
T Consensus 168 ~~~~~~~~~~i~~~~---~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~ 237 (356)
T PRK04870 168 NLFDDADVERIIEAA---PGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIA 237 (356)
T ss_pred CCCCHHHHHHHHHHC---CCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHH
Confidence 999988899888887 78999999986221 1112223 44999999 544 56788888877664
No 188
>PRK08175 aminotransferase; Validated
Probab=99.83 E-value=9.2e-20 Score=165.86 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=149.6
Q ss_pred CCeeeeeccCCcCCCc-HHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHc----CC----C-cEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKPT-MEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLA----GK----E-AAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~~-~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~----g~----~-~~~~~~~Gs~a~~~a 132 (285)
++.+++|..+++.... +.+.+++.+.... ...|....+..+|++.+++++ |. + .+++++|+++++..+
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~ 107 (395)
T PRK08175 28 GEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHL 107 (395)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHH
Confidence 4678899988877643 4577776654432 345665566788999998875 22 3 467888888999888
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+..++ ++|++|+++.++|....... ...|.+++.++.++++ .+.++++++++. +..++++|++++
T Consensus 108 ~~~~~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~-~~~~~l~~~l~~----~~~~~~~v~i~~ 172 (395)
T PRK08175 108 MLATL-DHGDTVLVPNPSYPIHIYGA---------VIAGAQVRSVPLVEGV-DFFNELERAIRE----SYPKPKMMILGF 172 (395)
T ss_pred HHHhC-CCCCEEEEcCCCCcchHHHH---------HHcCCeEEEEecccCC-CcHHHHHHHHhh----ccCCceEEEEeC
Confidence 88877 69999999988765432211 2347888888875433 358888888864 223789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hh---cccCC--eEEEecccccCc--ceeEEeec
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EV---CASVD--TVMFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~---~~~~d--v~~~s~sK~l~~--p~gg~~~~ 278 (285)
|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+ ....| +++.|+||.++. .+.|+++.
T Consensus 173 p~NPt-G~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 173 PSNPT-AQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCCCC-CCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeC
Confidence 99999 999999999999999999999999999986211 11 11123 448999999865 56788888
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 252 ~~~l~~ 257 (395)
T PRK08175 252 NPELVS 257 (395)
T ss_pred CHHHHH
Confidence 887765
No 189
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.83 E-value=8e-20 Score=164.89 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=129.8
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|.++..+
T Consensus 51 ~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~all-~~Gd~Il~~~~~y~~~~~~~~~~~------~~~gi~v~~v 123 (388)
T PRK08861 51 GNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSALL-GPDDLIVAPHDCYGGTYRLFNTRA------NKGDFKVQFV 123 (388)
T ss_pred CCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCchHHHHHHHHHHH------hcCCeEEEEE
Confidence 578899999999999999999999999999999999876 69999999877765432211 111 2335666666
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.++| +++|+++|+++|+++|+|++|... ..+.
T Consensus 124 d~-----~d~e~l~~~i~~-------~tklV~lesP~NPt-G~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~~pl~ 187 (388)
T PRK08861 124 DQ-----SDAAALDAALAK-------KPKLILLETPSNPL-VRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQKPLE 187 (388)
T ss_pred CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCccccccCCCcc
Confidence 43 489999999977 89999999999999 99999 899999999999999999998822 2334
Q ss_pred ccCCeEEEecccccCcc---eeEEeecC-ccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~ 282 (285)
.++|+++.|++|+++|+ +||+++++ +++
T Consensus 188 ~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~ 219 (388)
T PRK08861 188 LGADFVIHSTTKYINGHSDVIGGVLITKTKEH 219 (388)
T ss_pred cCCCEEEeecceeccCCCcceeEEEEecHHHH
Confidence 57999999999999984 57877664 444
No 190
>PRK02948 cysteine desulfurase; Provisional
Probab=99.83 E-value=1.4e-19 Score=163.87 Aligned_cols=196 Identities=15% Similarity=0.180 Sum_probs=146.1
Q ss_pred eeeccCCcCCCcHHHHHHHHhcccC---CC--Ccc----CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHcc
Q psy5413 69 VDIRSDTISKPTMEMKNYMFNCEVG---DD--VYL----EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 69 ~~~~~~~~~~~~~~v~~a~~~~~~~---~~--~y~----~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~ 137 (285)
+.|.+...+..++.+++++.+.... .. .+. ......++++.+++++|.+ .+++++|+++++..++.+++
T Consensus 2 ~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~ 81 (381)
T PRK02948 2 IYLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLL 81 (381)
T ss_pred EeccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHH
Confidence 4566666667788999998765531 11 111 1234778999999999854 35788888999999888775
Q ss_pred c---cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 138 D---RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 138 ~---~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
. ++|+.|++++..|.+........ +..|.++..++.++++.+|++++++++++ ++++|++++++
T Consensus 82 ~~~~~~g~~vv~~~~~h~s~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~l~~-------~~~lv~~~~~~ 148 (381)
T PRK02948 82 NALPQNKKHIITTPMEHASIHSYFQSL------ESQGYTVTEIPVDKSGLIRLVDLERAITP-------DTVLASIQHAN 148 (381)
T ss_pred HhccCCCCEEEECCcccHHHHHHHHHH------HhCCCEEEEEeeCCCCCCCHHHHHHhcCC-------CCEEEEEECCc
Confidence 2 35788888887776554322222 34588888888777788999999999976 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
|++ |.+.| +++|.++|+++|+++|+|+++. + ......+.|+++.|+||++|.+-.|+++.+++
T Consensus 149 n~t-G~~~~---~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~ 215 (381)
T PRK02948 149 SEI-GTIQP---IAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQ 215 (381)
T ss_pred CCc-Eeehh---HHHHHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCC
Confidence 999 99999 8999999999999999999877 2 22223478999999999877543455555544
No 191
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.83 E-value=1e-19 Score=163.71 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=134.9
Q ss_pred CCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccc
Q psy5413 95 DVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGR 171 (285)
Q Consensus 95 ~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g 171 (285)
..|+ .+|....||+.++++.|.+.+++++||+.|+..++.+++ ++||+|++++..|..+..... .. ..+|
T Consensus 54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll-~~GD~Vv~~~~~Yg~t~~l~~~~l------~~~G 126 (395)
T PRK08114 54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFV-EQGDHVLMTGTAYEPTQDFCSKIL------SKLG 126 (395)
T ss_pred ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHc-CCCCEEEEeCCCcHHHHHHHHHHH------HhcC
Confidence 3454 689999999999999999999999999999999998876 699999987666654433221 11 3458
Q ss_pred eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC--CeEEEeCccCC
Q psy5413 172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN--IPVHMDGARLP 249 (285)
Q Consensus 172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g--i~li~Dea~~~ 249 (285)
+++..++. .|.++++++|++ +|++|++|+|+|++ |.+.| |++|+++||++| +++++|.+++.
T Consensus 127 i~v~~vd~-----~d~~~l~~~l~~-------~TrlV~~EtpsNp~-~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~ 190 (395)
T PRK08114 127 VTTTWFDP-----LIGADIAKLIQP-------NTKVVFLESPGSIT-MEVHD---VPAIVAAVRSVNPDAVIMIDNTWAA 190 (395)
T ss_pred cEEEEECC-----CCHHHHHHhcCC-------CceEEEEECCCCCC-CEeec---HHHHHHHHHHhCCCCEEEEECCCcc
Confidence 78777664 378999999987 89999999999999 99999 999999999984 99999999882
Q ss_pred ---hhhhcccCCeEEEecccccCcc---eeEEeecCccc
Q psy5413 250 ---LAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEF 282 (285)
Q Consensus 250 ---~~~~~~~~dv~~~s~sK~l~~p---~gg~~~~~~~~ 282 (285)
...+..++|+++.|.+|+++|+ ++|+++.++++
T Consensus 191 p~~~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~ 229 (395)
T PRK08114 191 GVLFKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARC 229 (395)
T ss_pred ccccCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHH
Confidence 2334468999999999999994 78888877654
No 192
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=99.83 E-value=9.6e-20 Score=167.39 Aligned_cols=217 Identities=16% Similarity=0.111 Sum_probs=136.1
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCCC----ccCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDDV----YLEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~~----y~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al 133 (285)
|++++||.++ +.++.+|++.+|+.+++..... ...++...+|.++|++... .+.++|++|||+|++.|+
T Consensus 53 G~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~Al 132 (441)
T PRK05769 53 GNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAI 132 (441)
T ss_pred CCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHH
Confidence 4555555444 4477999999999988763211 1135668899999999874 467899999999999999
Q ss_pred HHccccCCCe-EEe-cCCcceeeecccccccc-cccccccc---eeeeeeecCCCC----C-C--------CHHHHHHHh
Q psy5413 134 MTHCDRRDSE-IIV-GDCSHIMLWEQGGASQT-SVYSQIGR---VLMRGVTNQKDG----T-F--------DLDEMEAKF 194 (285)
Q Consensus 134 ~~~~~~~g~~-vi~-~~~~h~~~~~~~~~~~~-~~~~~~~g---~~~~~~~~~~~~----~-~--------d~~~l~~~i 194 (285)
+++....|+. |+. ...||+.+.....+... ..+...++ ..+..++.+... . . +++.+++.+
T Consensus 133 klAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 212 (441)
T PRK05769 133 KIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYL 212 (441)
T ss_pred HHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHH
Confidence 9988666654 333 57889887543322110 11111111 112222221100 0 1 133455523
Q ss_pred cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccc
Q psy5413 195 STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKG 267 (285)
Q Consensus 195 ~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~ 267 (285)
.+ ...+.+++++|++|++++..|....|.+++++|.++|++||+++|+||+++++. ...+..++. +.+++|.
T Consensus 213 ~~-~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~ 291 (441)
T PRK05769 213 FK-KLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKA 291 (441)
T ss_pred Hh-hccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEccc
Confidence 21 001234799999999999885556778999999999999999999999988432 122222222 3467899
Q ss_pred cCc--ceeEEeecCcccc
Q psy5413 268 LGA--PVGSILAGPEEFI 283 (285)
Q Consensus 268 l~~--p~gg~~~~~~~~i 283 (285)
+++ |.|+ ++++++++
T Consensus 292 l~~G~p~ga-v~~~~~i~ 308 (441)
T PRK05769 292 IAGGLPLGA-VIGRAELM 308 (441)
T ss_pred ccCCcccEE-EEEehhhh
Confidence 987 6665 44555543
No 193
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.83 E-value=6.3e-20 Score=164.92 Aligned_cols=207 Identities=22% Similarity=0.205 Sum_probs=145.9
Q ss_pred eeeeeccCCcCCC--c---HHHHHHHHh-cc--cCCCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHH
Q psy5413 67 RTVDIRSDTISKP--T---MEMKNYMFN-CE--VGDDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNL 130 (285)
Q Consensus 67 ~~~~~~~~~~~~~--~---~~v~~a~~~-~~--~~~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~ 130 (285)
++|+|+++++... + +++.+++.+ .. .....|+...+..+|++.++++++ .+..+++.+|+.+..
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 4688888877774 3 345555443 11 124678877789999999999998 342456666665555
Q ss_pred HHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEE
Q psy5413 131 IAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSL 207 (285)
Q Consensus 131 ~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 207 (285)
.++..++ ..+|+.|++++++|........ ..|.+++.++. ..++.+|+++|++.+++... ...++++
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~-~~~~~~~ 151 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAAR---------LLGAEVIPVPLDSENDFHLDPEALEEALDELPS-KGPRPKA 151 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHH---------HTTSEEEEEEEEETTTTEETHHHHHHHHHTSHT-TTETEEE
T ss_pred hhhhhcccccccccceecCCcccccccccc---------ccCceeeeccccccccccccccccccccccccc-cccccce
Confidence 5554444 3588999999888866554332 34778888874 35677999999999987321 1114689
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----------hhhcccCC-eEEEecccccCc--cee
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----------AEVCASVD-TVMFCLSKGLGA--PVG 273 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----------~~~~~~~d-v~~~s~sK~l~~--p~g 273 (285)
|++++|+||| |..++.+++++|+++|++||+++|+||+|..+ ..+..+.+ +++.|+||.++. .+.
T Consensus 152 v~~~~p~nPt-G~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRv 230 (363)
T PF00155_consen 152 VLICNPNNPT-GSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRV 230 (363)
T ss_dssp EEEESSBTTT-TBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTE
T ss_pred eeeccccccc-ccccccccccchhhhhcccccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccccc
Confidence 9999999999 99999999999999999999999999998811 12223445 459999999876 445
Q ss_pred EEeecCccccc
Q psy5413 274 SILAGPEEFIQ 284 (285)
Q Consensus 274 g~~~~~~~~i~ 284 (285)
|+++.++++++
T Consensus 231 G~i~~~~~~~~ 241 (363)
T PF00155_consen 231 GYIVAPPELIE 241 (363)
T ss_dssp EEEEEEHHHHH
T ss_pred ccccchhhhhh
Confidence 77777776654
No 194
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=7.5e-20 Score=164.28 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=146.5
Q ss_pred CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
+..+++|..+ ++..++|.+.+++.+.......|. .+...+|++.++++++.+ .+++++|+++++..++++++ ++|
T Consensus 29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~~-~~g 106 (357)
T PRK14809 29 PDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAML-DPG 106 (357)
T ss_pred ccceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHhc-CCC
Confidence 4568999865 555678889999877654434564 456889999999998754 35888888999999999877 699
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG 219 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG 219 (285)
|.|+++++++...... . ...|..++.++.. .++.++++++++.+ + ++++|++++|+||| |
T Consensus 107 d~V~v~~P~y~~~~~~---~------~~~g~~~~~~~l~~~~~~~~~~~~~~~~~-~-------~~k~i~l~~p~NPT-G 168 (357)
T PRK14809 107 DTVLVPDPGFAYYGMS---A------RYHHGEVREYPVSKADDFEQTADTVLDAY-D-------GERIVYLTSPHNPT-G 168 (357)
T ss_pred CEEEEeCCChHHHHHH---H------HHcCCeEEEEecccCcCCCcCHHHHHHhh-c-------CCcEEEEeCCCCCC-C
Confidence 9999998876433221 1 2336666666653 23456777777665 3 46899999999999 9
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEeCccCCh------hhhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 220 TVLPMQWLRELKARCQEHNIPVHMDGARLPL------AEVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++.+++++|+++|++ ++++|+||+|..+ ....... .++ +.||||.++. .+.|++++++++++
T Consensus 169 ~~~s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~ 242 (357)
T PRK14809 169 SEIPLDEVEALAERTDE-ETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWAD 242 (357)
T ss_pred cCCCHHHHHHHHHhCcc-CcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHH
Confidence 99999999999998875 7899999998722 1112222 344 8999999873 67789988887764
No 195
>PRK05939 hypothetical protein; Provisional
Probab=99.83 E-value=1.5e-19 Score=163.83 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=128.2
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...+||+.++++.|.+.++.+++|+.|+..++.+++ ++||+|++++..|..+....... ...|.+++.++
T Consensus 45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all-~~Gd~Vv~~~~~y~~t~~~~~~l------~~~G~~v~~v~ 117 (397)
T PRK05939 45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLL-RAGDHLVSSQFLFGNTNSLFGTL------RGLGVEVTMVD 117 (397)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHc-CCCCEEEECCCccccHHHHHHHH------HhcCCEEEEEC
Confidence 568899999999999999999999999999999998876 69999999877664432211111 24577877776
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~ 255 (285)
. .|++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++|+|++++.. .....
T Consensus 118 ~-----~d~e~l~~~l~~-------~tklV~vesp~Npt-G~v~d---l~~I~~la~~~gi~livD~t~a~~~~~~~~~~ 181 (397)
T PRK05939 118 A-----TDVQNVAAAIRP-------NTRMVFVETIANPG-TQVAD---LAGIGALCRERGLLYVVDNTMTSPWLFRPKDV 181 (397)
T ss_pred C-----CCHHHHHHhCCC-------CCeEEEEECCCCCC-CCHHh---HHHHHHHHHHcCCEEEEECCcccccccCcccc
Confidence 5 289999999987 89999999999999 88888 999999999999999999998732 22334
Q ss_pred cCCeEEEecccccCc---ceeEEeecC
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~~ 279 (285)
++|+++.|++|++++ .+||+++.+
T Consensus 182 gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 182 GASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred CCEEEEecCeecccCCCCeEEEEEecC
Confidence 789999999999997 567766643
No 196
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.83 E-value=8e-20 Score=164.63 Aligned_cols=199 Identities=21% Similarity=0.145 Sum_probs=146.8
Q ss_pred CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
+.++++|.++ ++.+++|.+.+++.+.......|.. +...++++.++++++.+ .+++++++++++..++.+++ ++|
T Consensus 31 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l~-~~g 108 (367)
T PRK02731 31 IADIIKLASNENPLGPSPKAIEAIRAAADELHRYPD-GSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYL-GPG 108 (367)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCC
Confidence 4567999876 4556788899998876544445653 33578999999999865 35777777888888878776 589
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~ 221 (285)
+.|+++++.|..... .. ...|.+++.++. .++.+|++++++++++ ++++|++++|+||| |.+
T Consensus 109 d~vl~~~p~y~~~~~---~~------~~~g~~~~~~~~-~~~~~~~~~l~~~~~~-------~~~~v~l~~p~npt-G~~ 170 (367)
T PRK02731 109 DEVIYSEHGFAVYPI---AA------QAVGAKPVEVPA-KDYGHDLDAMLAAVTP-------RTRLVFIANPNNPT-GTY 170 (367)
T ss_pred CEEEEecCCHHHHHH---HH------HHcCCeEEEecc-cCCCCCHHHHHHHhCC-------CCcEEEEeCCCCCC-CcC
Confidence 999998877643221 11 345888888887 4567899999999976 78999999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhc-ccCCe-EEEecccccC--cceeEEeecCccccc
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVC-ASVDT-VMFCLSKGLG--APVGSILAGPEEFIQ 284 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~-~~~dv-~~~s~sK~l~--~p~gg~~~~~~~~i~ 284 (285)
++.+++.++++.|+ +|+++|+||+|.... ... ..-++ ++.|+||.++ |.+.|++++++++++
T Consensus 171 ~~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~ 245 (367)
T PRK02731 171 LPAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIID 245 (367)
T ss_pred CCHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHH
Confidence 99777777777664 599999999976111 111 12233 4889999875 366788888887664
No 197
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.83 E-value=2.2e-19 Score=164.90 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=150.2
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccCC--C----C-cc---CChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVGD--D----V-YL---EDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIA 132 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~----~-y~---~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~a 132 (285)
.+++.|.+...+..++.+.+++.+..... . . +. ......++++.+++++|.+ .++|++|+++++..+
T Consensus 31 ~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i 110 (424)
T PLN02855 31 SKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLV 110 (424)
T ss_pred CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHH
Confidence 45678888777777788999987654321 1 1 11 1123578999999999873 468999999999988
Q ss_pred HHHc---cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEE
Q psy5413 133 IMTH---CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 133 l~~~---~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
+..+ ..++|++|++.+..|.+... ...++ ...|.+++.++.++++.+|++++++.|++ ++++|
T Consensus 111 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a------~~~g~~v~~v~~~~~~~~~~~~l~~~i~~-------~t~lv 177 (424)
T PLN02855 111 AYTWGLANLKPGDEVILSVAEHHSNIVPWQLVA------QKTGAVLKFVGLTPDEVLDVEQLKELLSE-------KTKLV 177 (424)
T ss_pred HHHhhhhcCCCcCEEEECCCccHHHHHHHHHHH------HHcCCEEEEEecCCCCCcCHHHHHHHhcc-------CceEE
Confidence 8753 22578999998877754321 11122 34588888888766677899999999987 89999
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh--hh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--EV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
++++++|++ |.++| +++|+++|+++|+++|+|++|. +.. .+ ..++|+++.|+||.+|.+..|++..++++++
T Consensus 178 ~i~~~~n~t-G~~~~---~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~ 253 (424)
T PLN02855 178 ATHHVSNVL-GSILP---VEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLE 253 (424)
T ss_pred EEeCccccc-cccCC---HHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhh
Confidence 999999999 99999 8999999999999999999987 221 12 2467999999999654333477877777654
No 198
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.83 E-value=2.1e-19 Score=164.41 Aligned_cols=158 Identities=24% Similarity=0.203 Sum_probs=129.3
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...++|+.++++.|.+.+++++||++|+.+++.+++ ++||+||+++..|..+...... .....|.+++.++
T Consensus 62 ~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll-~~Gd~Vi~~~~~y~~t~~~~~~-----~l~~~Gi~v~~vd 135 (433)
T PRK08134 62 SNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATLM-GAGSHIVASSALYGGSHNLLHY-----TLRRFGIETTFVK 135 (433)
T ss_pred cChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEeCCccHHHHHHHHH-----HHhhCCeEEEEEC
Confidence 568899999999999999999999999999999998876 6899999987766543221100 0023588888877
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~ 255 (285)
.. |+++++++|++ +|++|++++++|++ |.+.| +++|+++|++||+++|+|++++. ...+..
T Consensus 136 ~~-----d~~~l~~~i~~-------~TklV~~e~~~np~-g~v~D---i~~I~~la~~~gi~livD~t~a~~~~~~pl~~ 199 (433)
T PRK08134 136 PG-----DIDGWRAAIRP-------NTRLLFGETLGNPG-LEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEH 199 (433)
T ss_pred CC-----CHHHHHHhcCC-------CCeEEEEECCCccc-CcccC---HHHHHHHHHHcCCEEEEECCCcccccCCchhc
Confidence 53 89999999988 89999999999999 99999 99999999999999999999872 223345
Q ss_pred cCCeEEEecccccCc---ceeEEeec
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~ 278 (285)
++|+++.|.+|++++ -+||+++.
T Consensus 200 GaD~vv~S~tK~l~g~g~~~gG~v~~ 225 (433)
T PRK08134 200 GADLVYHSATKFLGGHGTAIGGVLVD 225 (433)
T ss_pred CCCEEEeccccccCCCCCceEEEEEe
Confidence 899999999999998 35677664
No 199
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.83 E-value=2e-19 Score=164.18 Aligned_cols=201 Identities=20% Similarity=0.192 Sum_probs=149.8
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcccCC-----C-Ccc----CChhHHHHHHHHHhHcCC-C--cEEEcCChHHHHHHHH
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEVGD-----D-VYL----EDPTCKELQEKAAKLAGK-E--AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~-----~-~y~----~~~~~~~l~~~la~~~g~-~--~~~~~~~Gs~a~~~al 133 (285)
.++.|.+...+..++.+.+++.+..... . .+. ......++++.+++++|. + .++|++|+++++..++
T Consensus 23 ~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~ 102 (406)
T PRK09295 23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVA 102 (406)
T ss_pred ceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHH
Confidence 4577777776777889999987655321 1 111 123477899999999986 2 4689999999999888
Q ss_pred HHc---cccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 134 MTH---CDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 134 ~~~---~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
..+ ..++|++|++.+..|.+... ....+ ...|.+++.++.++++.+|+++|++++++ ++++|+
T Consensus 103 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~v~~~~~~~~d~~~l~~~i~~-------~t~lv~ 169 (406)
T PRK09295 103 NSWGNSNVRAGDNIIISEMEHHANIVPWQMLC------ARVGAELRVIPLNPDGTLQLETLPALFDE-------RTRLLA 169 (406)
T ss_pred HHhhhhcCCCcCEEEECcchhhHHHHHHHHHH------HHcCcEEEEEecCCCCCCCHHHHHHhcCC-------CcEEEE
Confidence 764 23578999998877754321 11122 34588888888777778899999999977 789999
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++++|++ |.++| +++|.++|+++|+++++|++|+ + +.....++|+++.|+||.+|.+..|++..++++++
T Consensus 170 l~~~~n~t-G~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~ 244 (406)
T PRK09295 170 ITHVSNVL-GTENP---LAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQ 244 (406)
T ss_pred Eecchhcc-cccCC---HHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHh
Confidence 99999999 99999 9999999999999999999987 2 21123578999999999665433467777776543
No 200
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=8.7e-20 Score=165.12 Aligned_cols=196 Identities=17% Similarity=0.116 Sum_probs=145.9
Q ss_pred CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
+..+++|..+ ++..++|.+.+++.+.. ....|. ++...+|++.++++++.+ .+++++|+++++..++.+++ ++|
T Consensus 51 ~~~~i~l~~n~~p~~~~~~v~~a~~~~~-~~~~Yp-~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~~-~~g 127 (380)
T PLN03026 51 PEDIVKLDANENPYGPPPEVLEALGNMK-FPYVYP-DPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVL-DPG 127 (380)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHhhH-hhccCC-CCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHhc-CCC
Confidence 3577999876 56668889999886531 123354 455789999999999865 36788888999999988876 689
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHh-cccccccCCceEEEEEecccCCCCee
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGT 220 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i-~~~~~~~~~~~~~v~i~~~~n~~gG~ 220 (285)
++|+++++++..... .. ...|.+++.++.++++.+|++++++++ .+ ++++|++++|+||| |.
T Consensus 128 d~Vlv~~P~y~~y~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~-------~~~~v~l~~P~NPT-G~ 190 (380)
T PLN03026 128 DKIIDCPPTFGMYVF---DA------AVNGAEVIKVPRTPDFSLDVPRIVEAVETH-------KPKLLFLTSPNNPD-GS 190 (380)
T ss_pred CEEEEcCCChHHHHH---HH------HHcCCEEEEeecCCCCCcCHHHHHHHHhcc-------CCcEEEEeCCCCCC-CC
Confidence 999998887643322 12 345888888887666778999999998 44 78999999999999 89
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC--eEEEecccccCc--ceeEEeecCccccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD--TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++.+++++|++. . +++|+||+|..+. ......+ +++.||||.+|. .+.|++++++++++
T Consensus 191 ~~~~~~l~~l~~~---~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~ 260 (380)
T PLN03026 191 IISDDDLLKILEL---P-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIE 260 (380)
T ss_pred CCCHHHHHHHHhc---C-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHH
Confidence 9996666666553 3 8999999986221 1112222 458999998864 77889999887764
No 201
>PRK06917 hypothetical protein; Provisional
Probab=99.83 E-value=1.9e-19 Score=165.60 Aligned_cols=233 Identities=16% Similarity=0.128 Sum_probs=150.9
Q ss_pred cccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC-CC---ccCChhHH
Q psy5413 29 LVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD-DV---YLEDPTCK 104 (285)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~-~~---y~~~~~~~ 104 (285)
.+.++.+.+.|+..++.+++.+..|+.- +.++.||+|.+++.+++... .. ...++...
T Consensus 16 ~i~~a~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~ 77 (447)
T PRK06917 16 VISHGKGVYLYDQNGNKYFDGSSGAVTA------------------GIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAE 77 (447)
T ss_pred eEEeeeeeEEEeCCCCEEEECchhHHhc------------------cCCCCCHHHHHHHHHHHhhCcCccccccCCHHHH
Confidence 4777888888887666655555444432 34789999999999887641 11 12356688
Q ss_pred HHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHcccc------CCCe-EEe-cCCcceeeeccccccccccccccc----
Q psy5413 105 ELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTHCDR------RDSE-IIV-GDCSHIMLWEQGGASQTSVYSQIG---- 170 (285)
Q Consensus 105 ~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~~~~------~g~~-vi~-~~~~h~~~~~~~~~~~~~~~~~~~---- 170 (285)
+|.++|++.+. .+.++|++|||+|++.|++++... +++. |+. ...||+.+.....+.....+...+
T Consensus 78 ~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~ 157 (447)
T PRK06917 78 KLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLL 157 (447)
T ss_pred HHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCC
Confidence 99999999874 356799999999999999998532 3443 443 578898775433322111111111
Q ss_pred -ceeeeeeecCCC----C------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCee-eCCHHHHHHHHHHHHHcC
Q psy5413 171 -RVLMRGVTNQKD----G------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT-VLPMQWLRELKARCQEHN 238 (285)
Q Consensus 171 -g~~~~~~~~~~~----~------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~-~~~~~~l~~i~~la~~~g 238 (285)
+...+..|.... . ..+++.+++.++.. ..+++++|++|+.++..||. +.|.+++++|.++|++||
T Consensus 158 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~---~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g 234 (447)
T PRK06917 158 EDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERI---GAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYD 234 (447)
T ss_pred CCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhc---CCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcC
Confidence 111112221100 0 01346777777642 12379999999988754344 567899999999999999
Q ss_pred CeEEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCcccc
Q psy5413 239 IPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPEEFI 283 (285)
Q Consensus 239 i~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~~~i 283 (285)
+++|+||+++++ ....++.++. +.+++|++++ |+++++.. ++++
T Consensus 235 ~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~-~~i~ 288 (447)
T PRK06917 235 ILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVS-DRVM 288 (447)
T ss_pred CEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEc-HHHH
Confidence 999999998843 2233444544 6777899986 77766654 4544
No 202
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.83 E-value=8.9e-20 Score=163.95 Aligned_cols=198 Identities=16% Similarity=0.122 Sum_probs=145.9
Q ss_pred CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEE-cCChHHHHHHHHHHccccC
Q psy5413 65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIF-VPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~-~~~Gs~a~~~al~~~~~~~ 140 (285)
+..+++|..+ ++..+.|.+.+++.+.......|.. +...++++.++++++.+. .++ ++++++++..++++++ ++
T Consensus 33 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~~-~~ 110 (361)
T PRK00950 33 PESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPE-PDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFI-DP 110 (361)
T ss_pred ccceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCC-CCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHhc-CC
Confidence 3478999865 5556788999888766544445553 346899999999998754 466 4455677788888776 58
Q ss_pred CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413 141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220 (285)
Q Consensus 141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~ 220 (285)
|+.|+++++.+..... .. +..|.+++.++.++++.+|++++++.+++ ++++|++++|+||| |.
T Consensus 111 gd~vlv~~p~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~v~~~~p~npt-G~ 173 (361)
T PRK00950 111 GDEVIIPTPTFSYYEI---SA------KAHGAKPVYAKREEDFSLDVDSVLNAITE-------KTKVIFLCTPNNPT-GN 173 (361)
T ss_pred CCEEEEcCCChHHHHH---HH------HHcCCEEEEeecCCCCCcCHHHHHHHhcc-------CCCEEEEeCCCCCC-CC
Confidence 9999988876543322 12 34588888888656667999999999876 78899999999999 89
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCC--eEEEecccccCc--ceeEEeecCccccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVD--TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~d--v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
++| ++++.++|+++|+++|+||+|..+. .+....| +++.|+||.+|. .+.|++++++++++
T Consensus 174 ~~~---~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~ 243 (361)
T PRK00950 174 LIP---EEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLID 243 (361)
T ss_pred CcC---HHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHH
Confidence 999 6777778889999999999987321 2222233 347899999875 46688888877653
No 203
>PRK05839 hypothetical protein; Provisional
Probab=99.83 E-value=1.2e-19 Score=163.94 Aligned_cols=200 Identities=14% Similarity=0.054 Sum_probs=142.8
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C----CCcEEEcCChHHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G----KEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g----~~~~~~~~~Gs~a~~~al~~ 135 (285)
|..+++|..+.+.. +++.+.+++.+.......|....+..+|++.+++++ | .+.+++++|+++++..++.+
T Consensus 23 ~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~ 102 (374)
T PRK05839 23 EYKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQF 102 (374)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHH
Confidence 56889999877765 455788887765433456665556678888887664 4 23357777778888888777
Q ss_pred ccc-cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 136 HCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 136 ~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
++. ++|+.|+++.+++....... ...|++++.++.+++ +.+|+++. .+ + ++++|++++
T Consensus 103 ~~~~~~gd~vlv~~P~y~~~~~~~---------~~~g~~v~~v~~~~~~~~~~d~~~~--~~-~-------~~k~v~i~n 163 (374)
T PRK05839 103 VLFDKQNPTIAYPNPFYQIYEGAA---------IASRAKVLLMPLTKENDFTPSLNEK--EL-Q-------EVDLVILNS 163 (374)
T ss_pred HhcCCCCCEEEECCCCchhhHHHH---------HhcCCEEEEeecccccCCcCCcchh--hh-c-------cccEEEEeC
Confidence 642 47888999888775544322 345889999987533 44554432 22 3 589999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhc--------cc-CC-eEEEecccccC--cceeE
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVC--------AS-VD-TVMFCLSKGLG--APVGS 274 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~--------~~-~d-v~~~s~sK~l~--~p~gg 274 (285)
|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. .. -. +++.|+||.++ |.+.|
T Consensus 164 P~NPT-G~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG 242 (374)
T PRK05839 164 PNNPT-GRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSG 242 (374)
T ss_pred CCCCc-CcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeE
Confidence 99999 999999999999999999999999999977221 111 01 12 34899999754 47888
Q ss_pred EeecCccccc
Q psy5413 275 ILAGPEEFIQ 284 (285)
Q Consensus 275 ~~~~~~~~i~ 284 (285)
++++++++++
T Consensus 243 ~ii~~~~~~~ 252 (374)
T PRK05839 243 FIAGDASILK 252 (374)
T ss_pred EEecCHHHHH
Confidence 8888877654
No 204
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.83 E-value=9.9e-20 Score=164.90 Aligned_cols=161 Identities=21% Similarity=0.192 Sum_probs=129.0
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.++...+|++.++++.|.+.++.++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|.++..+
T Consensus 59 ~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~gi~~~~~ 131 (388)
T PRK07811 59 GNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVL-RPGDHIVIPNDAYGGTFRLIDKVF------TRWGVEYTPV 131 (388)
T ss_pred CCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHh-CCCCEEEEcCCCchHHHHHHHHhC------cCCCeEEEEe
Confidence 567899999999999999999888999999999999887 69999999887775432211 111 2346666665
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.+.+ +++|+++|+++|+++|+|+++... ..+.
T Consensus 132 d~-----~d~e~l~~~i~~-------~tklV~ie~p~NPt-g~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~~p~~ 195 (388)
T PRK07811 132 DL-----SDLDAVRAAITP-------RTKLIWVETPTNPL-LSITD---IAALAELAHDAGAKVVVDNTFASPYLQQPLA 195 (388)
T ss_pred CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCc-ceecC---HHHHHHHHHHcCCEEEEECCCCccccCCchh
Confidence 54 389999999987 79999999999999 89988 999999999999999999998722 2233
Q ss_pred ccCCeEEEecccccCcc---eeEEeec-Cccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~ 282 (285)
.++|+++.|++|+++++ +||+++. ++++
T Consensus 196 ~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l 227 (388)
T PRK07811 196 LGADVVVHSTTKYIGGHSDVVGGALVTNDEEL 227 (388)
T ss_pred hCCcEEEecCceeecCCCCcEEEEEEECCHHH
Confidence 57899999999999985 4676654 4554
No 205
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.83 E-value=3.1e-19 Score=163.43 Aligned_cols=157 Identities=23% Similarity=0.247 Sum_probs=128.5
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|+++...|..+.... ... ...|..++.+
T Consensus 61 ~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~all-~pGd~VIv~~~~y~~t~~~~~~~~------~~~G~~v~~v 133 (427)
T PRK05994 61 TNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTLL-QPGDEFIAARKLYGGSINQFGHAF------KSFGWQVRWA 133 (427)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHh-CCCCEEEEecCcchhHHHHHHHHH------HhcCcEEEEE
Confidence 467789999999999999999999999999999999876 69999998876664332110 011 2357777777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~ 254 (285)
+. .|+++++++|++ ++++|++++|+||+ |.+.| +++|+++|++||+++|+|++++. ...+.
T Consensus 134 d~-----~d~~~l~~ai~~-------~tklV~vesp~Npt-G~v~d---l~~I~~la~~~gi~livD~a~a~~~~~~pl~ 197 (427)
T PRK05994 134 DA-----DDPASFERAITP-------RTKAIFIESIANPG-GTVTD---IAAIAEVAHRAGLPLIVDNTLASPYLIRPIE 197 (427)
T ss_pred CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCccccccCCccc
Confidence 64 288999999987 89999999999999 89999 99999999999999999999882 22334
Q ss_pred ccCCeEEEecccccCc---ceeEEeec
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~ 278 (285)
.++|+++.|++|++++ ++||+++.
T Consensus 198 ~gaDivv~S~tK~lgg~~~~~gG~v~~ 224 (427)
T PRK05994 198 HGADIVVHSLTKFLGGHGNSMGGIIVD 224 (427)
T ss_pred cCCcEEEEcCccccCCCCCcEEEEEEe
Confidence 6899999999999997 57888874
No 206
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.83 E-value=1.7e-19 Score=163.00 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=147.0
Q ss_pred eeeeeccCCcCC-CcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcCCC----------cEEEcCChHHHHHHH
Q psy5413 67 RTVDIRSDTISK-PTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAGKE----------AAIFVPSGTMGNLIA 132 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g~~----------~~~~~~~Gs~a~~~a 132 (285)
.+++|..+.+.. +++.+.+++.+.... ...|. .+...+|++.++++++.. .+++++|+++++..+
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~ 107 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSL 107 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHH
Confidence 467888666554 677999998875443 13464 467899999999998732 247778888888877
Q ss_pred HHHccccCCC-eEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 133 IMTHCDRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 133 l~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+.+++ .+|+ .|+++.+++..... .. +..|.+++.++.++ ++.+|++++++++++. ...++++|++
T Consensus 108 ~~~~~-~~g~~~Vlv~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~---~~~~~k~i~l 174 (374)
T PRK02610 108 LIATC-LGGEGSILVAEPTFSMYGI---LA------QTLGIPVVRVGRDPETFEIDLAAAQSAIEQT---QNPPVRVVFV 174 (374)
T ss_pred HHHHc-CCCCCeEEEcCCChHHHHH---HH------HHcCCEEEEecCCcccCCCCHHHHHHHHHhh---cCCCceEEEE
Confidence 77666 3665 78888887654433 22 34588888888644 3679999999998631 0127899999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCcc
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEE 281 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~ 281 (285)
++|+||| |.+++.++++++.++| +++++|+||+|..+. .+...-+ +++.||||.+|. .+.|+++++++
T Consensus 175 ~~P~NPT-G~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~ 251 (374)
T PRK02610 175 VHPNSPT-GNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPE 251 (374)
T ss_pred eCCCCCC-CCCCCHHHHHHHHhcc--CCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHH
Confidence 9999999 9999999999999876 499999999987321 1122223 448999998854 78888888887
Q ss_pred ccc
Q psy5413 282 FIQ 284 (285)
Q Consensus 282 ~i~ 284 (285)
+++
T Consensus 252 l~~ 254 (374)
T PRK02610 252 LIA 254 (374)
T ss_pred HHH
Confidence 764
No 207
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=99.83 E-value=1.3e-19 Score=166.29 Aligned_cols=223 Identities=14% Similarity=0.145 Sum_probs=142.7
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCCCCcc-CChhHHH
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYL-EDPTCKE 105 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~~ 105 (285)
|..+.++.+.+.|+..++.+++.+..|+.. +.++.+|+|.+|+.+++.....+. ..+...+
T Consensus 31 p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~ 92 (431)
T PRK06209 31 PGFIQRGSGAHVWDVDGNEYIEYGMGLRAV------------------GLGHAYPPVVEAVREALQDGCNFTRPSAIELD 92 (431)
T ss_pred CeEEEeccCCEEEeCCCCEEEEccccccch------------------hcCCCCHHHHHHHHHHHHhCcCCCCCCHHHHH
Confidence 455666777777775555544444443332 347799999999998877533343 2333457
Q ss_pred HHHHHHhHcC-CCcEEEcCChHHHHHHHHHHccccCCCeEEe-c--CCcceeeec-ccccccccccccccce--eeeeee
Q psy5413 106 LQEKAAKLAG-KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV-G--DCSHIMLWE-QGGASQTSVYSQIGRV--LMRGVT 178 (285)
Q Consensus 106 l~~~la~~~g-~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~--~~~h~~~~~-~~~~~~~~~~~~~~g~--~~~~~~ 178 (285)
+.++|++++. .+.++|++|||+|++.|++++....|+..++ . ..+|..... .+... ...+. ......
T Consensus 93 la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~tgr~~i~~~~~~~~h~~~~~~~g~~~------~~~~~~~~~~~~~ 166 (431)
T PRK06209 93 AAESFLELIDGADMVKFCKNGSDATSAAVRLARAYTGRDLVARCADHPFFSTDDWFIGTTP------MSAGIPASVSALT 166 (431)
T ss_pred HHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHhCCCeEEEeccCccccccccccccCC------CCCCCChhHhccc
Confidence 8899998873 5678999999999999999988666765443 2 234421100 00000 00000 000000
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----hc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----VC 254 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~~ 254 (285)
. .....|+++++++++. +.+++++|++|+.+ |...|.+++++|+++|++||+++|+||+++++.. ..
T Consensus 167 ~-~~~~~d~~~l~~~l~~----~~~~~aavi~Epv~----g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~ 237 (431)
T PRK06209 167 V-TFRYNDIASLEALFED----HPGRIACVILEPAT----ADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQ 237 (431)
T ss_pred c-ccCCCCHHHHHHHHHh----CCCCEEEEEEcccc----CCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhh
Confidence 1 1112489999999865 23478999999987 4577889999999999999999999999885422 11
Q ss_pred ccCCeE--EEecccccCc--ceeEEeecCcccc
Q psy5413 255 ASVDTV--MFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 255 ~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
+..++. +.+++|.+++ |.++++ ++++++
T Consensus 238 ~~~gv~PDi~t~gK~lggG~p~~av~-~~~~i~ 269 (431)
T PRK06209 238 KLYGIVPDLSCFGKALGNGFAVSALA-GKREYM 269 (431)
T ss_pred HHhCCCcceeeehhhhcCCcccEEEE-EHHHHH
Confidence 222332 5778899987 766544 555554
No 208
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.83 E-value=1.6e-19 Score=158.57 Aligned_cols=192 Identities=21% Similarity=0.287 Sum_probs=150.3
Q ss_pred eeeccCCcCCCcHHHHHHHHhcccCC-------CCcc--CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcc
Q psy5413 69 VDIRSDTISKPTMEMKNYMFNCEVGD-------DVYL--EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 69 ~~~~~~~~~~~~~~v~~a~~~~~~~~-------~~y~--~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~ 137 (285)
+.|.+...+...|+++++|....... ..|+ .....++.|+.+++++|.+. ++|+++||+++..+++.++
T Consensus 3 iYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~ 82 (386)
T COG1104 3 IYLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAA 82 (386)
T ss_pred ccccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhH
Confidence 45555555778999999998766532 1222 23457889999999998764 6999999999999999732
Q ss_pred ---c--cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 138 ---D--RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 138 ---~--~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
. +.|+++|++..-|.++....... +..|..+..+|.+.++.+|+++|+++|++ +|.+|.+..
T Consensus 83 ~a~~~~~~~~HIIts~iEH~aVl~~~~~L------e~~g~~Vtyl~V~~~G~v~~e~L~~al~~-------~T~LVSim~ 149 (386)
T COG1104 83 LAYRNAQKGKHIITSAIEHPAVLNTCRYL------ERQGFEVTYLPVDSNGLVDLEQLEEALRP-------DTILVSIMH 149 (386)
T ss_pred HhhhcccCCCeEEEcccccHHHHHHHHHH------HhcCCeEEEeCCCCCCeEcHHHHHHhcCC-------CceEEEEEe
Confidence 1 14678999988887765533222 34588888999888999999999999998 899999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEee
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILA 277 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~ 277 (285)
.||.+ |.+.| +++|.++|+++|+++|+|.+|+ + +.....++|.+++|.||..|. ..|+..+
T Consensus 150 aNnE~-G~IQp---I~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv 215 (386)
T COG1104 150 ANNET-GTIQP---IAEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYV 215 (386)
T ss_pred cccCe-eeccc---HHHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEE
Confidence 99999 99999 9999999999999999999988 3 222233699999999998665 4555444
No 209
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.83 E-value=4.2e-19 Score=162.31 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=128.0
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...+|++.++++.|.+.+++++||++|+..++.+++ ++|++|+++...|..+...... .....|.+++.++
T Consensus 67 ~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all-~~Gd~Vv~~~~~y~~t~~~~~~-----~l~~~Gi~v~~vd 140 (436)
T PRK07812 67 MNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNLA-GAGDHIVSSPRLYGGTYNLFHY-----TLPKLGIEVSFVE 140 (436)
T ss_pred CCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHh-CCCCEEEEeCCcchHHHHHHHH-----HhhcCeEEEEEEC
Confidence 467799999999999999999999999999999998876 6899998877655443221100 0023577777664
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~~ 255 (285)
. . .|++++++++++ ++++|++++++||+ |.+.| +++|+++|+++|+++|+|++++. ...+..
T Consensus 141 d-~---~d~e~l~~ai~~-------~tklV~ie~~sNp~-G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~~~pl~~ 205 (436)
T PRK07812 141 D-P---DDLDAWRAAVRP-------NTKAFFAETISNPQ-IDVLD---IPGVAEVAHEAGVPLIVDNTIATPYLIRPLEH 205 (436)
T ss_pred C-C---CCHHHHHHhCCC-------CCeEEEEECCCCCC-CeecC---HHHHHHHHHHcCCEEEEECCCcccccCCchhc
Confidence 2 1 289999999987 89999999999999 99999 99999999999999999999872 233446
Q ss_pred cCCeEEEecccccCc---ceeEEeecC
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~~ 279 (285)
++|+++.|++|++++ -+||+++.+
T Consensus 206 GaDivv~S~tK~lgg~G~~i~G~vv~~ 232 (436)
T PRK07812 206 GADIVVHSATKYLGGHGTAIAGVIVDG 232 (436)
T ss_pred CCCEEEEecccccCCCCCeEEEEEEcC
Confidence 899999999999988 467777754
No 210
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.82 E-value=1.7e-19 Score=163.54 Aligned_cols=197 Identities=19% Similarity=0.221 Sum_probs=147.0
Q ss_pred CCeeeeeccCC-cCC-CcHHHHHHHHhcccC----CCCc----cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDT-ISK-PTMEMKNYMFNCEVG----DDVY----LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~-~~~-~~~~v~~a~~~~~~~----~~~y----~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.+++ +++ ++|.+.+++.++... ...| +..+...++++.+++++|.+..+++++|+++++.++.
T Consensus 32 g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~ 111 (385)
T TIGR01825 32 GKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLS 111 (385)
T ss_pred CceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHH
Confidence 67889999765 566 788999998876542 1122 2345688999999999898878888999999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ .+||.|++.+++|........+ .+.++..++ .+|++++++.+.+.. ..++++|++++++
T Consensus 112 ~~~-~~gd~vi~~~~~~~~~~~~~~~---------~g~~~~~~~-----~~d~~~l~~~l~~~~---~~~~~~v~~~~v~ 173 (385)
T TIGR01825 112 ALL-RKGDIVLSDELNHASIIDGLRL---------TKATKKIYK-----HADMDDLDRVLRENP---SYGKKLIVTDGVF 173 (385)
T ss_pred HhC-CCCCEEEEEccccHHHHHHHHh---------cCCceEEeC-----CCCHHHHHHHHHhhc---cCCCeEEEEecCC
Confidence 877 5899999888888655321111 244444432 368888988886521 1268999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C-hh----------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P-LA----------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~-~~----------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
|++ |.+.| +++|.++|++||+++|+||+|. + .. ......++++.|+||++++ .||++++++++
T Consensus 174 ~~t-G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~gG~~~~~~~~ 248 (385)
T TIGR01825 174 SMD-GDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAIGV-VGGYAAGHKEL 248 (385)
T ss_pred cCC-CCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHhhc-CCCEEecCHHH
Confidence 999 88999 9999999999999999999986 2 11 1113456778999999976 56888887776
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 249 ~~ 250 (385)
T TIGR01825 249 IE 250 (385)
T ss_pred HH
Confidence 54
No 211
>KOG1404|consensus
Probab=99.82 E-value=4.4e-20 Score=159.20 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=152.6
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCc----CCCcHHHHHHHHhcccC----CCCcc
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTI----SKPTMEMKNYMFNCEVG----DDVYL 98 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~a~~~~~~~----~~~y~ 98 (285)
|..+.++....+++.. |++++|+.++.+ +++||+|.+++.+|+.. ...|.
T Consensus 33 Pl~Iv~~~~~ylyDe~----------------------G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~~~ 90 (442)
T KOG1404|consen 33 PLVIVRGEGQYLYDEE----------------------GRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSGYL 90 (442)
T ss_pred CceEEecceEEEEcCC----------------------CceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecccc
Confidence 5555566666666654 445555554433 56999999999988853 23555
Q ss_pred CChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCe-EE-ecCCcceeeecccccccccccccc-----
Q psy5413 99 EDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQI----- 169 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~----- 169 (285)
..| ..++.+.|++.+ +.+.++|+||||+||+.|++++..+.|.. +| ..+.||+.+.....+.....+...
T Consensus 91 ~~p-i~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~ 169 (442)
T KOG1404|consen 91 NPP-IHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGLSPWKQNFPGVA 169 (442)
T ss_pred CCc-HHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccCCcccccCCCCC
Confidence 444 777777777775 34557999999999999999998777753 33 358889887665544421222111
Q ss_pred cceeeeeeecCCCC----C-------CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413 170 GRVLMRGVTNQKDG----T-------FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238 (285)
Q Consensus 170 ~g~~~~~~~~~~~~----~-------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g 238 (285)
.+.....-|..+.+ . --.+++++.|... ....+++.+.|+.++.+|-..+|+.+|++..++|+++|
T Consensus 170 ~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~---~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~G 246 (442)
T KOG1404|consen 170 SGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYD---GPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRG 246 (442)
T ss_pred CcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhc---CCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcC
Confidence 12211111211111 0 0124455555432 33469999999999999666788999999999999999
Q ss_pred CeEEEeCccCChhh-----hcccCCeE--EEecccccCc--ceeEEeecC
Q psy5413 239 IPVHMDGARLPLAE-----VCASVDTV--MFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 239 i~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l~~--p~gg~~~~~ 279 (285)
+++|.||+++++.. -.+..|++ +.|++|++|+ |+|+++++.
T Consensus 247 gl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~ 296 (442)
T KOG1404|consen 247 GLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTP 296 (442)
T ss_pred CEEEehhhhhccccccccccccccCCCccHHHHHhhccCCCcceeeecCH
Confidence 99999999884432 23455777 8899999988 999887764
No 212
>PRK08297 L-lysine aminotransferase; Provisional
Probab=99.82 E-value=2.4e-19 Score=164.79 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=154.9
Q ss_pred hcccCCCCCcc--cccccccccccc-CCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHH--HHHhcccC
Q psy5413 19 REVLTLPTPAL--VESTPLSRSWSD-NGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKN--YMFNCEVG 93 (285)
Q Consensus 19 ~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--a~~~~~~~ 93 (285)
+++.+...|.. +.++.+.+.|+. .++.+++.+..|+.. +.++.+|+|.+ ++.+++..
T Consensus 17 ~~~~~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~~~ai~~ql~~ 78 (443)
T PRK08297 17 RHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASS------------------ALGMNHPALADDPEFRAELGR 78 (443)
T ss_pred HHHhhcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhh------------------cCCCCChHHhhHHHHHHHHHH
Confidence 44554444555 578889999984 666666666655543 33789999999 99888742
Q ss_pred ------CCCccCChhHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHcccc-------CC------CeEEe-cCCc
Q psy5413 94 ------DDVYLEDPTCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDR-------RD------SEIIV-GDCS 150 (285)
Q Consensus 94 ------~~~y~~~~~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~-------~g------~~vi~-~~~~ 150 (285)
......++...++.++|+++. +.+.++|++|||+|++.|++++.+. +| .+||. ...|
T Consensus 79 l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~y 158 (443)
T PRK08297 79 AALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAF 158 (443)
T ss_pred hhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCc
Confidence 111223566888899998886 2467899999999999999998532 12 23443 6788
Q ss_pred ceeeecccccccc-cccccccce-ee--eeeecC--C--CCC---------CCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 151 HIMLWEQGGASQT-SVYSQIGRV-LM--RGVTNQ--K--DGT---------FDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 151 h~~~~~~~~~~~~-~~~~~~~g~-~~--~~~~~~--~--~~~---------~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
|+.+..+..+... ..+...+.. .. +..+.. + ... .+++++++.+.+ +.+++++|++|++
T Consensus 159 HG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~iAavI~EPi 234 (443)
T PRK08297 159 HGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER----HPHDIACFIAEPI 234 (443)
T ss_pred CCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh----CCCcEEEEEEccc
Confidence 9887543333211 111111110 00 001110 0 000 134566677764 4458999999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCcceeEEeecCc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGAPVGSILAGPE 280 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~p~gg~~~~~~ 280 (285)
++..|..+.|++++++|+++|++||+++|+||+++++ ....++.++. +.+++|++. .+|++++++
T Consensus 235 ~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~--~~a~l~~~~ 306 (443)
T PRK08297 235 QGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ--VCGIMAGRR 306 (443)
T ss_pred cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc--ccceecchH
Confidence 9998666688999999999999999999999998844 2233344444 556789973 577777654
No 213
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.82 E-value=1.1e-19 Score=158.97 Aligned_cols=168 Identities=20% Similarity=0.268 Sum_probs=129.2
Q ss_pred CCCccCChhHHHHHHHHHhHcCCCcEEE-cCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccce
Q psy5413 94 DDVYLEDPTCKELQEKAAKLAGKEAAIF-VPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 94 ~~~y~~~~~~~~l~~~la~~~g~~~~~~-~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
++.+.+...+.++++.+++++|.+..++ ++++++++.+++.+++ ++||+|+++.+.|.+....... .|.
T Consensus 52 d~l~~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~-~~gd~Vlv~~~~h~s~~~~~~~---------~g~ 121 (294)
T cd00615 52 DDLLDPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVC-GPGDKILIDRNCHKSVINGLVL---------SGA 121 (294)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcC-CCCCEEEEeCCchHHHHHHHHH---------CCC
Confidence 3444556669999999999999988865 7777899999999887 6999999999999776543222 366
Q ss_pred eeeeeecCCC------CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 173 LMRGVTNQKD------GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 173 ~~~~~~~~~~------~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+++.++...+ +.+|+++++++++++ .++++|++++| +++ |.++| +++|+++|+++|+++|+||+
T Consensus 122 ~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-----~~~k~v~l~~p-~~~-G~~~d---l~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 122 VPVYLKPERNPYYGIAGGIPPETFKKALIEH-----PDAKAAVITNP-TYY-GICYN---LRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred EEEEecCccCcccCcCCCCCHHHHHHHHHhC-----CCceEEEEECC-CCC-CEecC---HHHHHHHHHhcCCeEEEECc
Confidence 7666654322 368999999999751 26889999988 466 99999 99999999999999999999
Q ss_pred cCCh---------hhhcccCCeEEEecccccCcc-eeEEeecCcc
Q psy5413 247 RLPL---------AEVCASVDTVMFCLSKGLGAP-VGSILAGPEE 281 (285)
Q Consensus 247 ~~~~---------~~~~~~~dv~~~s~sK~l~~p-~gg~~~~~~~ 281 (285)
|... .....++|+++.|+||+++++ .|+++..+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~div~~S~hK~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 192 HGAHFRFHPILPSSAAMAGADIVVQSTHKTLPALTQGSMIHVKGD 236 (294)
T ss_pred chhhhccCcccCcchhhcCCcEEEEchhcccchHhHHHHHHhCCC
Confidence 8721 112247899999999999885 4566555443
No 214
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=1.1e-19 Score=162.92 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=144.7
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
..+++|..+.+.. +++.+.+++.+.... ...|. ++...+|++.++++++.+ .+++++|+++++..++.+++ ++|
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l~-~~g 101 (353)
T PRK05387 24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFF-NHD 101 (353)
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCC
Confidence 4678998766555 577999998876543 34554 445689999999999764 46899999999999999887 599
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~ 221 (285)
|+|++++++|...... . ...|.+++.++.++++.+|++++++ ++++|++++|+||| |.+
T Consensus 102 d~vlv~~P~y~~~~~~---~------~~~g~~~~~v~~~~~~~~d~~~l~~-----------~~~~v~~~~P~NPt-G~~ 160 (353)
T PRK05387 102 RPLLFPDITYSFYPVY---A------GLYGIPYEEIPLDDDFSIDVEDYLR-----------PNGGIIFPNPNAPT-GIA 160 (353)
T ss_pred CEEEEeCCCHHHHHHH---H------HHcCCEEEEeecCCCCCCCHHHHHh-----------cCCEEEEeCCCCCC-CCC
Confidence 9999998887443321 2 3458888888886677789998762 34688999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccC--CeEEEecccccCc--ceeEEeecCccccc
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASV--DTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~--dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
++.+++++|++.++ |+++|+||+|..+ ..+.... .+++.|+||.++. .+.|++++++++++
T Consensus 161 ~~~~~~~~l~~~~~--~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~ 230 (353)
T PRK05387 161 LPLAEIERILAANP--DSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIE 230 (353)
T ss_pred CCHHHHHHHHHhCC--CcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHH
Confidence 99777777776533 9999999998622 1111212 3559999998763 67788888877654
No 215
>PLN02231 alanine transaminase
Probab=99.82 E-value=2.6e-19 Score=167.72 Aligned_cols=206 Identities=12% Similarity=0.091 Sum_probs=145.5
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhccc---C--CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHH
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEV---G--DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~---~--~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al 133 (285)
.+++|..+....+...+.++. +.+. + ...|+...+..+|++.+++++ |. +.+++++|+++|+..++
T Consensus 130 ~~i~~~~~~~~fp~~~i~~a~-~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~ 208 (534)
T PLN02231 130 SLLDKSETHGLFSADAIERAW-QILDQIPGRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMM 208 (534)
T ss_pred ccCCCCCccccCCHHHHHHHH-HHHHhcCCccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHH
Confidence 445555444444444444443 3322 2 245887788999999999986 21 34688999999999999
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
.+++..+||.|+++.++|....... ...|.+++.++.+++ +.+|+++|++++++.. .++.++++|++.
T Consensus 209 ~~l~~~~gd~Vli~~P~Y~~y~~~~---------~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~-~~~~~~k~ivl~ 278 (534)
T PLN02231 209 QLLIRSEKDGILCPIPQYPLYSASI---------ALHGGTLVPYYLDEATGWGLEISELKKQLEDAR-SKGITVRALVVI 278 (534)
T ss_pred HHhccCCCCEEEEeCCCChhHHHHH---------HHcCCEEEEEecCcccCCCCCHHHHHHHHHHHh-hcCCCeEEEEEe
Confidence 9987447999999888775443322 234778888887543 5789999999986521 122368999999
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcc-------cCCeE-EEeccccc---C
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----------EVCA-------SVDTV-MFCLSKGL---G 269 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~-------~~dv~-~~s~sK~l---~ 269 (285)
+|+||| |.+++.+++++|+++|++||++||+||+|..+. .+.. ...++ +.|+||.+ .
T Consensus 279 nP~NPT-G~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~p 357 (534)
T PLN02231 279 NPGNPT-GQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGEC 357 (534)
T ss_pred CCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCC
Confidence 999999 999999999999999999999999999977211 1110 11244 78999965 3
Q ss_pred cceeEEeec---Cccccc
Q psy5413 270 APVGSILAG---PEEFIQ 284 (285)
Q Consensus 270 ~p~gg~~~~---~~~~i~ 284 (285)
|.++|+++. ++++++
T Consensus 358 GlRiGy~~~~~~~~~l~~ 375 (534)
T PLN02231 358 GKRGGYMEVTGFTSDVRE 375 (534)
T ss_pred ccceEEEEEecCCHHHHH
Confidence 578888764 455543
No 216
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=1.1e-19 Score=163.99 Aligned_cols=198 Identities=17% Similarity=0.104 Sum_probs=147.9
Q ss_pred CeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 66 IRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 66 ~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
..+++|..+ ++..+.+.+.+++.+.......|..... .+|++.++++++.+ .+++++|+++++..++.+++ ++||
T Consensus 36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~~-~~gd 113 (371)
T PRK05166 36 PRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQG-RALREAIAARTGVPADRIILGNGSEDLIAVICRAVL-RPGD 113 (371)
T ss_pred cceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHhc-CCCC
Confidence 367888865 4455788899998764333345664443 58999999999864 46888888999988888876 6899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|++..+.|..... .. ...|.+++.++.++++.+|++++++++++ ++++|++++|+||| |.++
T Consensus 114 ~vli~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~NPt-G~~~ 176 (371)
T PRK05166 114 RVVTLYPSFPLHED---YP------TMMGARVERVTVTPDLGFDLDALCAAVAR-------APRMLMFSNPSNPV-GSWL 176 (371)
T ss_pred EEEEcCCChHHHHH---HH------HHcCCeEEEeecCCCCCCCHHHHHHhhhc-------CCCEEEEeCCCCCC-CCCC
Confidence 99998877654322 22 34588898998866678899999999977 67899999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhc-ccC-Ce-EEEecccccCc--ceeEEee-cCcccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA---------EVC-ASV-DT-VMFCLSKGLGA--PVGSILA-GPEEFI 283 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~-~~~-dv-~~~s~sK~l~~--p~gg~~~-~~~~~i 283 (285)
+.+++++|+++|++ ++++|+||+|..+. ... ... .+ ++.|+||.++. .+.|+++ ++++++
T Consensus 177 ~~~~~~~l~~~~~~-~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~ 251 (371)
T PRK05166 177 TADQLARVLDATPP-ETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELV 251 (371)
T ss_pred CHHHHHHHHHhCCC-CcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHH
Confidence 99999999998874 89999999976111 111 122 34 48999998863 6677755 566654
No 217
>PRK06855 aminotransferase; Validated
Probab=99.82 E-value=5.5e-19 Score=162.46 Aligned_cols=198 Identities=18% Similarity=0.065 Sum_probs=144.4
Q ss_pred CCeeeeeccCCcC----CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC----C----CcEEEcCChHHHHH
Q psy5413 65 NIRTVDIRSDTIS----KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG----K----EAAIFVPSGTMGNL 130 (285)
Q Consensus 65 ~~~~~~~~~~~~~----~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g----~----~~~~~~~~Gs~a~~ 130 (285)
|.+++++..+++. .+++.+.+++.+.... ...|.+..+..+||+.+++++. . +.+++++|+++|+.
T Consensus 31 g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~ 110 (433)
T PRK06855 31 GVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIA 110 (433)
T ss_pred cccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHH
Confidence 4566777777763 3566777787765532 2457777778899999999863 2 24678888999998
Q ss_pred HHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEE
Q psy5413 131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLV 208 (285)
Q Consensus 131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v 208 (285)
.++. ++ .+||.|++++++|...... .. ...|.+++.++.++ ++.+|+++|+++++. ..+++++
T Consensus 111 ~~~~-l~-~~Gd~Vlv~~P~Y~~~~~~--~~------~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~-----~~~~~~i 175 (433)
T PRK06855 111 KIYG-LL-RREARVIGPSPAYSTHSSA--EA------AHAGYPPVTYRLDPENNWYPDLDDLENKVKY-----NPSIAGI 175 (433)
T ss_pred HHHH-hc-CCCCeEEEeCCCCchHHHH--HH------HhcCCeEEEEecccccCCCCCHHHHHHHHhc-----CCCceEE
Confidence 8885 55 5899999988887543211 11 12366777777643 346899999999964 1157899
Q ss_pred EEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcccC-CeEEEecccccCc--ceeEE
Q psy5413 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCASV-DTVMFCLSKGLGA--PVGSI 275 (285)
Q Consensus 209 ~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~~-dv~~~s~sK~l~~--p~gg~ 275 (285)
++++|+||| |.+++.+++++|+++|++||++||+||+|..+ ..+.... .+++.|+||.+++ .+.|+
T Consensus 176 ~l~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ 254 (433)
T PRK06855 176 LLINPDNPT-GAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGW 254 (433)
T ss_pred EEECCCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEE
Confidence 999999999 99999999999999999999999999998722 1121222 2559999998863 77778
Q ss_pred eec
Q psy5413 276 LAG 278 (285)
Q Consensus 276 ~~~ 278 (285)
++.
T Consensus 255 ii~ 257 (433)
T PRK06855 255 IEV 257 (433)
T ss_pred EEE
Confidence 875
No 218
>PRK06460 hypothetical protein; Provisional
Probab=99.82 E-value=1.6e-19 Score=162.83 Aligned_cols=163 Identities=19% Similarity=0.162 Sum_probs=124.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec-ccccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~ 177 (285)
.++...+|++.+++++|.+..+.+++|++|+..++.+++ ++||+|+++.+.+..++. ..... ...|.++..+
T Consensus 43 ~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al~-~~Gd~Vl~~~~~~~~ty~~~~~~~------~~~G~~v~~~ 115 (376)
T PRK06460 43 ANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALL-KPGNSVLVHRDMFGRSYRFFTDYL------KNWGVNVDAS 115 (376)
T ss_pred CCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCCcCcHHHHHHHHH------HhhCcEEEEE
Confidence 578899999999999999888888999999999998876 699999987654322211 00111 2447777766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. +.+.+++.+++ ++++|++++|+||+ |.++| +++|+++|+++|+++|+||++... ..+.
T Consensus 116 ~~~-----~~~~l~~~~~~-------~tklV~l~sp~NPt-G~v~d---~~~I~~la~~~g~~vivDea~~~~~~~~~l~ 179 (376)
T PRK06460 116 NPG-----SDNIIEKAKSK-------RYDVVFVENITNPL-LRVVD---ITELSKVCKENGSILIVDATFSTPINQKPLE 179 (376)
T ss_pred CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCcCccccCChhh
Confidence 642 23445555544 78999999999999 99999 889999999999999999998832 1223
Q ss_pred ccCCeEEEecccccCcc---eeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~~~i~ 284 (285)
.+.|+++.|+||+++|+ ++|++++++++++
T Consensus 180 ~~~divv~S~sK~l~G~~~~~~G~~~~~~~l~~ 212 (376)
T PRK06460 180 LGADIVVHSASKFLAGHNDVIAGLAAGYGKLLN 212 (376)
T ss_pred cCCCEEEeecceeccCCCCceEEEEecCHHHHH
Confidence 46799999999999873 6889999887654
No 219
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.82 E-value=5.1e-19 Score=163.91 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=145.7
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhccc-------------CCCCccCChhHHHHHHHHHhHcC----------CCcEEEcC
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEV-------------GDDVYLEDPTCKELQEKAAKLAG----------KEAAIFVP 123 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g----------~~~~~~~~ 123 (285)
.+++|.......+...+.+.+.+... ....|....+..+|++.++++++ .+.+++++
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~ 118 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTA 118 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEcc
Confidence 57888765555555566555554311 11236555567789999999874 12357888
Q ss_pred ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhccccccc
Q psy5413 124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIH 201 (285)
Q Consensus 124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~ 201 (285)
|+++++..++.+++ .+||.|++++++|........ ...|.+++.++.. +++.+|++++++++++. ...
T Consensus 119 Ga~~al~~l~~~l~-~pGd~Vlv~~P~Y~~~~~~~~--------~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~-~~~ 188 (468)
T PLN02450 119 GATSANETLMFCLA-EPGDAFLLPTPYYPGFDRDLK--------WRTGVEIVPIHCSSSNGFQITESALEEAYQQA-QKL 188 (468)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEECCCCCCchHHHHh--------hcCCcEEEEEecCCccCCcCCHHHHHHHHHHH-Hhc
Confidence 88999999999887 699999999888754432111 1248888888864 34567889999988652 112
Q ss_pred CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhcc--------cC-Ce-EE
Q psy5413 202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCA--------SV-DT-VM 261 (285)
Q Consensus 202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~--------~~-dv-~~ 261 (285)
+.++++|++++|+||| |.+++.+.+++|+++|++||+++|+||+|..+ ..... .. .+ ++
T Consensus 189 ~~~~k~v~l~nP~NPT-G~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l 267 (468)
T PLN02450 189 NLKVKGVLITNPSNPL-GTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIV 267 (468)
T ss_pred CCCeeEEEEecCCCCC-CcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEE
Confidence 3378999999999999 99999999999999999999999999998721 11111 11 23 39
Q ss_pred EecccccC--cceeEEeecCcc
Q psy5413 262 FCLSKGLG--APVGSILAGPEE 281 (285)
Q Consensus 262 ~s~sK~l~--~p~gg~~~~~~~ 281 (285)
.|+||.++ |.+.|+++++++
T Consensus 268 ~S~SK~~~l~GlRiG~li~~~~ 289 (468)
T PLN02450 268 YSLSKDLGLPGFRVGAIYSNDE 289 (468)
T ss_pred EeccccCCCCCccEEEEEECCH
Confidence 99999875 478888888654
No 220
>PRK06148 hypothetical protein; Provisional
Probab=99.82 E-value=4.7e-19 Score=176.83 Aligned_cols=216 Identities=15% Similarity=0.171 Sum_probs=146.1
Q ss_pred cCCeeeeeccC--CcCCCcHHHHHHHHhcccC---CCCccCChhHHHHHHHHHhHcC--CCcEEEcCChHHHHHHHHHHc
Q psy5413 64 VNIRTVDIRSD--TISKPTMEMKNYMFNCEVG---DDVYLEDPTCKELQEKAAKLAG--KEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 64 ~~~~~~~~~~~--~~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~g--~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.|++++||.++ +.++.||+|.+|+.+++.. +..| .++...++.++|++.+. .+.++|++|||+|++.|++++
T Consensus 622 dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklA 700 (1013)
T PRK06148 622 RGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLA 700 (1013)
T ss_pred CCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHH
Confidence 36677777654 4567999999999988753 2233 46778899999999874 366899999999999999999
Q ss_pred cccCCCe-EE-ecCCcceeeeccccccccccccccc------ceeeeeeecCCC--CC-CC-------HHHHHHHhcccc
Q psy5413 137 CDRRDSE-II-VGDCSHIMLWEQGGASQTSVYSQIG------RVLMRGVTNQKD--GT-FD-------LDEMEAKFSTAD 198 (285)
Q Consensus 137 ~~~~g~~-vi-~~~~~h~~~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~--~~-~d-------~~~l~~~i~~~~ 198 (285)
...+|+. || ....||+.+.....++. ..+...+ +......|.... +. .+ .+.+++.++. .
T Consensus 701 r~~tGr~~ii~~~~~YHG~t~~a~s~s~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~ 778 (1013)
T PRK06148 701 RAHTGQRDAIVLDHAYHGTTTELIDLSP-YKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAA-M 778 (1013)
T ss_pred HHhcCCCeEEEEcCCccCCCcchhhcCc-hhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHh-h
Confidence 8666654 44 36788988755333321 1111111 111112221000 11 11 2456665542 1
Q ss_pred cccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCCeE--EEecccccCc
Q psy5413 199 NIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVDTV--MFCLSKGLGA 270 (285)
Q Consensus 199 ~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~dv~--~~s~sK~l~~ 270 (285)
..+++++++|++|++++..|....|.+++++++++|++||+++|+||+++++. ...++.++. +.+++|++++
T Consensus 779 ~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lgg 858 (1013)
T PRK06148 779 AAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGN 858 (1013)
T ss_pred hccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccC
Confidence 11345799999999999886677889999999999999999999999988442 233445655 7788899987
Q ss_pred --ceeEEeecCcccc
Q psy5413 271 --PVGSILAGPEEFI 283 (285)
Q Consensus 271 --p~gg~~~~~~~~i 283 (285)
|+|+++.+ ++++
T Consensus 859 G~Plgav~~~-~ei~ 872 (1013)
T PRK06148 859 GHPMGAVVTT-REIA 872 (1013)
T ss_pred CcceEEEEEc-HHHH
Confidence 88887765 5554
No 221
>PRK03321 putative aminotransferase; Provisional
Probab=99.82 E-value=1.2e-19 Score=162.62 Aligned_cols=198 Identities=21% Similarity=0.156 Sum_probs=144.6
Q ss_pred eeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 67 RTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
.+++|..+.+.. +.+.+.+++.+.......|. .+...++++.++++++.+ .+++++++++++..++.+++ ++|++
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~-~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~~-~~gd~ 100 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYP-DMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATA-GPGDE 100 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCC-CCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHhc-CCCCE
Confidence 468888776655 67799999887654434454 567899999999999865 35677666777777777766 68999
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
|+++.+.+..... .. ...|.+++.++.++++.+|++++++++++ ++++|++++|+||+ |.++|
T Consensus 101 Vli~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~p~NPt-G~~~~ 163 (352)
T PRK03321 101 VIFAWRSFEAYPI---LV------QVAGATPVQVPLTPDHTHDLDAMAAAITD-------RTRLIFVCNPNNPT-GTVVT 163 (352)
T ss_pred EEeCCCCHHHHHH---HH------HHcCCEEEEccCCCCCCCCHHHHHHhhcc-------CCCEEEEeCCCCCc-CCCcC
Confidence 9988765432211 12 34588888888765677899999999976 78999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccCChh----------hhcccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARLPLA----------EVCASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~~~~----------~~~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++.++++.| ++|+++|+||+|..+. .....-+++ +.|+||.++. .+.|++++++++++
T Consensus 164 ~~~l~~l~~~~-~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~ 236 (352)
T PRK03321 164 PAELARFLDAV-PADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIA 236 (352)
T ss_pred HHHHHHHHHhC-CCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHH
Confidence 66666666544 3699999999976211 111222444 8899999874 56788888887764
No 222
>PRK05968 hypothetical protein; Provisional
Probab=99.82 E-value=2.6e-19 Score=162.28 Aligned_cols=162 Identities=20% Similarity=0.246 Sum_probs=128.1
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+||+.+++++|.+.++++++|+.|+..++.+++ ++||+|+++...|..+.... ... ...|.+++.+
T Consensus 61 ~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v 133 (389)
T PRK05968 61 DNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFV-EPGDRIVAVRHVYPDAFRLFETIL------KRMGVEVDYV 133 (389)
T ss_pred CChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHh-CCCCEEEEeCCCchHHHHHHHHHH------HHcCceEEEe
Confidence 567799999999999999988888999999999998876 69999998877665432111 111 2357777776
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.. |++++++++ + ++++|++|+|+|++ +.+.+ +++|+++|++||+++|+|+++... ....
T Consensus 134 d~~-----d~~~l~~~i-~-------~tklV~ie~pt~~~-~~~~d---l~~i~~la~~~gi~vivD~a~a~~~~~~p~~ 196 (389)
T PRK05968 134 DGR-----DEEAVAKAL-P-------GAKLLYLESPTSWV-FELQD---VAALAALAKRHGVVTMIDNSWASPVFQRPIT 196 (389)
T ss_pred CCC-----CHHHHHHhc-c-------cCCEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCcchhccCchh
Confidence 542 889999888 4 67999999998776 55555 999999999999999999998732 2334
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.++|+++.|++|++++ ++||++++++++++
T Consensus 197 ~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~ 229 (389)
T PRK05968 197 LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIA 229 (389)
T ss_pred cCCcEEEeeccccccCCCCeEEEEEEECHHHHH
Confidence 5789999999999998 46899988877654
No 223
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.82 E-value=2.6e-19 Score=161.86 Aligned_cols=162 Identities=16% Similarity=0.155 Sum_probs=126.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec-ccccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~ 177 (285)
++|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.. ...+. ...+.++..+
T Consensus 50 ~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l~-~~GD~Vl~~~~~y~~~~~~~~~~~------~~~gi~v~~v 122 (386)
T PRK08045 50 GNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFL-KPGDLLVAPHDCYGGSYRLFDSLA------KRGCYRVLFV 122 (386)
T ss_pred CCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHH------hhCCeEEEEe
Confidence 577899999999999998888999999999999998877 699999998877653322 11111 1234454444
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+ ..|++++++++++ ++++|++++|+||+ |.+.| +++|.++|+++|+++|+|++|... ..+.
T Consensus 123 d-----~~d~e~l~~~l~~-------~tklV~l~sP~NPt-G~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~~pl~ 186 (386)
T PRK08045 123 D-----QGDEQALRAALAE-------KPKLVLVESPSNPL-LRVVD---IAKICHLAREAGAVSVVDNTFLSPALQNPLA 186 (386)
T ss_pred C-----CCCHHHHHHhccc-------CCeEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCCccccCCchh
Confidence 3 2489999999977 78999999999999 89999 899999999999999999998832 2344
Q ss_pred ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++|+ ++|+++. +++++
T Consensus 187 ~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~ 219 (386)
T PRK08045 187 LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV 219 (386)
T ss_pred hCCCEEEeecceeccCCCCceeEEEEeCcHHHH
Confidence 57899999999999873 4566644 55543
No 224
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=99.82 E-value=1e-18 Score=159.63 Aligned_cols=192 Identities=17% Similarity=0.125 Sum_probs=139.3
Q ss_pred eeeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHH----HHHhHcCCCcEE-EcCChHHHHHHHHHH
Q psy5413 69 VDIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQE----KAAKLAGKEAAI-FVPSGTMGNLIAIMT 135 (285)
Q Consensus 69 ~~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~----~la~~~g~~~~~-~~~~Gs~a~~~al~~ 135 (285)
-.+.++|+. +|++++++.....+ ...|..++...+|++ .+++++|.+.++ +++||+.|+..++.+
T Consensus 32 ~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~a 109 (416)
T PRK13034 32 ELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLA 109 (416)
T ss_pred eecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHH
Confidence 345666664 99999998877421 123334678999999 999999999984 579999999999999
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceee--eeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM--RGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
++ ++||+|+++...|......+... ...+..+ ..+..+ ..+.+|++++++.++.. ++++|+++.
T Consensus 110 l~-~~GD~Vl~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~------~~klVi~~~ 176 (416)
T PRK13034 110 LL-KPGDTILGMSLSHGGHLTHGAKV------SLSGKWYNAVQYGVDRLTGLIDYDEVEELAKEH------KPKLIIAGF 176 (416)
T ss_pred hc-CCCCEEEEcCccceeeeecCCcc------eeccceeeeEEcccccccCCcCHHHHHHHHhhc------CCeEEEECC
Confidence 87 69999999988887643322221 0112111 233322 24558999999998652 568888865
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCcc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEE 281 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~ 281 (285)
+.+ |...| +++|.++|++||+++|+|++|+ +.. ....++|++++|++|++++|.||+++++++
T Consensus 177 ~~~---g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v~~~~~ 246 (416)
T PRK13034 177 SAY---PRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMILTNDE 246 (416)
T ss_pred Ccc---ccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEEEECcH
Confidence 432 77778 9999999999999999999987 211 112468999999999998888998877654
No 225
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=2.5e-19 Score=161.57 Aligned_cols=196 Identities=15% Similarity=0.043 Sum_probs=141.8
Q ss_pred eeeeccCC-cCCCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413 68 TVDIRSDT-ISKPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 68 ~~~~~~~~-~~~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~ 134 (285)
.++|..+. +..+++.+.+++.+.+.. ...|. ++...+|++.+++++ |. +.+++++|+++++..++.
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~ 106 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQ 106 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHH
Confidence 47777554 445778999998876431 23554 456788999999998 32 345788888999999999
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
+++ ++||.|++..++|..... .. ...|.+++.++..+++.+|++++++++++. ++++|++++|+
T Consensus 107 ~~~-~~gd~v~v~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~d~~~l~~~~~~~------~~~~i~l~~p~ 170 (368)
T PRK03317 107 AFG-GPGRTALGFVPSYSMHPI---IA------RGTHTEWVEGPRAADFTLDVDAAVAAIAEH------RPDVVFLTSPN 170 (368)
T ss_pred Hhc-CCCCEEEEeCCChHHHHH---HH------HhcCCeeEEcccCCCCCCCHHHHHHHHhcc------CCCEEEEeCCC
Confidence 887 689999988887654332 22 344778888876556778999999999752 67889999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh--------hhcc-cCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVCA-SVDTV-MFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~--------~~~~-~~dv~-~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
||| |.+++.+++++|++ .+++++|+||+|..+. .... .-+++ +.|+||.++. .+.|++++++++
T Consensus 171 NPt-G~~~~~~~l~~l~~---~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~ 246 (368)
T PRK03317 171 NPT-GTALPLDDVEAILD---AAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAV 246 (368)
T ss_pred CCC-CCCCCHHHHHHHHH---HCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHH
Confidence 999 99999555555555 4589999999987321 1111 22444 8899998863 556788888776
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 247 ~~ 248 (368)
T PRK03317 247 VD 248 (368)
T ss_pred HH
Confidence 54
No 226
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=99.81 E-value=7.2e-19 Score=161.34 Aligned_cols=241 Identities=13% Similarity=0.093 Sum_probs=157.4
Q ss_pred hhhhcccCCCCCccc--ccccccccccc-CCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHH--HHHHhc
Q psy5413 16 KIAREVLTLPTPALV--ESTPLSRSWSD-NGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMK--NYMFNC 90 (285)
Q Consensus 16 ~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~a~~~~ 90 (285)
...+++.+...|..+ .++.+.+.|+. .++.+++.+..|+.. +.++.||+|. +|+.++
T Consensus 7 ~~~~~~~~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~------------------~lGh~~p~v~~~~ai~~q 68 (431)
T TIGR03251 7 VLSRHMLTDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASM------------------ALGMNHPALVDDLAFRAR 68 (431)
T ss_pred HHHHHhhccCCceeeEEEeccCCEEEECCCCCChhhcccChhhc------------------CCCCCChhhhHHHHHHHH
Confidence 344666666556664 78999999995 888887777776653 2378999999 898877
Q ss_pred ccCCC----C--ccCChhHHHHHHHHHhHc---CCCcEEEcCChHHHHHHHHHHccccC-------C------CeEEe-c
Q psy5413 91 EVGDD----V--YLEDPTCKELQEKAAKLA---GKEAAIFVPSGTMGNLIAIMTHCDRR-------D------SEIIV-G 147 (285)
Q Consensus 91 ~~~~~----~--y~~~~~~~~l~~~la~~~---g~~~~~~~~~Gs~a~~~al~~~~~~~-------g------~~vi~-~ 147 (285)
+.... . ....+...++.++|+++. +.+.++|++|||+|++.|++++.... | .+|+. .
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~ 148 (431)
T TIGR03251 69 LGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLR 148 (431)
T ss_pred HHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEEC
Confidence 65311 1 123455677777777774 34678999999999999999986321 2 34544 5
Q ss_pred CCcceeeecccccccccccccccceee----eeee-----cCCCC--------CCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLM----RGVT-----NQKDG--------TFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~----~~~~-----~~~~~--------~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
..||+.+.....+.....+...+...+ +..| ..... ..+++++++.+.. +.+++++|++
T Consensus 149 ~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~iAaviv 224 (431)
T TIGR03251 149 QAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE----RPHDIACFIA 224 (431)
T ss_pred CccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh----CCCcEEEEEE
Confidence 788988765443321111111111100 0111 10000 0235556666654 3458999999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----hhhcccCCeE--EEecccccCcceeEEeecCc
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----AEVCASVDTV--MFCLSKGLGAPVGSILAGPE 280 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~p~gg~~~~~~ 280 (285)
|++++.+|....|++++++|+++|++||+++|+||+++++ ....+..++. +.+++|.+ |.+|++++++
T Consensus 225 EPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~--~~~g~~~~~~ 299 (431)
T TIGR03251 225 EPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKT--QVCGIMAGRR 299 (431)
T ss_pred eccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccC--ccceEEecch
Confidence 9999988666678999999999999999999999998833 2223333433 45678986 5677777754
No 227
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=5.3e-19 Score=158.42 Aligned_cols=196 Identities=17% Similarity=0.161 Sum_probs=144.5
Q ss_pred eeeeccCCcCC-CcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 68 TVDIRSDTISK-PTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
.++|..+.+.. +++.+.+++.+.... ...|. ++...++++.++++++.+ .+++++|+++++..++.+++ ++||
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l~-~~gd 101 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAFI-NKGD 101 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHhc-CCCC
Confidence 46777665554 567999998775542 23454 345789999999999864 46788888888999888876 6899
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|+++++++..... .. ...|.+++.++.++++.+|++++++++++. ++++|++++|+||| |.++
T Consensus 102 ~Vlv~~p~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~------~~k~v~l~~p~NPt-G~~~ 165 (351)
T PRK14807 102 VVIYPHPSFAMYSV---YS------KIAGAVEIPVKLKEDYTYDVGSFIKVIEKY------QPKLVFLCNPNNPT-GSVI 165 (351)
T ss_pred EEEEeCCChHHHHH---HH------HHcCCeEEEeecCCCCCCCHHHHHHHhhcc------CCCEEEEeCCCCCC-CCCC
Confidence 99998877643222 22 345888899888666779999999999642 68999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+ .+++.++|++++.++|+||+|..+. .... ... +++.|+||.++. .+.|++++++++++
T Consensus 166 ~---~~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~ 233 (351)
T PRK14807 166 E---REDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILK 233 (351)
T ss_pred C---HHHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHH
Confidence 9 5556666667788999999986221 1112 222 448999999863 67789988887654
No 228
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.81 E-value=6.2e-19 Score=159.56 Aligned_cols=192 Identities=20% Similarity=0.238 Sum_probs=139.5
Q ss_pred eccCCcCCCcHHHHHHHHhcccC---CC--Ccc----CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccc-
Q psy5413 71 IRSDTISKPTMEMKNYMFNCEVG---DD--VYL----EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCD- 138 (285)
Q Consensus 71 ~~~~~~~~~~~~v~~a~~~~~~~---~~--~y~----~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~- 138 (285)
|.+...+..++++++++.+.... .. .+. ......++++.+++++|.+. ++|++||++++..++.++..
T Consensus 3 ld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~ 82 (379)
T TIGR03402 3 LDNNATTRVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA 82 (379)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh
Confidence 33444455678999998765431 11 111 12346788899999999754 68999999999999987642
Q ss_pred -cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC
Q psy5413 139 -RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217 (285)
Q Consensus 139 -~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~ 217 (285)
.+++.|++....|.+........ ...|.+++.++.++++.+|++++++++++ ++++|++++++|++
T Consensus 83 ~~~~~~vv~~~~~~~s~~~~~~~~------~~~G~~v~~v~~~~~g~~~~~~l~~~i~~-------~~~lv~i~~~~n~t 149 (379)
T TIGR03402 83 QPEKRHIITTAVEHPAVLSLCQHL------EKQGYKVTYLPVDEEGRLDLEELRAAITD-------DTALVSVMWANNET 149 (379)
T ss_pred cCCCCeEEEcccccHHHHHHHHHH------HHcCCEEEEEccCCCCcCCHHHHHHhcCC-------CcEEEEEEcccCCe
Confidence 34577888777775432211111 23588888888767778999999999987 78999999999999
Q ss_pred CeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCcce-eEEeecCc
Q psy5413 218 GGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPV-GSILAGPE 280 (285)
Q Consensus 218 gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~ 280 (285)
|.++| +++|+++|++||+++|+|++|+ + +.....++|++++|.+|. .+|. .|++..++
T Consensus 150 -G~~~~---~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~-~gp~G~g~l~v~~ 212 (379)
T TIGR03402 150 -GTIFP---IEEIGEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKL-HGPKGVGALYIRK 212 (379)
T ss_pred -eeccc---HHHHHHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHc-CCCCceEEEEECC
Confidence 99999 8999999999999999999988 2 222235789999999994 5544 34554443
No 229
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.81 E-value=5.8e-19 Score=160.99 Aligned_cols=202 Identities=14% Similarity=0.069 Sum_probs=146.1
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~~~al~ 134 (285)
+..+++|..+.+..+ ++.+.+++.+.... ...|....+..++++.+++++ |. +.+++++|+++|+..++.
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (402)
T PRK06107 32 GRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM 111 (402)
T ss_pred cCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence 456788888777764 56888887776542 345665555667777776653 43 336888888999999998
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+++ .+|+.|++++++|....... ...+...+.++.+ .++.+|++++++.+.+ ++++|++++
T Consensus 112 ~~~-~~gd~vl~~~p~y~~y~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~-------~~~~v~l~~ 174 (402)
T PRK06107 112 ATL-EAGDEVIIPAPYWVSYPDMV---------LANDGTPVIVACPEEQGFKLTPEALEAAITP-------RTRWLILNA 174 (402)
T ss_pred Hhc-CCCCEEEEecCCCcCHHHHH---------HHcCCEEEEecCCcccCCCCCHHHHHhhcCc-------CceEEEEEC
Confidence 876 58999999888654332211 1224455555553 2356899999999876 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHc-CCeEEEeCccCCh----------hhhccc--CCeE-EEecccccCc--ceeEEe
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEH-NIPVHMDGARLPL----------AEVCAS--VDTV-MFCLSKGLGA--PVGSIL 276 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~Dea~~~~----------~~~~~~--~dv~-~~s~sK~l~~--p~gg~~ 276 (285)
|+||| |.+++.+++++|+++|++| |+++|+||+|..+ ..+..+ ..++ +.|+||.++. .+.|++
T Consensus 175 p~NPt-G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~ 253 (402)
T PRK06107 175 PSNPT-GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYA 253 (402)
T ss_pred CCCCC-CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeee
Confidence 99999 9999999999999999998 9999999998621 111111 1344 8999999864 677888
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 254 ~~~~~~~~ 261 (402)
T PRK06107 254 AGPADLIA 261 (402)
T ss_pred ecCHHHHH
Confidence 88887764
No 230
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.81 E-value=6e-19 Score=152.46 Aligned_cols=198 Identities=17% Similarity=0.153 Sum_probs=137.8
Q ss_pred eeeeccCCcCC-CcHHHHHHHHhcccC-CCCcc--CChhHHHHHHHHHhHcC----CCcEEEcCChHHHHHHHHHHcccc
Q psy5413 68 TVDIRSDTISK-PTMEMKNYMFNCEVG-DDVYL--EDPTCKELQEKAAKLAG----KEAAIFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~-~~~y~--~~~~~~~l~~~la~~~g----~~~~~~~~~Gs~a~~~al~~~~~~ 139 (285)
++.+--..+.. ..|+|++|+++.... ..+|. ++.....+....++..+ .+..+|+.+..-++..+++++. +
T Consensus 27 vlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T-~ 105 (388)
T COG1168 27 VLPMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT-K 105 (388)
T ss_pred cceeeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC-c
Confidence 33333333344 577999999887652 23333 33334444444444443 2345889999999999999976 7
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecC-CC--CCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
+||.|++..+.|........ ..|.+++..|.. ++ +.+|+++||+++.+. +++++++|+|+||
T Consensus 106 ~gd~Vvi~tPvY~PF~~~i~---------~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~------~vkl~iLCnPHNP 170 (388)
T COG1168 106 PGDGVVIQTPVYPPFYNAIK---------LNGRKVIENPLVEDDGRYEIDFDALEKAFVDE------RVKLFILCNPHNP 170 (388)
T ss_pred CCCeeEecCCCchHHHHHHh---------hcCcEEEeccccccCCcEEecHHHHHHHHhcC------CccEEEEeCCCCC
Confidence 99999998776654444222 337788877754 23 457999999999762 6799999999999
Q ss_pred CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhc-ccCC--eEEEecccccCc--ceeE-EeecCc
Q psy5413 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVC-ASVD--TVMFCLSKGLGA--PVGS-ILAGPE 280 (285)
Q Consensus 217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~-~~~d--v~~~s~sK~l~~--p~gg-~~~~~~ 280 (285)
+ |.+++.++|.+|.++|++||+.||.||+|..+ ..+. ..+| +.+.+.||++.. ...+ +++.++
T Consensus 171 ~-Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~ 249 (388)
T COG1168 171 T-GRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNR 249 (388)
T ss_pred C-CccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCH
Confidence 9 99999999999999999999999999998821 1122 1234 448889998654 4444 445555
Q ss_pred cc
Q psy5413 281 EF 282 (285)
Q Consensus 281 ~~ 282 (285)
++
T Consensus 250 ~l 251 (388)
T COG1168 250 EL 251 (388)
T ss_pred HH
Confidence 43
No 231
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=3e-19 Score=161.10 Aligned_cols=197 Identities=14% Similarity=0.029 Sum_probs=145.3
Q ss_pred eeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 68 TVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 68 ~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
+++|..+.+.. +++.+.+++.+.......|+.. ...+|++.++++++.+ .+++++|+++++..++.+++ ++||.|
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~~-~~gd~v 111 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLYV-EPGDPV 111 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCEE
Confidence 35888665554 6779999987765333456533 4789999999999864 46788888888888888877 589999
Q ss_pred EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413 145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM 224 (285)
Q Consensus 145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~ 224 (285)
++++++|...... . ...|.+++.+|...+ ..|++++++.+... ++++|++++|+||| |.+++.
T Consensus 112 lv~~p~y~~~~~~---~------~~~g~~~~~vp~~~~-~~~~~~l~~~~~~~------~~~~i~l~~P~NPt-G~~~~~ 174 (369)
T PRK08153 112 VTSLGAYPTFNYH---V------AGFGGRLVTVPYRDD-REDLDALLDAARRE------NAPLVYLANPDNPM-GSWHPA 174 (369)
T ss_pred EECCCcchHHHHH---H------HHcCCeEEEeeCCCC-CCCHHHHHHHhccc------CCcEEEEeCCCCCC-CCCCCH
Confidence 9988876543221 1 234788888887444 47899988776532 68999999999999 999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeCccCChh------hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 225 QWLRELKARCQEHNIPVHMDGARLPLA------EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 225 ~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++++++++|+ +|++||+||+|..+. .+.. .-+ +++.||||.++. .+.|++++++++++
T Consensus 175 ~~l~~l~~~~~-~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~ 243 (369)
T PRK08153 175 ADIVAFIEALP-ETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIK 243 (369)
T ss_pred HHHHHHHHhCC-CCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHH
Confidence 99999999887 599999999987221 1111 223 449999999873 66788888877654
No 232
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.81 E-value=2.3e-19 Score=163.50 Aligned_cols=196 Identities=16% Similarity=0.086 Sum_probs=145.6
Q ss_pred CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccCCCeEEecCCc
Q psy5413 74 DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCS 150 (285)
Q Consensus 74 ~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~ 150 (285)
-.|...+++|++++.+....+..........++++.+++++|.+. .+++++|+++++.++..++ ++||+|++.+..
T Consensus 15 pGP~~~~~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~~-~~Gd~Vlv~~~~ 93 (401)
T PLN02409 15 PGPVNIPERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNTL-SPGDKVVSFRIG 93 (401)
T ss_pred CCCCCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhcC-CCCCEEEEeCCC
Confidence 334557889999997765444322234557788888889988753 4899999999999998876 699999988766
Q ss_pred ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHH
Q psy5413 151 HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLREL 230 (285)
Q Consensus 151 h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i 230 (285)
|.... +.... +..|.+++.++.+++...|+++++++++++. ..++++|+++++.|+| |.++| +++|
T Consensus 94 ~~~~~-~~~~~------~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~---~~~~k~v~~~~~~~~t-G~~~~---~~~i 159 (401)
T PLN02409 94 QFSLL-WIDQM------QRLNFDVDVVESPWGQGADLDILKSKLRQDT---NHKIKAVCVVHNETST-GVTND---LAGV 159 (401)
T ss_pred chhHH-HHHHH------HHcCCceEEEECCCCCCCCHHHHHHHHhhCc---CCCccEEEEEeecccc-cccCC---HHHH
Confidence 54321 11222 3458888888876555689999999997510 0268999999999999 99999 6777
Q ss_pred HHH--HHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413 231 KAR--CQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 231 ~~l--a~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
.++ |+++|+++++|++++ +... ...++|+++.+.+|||++ +..|+++.++++++
T Consensus 160 ~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~ 220 (401)
T PLN02409 160 RKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALE 220 (401)
T ss_pred HHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHH
Confidence 777 999999999999988 2222 235789999999999988 44677777766543
No 233
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.81 E-value=3e-19 Score=161.13 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=127.3
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+..+++++|+.++..++. ++ ++||+|+++++.|..++... ... ...|++++.+
T Consensus 48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~l-~~Gd~Viv~~~~y~~~~~~~~~~~------~~~G~~v~~v 119 (377)
T PRK07671 48 GNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-LF-SSGDHVILTDDVYGGTYRVMTKVL------NRFGIEHTFV 119 (377)
T ss_pred CChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-Hh-CCCCEEEECCCccchHHHHHHHHH------hcCCeEEEEE
Confidence 578899999999999999999999999998877664 45 68999999888765433211 111 2357787777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|+++++++|++ ++++|++++|+||+ |.+.+ +++|+++|+++|+++++|+++... ....
T Consensus 120 ~~-----~d~~~l~~ai~~-------~tklV~le~P~NPt-g~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~~p~~ 183 (377)
T PRK07671 120 DT-----SNLEEVEEAIRP-------NTKAIYVETPTNPL-LKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQSPIS 183 (377)
T ss_pred CC-----CCHHHHHHhcCC-------CCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCEEEEECCCCccccCChhh
Confidence 64 389999999987 79999999999999 89998 999999999999999999998721 2234
Q ss_pred ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++++ .+|+++. +++++
T Consensus 184 ~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~ 216 (377)
T PRK07671 184 LGADIVLHSATKYLGGHSDVVAGLVVVNSPELA 216 (377)
T ss_pred hCCeEEEecCcccccCCccceeEEEEeCcHHHH
Confidence 57899999999999984 5665554 55554
No 234
>KOG1402|consensus
Probab=99.81 E-value=2.4e-19 Score=151.46 Aligned_cols=205 Identities=18% Similarity=0.204 Sum_probs=143.0
Q ss_pred CCeeeeecc----CCcCCCcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 65 NIRTVDIRS----DTISKPTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 65 ~~~~~~~~~----~~~~~~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
|++++||-+ -|-+++||.+.+++++|... ...|. +..+.++++.+.+++|.+.++-+++|.+|++.|++++
T Consensus 58 Gk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafY-nd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLa 136 (427)
T KOG1402|consen 58 GKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFY-NDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLA 136 (427)
T ss_pred ccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHh-hhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHH
Confidence 555566543 24467999999999988763 22333 3458899999999999999999999999999999998
Q ss_pred cccCC---------CeEEe--cCCcceeeeccccccccc-ccccccceeeee-eecCCCCCCCHHHHHHHhcccccccCC
Q psy5413 137 CDRRD---------SEIIV--GDCSHIMLWEQGGASQTS-VYSQIGRVLMRG-VTNQKDGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 137 ~~~~g---------~~vi~--~~~~h~~~~~~~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
. ++| +.+|+ .+..|+-+..+..++.++ -|. .+|.-+-. +..-+.+ |.++|+.+++..
T Consensus 137 R-~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~-~fgp~~P~~~~~v~Y~--d~eale~~l~~~------ 206 (427)
T KOG1402|consen 137 R-KWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWD-GFGPFLPGVVDKVPYG--DAEALEVALKSP------ 206 (427)
T ss_pred H-HHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhh-ccCCCCCCcceeeccC--CHHHHHHHhcCC------
Confidence 6 332 22343 466676554322222221 221 22332221 1111233 899999999762
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCeE--EEecccccCc---cee
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDTV--MFCLSKGLGA---PVG 273 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv~--~~s~sK~l~~---p~g 273 (285)
+++++++|+.|+..|-.+.|+.+|++++++|++|++++|.||+|+++. .++++..+. +.-+.|.|+| |..
T Consensus 207 ~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvs 286 (427)
T KOG1402|consen 207 NVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVS 286 (427)
T ss_pred CeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeE
Confidence 899999999999995556668999999999999999999999998543 223332222 4445599988 999
Q ss_pred EEeecCc
Q psy5413 274 SILAGPE 280 (285)
Q Consensus 274 g~~~~~~ 280 (285)
++++.++
T Consensus 287 avl~~~~ 293 (427)
T KOG1402|consen 287 AVLADDD 293 (427)
T ss_pred EEEecHH
Confidence 9887754
No 235
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.81 E-value=2.4e-19 Score=166.07 Aligned_cols=199 Identities=13% Similarity=0.045 Sum_probs=143.0
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHH-hHc----C----CC---cEEEcCChHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAA-KLA----G----KE---AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la-~~~----g----~~---~~~~~~~Gs~a~~~al 133 (285)
+.++++..+.+..+.++++.++.+...+. .|.......++++.++ +++ + .+ .+++++||++|+..++
T Consensus 94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~ 172 (521)
T TIGR03801 94 RDIISYVIDQLGFDPDAFLYEMCDGIIGD-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIF 172 (521)
T ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHhhcC-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHH
Confidence 45678888888888778778877765544 4653334444444444 332 1 11 4688899999999888
Q ss_pred HH-----ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--C-----CCCCHHHHHHHhccccccc
Q psy5413 134 MT-----HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--D-----GTFDLDEMEAKFSTADNIH 201 (285)
Q Consensus 134 ~~-----~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~-----~~~d~~~l~~~i~~~~~~~ 201 (285)
.+ ++ .+||+|+++.+++........+. ..+.+++.++.++ . +.+|++++++++++
T Consensus 173 ~~l~~~~ll-~pGD~Vlv~~P~y~~y~~~~~l~-------~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~----- 239 (521)
T TIGR03801 173 DSLKANELL-KKGDKIALMTPIFTPYLEIPELP-------RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP----- 239 (521)
T ss_pred HHHhHhhcC-CCCCEEEEeCCCcHHHHHHHHHh-------cCCcEEEEeecccccccccccCCCCHHHHHHhcCC-----
Confidence 76 45 69999999988865443321121 2467777777532 1 67899999998876
Q ss_pred CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc--CCeEEEeCccCChh----hhcc-cC-C-eEEEecccccCc--
Q psy5413 202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH--NIPVHMDGARLPLA----EVCA-SV-D-TVMFCLSKGLGA-- 270 (285)
Q Consensus 202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~--gi~li~Dea~~~~~----~~~~-~~-d-v~~~s~sK~l~~-- 270 (285)
++++|++++|+||| |.+++.+++++|+++|++| |++||+||+|..+. .+.. .. . +++.|+||.+++
T Consensus 240 --~~kai~l~nP~NPT-G~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G 316 (521)
T TIGR03801 240 --SIKALFVVNPSNPP-SVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATG 316 (521)
T ss_pred --CCcEEEEeCCCCCC-CCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCch
Confidence 89999999999999 9999999999999999987 99999999987221 1111 11 2 448999998864
Q ss_pred ceeEEeecCcc
Q psy5413 271 PVGSILAGPEE 281 (285)
Q Consensus 271 p~gg~~~~~~~ 281 (285)
.+.|+++.+++
T Consensus 317 ~RlG~i~~~~~ 327 (521)
T TIGR03801 317 WRLGTIALHKD 327 (521)
T ss_pred hhhhhhhcCch
Confidence 77788887654
No 236
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.81 E-value=3.7e-19 Score=160.73 Aligned_cols=162 Identities=16% Similarity=0.143 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||++|+..++.+++ ++||+|+++.+.|..+... ..+. ...+.++..+
T Consensus 49 ~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~all-~~GD~Vl~~~p~y~~~~~~~~~~~------~~~~~~v~~~ 121 (382)
T TIGR02080 49 GNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTALL-GPDDLLVAPHDCYGGTYRLLNALA------KKGCFRVLFV 121 (382)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHc-CCCCEEEEcCCCcHHHHHHHHHHH------hhcCeEEEEE
Confidence 578899999999999998889999999999999999887 6999999988777543221 1111 1224444443
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.++| +++|+++|+++|+++++|++|... ..+.
T Consensus 122 d~-----~d~~~l~~ai~~-------~tklV~l~~p~NPt-G~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~pl~ 185 (382)
T TIGR02080 122 DQ-----GDEQALRAALAQ-------KPKLVLIETPSNPL-LRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQNPLA 185 (382)
T ss_pred CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-CEecC---HHHHHHHHHHcCCEEEEECCCcccccCCchh
Confidence 32 388999999987 78999999999999 89999 899999999999999999998722 1233
Q ss_pred ccCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++| .++|+++. +++++
T Consensus 186 ~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~ 218 (382)
T TIGR02080 186 LGADLVLHSCTKYLNGHSDVIAGAVIAKDPQVA 218 (382)
T ss_pred hCCCEEEeecceeccCCCCceeEEEEeCCHHHH
Confidence 4789999999999987 35777654 55544
No 237
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.81 E-value=2.7e-19 Score=161.23 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=131.6
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....|++.++.+.+.+..+++.||++|+..++.+++ ++||+|+++++.|..+.... ... ..+|.++..+
T Consensus 62 gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all-~~GD~Vlv~~~~Y~~~~~l~~~~l------~~~Gi~v~~v 134 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFL-SPGDHALIVDSVYYPTRHFCDTML------KRLGVEVEYY 134 (395)
T ss_pred CChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhc-CCCCEEEEccCCcHHHHHHHHHHH------HhcCeEEEEe
Confidence 678899999999999988888999999999999998877 69999999887765543211 122 3557787776
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~ 254 (285)
+.. +.+.+++++++ +|++|++++|+||+ +.+.| |++|+++|+++|+++++|+++.. ...+.
T Consensus 135 d~~-----~~e~l~~al~~-------~TklV~lesPsNP~-l~v~d---l~~I~~la~~~g~~vvVD~t~a~p~~~~pl~ 198 (395)
T PRK05967 135 DPE-----IGAGIAKLMRP-------NTKVVHTEAPGSNT-FEMQD---IPAIAEAAHRHGAIVMMDNTWATPLYFRPLD 198 (395)
T ss_pred CCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHhCCEEEEECCccCceecChhH
Confidence 532 45789999987 89999999999998 77777 99999999999999999999883 34455
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
.++|+++.|.+|+++| -++|+++.++++
T Consensus 199 ~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~ 229 (395)
T PRK05967 199 FGVDISIHAATKYPSGHSDILLGTVSANEKC 229 (395)
T ss_pred cCCCEEEEecccccCCCCCeeEEEEEcCHHH
Confidence 7899999999999988 667777777654
No 238
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.81 E-value=3e-19 Score=163.80 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=141.8
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC-CCccCChhHHHHHHHHHhHc-CCCcEEEcCChHHHHHHHHHHccc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLA-GKEAAIFVPSGTMGNLIAIMTHCD 138 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~-~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~Gs~a~~~al~~~~~ 138 (285)
|++++||.++ +.++.+|++.+++.+++... ..+...+...+|.+.|++++ +.++++|++||++|++.|++++..
T Consensus 49 G~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~ 128 (426)
T PRK00062 49 GNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARG 128 (426)
T ss_pred CCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 6778888765 34579999999999887642 23345677889999999876 567789999999999999999875
Q ss_pred cCC-CeEEe-cCCcceeeeccccccccc--ccccc-cceeeeeee--cCCCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 139 RRD-SEIIV-GDCSHIMLWEQGGASQTS--VYSQI-GRVLMRGVT--NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 139 ~~g-~~vi~-~~~~h~~~~~~~~~~~~~--~~~~~-~g~~~~~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
..| ++|+. ...||+.+......+... .+... .+.....++ .......|++++++.++. +.+++++|++|
T Consensus 129 ~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~aaiivE 204 (426)
T PRK00062 129 YTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEE----YGDEIAAVIVE 204 (426)
T ss_pred HhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHh----CCCcEEEEEEe
Confidence 434 34444 577888763222221000 00000 000000000 000112388999998865 23479999999
Q ss_pred cccCCCCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeE--EEecccccCc--ceeEEeecCccc
Q psy5413 212 NTHNYCGGTVL-PMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTV--MFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 212 ~~~n~~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~--~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
++++.+ |.+. +.+++++|+++|++||+++|+||+|+++. ...+..++. +.+++|.+++ |.|++ +.++++
T Consensus 205 pv~~~~-G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~~~gK~l~~G~p~ga~-~~~~~i 282 (426)
T PRK00062 205 PVAGNM-GVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLTTLGKIIGGGLPVGAF-GGRREI 282 (426)
T ss_pred CCcCCC-CCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchHhhhhHhhCCCcceee-eEHHHH
Confidence 988887 6565 48999999999999999999999988541 122222322 4678899987 66665 555555
Q ss_pred cc
Q psy5413 283 IQ 284 (285)
Q Consensus 283 i~ 284 (285)
++
T Consensus 283 ~~ 284 (426)
T PRK00062 283 ME 284 (426)
T ss_pred HH
Confidence 43
No 239
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.81 E-value=4.1e-19 Score=159.85 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=140.2
Q ss_pred CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEe-cCCcc
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIV-GDCSH 151 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~~~~h 151 (285)
...+++|.+++.... ++..-.......++++.+++++|.+. ++++.|||++++.++..+.. +++.+++ .+.+|
T Consensus 12 ~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l~~-~~~~vlv~~~~~~ 89 (363)
T TIGR02326 12 LTTSRTVKEAMLFDW-CTWDSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSAVP-KDGKLLVVINGAY 89 (363)
T ss_pred CCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhcCC-CCCeEEEEeCChh
Confidence 446788888887655 33211223457888999999999752 57899999999999998874 6666544 45444
Q ss_pred eeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHH
Q psy5413 152 IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELK 231 (285)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~ 231 (285)
.... ...+ +..|.+++.++.++++.+|+++++++++++ .++++|.+.++.|+| |.++| +++|.
T Consensus 90 ~~~~--~~~a------~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~t-G~~~~---i~~I~ 152 (363)
T TIGR02326 90 GARI--VQIA------EYLGIPHHVVDTGEVEPPDVVEVEAILAAD-----PAITHIALVHCETTT-GILNP---IEAVA 152 (363)
T ss_pred hHHH--HHHH------HHcCCceEEEeCCCCCCCCHHHHHHHHhhC-----CCccEEEEEeecCCc-cccCc---HHHHH
Confidence 3211 1122 345888888888777789999999999752 146788888889998 99999 99999
Q ss_pred HHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCccee-EEeecCccccc
Q psy5413 232 ARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 284 (285)
Q Consensus 232 ~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~ 284 (285)
++|++||+++++|++++ ++.....++|+++.|++|||++|.| |+++.+++.++
T Consensus 153 ~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~ 210 (363)
T TIGR02326 153 KLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELA 210 (363)
T ss_pred HHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHH
Confidence 99999999999999977 2222234789999999999988555 88877766543
No 240
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.81 E-value=3.1e-19 Score=162.19 Aligned_cols=162 Identities=17% Similarity=0.178 Sum_probs=127.6
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+..++++||++|+..++.+++ ++||+|+++.+.|..+... .... ...|.+++.+
T Consensus 58 ~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~all-~pGD~Vvv~~p~Y~~t~~~~~~~~------~~~g~~v~~v 130 (405)
T PRK08776 58 GNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNALL-QPGDTLVVPHDAYGGSWRLFNALA------KKGHFALITA 130 (405)
T ss_pred CChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHHh-CCCCEEEEccCCchHHHHHHHHHH------HhcCcEEEEE
Confidence 467789999999999999888999999999999998876 6999999887766543210 1111 2346677766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.+.+ +++|+++|+++|+++|+|++|... ..+.
T Consensus 131 ~~-----~d~~~l~~~i~~-------~tklV~l~~P~NPt-G~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~~~pl~ 194 (405)
T PRK08776 131 DL-----TDPRSLADALAQ-------SPKLVLIETPSNPL-LRITD---LRFVIEAAHKVGALTVVDNTFLSPALQKPLE 194 (405)
T ss_pred CC-----CCHHHHHHhcCc-------CCeEEEEECCCCCC-CccCC---HHHHHHHHHHcCCEEEEECCCcccccCCccc
Confidence 54 388999999976 78999999999999 88888 999999999999999999998822 2233
Q ss_pred ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++++ +||+++. ++++.
T Consensus 195 ~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~ 227 (405)
T PRK08776 195 FGADLVLHSTTKYINGHSDVVGGAVVARDAELH 227 (405)
T ss_pred ccCCEEEecCceeecCCCCceEEEEEeCCHHHH
Confidence 57899999999999874 4666654 45543
No 241
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.81 E-value=4.2e-19 Score=160.31 Aligned_cols=158 Identities=23% Similarity=0.225 Sum_probs=126.4
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.+++++|.+.++++++|+.|+..++. ++ ++||+|++++..|..+... .... ...|.+++.+
T Consensus 45 ~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-ll-~~Gd~Vl~~~~~y~~~~~~~~~~~------~~~G~~v~~v 116 (378)
T TIGR01329 45 GNPTRTALESLLAKLDKADRAFAFSSGMAALDVITR-LL-NNGDEIIAGDDLYGGTDRLLTQVV------PRSGVVVVHV 116 (378)
T ss_pred CChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-Hh-CCCCEEEEcCCCchHHHHHHHHHH------HHcCcEEEEe
Confidence 467789999999999999888999999999888776 45 6999999987766443221 0111 2458888887
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C--hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--~~~~~ 254 (285)
+.. |++++++++++ ++++|++++|+|++ |.+.| +++|+++|+++|+++|+|+++. + ...+.
T Consensus 117 d~~-----d~~~le~~i~~-------~tklv~le~psnpt-g~v~d---l~~I~~la~~~g~~vivD~a~~~~~~~~~l~ 180 (378)
T TIGR01329 117 DTT-----DLDKVKAALGP-------KTKLVLLESPTNPL-QKIVD---IRKISEMAHAQNALVVVDNTMMSPLLCNPLE 180 (378)
T ss_pred CCC-----CHHHHHHhcCc-------CceEEEEECCCCCC-Ceeec---HHHHHHHHHHcCCEEEEECCCcccccCChhh
Confidence 752 89999999987 89999999999999 99999 9999999999999999999986 2 12334
Q ss_pred ccCCeEEEecccccCcc---eeEEeecCc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAGPE 280 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~~~ 280 (285)
.++|+++.|++|+++|+ ++|+++.++
T Consensus 181 ~g~Di~v~S~tK~l~G~~~~~~G~v~~~~ 209 (378)
T TIGR01329 181 LGADIVYHSATKFLAGHSDVMAGVLAVKG 209 (378)
T ss_pred cCCcEEEEecceeccCCccceeEEEEeCc
Confidence 58899999999999883 477776543
No 242
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.81 E-value=4.5e-19 Score=157.91 Aligned_cols=190 Identities=22% Similarity=0.230 Sum_probs=141.4
Q ss_pred CCCcHHHHHHHHh--cccCCCCccCChhHHHHHHHHHhHcCCC--------cEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413 77 SKPTMEMKNYMFN--CEVGDDVYLEDPTCKELQEKAAKLAGKE--------AAIFVPSGTMGNLIAIMTHCDRRDSEIIV 146 (285)
Q Consensus 77 ~~~~~~v~~a~~~--~~~~~~~y~~~~~~~~l~~~la~~~g~~--------~~~~~~~Gs~a~~~al~~~~~~~g~~vi~ 146 (285)
...+|.+..++.+ .......|...+...++++.++++++.. ..+++++|++++..++.++. ++|++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~g~~vl~ 88 (350)
T cd00609 10 FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL-NPGDEVLV 88 (350)
T ss_pred CCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC-CCCCEEEE
Confidence 4466677777654 2223345666677888999999887643 46899999999999999986 58999999
Q ss_pred cCCcceeeecccccccccccccccceeeeeeecCCCCCCCH--HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL--DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM 224 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~--~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~ 224 (285)
+.+.|....... ...+..++.++..+++..+. +.++..+.+ ++++|++++++|++ |.++|.
T Consensus 89 ~~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~v~i~~~~~~t-G~~~~~ 151 (350)
T cd00609 89 PDPTYPGYEAAA---------RLAGAEVVPVPLDEEGGFLLDLELLEAAKTP-------KTKLLYLNNPNNPT-GAVLSE 151 (350)
T ss_pred cCCCchhHHHHH---------HHCCCEEEEEecccccCCccCHHHHHhhcCc-------cceEEEEECCCCCC-CcccCH
Confidence 988887654422 23478888888766655544 566666555 78999999999999 899999
Q ss_pred HHHHHHHHHHHHcCCeEEEeCccCChh-----------hhcccCCeEEEecccccC--cceeEEeecCc-cccc
Q psy5413 225 QWLRELKARCQEHNIPVHMDGARLPLA-----------EVCASVDTVMFCLSKGLG--APVGSILAGPE-EFIQ 284 (285)
Q Consensus 225 ~~l~~i~~la~~~gi~li~Dea~~~~~-----------~~~~~~dv~~~s~sK~l~--~p~gg~~~~~~-~~i~ 284 (285)
+++++|+++|+++|+++|+|+++.... ....+.|+++.|++|+++ ++..|+++.++ ++++
T Consensus 152 ~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~ 225 (350)
T cd00609 152 EELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLE 225 (350)
T ss_pred HHHHHHHHHHHhCCeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHH
Confidence 999999999999999999999987211 111245677899999997 35567777766 5543
No 243
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.81 E-value=9.4e-19 Score=162.92 Aligned_cols=203 Identities=16% Similarity=0.108 Sum_probs=142.2
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhccc-------C------CCCccCChhHHHHHHHHHhHcC--------C--CcEEEcC
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEV-------G------DDVYLEDPTCKELQEKAAKLAG--------K--EAAIFVP 123 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------~------~~~y~~~~~~~~l~~~la~~~g--------~--~~~~~~~ 123 (285)
.+|.+....-..+.+.+.+.+.+... + ...|+...+..+|++.++++++ . +.+++++
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 35666543333444555555544321 1 1235555567889999998864 1 3458888
Q ss_pred ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhccccccc
Q psy5413 124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIH 201 (285)
Q Consensus 124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~ 201 (285)
|+++|++.++.+++ .+||.|+++.++|........ ...|++++.++.. +++.+|+++++++++... ..
T Consensus 127 Ga~~al~~l~~~l~-~pGD~Vlv~~P~Y~~~~~~~~--------~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~-~~ 196 (496)
T PLN02376 127 GATGANETIMFCLA-DPGDVFLIPSPYYAAFDRDLR--------WRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQ-ES 196 (496)
T ss_pred chHHHHHHHHHHhC-CCCCEEEECCCCccchHHHHH--------hhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHH-hc
Confidence 99999999999987 699999999988765433111 1248899999874 345789999987753211 01
Q ss_pred CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----------hhhccc-------CCe--EEE
Q psy5413 202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----------AEVCAS-------VDT--VMF 262 (285)
Q Consensus 202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----------~~~~~~-------~dv--~~~ 262 (285)
+.++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+ ..+... .+. ++.
T Consensus 197 ~~~~k~l~l~nP~NPT-G~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~ 275 (496)
T PLN02376 197 NKKVKGLILTNPSNPL-GTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVY 275 (496)
T ss_pred CCCeeEEEEcCCCCCC-CccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEE
Confidence 2378999999999999 99999999999999999999999999998721 112111 132 378
Q ss_pred ecccccCc--ceeEEeecCc
Q psy5413 263 CLSKGLGA--PVGSILAGPE 280 (285)
Q Consensus 263 s~sK~l~~--p~gg~~~~~~ 280 (285)
|+||.++. .+.|++++.+
T Consensus 276 S~SK~~glpGlRvG~li~~~ 295 (496)
T PLN02376 276 SLSKDMGLPGFRVGIVYSFN 295 (496)
T ss_pred eccccCCCCcceEEEEEECC
Confidence 99998864 6778887743
No 244
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.81 E-value=4.5e-19 Score=159.83 Aligned_cols=191 Identities=20% Similarity=0.184 Sum_probs=143.0
Q ss_pred cCCcCCCcHHHHHHHHhcccC---CC-Ccc-CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcccc---CCC
Q psy5413 73 SDTISKPTMEMKNYMFNCEVG---DD-VYL-EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDR---RDS 142 (285)
Q Consensus 73 ~~~~~~~~~~v~~a~~~~~~~---~~-~y~-~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~---~g~ 142 (285)
++..+.++|.+.+++.++... .. .|. ......++++.+++++|.+. .+++++|++++..+++++... +++
T Consensus 26 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~~~~~~ 105 (371)
T PRK13520 26 SSMCTEPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLAKAEKP 105 (371)
T ss_pred eeeecCchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhccCCCc
Confidence 333466889988888765542 11 121 22234789999999999754 588999999999999877532 467
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|++++..|.+..... ...|.+++.++.++++.+|+++|+++|++ ++++|++..++|++ |.+.
T Consensus 106 ~vl~~~~~h~s~~~~~---------~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-------~~~~vi~~~~~~~t-G~~~ 168 (371)
T PRK13520 106 NIVVPESAHFSFDKAA---------DMLGVELRRAPLDDDYRVDVKAVEDLIDD-------NTIGIVGIAGTTEL-GQVD 168 (371)
T ss_pred eEEecCcchHHHHHHH---------HHcCceEEEecCCCCCcCCHHHHHHHHhh-------CCEEEEEEcCCcCC-cccC
Confidence 8999888887654322 23478888888877778999999999987 67777777777888 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh----------h-hcccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA----------E-VCASVDTVMFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~----------~-~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
| +++|.++|+++|+++|+|++|+... . ...++|.+.++.+||+.+ |.|++++.+++++
T Consensus 169 ~---l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~ 239 (371)
T PRK13520 169 P---IPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYL 239 (371)
T ss_pred C---HHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHH
Confidence 9 9999999999999999999988221 0 124678888899998754 6777777776554
No 245
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=99.81 E-value=6.4e-19 Score=170.60 Aligned_cols=203 Identities=14% Similarity=0.114 Sum_probs=135.2
Q ss_pred CCcHHHHHHHHhcccC--CCCc--cCChhHHHHHHHHHhHcC---CCcEEEcCChHHHHHHHHHHccc-c---C------
Q psy5413 78 KPTMEMKNYMFNCEVG--DDVY--LEDPTCKELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMTHCD-R---R------ 140 (285)
Q Consensus 78 ~~~~~v~~a~~~~~~~--~~~y--~~~~~~~~l~~~la~~~g---~~~~~~~~~Gs~a~~~al~~~~~-~---~------ 140 (285)
+.+|++.+|+.+|+.. +..+ ..++...+|.++|++..+ .++++|++|||+|++.|+|++++ . .
T Consensus 382 h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~~~~G~~~~~ 461 (817)
T PLN02974 382 TLQPELARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFIVDHGFLENS 461 (817)
T ss_pred CCCHHHHHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3699999999988763 3222 246778899999999765 35789999999999999999843 1 1
Q ss_pred ---------CC-eEEe-cCCcceeeeccccccccccccccc-ce----eeeee--ec------------CCCC-------
Q psy5413 141 ---------DS-EIIV-GDCSHIMLWEQGGASQTSVYSQIG-RV----LMRGV--TN------------QKDG------- 183 (285)
Q Consensus 141 ---------g~-~vi~-~~~~h~~~~~~~~~~~~~~~~~~~-g~----~~~~~--~~------------~~~~------- 183 (285)
++ +||. ...||+.+..+..+...+.|...+ .. ....+ |. ...+
T Consensus 462 ~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~ 541 (817)
T PLN02974 462 GNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGE 541 (817)
T ss_pred ccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCcccccccccc
Confidence 22 2443 678899885543332112222111 00 00111 10 0000
Q ss_pred ---------------------CCCHHHHHHHhcccc-cccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413 184 ---------------------TFDLDEMEAKFSTAD-NIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIP 240 (285)
Q Consensus 184 ---------------------~~d~~~l~~~i~~~~-~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~ 240 (285)
...++.+++.|++.. ..+++++++|++|++ ++.+|..+.|++|+++|+++|++||++
T Consensus 542 ~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gil 621 (817)
T PLN02974 542 ETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIP 621 (817)
T ss_pred ccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence 001255666664310 123458999999995 888867778899999999999999999
Q ss_pred EEEeCccCCh-----hhhcccCCeE--EEecccccCc---ceeEEeecCc
Q psy5413 241 VHMDGARLPL-----AEVCASVDTV--MFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 241 li~Dea~~~~-----~~~~~~~dv~--~~s~sK~l~~---p~gg~~~~~~ 280 (285)
||+||+++++ .+..+..++. +.+++|+|++ |+++++++++
T Consensus 622 LI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~ 671 (817)
T PLN02974 622 VIFDEVFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEE 671 (817)
T ss_pred EEEeecccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHH
Confidence 9999998844 4455666666 7888899987 8888777643
No 246
>PRK06149 hypothetical protein; Provisional
Probab=99.81 E-value=7.7e-19 Score=175.09 Aligned_cols=217 Identities=16% Similarity=0.189 Sum_probs=143.6
Q ss_pred cCCeeeeeccCC--cCCCcHHHHHHHHhcccC--CC-CccCChhHHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHc
Q psy5413 64 VNIRTVDIRSDT--ISKPTMEMKNYMFNCEVG--DD-VYLEDPTCKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 64 ~~~~~~~~~~~~--~~~~~~~v~~a~~~~~~~--~~-~y~~~~~~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
.|++++||.++. .++.||+|.+|+.++... .. .| ..+...+++++|++++ +.+.++|++|||+|++.|++++
T Consensus 583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklA 661 (972)
T PRK06149 583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTNSRF-HYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLA 661 (972)
T ss_pred CCCEEEECCCCccccCCCCHHHHHHHHHHHHhccccccc-cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHH
Confidence 478899998763 456899999999887753 22 23 3566889999999997 4678899999999999999988
Q ss_pred cccCCCe-EE-ecCCcceeeeccccccc----cc-cccc-ccceeeeeeecCCC--C-CCC-----HHHHHHHhcccccc
Q psy5413 137 CDRRDSE-II-VGDCSHIMLWEQGGASQ----TS-VYSQ-IGRVLMRGVTNQKD--G-TFD-----LDEMEAKFSTADNI 200 (285)
Q Consensus 137 ~~~~g~~-vi-~~~~~h~~~~~~~~~~~----~~-~~~~-~~g~~~~~~~~~~~--~-~~d-----~~~l~~~i~~~~~~ 200 (285)
....|+. || +...||+.+.....++. .. .+.. ..+...+..|.... + ..+ .+++++.++.. ..
T Consensus 662 r~~tgr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 740 (972)
T PRK06149 662 WAASGRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEEL-DA 740 (972)
T ss_pred HHhcCCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHH-hh
Confidence 7555653 33 46788987643222210 00 0000 01122222221111 1 112 34555544321 12
Q ss_pred cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------hcccCCeE--EEecccccCc--
Q psy5413 201 HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------VCASVDTV--MFCLSKGLGA-- 270 (285)
Q Consensus 201 ~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------~~~~~dv~--~~s~sK~l~~-- 270 (285)
+++++++|++|++++..|..+.|++++++|+++|++||+++|+||+++++.. ..++.++. +.+++|.+++
T Consensus 741 ~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~ 820 (972)
T PRK06149 741 SGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGH 820 (972)
T ss_pred cCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCe
Confidence 3458999999999998877788899999999999999999999999874321 22334444 5688899987
Q ss_pred ceeEEeecCcccc
Q psy5413 271 PVGSILAGPEEFI 283 (285)
Q Consensus 271 p~gg~~~~~~~~i 283 (285)
|+|+++++ ++++
T Consensus 821 Pl~av~~~-~~i~ 832 (972)
T PRK06149 821 PLGAVITR-REIA 832 (972)
T ss_pred eeEEEEEc-HHHH
Confidence 88776654 4443
No 247
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=1.6e-19 Score=161.69 Aligned_cols=190 Identities=18% Similarity=0.152 Sum_probs=141.6
Q ss_pred eeeec-cCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-Ce
Q psy5413 68 TVDIR-SDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-SE 143 (285)
Q Consensus 68 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~~ 143 (285)
.++|. |+++.++++.+ .. .....|. ++...+|++.+++++|.+. +++++|+++++..++.+++ ++| +.
T Consensus 30 ~~~l~~Nenp~~~~~~~----~~--~~~~~Yp-~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~-~~g~~~ 101 (351)
T PRK01688 30 DVWLNANEYPTAVEFQL----TQ--QTLNRYP-ECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC-EPGKDA 101 (351)
T ss_pred ceEecCCCCCCCCChhh----cc--cccccCC-CCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-CCCCCE
Confidence 46776 45555555543 11 1234454 4557899999999998654 6888889999999999876 476 78
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
|+++.++|..... .. +..|.+++.++.++++.+|++++++++ + ++++|++++|+||| |.+++
T Consensus 102 vli~~P~y~~y~~---~~------~~~G~~~~~v~~~~~~~~d~~~l~~~~-~-------~~~lv~l~nPnNPT-G~~~~ 163 (351)
T PRK01688 102 ILYCPPTYGMYSV---SA------ETIGVEIRTVPTLDNWQLDLPAIADNL-D-------GVKVVYVCSPNNPT-GNLIN 163 (351)
T ss_pred EEEcCCCHHHHHH---HH------HHcCCEEEEeecCCCCCCCHHHHHHhc-c-------CCcEEEEeCCCCCC-CCCCC
Confidence 9988887754432 22 345889999988767789999999987 4 67999999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccCChh------hhc-ccCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARLPLA------EVC-ASVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~-~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++++|++.|++ +++||+||+|..+. .+. ....++ +.||||++|. .+.|++++++++++
T Consensus 164 ~~~l~~l~~~~~~-~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~i~ 233 (351)
T PRK01688 164 PQDLRTLLELTRG-KAIVVADEAYIEFCPQASLAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEVIN 233 (351)
T ss_pred HHHHHHHHHhCCC-CcEEEEECchhhcCCCCChHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHHHH
Confidence 9999999998876 68999999987221 222 233444 8999998874 66788888887754
No 248
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.80 E-value=5.5e-19 Score=158.60 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=140.5
Q ss_pred CCeeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 65 NIRTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 65 ~~~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
+.++++|..+ ++.++++.+++++.+.......|.. +...++++.++++++.+ .+++++|+++++..++.++ .+|
T Consensus 19 ~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l--~~g 95 (356)
T PRK08056 19 PDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-VEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGL--KPR 95 (356)
T ss_pred hhhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh--CCC
Confidence 3567888865 5556788999998876554445653 45899999999999764 4688888899998888874 367
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG 219 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG 219 (285)
+ +++..+.+..... .. +..|.+++.++..++ ..+| +++++.+.+ ++++|++++|+||| |
T Consensus 96 ~-viv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~~-------~~k~v~l~~p~NPT-G 156 (356)
T PRK08056 96 R-AMIVTPGFAEYRR---AL------QQVGCEIRRYSLREADGWQLT-DAILEALTP-------DLDCLFLCTPNNPT-G 156 (356)
T ss_pred C-EEEeCCCcHHHHH---HH------HHcCCeEEEEecccccCCCcc-HHHHHhccC-------CCCEEEEeCCcCCC-C
Confidence 6 4555554332222 22 345888888887433 3444 355566654 78999999999999 8
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhccc--CCeEEEecccccCc--ceeEEeec-Ccccc
Q psy5413 220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCAS--VDTVMFCLSKGLGA--PVGSILAG-PEEFI 283 (285)
Q Consensus 220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~~--~dv~~~s~sK~l~~--p~gg~~~~-~~~~i 283 (285)
.+++.+++++|+++|++||+++|+||+|..+. ..... ..+++.|+||+++. .+.|+++. +++++
T Consensus 157 ~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~ 232 (356)
T PRK08056 157 LLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAV 232 (356)
T ss_pred CCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence 89999999999999999999999999976221 11111 23558999999885 66777776 44543
No 249
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.80 E-value=8.5e-19 Score=156.34 Aligned_cols=176 Identities=15% Similarity=0.113 Sum_probs=133.5
Q ss_pred CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHHHccccCCCeEEec---CCccee
Q psy5413 79 PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG---DCSHIM 153 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~---~~~h~~ 153 (285)
.+|.+.++..+...... +..+.+.+|++.+++++|. +.+++++||++|+..++.+++ ++||+|++. .++|.+
T Consensus 34 ~~~~~~~~~~~~~~~~~--g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~-~~gd~Vli~~~d~p~~~s 110 (346)
T TIGR03576 34 GGFKIDEEDLELLETYV--GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALE-PPGRKVVHYLPEKPAHPS 110 (346)
T ss_pred CChhHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhC-CCCCEEEECCCCCCCchh
Confidence 68899988877664321 4567899999999999998 778999999999999999987 689998863 467766
Q ss_pred eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
......+. |.+++.. .++++++. . + ++++|++++ ++++ |.+++.+.|++|+++
T Consensus 111 ~~~~~~l~---------ga~~~~~-------~~l~~l~~-~-~-------~~~lIiitg-~s~~-G~v~~~~~L~~i~~l 163 (346)
T TIGR03576 111 IPRSCKLA---------GAEYFES-------DELSELKK-I-D-------GTSLVVITG-STMD-LKVVSEEDLKRVIKQ 163 (346)
T ss_pred HHHHHHHc---------CCEEecc-------CCHHHHhh-C-c-------CceEEEEEC-CCCC-CcccCHHHHHHHHHH
Confidence 54433333 5554322 25555432 1 2 567888866 5777 899999999999999
Q ss_pred HHHcCCeEEEeCccCC-hh---h----hcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 234 CQEHNIPVHMDGARLP-LA---E----VCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 234 a~~~gi~li~Dea~~~-~~---~----~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|++||++|++||+|.. .. . ...+.|+++.|+||+++|+++|++++++++++
T Consensus 164 a~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~~li~ 222 (346)
T TIGR03576 164 AKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVD 222 (346)
T ss_pred HHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCHHHHH
Confidence 9999999999999882 11 1 11246888999999998889999999988765
No 250
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.80 E-value=1.3e-18 Score=157.41 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=138.1
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHc
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~ 136 (285)
|++++||.++ ..++.+|.+.+++.++.... ..| .++...++++.+++++|.+.+++++||++|++.+++++
T Consensus 26 g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~ 104 (379)
T TIGR00707 26 GKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLA 104 (379)
T ss_pred CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHH
Confidence 5677888773 34556799999988766531 233 46779999999999999999999999999999999876
Q ss_pred cc--c----CCCeEEecC-CcceeeecccccccccccccccceeeeeeecCCCC----CCCHHHHHHHhcccccccCCce
Q psy5413 137 CD--R----RDSEIIVGD-CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG----TFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 137 ~~--~----~g~~vi~~~-~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
.. . ++++|++.+ .||.+............+.. ...+...+. ..|++++++.+++ ++
T Consensus 105 ~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~d~~~l~~~~~~-------~~ 171 (379)
T TIGR00707 105 RKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQK------GFEPLVPGFSYAPYNDIESLKKAIDD-------ET 171 (379)
T ss_pred HHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhc------cCCCCCCCceeeCCCCHHHHHHHhhh-------Ce
Confidence 31 1 257777654 55655433221110000000 001111111 1289999999976 78
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----h----c-ccCCeEEEecccccCc-ceeEE
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----V----C-ASVDTVMFCLSKGLGA-PVGSI 275 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~----~-~~~dv~~~s~sK~l~~-p~gg~ 275 (285)
++|+++++++++|....+.+++++|.++|++||+++|+||+|.++.. . . ...| +.++||++++ .+.|+
T Consensus 172 ~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d--~~t~sK~~~~G~riG~ 249 (379)
T TIGR00707 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPD--IITLAKGLGGGVPIGA 249 (379)
T ss_pred eEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCC--EEEEcccccCCcccEE
Confidence 99999988777633357899999999999999999999999873311 1 1 1234 3478999986 34566
Q ss_pred eecCccccc
Q psy5413 276 LAGPEEFIQ 284 (285)
Q Consensus 276 ~~~~~~~i~ 284 (285)
+++++++++
T Consensus 250 ~~~~~~~~~ 258 (379)
T TIGR00707 250 TLAKEEVAE 258 (379)
T ss_pred EEEcHHHHh
Confidence 777777654
No 251
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.80 E-value=1.9e-18 Score=158.23 Aligned_cols=191 Identities=23% Similarity=0.267 Sum_probs=141.5
Q ss_pred CCCcHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 77 SKPTMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
...++++.+++.+...... .|. ....+.++++.+++++|.+.+++++||+.|+..++.. + .+|++||+++.
T Consensus 91 s~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~-l-~~GdeVIvs~~ 168 (454)
T TIGR00474 91 APLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNT-L-AKGKEVIVSRG 168 (454)
T ss_pred CCCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHH-h-CCcCEEEECCC
Confidence 4457899999877655321 111 2344789999999999999999999999999988855 4 58999999876
Q ss_pred cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCC-Ce--eeCCHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC-GG--TVLPMQW 226 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~-gG--~~~~~~~ 226 (285)
.|........+. ......|++++.++.+. ..++++++++|++ +|++|++++++|++ -| .+.|
T Consensus 169 e~v~~ggs~~i~---~~~~~~G~~~~~v~~~~--~~~l~dle~aI~~-------~T~lv~~~h~sN~~~~G~~~~~d--- 233 (454)
T TIGR00474 169 ELVEIGGSFRIP---DVMEQSGAKLVEVGTTN--RTHLKDYEDAITE-------NTALLLKVHTSNYRIVGFTEEVS--- 233 (454)
T ss_pred hhhhhcchhhHH---HHHHHcCCEEEEeCCCC--CCCHHHHHHhcCc-------CCEEEEEEccCcccccCCCCCCC---
Confidence 542110000010 01134588888886532 3589999999987 89999999999884 13 5788
Q ss_pred HHHHHHHHHHcCCeEEEeCccCC---------------hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARLP---------------LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~~---------------~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++|+++||+||+++++|.+.+. ......++|++++|.+|+++||.+|++++++++++
T Consensus 234 l~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~ 306 (454)
T TIGR00474 234 IAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIE 306 (454)
T ss_pred HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHH
Confidence 99999999999999999986220 01234689999999999999999999999888764
No 252
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.80 E-value=4.9e-19 Score=159.33 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=126.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||++|+..++. ++ ++||+|++.++.|..+... .... ...|.++..+
T Consensus 50 ~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-ll-~~Gd~Vl~~~~~y~~t~~~~~~~~------~~~G~~v~~v 121 (366)
T PRK08247 50 GNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-LF-RSGDELIVSSDLYGGTYRLFEEHW------KKWNVRFVYV 121 (366)
T ss_pred CCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-Hh-CCCCEEEEecCCcCcHHHHHHHHh------hccCceEEEE
Confidence 578899999999999999999999999999998764 45 5899999887765543211 1111 2357777777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++. +. ..+.
T Consensus 122 d~-----~d~~~l~~~i~~-------~tklv~le~P~NP~-~~~~d---l~~I~~la~~~g~~lIvD~t~~~~~~~~p~~ 185 (366)
T PRK08247 122 NT-----ASLKAIEQAITP-------NTKAIFIETPTNPL-MQETD---IAAIAKIAKKHGLLLIVDNTFYTPVLQRPLE 185 (366)
T ss_pred CC-----CCHHHHHHhccc-------CceEEEEECCCCCC-CcHHH---HHHHHHHHHHcCCEEEEECCCccccccCchh
Confidence 64 389999999987 78999999999998 66666 9999999999999999999986 22 1223
Q ss_pred ccCCeEEEecccccCcc---eeEEeecC-cccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~i 283 (285)
.++|+++.|++|+++++ ++|+++.+ ++++
T Consensus 186 ~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~ 218 (366)
T PRK08247 186 EGADIVIHSATKYLGGHNDVLAGLVVAKGQELC 218 (366)
T ss_pred cCCcEEEeecceeccCCCceeeeEEecChHHHH
Confidence 57899999999999973 78888875 4543
No 253
>PRK04311 selenocysteine synthase; Provisional
Probab=99.80 E-value=1.8e-18 Score=158.76 Aligned_cols=191 Identities=23% Similarity=0.244 Sum_probs=141.4
Q ss_pred CCCcHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 77 SKPTMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
...++++.+++.+...+.. .|. ..+.+.++++.+++++|.+.+++++||+.|+..++.+ + .+|++||+++.
T Consensus 96 s~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~-l-~~GdeVIvs~~ 173 (464)
T PRK04311 96 ALLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAEDALVVNNNAAAVLLALNA-L-AAGKEVIVSRG 173 (464)
T ss_pred CCCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHH-h-CCCCEEEEcch
Confidence 4467889999877665321 111 1344679999999999999999999999999998866 4 58999999875
Q ss_pred cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC--CC-eeeCCHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY--CG-GTVLPMQW 226 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~--~g-G~~~~~~~ 226 (285)
.|..+.....+. ......|++++.++.+. ..++++++++|++ +|++|++++++|+ +| +...|
T Consensus 174 e~~~~ggs~~i~---~~~~~~G~~l~~v~~~~--~t~~~dle~aI~~-------~TklV~~vh~sN~~i~G~~~~~d--- 238 (464)
T PRK04311 174 ELVEIGGAFRIP---DVMRQAGARLVEVGTTN--RTHLRDYEQAINE-------NTALLLKVHTSNYRIEGFTKEVS--- 238 (464)
T ss_pred hhhhcCcchhhH---HHHHHCCcEEEEECCCC--CCCHHHHHHhcCc-------cCeEEEEEcCCCccccccCCcCC---
Confidence 443211000010 01134588888887532 3479999999987 8999999999987 32 45678
Q ss_pred HHHHHHHHHHcCCeEEEeCccCC------------h---hhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARLP------------L---AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~~------------~---~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++|+++||+||+++++|.+.+. . ..+..++|++++|.+|+++||.+|++++++++++
T Consensus 239 l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~ 311 (464)
T PRK04311 239 LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIA 311 (464)
T ss_pred HHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHH
Confidence 99999999999999999995321 1 1123689999999999999999999999988765
No 254
>PRK07505 hypothetical protein; Provisional
Probab=99.80 E-value=1.5e-18 Score=158.26 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=134.0
Q ss_pred CCeeeeeccCCcC--CCcHHHHHHHHhcccCC---CCc-----cCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTIS--KPTMEMKNYMFNCEVGD---DVY-----LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~--~~~~~v~~a~~~~~~~~---~~y-----~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.+.++. +.+|+|.+|+.+++... ... ...+...++++.++++++. ..+++++|++|++.+++
T Consensus 45 g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~ 123 (402)
T PRK07505 45 GHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILP 123 (402)
T ss_pred CceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHH
Confidence 6778898754433 68999999999877521 111 1245689999999999988 77888899999999998
Q ss_pred Hcccc--C-CCe-E-EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 135 THCDR--R-DSE-I-IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 135 ~~~~~--~-g~~-v-i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
++... + ++. + +....+|.+........ . .+..++.+|. .|++++++++++ ++++++
T Consensus 124 ~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~------~-~~~~v~~~~~-----~d~~~l~~~~~~-------~~~~~v 184 (402)
T PRK07505 124 LLASGHLTGGVPPHMVFDKNAHASLNILKGIC------A-DETEVETIDH-----NDLDALEDICKT-------NKTVAY 184 (402)
T ss_pred HHHhcccCCCCCCEEEEchhhhHhHHhhhhhh------h-cCCeEEEeCC-----CCHHHHHHHHhc-------CCCEEE
Confidence 75421 2 332 4 44567786542211111 1 1345566654 389999999876 457777
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-------Chhhh---cc--cCC--eEEEecccccCcceeEE
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-------PLAEV---CA--SVD--TVMFCLSKGLGAPVGSI 275 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-------~~~~~---~~--~~d--v~~~s~sK~l~~p~gg~ 275 (285)
+.+|+|++ |.+.+ +++|.++|++||++||+||+|+ +.... .. ..| +++.|++|.++++ ||+
T Consensus 185 l~~p~~~~-G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~-Gg~ 259 (402)
T PRK07505 185 VADGVYSM-GGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS-GGV 259 (402)
T ss_pred EEeccccc-CCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc-CeE
Confidence 78888899 78889 8999999999999999999984 11111 11 234 4478999999875 566
Q ss_pred ee-cCcccc
Q psy5413 276 LA-GPEEFI 283 (285)
Q Consensus 276 ~~-~~~~~i 283 (285)
++ ++++++
T Consensus 260 ~~~~~~~~~ 268 (402)
T PRK07505 260 IMLGDAEQI 268 (402)
T ss_pred EEeCCHHHH
Confidence 65 566554
No 255
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.80 E-value=2.1e-18 Score=157.77 Aligned_cols=159 Identities=18% Similarity=0.151 Sum_probs=129.4
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++|+.++++.|.+.++.++||++|+.+++..++ ++||+||+++..|..+... .... ...|.+++.+
T Consensus 67 ~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~ll-~~Gd~VI~~~~~y~~t~~~~~~~l------~~~Gi~v~~v 139 (437)
T PRK05613 67 TNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNLA-GAGDHIVTSPRLYGGTETLFLVTL------NRLGIEVTFV 139 (437)
T ss_pred cChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhc-CCCCEEEECCCccHHHHHHHHHHH------HhcCeEEEEE
Confidence 568899999999999999889999999999999998876 6899999887777654211 0111 2458888877
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC---hhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP---LAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~---~~~~~ 254 (285)
+. + .|+++++++|++ +|++|+++.+.|++ |.+.| +++|+++|+++|+++|+|.+++. .....
T Consensus 140 d~-~---~d~e~l~~~l~~-------~tk~V~~e~~~Np~-~~v~d---i~~I~~la~~~gi~livD~t~a~g~~~~p~~ 204 (437)
T PRK05613 140 EN-P---DDPESWQAAVQP-------NTKAFFGETFANPQ-ADVLD---IPAVAEVAHRNQVPLIVDNTIATAALVRPLE 204 (437)
T ss_pred CC-C---CCHHHHHHhCCc-------cCeEEEEECCCCCC-CcccC---HHHHHHHHHHcCCeEEEECCCccccccChHH
Confidence 62 2 288999999987 78999999999999 79999 99999999999999999999872 22334
Q ss_pred ccCCeEEEecccccCc---ceeEEeecC
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGP 279 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~ 279 (285)
.++|+++.|++|++++ -+||+++.+
T Consensus 205 ~GaDivv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 205 LGADVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred hCCCEEEeeccceecCCCcceeEEEEec
Confidence 5899999999999998 357877754
No 256
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.80 E-value=1.6e-18 Score=156.68 Aligned_cols=221 Identities=19% Similarity=0.147 Sum_probs=141.4
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCC----cCCCcHHHHHHHHhcccCCCCccCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDT----ISKPTMEMKNYMFNCEVGDDVYLEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~a~~~~~~~~~~y~~~~~ 102 (285)
|..+.++.+.++|+.. |++++||.++. .++ +|++.+++.+++.....+. +..
T Consensus 12 ~~~~~~~~G~~l~d~d----------------------g~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~-~~~ 67 (375)
T PRK04260 12 AIEFVKAEGNYLIDTD----------------------GKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSP-NLY 67 (375)
T ss_pred CceEEEeeeCEEEeCC----------------------CCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCccc-Ccc
Confidence 4556667777777743 45667776542 355 8999999998775322121 223
Q ss_pred HHHHHHHHHhHc-CC-C-cEEEcCChHHHHHHHHHHccccCC-CeEEe-cCCcceeeecccccccccccccccceeeeee
Q psy5413 103 CKELQEKAAKLA-GK-E-AAIFVPSGTMGNLIAIMTHCDRRD-SEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 103 ~~~l~~~la~~~-g~-~-~~~~~~~Gs~a~~~al~~~~~~~g-~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (285)
..++++.+++.+ +. + .++|++||++|++.|++++....+ ++|++ ...+|+++......+....+...++..+..+
T Consensus 68 ~~~~~~~la~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (375)
T PRK04260 68 LNSLQEEVAQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHF 147 (375)
T ss_pred CCHHHHHHHHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCe
Confidence 455666666654 22 2 358999999999999999753333 34554 5788987754332221111112222222222
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----h
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----E 252 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~ 252 (285)
+..+ ..|++++++.+.+ ++++|++|+++|++|....+.++|+++.++|+++|+++|+||+|+++. .
T Consensus 148 ~~~~--~~dl~~l~~~l~~-------~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~ 218 (375)
T PRK04260 148 SYAI--FNDLNSVKALVNK-------NTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY 218 (375)
T ss_pred EEeC--CCCHHHHHHhcCC-------CeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh
Confidence 2111 2489999998865 789999999999984445667999999999999999999999987321 1
Q ss_pred hc----ccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413 253 VC----ASVDTVMFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 253 ~~----~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
.. ...| +.++||.+++ |.|++ +++++++
T Consensus 219 ~~~~~~~~pd--i~t~sK~l~~G~~ig~~-~~~~~~~ 252 (375)
T PRK04260 219 AFEHYGIEPD--IFTLAKGLANGVPVGAM-LAKSSLG 252 (375)
T ss_pred hhHhhCCCCC--EEEecccccCCcceEEE-EEcHHHH
Confidence 11 1234 4588999985 55554 4455544
No 257
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.80 E-value=1.1e-18 Score=158.80 Aligned_cols=197 Identities=16% Similarity=0.092 Sum_probs=143.7
Q ss_pred eeeeeccCCc---CC--C-cHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcC--------CCcE--EEcCChHHH
Q psy5413 67 RTVDIRSDTI---SK--P-TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAG--------KEAA--IFVPSGTMG 128 (285)
Q Consensus 67 ~~~~~~~~~~---~~--~-~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g--------~~~~--~~~~~Gs~a 128 (285)
.+++|..+.+ .. + .+.+.+++.+.... ...|++..+..+|++.+++++. .+.+ ++++|+++|
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 4578877743 21 2 36788887776542 2358877788999999999852 1233 788888999
Q ss_pred HHHHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCce
Q psy5413 129 NLIAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 129 ~~~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
+..+++++. ..+||+|+++++++....... ...|.+++.++. .+++.+|+++++++++. +..++
T Consensus 107 l~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~---------~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~----~~~~~ 173 (396)
T PRK09257 107 LRVGADFLKRAFPDAKVWVSDPTWPNHRAIF---------EAAGLEVKTYPYYDAATKGLDFDAMLADLSQ----APAGD 173 (396)
T ss_pred HHHHHHHHHHhCCCCeEEECCCCcccHHHHH---------HHcCCcEEEEeccccccCccCHHHHHHHHHh----CCCCC
Confidence 999987653 258999999998875543322 345889998886 23467899999999864 12245
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----------hcccC-CeE-EEecccccCc--
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----------VCASV-DTV-MFCLSKGLGA-- 270 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----------~~~~~-dv~-~~s~sK~l~~-- 270 (285)
+++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.. +.... .++ +.|+||.++.
T Consensus 174 ~~~i~~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~G 252 (396)
T PRK09257 174 VVLLHGCCHNPT-GADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYG 252 (396)
T ss_pred EEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCcccc
Confidence 677778899999 9999999999999999999999999999873211 11112 344 8999998874
Q ss_pred ceeEEee
Q psy5413 271 PVGSILA 277 (285)
Q Consensus 271 p~gg~~~ 277 (285)
.+.|+++
T Consensus 253 lRiG~~~ 259 (396)
T PRK09257 253 ERVGALS 259 (396)
T ss_pred ccceeEE
Confidence 6777765
No 258
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.80 E-value=2.5e-18 Score=137.22 Aligned_cols=158 Identities=26% Similarity=0.317 Sum_probs=121.0
Q ss_pred HHHHHHHHHhHc--CCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC
Q psy5413 103 CKELQEKAAKLA--GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180 (285)
Q Consensus 103 ~~~l~~~la~~~--g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (285)
..++++.+++++ +.+.++++++|++|+..+++++. +++++|++.++.|..... ... ...|.++..++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-~~~~~v~~~~~~~~~~~~--~~~------~~~g~~~~~v~~~ 72 (170)
T cd01494 2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-GPGDEVIVDANGHGSRYW--VAA------ELAGAKPVPVPVD 72 (170)
T ss_pred HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC-CCCCEEEEeecccceehh--hHH------HhcCCEEEEeccC
Confidence 468999999999 77888999999999999999987 478888888877765541 122 2447788888765
Q ss_pred CCCCCC--HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-------h
Q psy5413 181 KDGTFD--LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-------A 251 (285)
Q Consensus 181 ~~~~~d--~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-------~ 251 (285)
.+...+ .+.+++... ..++++++++++++++ |...| +++|.++|+++|+++|+|+++... .
T Consensus 73 ~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~-g~~~~---~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~ 142 (170)
T cd01494 73 DAGYGGLDVAILEELKA------KPNVALIVITPNTTSG-GVLVP---LKEIRKIAKEYGILLLVDAASAGGASPAPGVL 142 (170)
T ss_pred CCCccchhhhhhhhccc------cCceEEEEEecCcCCC-CeEcC---HHHHHHHHHHcCCEEEEecccccccccccccc
Confidence 443322 224444332 2388999999999998 88889 799999999999999999998811 1
Q ss_pred hhcccCCeEEEecccccCcceeEEeecC
Q psy5413 252 EVCASVDTVMFCLSKGLGAPVGSILAGP 279 (285)
Q Consensus 252 ~~~~~~dv~~~s~sK~l~~p~gg~~~~~ 279 (285)
....++|+++.|++|+++++.+|+++.+
T Consensus 143 ~~~~~~d~~~~s~~K~~~~~~~G~l~~~ 170 (170)
T cd01494 143 IPEGGADVVTFSLHKNLGGEGGGVVIVK 170 (170)
T ss_pred cccccCCEEEEEcccccCCCceEEEEeC
Confidence 2235789999999999999888888653
No 259
>PLN02590 probable tyrosine decarboxylase
Probab=99.80 E-value=1.6e-18 Score=161.20 Aligned_cols=214 Identities=16% Similarity=0.128 Sum_probs=149.5
Q ss_pred CCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhH----cCCC
Q psy5413 44 NLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKL----AGKE 117 (285)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~----~g~~ 117 (285)
....+++.+|.+|.+..+... ....+.++..+.....+. ..|...|...++|+.+.++ +|.+
T Consensus 119 ~~i~p~~~~~~hP~f~a~~~~------------~~~~~~~lgd~l~sa~n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp 186 (539)
T PLN02590 119 KKIMPGITHWQSPSYFAYYAS------------STSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWLAKLLQLP 186 (539)
T ss_pred HHHhccCCcCCCCCeeEeccC------------CCcHHHHHHHHHHHhcccccCCcccCchhHHHHHHHHHHHHHHhCCC
Confidence 345677888988865555443 233556666665555543 3455678888888777665 4554
Q ss_pred c---------EEEcCChHHHHHHHHHHccccC----C-----C-eEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 118 A---------AIFVPSGTMGNLIAIMTHCDRR----D-----S-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 118 ~---------~~~~~~Gs~a~~~al~~~~~~~----g-----~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
. .+++++||+|+..++.++..+. | + .+++++.+|.++.++..+. ......++.+|
T Consensus 187 ~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il------Glg~~~vr~Vp 260 (539)
T PLN02590 187 DHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG------GIHEENIRLLK 260 (539)
T ss_pred cccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc------CCCcccEEEEe
Confidence 2 5899999999999998876421 1 1 3566899999988766655 22233577777
Q ss_pred cC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----
Q psy5413 179 NQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE---- 252 (285)
Q Consensus 179 ~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~---- 252 (285)
.+ +++.+|+++|+++|+++.+. +..+.+|+.+-.+-.+ |.+.| |++|+++|++||+|+|+|+|+++...
T Consensus 261 ~d~~~~~~md~~~L~~~I~~d~~~-g~~P~~VvaTaGTT~t-GaiDp---l~~Ia~i~~~~g~WlHVDaA~GG~al~~~~ 335 (539)
T PLN02590 261 TDSSTNYGMPPESLEEAISHDLAK-GFIPFFICATVGTTSS-AAVDP---LVPLGNIAKKYGIWLHVDAAYAGNACICPE 335 (539)
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhc-CCCcEEEEEEeCCCCC-cccCC---HHHHHHHHHHhCCeEEEecchhhhhhcChh
Confidence 75 35689999999999874333 2345555555544445 99999 99999999999999999999983221
Q ss_pred ------hcccCCeEEEecccccCccee--EEeecCc
Q psy5413 253 ------VCASVDTVMFCLSKGLGAPVG--SILAGPE 280 (285)
Q Consensus 253 ------~~~~~dv~~~s~sK~l~~p~g--g~~~~~~ 280 (285)
-.+.+|.+++++|||+..|.+ .+++.++
T Consensus 336 ~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~ 371 (539)
T PLN02590 336 YRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDR 371 (539)
T ss_pred hHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCH
Confidence 125689999999999988544 4455544
No 260
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.80 E-value=1.1e-18 Score=157.63 Aligned_cols=160 Identities=17% Similarity=0.163 Sum_probs=126.8
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+|++.++++.|.+.+++++||+.|+.+++. ++ ++|++|+++++.|..+.... ... ...|.++..+
T Consensus 48 ~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l-~pGd~Vi~~~~~y~~t~~~~~~~~------~~~gi~v~~v 119 (380)
T PRK06176 48 GNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LF-QSGDHVLLGDDVYGGTFRLFDKVL------VKNGLSCTII 119 (380)
T ss_pred CChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-Hc-CCCCEEEEcCCChhHHHHHHHHHH------HhcCeEEEEc
Confidence 467899999999999999999999999999987664 45 68999999877654332111 111 2347777666
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+. .|++++++++++ ++++|++++|+||+ |.+.| +++|+++|++||+++|+|+++... ..+.
T Consensus 120 d~-----~d~e~l~~ai~~-------~t~lV~lesP~Npt-g~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~~p~~ 183 (380)
T PRK06176 120 DT-----SDLSQIKKAIKP-------NTKALYLETPSNPL-LKITD---LAQCASVAKDHGLLTIVDNTFATPYYQNPLL 183 (380)
T ss_pred CC-----CCHHHHHHhcCc-------CceEEEEECCCCCC-ceecC---HHHHHHHHHHcCCEEEEECCccccccCCccc
Confidence 54 389999999987 79999999999999 89999 999999999999999999998732 2234
Q ss_pred ccCCeEEEecccccCcc---eeEEeecC-ccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAGP-EEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~~-~~~ 282 (285)
.++|+++.|++|+++++ .||+++.+ +++
T Consensus 184 ~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~ 215 (380)
T PRK06176 184 LGADIVVHSGTKYLGGHSDVVAGLVTTNNEAL 215 (380)
T ss_pred cCCCEEEecCceeccCCccceeeEEEecHHHH
Confidence 68899999999999883 57877664 444
No 261
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.80 E-value=7.5e-19 Score=159.27 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=127.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++++.+++++|.+..+.+++|+.|+..++. ++ ++||+|+++++.|..+... .... ...|.+++.+
T Consensus 52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l-~~Gd~Vlv~~~~y~~~~~~~~~~~------~~~G~~v~~v 123 (390)
T PRK08064 52 GNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LL-SKGDHVLISEDVYGGTYRMITEVL------SRFGIEHTFV 123 (390)
T ss_pred CChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-Hh-CCCCEEEEccCccchHHHHHHHHH------HHcCCEEEEE
Confidence 568899999999999999888999999999998886 45 5899999988766543321 1111 2458888877
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~ 254 (285)
+.. |++++++++++ ++++|++++|+||+ |.+.| +++|+++|+++|+++++|+++.... ...
T Consensus 124 ~~~-----d~~~l~~~l~~-------~tklV~l~~p~Npt-G~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~~~~~ 187 (390)
T PRK08064 124 DMT-----NLEEVAQNIKP-------NTKLFYVETPSNPL-LKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQKPLD 187 (390)
T ss_pred CCC-----CHHHHHHhcCC-------CceEEEEECCCCCC-cEecc---HHHHHHHHHHcCCEEEEECCCCcccccCchh
Confidence 752 78999999987 78999999999999 89999 9999999999999999999987321 233
Q ss_pred ccCCeEEEecccccCcc---eeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGAP---VGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~p---~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++|+ ++|+++. +++++
T Consensus 188 ~g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~ 220 (390)
T PRK08064 188 LGADVVLHSATKFLAGHSDVLAGLAVVKDEELA 220 (390)
T ss_pred hCCcEEEeecceeccCCccceeEEEEeCCHHHH
Confidence 47899999999999873 4565554 45554
No 262
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.80 E-value=8.8e-19 Score=159.86 Aligned_cols=202 Identities=15% Similarity=0.061 Sum_probs=142.8
Q ss_pred CeeeeeccCCcC-C-C----cHHHHHHHHhccc-C-CCCccCChhHHHHHHHHHhHcCC--------CcEE--EcCChHH
Q psy5413 66 IRTVDIRSDTIS-K-P----TMEMKNYMFNCEV-G-DDVYLEDPTCKELQEKAAKLAGK--------EAAI--FVPSGTM 127 (285)
Q Consensus 66 ~~~~~~~~~~~~-~-~----~~~v~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g~--------~~~~--~~~~Gs~ 127 (285)
+..++|+.+.+. . + .+.+.+++.+... + ...|++..+..+||+.+++++.. +.++ .+.+|++
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~ 108 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTG 108 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcch
Confidence 355788777642 2 2 2344455433332 2 35688778899999999998621 1233 3778888
Q ss_pred HHHHHHH---HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccC
Q psy5413 128 GNLIAIM---THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHC 202 (285)
Q Consensus 128 a~~~al~---~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~ 202 (285)
|+..++. +++ .+||+|++++++|....... ...|.+++.++.. +++.+|++.+++++++. .
T Consensus 109 al~~~~~~l~~~~-~~Gd~Vlv~~P~y~~~~~~~---------~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~----~ 174 (404)
T PTZ00376 109 ALRLGFEFLKRFL-PAGTTVYVSNPTWPNHVNIF---------KSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA----P 174 (404)
T ss_pred HHHHHHHHHHHhc-CCCCEEEEcCCCchhHHHHH---------HHcCCceeeccccCcccCCcCHHHHHHHHHhC----C
Confidence 8887765 444 68999999998876554422 3448899988873 34678999999998641 1
Q ss_pred CceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------------hhcccC-CeE-EEeccccc
Q psy5413 203 ASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------------EVCASV-DTV-MFCLSKGL 268 (285)
Q Consensus 203 ~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------------~~~~~~-dv~-~~s~sK~l 268 (285)
.+++++++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+.... .++ +.|+||.+
T Consensus 175 ~~~~~~~~~~p~NPT-G~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~ 253 (404)
T PTZ00376 175 NGSVVLLHACAHNPT-GVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM 253 (404)
T ss_pred CCCEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc
Confidence 246788889999999 999999999999999999999999999986221 111222 344 89999998
Q ss_pred Cc--ceeEEe---ecCccc
Q psy5413 269 GA--PVGSIL---AGPEEF 282 (285)
Q Consensus 269 ~~--p~gg~~---~~~~~~ 282 (285)
+. .+.|++ ++++++
T Consensus 254 ~~~GlRvG~~~~~~~~~~~ 272 (404)
T PTZ00376 254 GLYGERIGALHIVCANKEE 272 (404)
T ss_pred cccccccceEEEEeCCHHH
Confidence 84 677776 566653
No 263
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.80 E-value=3.3e-18 Score=153.74 Aligned_cols=164 Identities=23% Similarity=0.223 Sum_probs=126.0
Q ss_pred CCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-ccccccccccc
Q psy5413 94 DDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIG 170 (285)
Q Consensus 94 ~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~ 170 (285)
...|+ .+|....|++.|+++.|.+.++.++||..|+..++.+++ ++||+|++.+..|+.+..... .. ..+
T Consensus 46 ~~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll-~~Gd~iv~~~~~Y~~t~~~~~~~l------~~~ 118 (386)
T PF01053_consen 46 GYIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALL-KPGDHIVASDDLYGGTYRLLEELL------PRF 118 (386)
T ss_dssp SCSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS--TTBEEEEESSSSHHHHHHHHHCH------HHT
T ss_pred CcceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhc-ccCCceEecCCccCcchhhhhhhh------ccc
Confidence 34554 678899999999999999999999999999999999887 689999887665544433111 11 346
Q ss_pred ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC-CeEEEeCccCC
Q psy5413 171 RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-IPVHMDGARLP 249 (285)
Q Consensus 171 g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g-i~li~Dea~~~ 249 (285)
|+++..+.. .|++++++++++ ++++|++|.|.||+ ..+.| |++|+++||++| +++++|...++
T Consensus 119 gv~v~~~d~-----~d~~~l~~~l~~-------~t~~v~~EspsNP~-l~v~D---l~~i~~~a~~~g~~~~vVDnT~at 182 (386)
T PF01053_consen 119 GVEVTFVDP-----TDLEALEAALRP-------NTKLVFLESPSNPT-LEVPD---LEAIAKLAKEHGDILVVVDNTFAT 182 (386)
T ss_dssp TSEEEEEST-----TSHHHHHHHHCT-------TEEEEEEESSBTTT-TB------HHHHHHHHHHTTT-EEEEECTTTH
T ss_pred CcEEEEeCc-----hhHHHHHhhccc-------cceEEEEEcCCCcc-ccccc---HHHHHHHHHHhCCceEEeeccccc
Confidence 888777654 389999999998 89999999999999 99999 999999999998 99999999873
Q ss_pred ---hhhhcccCCeEEEecccccCc---ceeEEeecCc
Q psy5413 250 ---LAEVCASVDTVMFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 250 ---~~~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~ 280 (285)
...+..++|+++.|++|.++| -+||+++.+.
T Consensus 183 p~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~ 219 (386)
T PF01053_consen 183 PYNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNG 219 (386)
T ss_dssp TTTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESS
T ss_pred eeeeccCcCCceEEEeeccccccCCcceeeEEEEECc
Confidence 234556899999999999998 5677777543
No 264
>PRK07049 methionine gamma-lyase; Validated
Probab=99.80 E-value=9.8e-19 Score=160.02 Aligned_cols=172 Identities=16% Similarity=0.167 Sum_probs=129.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....|++.|+++.|.+.+++++||++|+..++.+++ ++||+|+++++.|..+.... ... ...|++++.+
T Consensus 81 ~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al~-~~Gd~Vv~~~p~Y~~~~~~~~~~l------~~~Gi~~v~~ 153 (427)
T PRK07049 81 NHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAFV-RPGDVILHSQPLYGGTETLLAKTF------RNFGVGAVGF 153 (427)
T ss_pred CCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh-CCCCEEEEcCCCcccHHHHHHHHH------HhcCcEEEEE
Confidence 467789999999999999999999999999999998877 69999999887765443221 111 2357776666
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH---cCCeEEEeCccCChh---
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE---HNIPVHMDGARLPLA--- 251 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~---~gi~li~Dea~~~~~--- 251 (285)
+. ..|++++++++.+... ..++++|++++|+||+ |.+++.+.+.+|++.|++ +++++++||++.+..
T Consensus 154 ~~----~~d~~~l~~~l~~~~~--~~~tklv~lesP~NPt-g~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~ 226 (427)
T PRK07049 154 AD----GLSEAAIGAAAEAAAA--KGRVSLILIETPANPT-NSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK 226 (427)
T ss_pred eC----CCCHHHHHHHHHhhcc--CCCceEEEEECCCCCC-CcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC
Confidence 53 2477888877753110 1278999999999999 999996666666665443 799999999976321
Q ss_pred hhcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 252 EVCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 252 ~~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
.+..+.|+++.|+||+++| .++|++++++++++
T Consensus 227 pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~ 262 (427)
T PRK07049 227 PLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIR 262 (427)
T ss_pred ccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHH
Confidence 2234679999999999985 68999998887654
No 265
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.80 E-value=7.8e-19 Score=157.55 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=121.9
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|...+|++.++++.|.+.++.++||++|+..++. ++ ++||+||++...+.......... . ...+.. +
T Consensus 52 ~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~l-~~GD~VI~~~~~yg~~~~~~~~~----~-~~~~~~---~- 120 (364)
T PRK07269 52 KNPTRAKLEETLAAIESADYALATSSGMSAIVLAFS-VF-PVGSKVVAVRDLYGGSFRWFNQQ----E-KEGRFH---F- 120 (364)
T ss_pred CCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-Hh-CCCCEEEEecCCcCchHHHHHHH----H-hcCcEE---E-
Confidence 578899999999999999999999999999999995 45 69999998766543221100000 0 001111 1
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~~ 255 (285)
.+..|+++++++|++ +|++|++++|+||+ |.+.+ +++|+++|+++|+++++|+++... ..+..
T Consensus 121 ---~~~~d~~~l~~~i~~-------~TklV~lesP~NPt-g~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~~pl~~ 186 (364)
T PRK07269 121 ---TYANTEEELIAAIEE-------DTDIVYIETPTNPL-MVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQRPIEL 186 (364)
T ss_pred ---EecCCHHHHHHhcCc-------CceEEEEECCCCCC-CeeeC---HHHHHHHHHHcCCEEEEECCCcccccCCchhh
Confidence 123489999999987 89999999999999 89998 999999999999999999997622 23446
Q ss_pred cCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAG-PEEFI 283 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i 283 (285)
++|+++.|++|++++ ..||++++ ++++.
T Consensus 187 gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~ 218 (364)
T PRK07269 187 GADIVLHSATKYLSGHNDVLAGVVVTNDLELY 218 (364)
T ss_pred CCcEEEecCceeccCCCcccceEEEeCcHHHH
Confidence 899999999999987 35777665 45543
No 266
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.80 E-value=1.4e-18 Score=158.78 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=137.1
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc------CC--CcEEEcCChHHHHH
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA------GK--EAAIFVPSGTMGNL 130 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~------g~--~~~~~~~~Gs~a~~ 130 (285)
..+++|..+.+.. +++.+.+++.+.... ...|++.+...+|++.+++++ +. +.+++++|+.+++.
T Consensus 34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~ 113 (409)
T PRK07590 34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTG 113 (409)
T ss_pred CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHH
Confidence 4578888777665 456788887765442 246766777889999999975 22 34578888888887
Q ss_pred HHHHHccccCCCeEEecCCcceeeeccccccccccccccccee-----------eeeeecCCCCCCCHHHHHHHhccccc
Q psy5413 131 IAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL-----------MRGVTNQKDGTFDLDEMEAKFSTADN 199 (285)
Q Consensus 131 ~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~-----------~~~~~~~~~~~~d~~~l~~~i~~~~~ 199 (285)
..+ .++ .+||+|++.++++........ ..|.+ ++.++.++++...++ ++ ++
T Consensus 114 ~l~-~~~-~~gd~V~v~~P~Y~~~~~~~~---------~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~---~~--- 175 (409)
T PRK07590 114 NIL-DIF-GPDNTIAVTDPVYPVYVDTNV---------MAGRTGEANEDGRYSGIVYLPCTAENNFVPE-LP---EE--- 175 (409)
T ss_pred HHH-Hhc-CCCCEEEEeCCCCcchHHHHH---------HcCCcccccccccccceeEeecccccCCccc-Cc---cc---
Confidence 754 445 589999998888755433222 22443 677776433212111 11 12
Q ss_pred ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--cc-CC-eE-EEecccc
Q psy5413 200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--AS-VD-TV-MFCLSKG 267 (285)
Q Consensus 200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~~-~d-v~-~~s~sK~ 267 (285)
++++|++++|+||| |.+++.+++++|+++|++||++||+||+|..+. .+. .. .+ ++ +.|+||.
T Consensus 176 ----~~k~i~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 250 (409)
T PRK07590 176 ----KVDIIYLCFPNNPT-GTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKT 250 (409)
T ss_pred ----CceEEEEeCCCCCc-CCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccc
Confidence 78999999999999 999999999999999999999999999987221 111 11 12 34 8999998
Q ss_pred cC--cceeEEeecCccccc
Q psy5413 268 LG--APVGSILAGPEEFIQ 284 (285)
Q Consensus 268 l~--~p~gg~~~~~~~~i~ 284 (285)
++ |.+.|++++++++++
T Consensus 251 ~~~pGlRiG~~i~~~~li~ 269 (409)
T PRK07590 251 AGFTGTRCAYTVVPKELKG 269 (409)
T ss_pred cCCcCceeEEEEcCHHHhh
Confidence 85 378889988887764
No 267
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=99.79 E-value=2.4e-18 Score=157.61 Aligned_cols=213 Identities=12% Similarity=0.170 Sum_probs=138.2
Q ss_pred CCeeeeeccC----CcCCCcHHHHHHHHhcccCCC--C--ccCChhHHHHHHHHHhHcCC--CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSD----TISKPTMEMKNYMFNCEVGDD--V--YLEDPTCKELQEKAAKLAGK--EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~----~~~~~~~~v~~a~~~~~~~~~--~--y~~~~~~~~l~~~la~~~g~--~~~~~~~~Gs~a~~~al~ 134 (285)
|++++||.++ +.++.+|++.+++.+++.... . +..++...++.+.+++..+. +.++|+++||+|++.|++
T Consensus 44 G~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Alk 123 (427)
T TIGR00508 44 GRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALK 123 (427)
T ss_pred CCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHH
Confidence 6778888665 567799999999998776311 1 12456688899999998743 578999999999999999
Q ss_pred Hcccc------CCC-eEE-ecCCcceeeecccccccc-cccccccc-----eeeeeeecCCC----CCCCHHHHHHHhcc
Q psy5413 135 THCDR------RDS-EII-VGDCSHIMLWEQGGASQT-SVYSQIGR-----VLMRGVTNQKD----GTFDLDEMEAKFST 196 (285)
Q Consensus 135 ~~~~~------~g~-~vi-~~~~~h~~~~~~~~~~~~-~~~~~~~g-----~~~~~~~~~~~----~~~d~~~l~~~i~~ 196 (285)
++... +++ +|| ....||+.+.....+... ..+...++ ...+..|.... ...|++++++.+..
T Consensus 124 lAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~ 203 (427)
T TIGR00508 124 MALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMEL 203 (427)
T ss_pred HHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHh
Confidence 98743 233 344 467889876443333210 11111111 11111121100 11257788888865
Q ss_pred cccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeE--EEeccccc
Q psy5413 197 ADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTV--MFCLSKGL 268 (285)
Q Consensus 197 ~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~--~~s~sK~l 268 (285)
+.+++++|++|+. ++.+|....+.+++++|+++|++||+++|+||+++++.. ..+..++. +.+++|.+
T Consensus 204 ----~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l 279 (427)
T TIGR00508 204 ----HSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKAL 279 (427)
T ss_pred ----cCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhh
Confidence 3347999999996 777655567899999999999999999999999874311 22222322 44578998
Q ss_pred Cc---ceeEEeecCccc
Q psy5413 269 GA---PVGSILAGPEEF 282 (285)
Q Consensus 269 ~~---p~gg~~~~~~~~ 282 (285)
++ |.++ ++.++++
T Consensus 280 ~gG~~p~~a-~~~~~~~ 295 (427)
T TIGR00508 280 TGGYMTLSA-TVTTDKV 295 (427)
T ss_pred hcCcccceE-EEEcHHH
Confidence 76 4554 4444443
No 268
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.79 E-value=1e-18 Score=160.42 Aligned_cols=220 Identities=13% Similarity=0.066 Sum_probs=134.7
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhc--ccC--C-CCccCCh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNC--EVG--D-DVYLEDP 101 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~--~~~--~-~~y~~~~ 101 (285)
|..+.++.+.++|+..++.+++..+.|+.. +.++.||++.+|+.++ ... + ..+ .++
T Consensus 41 p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~------------------~lGh~~p~i~~Ai~~q~~~~~l~~~~~~-~~~ 101 (464)
T TIGR00699 41 LADYEKSRGNYLVDVDGNRLLDLYSQISSI------------------PIGYNNPALLKAAQSPEMATTLINRPAL-GNF 101 (464)
T ss_pred ceEEEecccCEEEeCCCCEEEEccCCHhhh------------------cCCCCCHHHHHHHHHHHHHHhhcccccC-CcH
Confidence 444555566666655444444443333331 4477999999999974 222 1 123 344
Q ss_pred hHHHHHHHHHh----Hc--CCCcEEEcCChHHHHHHHHHHcccc-------------------------CC--C-eEEe-
Q psy5413 102 TCKELQEKAAK----LA--GKEAAIFVPSGTMGNLIAIMTHCDR-------------------------RD--S-EIIV- 146 (285)
Q Consensus 102 ~~~~l~~~la~----~~--g~~~~~~~~~Gs~a~~~al~~~~~~-------------------------~g--~-~vi~- 146 (285)
...++.+.+++ +. +.+.++|++|||+|++.|++++... +| + +||.
T Consensus 102 ~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~ 181 (464)
T TIGR00699 102 PSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSF 181 (464)
T ss_pred HHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEE
Confidence 56677777654 44 3467899999999999999998532 11 1 3444
Q ss_pred cCCcceeeecccccccccccccc--cceeeeeeecCC-C-------------CCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQI--GRVLMRGVTNQK-D-------------GTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~-~-------------~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
...||+.+..+..+...+.+... .......+|.+. . ...+++++++++++ +.+++++|++
T Consensus 182 ~~syHG~t~~als~t~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~----~~~~iAAvI~ 257 (464)
T TIGR00699 182 KGAFHGRLFGSLSTTRSKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKK----WHKPVAAIIV 257 (464)
T ss_pred CCCcCCccHHHHHhcCCccccccCCCCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHh----cCCcEEEEEE
Confidence 67889887543332211111111 001111222211 0 00246677788864 3447999999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCe---E-EEecccccC
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDT---V-MFCLSKGLG 269 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv---~-~~s~sK~l~ 269 (285)
|++++..|....|.++|++|+++|++||+++|+||+++++. ...++.++ - +.+++|+++
T Consensus 258 EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~t~gK~lg 325 (464)
T TIGR00699 258 EPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMVTFSKKFQ 325 (464)
T ss_pred eCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEEEehhhhc
Confidence 99999884455689999999999999999999999988432 23333333 1 467789995
No 269
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.79 E-value=1.5e-18 Score=155.37 Aligned_cols=165 Identities=20% Similarity=0.165 Sum_probs=128.3
Q ss_pred CccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeee
Q psy5413 96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMR 175 (285)
Q Consensus 96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~ 175 (285)
.|+..+...++++.+++++|.+.+++++||++|+..++.++..++|++|+++...|..+.... ...|.+++
T Consensus 13 ~~~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~---------~~~g~~~~ 83 (352)
T cd00616 13 WLTLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI---------LLLGATPV 83 (352)
T ss_pred CccCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH---------HHcCCeEE
Confidence 345567899999999999999888999999999999999874368999999888876553311 23477888
Q ss_pred eeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh-
Q psy5413 176 GVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE- 252 (285)
Q Consensus 176 ~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~- 252 (285)
.++.++ ++.+|++++++++++ ++++|++++++ |.+.| +++|.++|+++|+++|+|++|+ +...
T Consensus 84 ~~~~~~~~~~~d~~~l~~~i~~-------~~~~v~~~~~~----G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~~~~ 149 (352)
T cd00616 84 FVDIDPDTYNIDPELIEAAITP-------RTKAIIPVHLY----GNPAD---MDAIMAIAKRHGLPVIEDAAQALGATYK 149 (352)
T ss_pred EEecCCCcCCcCHHHHHHhcCc-------CCeEEEEECCC----CCcCC---HHHHHHHHHHcCCeEEEECCCCCCCeEC
Confidence 887765 677899999999976 78999987654 78888 9999999999999999999987 2211
Q ss_pred ---hcccCCeEEEecc--cccCcceeEEeecC-cccc
Q psy5413 253 ---VCASVDTVMFCLS--KGLGAPVGSILAGP-EEFI 283 (285)
Q Consensus 253 ---~~~~~dv~~~s~s--K~l~~p~gg~~~~~-~~~i 283 (285)
+....|+.++|++ |+++++.||+++.+ ++++
T Consensus 150 ~~~~~~~~d~~~~S~~~~K~~~~~~gg~~~~~~~~~~ 186 (352)
T cd00616 150 GRKVGTFGDAGAFSFHPTKNLTTGEGGAVVTNDEELA 186 (352)
T ss_pred CEEcccCcceeEEcCCCCCCCcccCceEEEECCHHHH
Confidence 1123577777766 99977777767654 4543
No 270
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=99.79 E-value=3.3e-18 Score=155.96 Aligned_cols=186 Identities=19% Similarity=0.185 Sum_probs=131.4
Q ss_pred CcHHHHHHHHhcccC--------CCCccCChhHHHHHH----HHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEE
Q psy5413 79 PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQE----KAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEII 145 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~----~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi 145 (285)
.+|+|++++.+.... ...|...+...++++ .+++++|.+.. +++++|++|+..++.+++ ++||+|+
T Consensus 31 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l~-~~Gd~Vl 109 (402)
T cd00378 31 TSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYANVQPHSGSQANLAVYFALL-EPGDTIM 109 (402)
T ss_pred CCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCceeeecCCcHHHHHHHHHHhc-CCCCEEE
Confidence 488999998765421 223444444555554 46788888765 666789999999999987 6999999
Q ss_pred ecCCcceeeeccccc--ccccccccccceeeeeeecCC---CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413 146 VGDCSHIMLWEQGGA--SQTSVYSQIGRVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220 (285)
Q Consensus 146 ~~~~~h~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~ 220 (285)
++++.|......... . ...|.++..++... ++.+|++++++++.+. ++++|+++++++ |.
T Consensus 110 ~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~------~~~~v~~~~~~~---~~ 174 (402)
T cd00378 110 GLDLSHGGHLTHGSFTKV------SASGKLFESVPYGVDPETGLIDYDALEKMALEF------KPKLIVAGASAY---PR 174 (402)
T ss_pred EecCccCccccccccccc------cccceeEEEecCCcCcccCCcCHHHHHHHHHhC------CCCEEEecCccc---CC
Confidence 988776433221110 1 23465555554322 5779999999999642 678898888765 45
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc-ccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE-EFI 283 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~-~~i 283 (285)
..+ +++|+++|++||+++|+|++|. +.. ....++|+++.|+||+++||+||+++.++ +++
T Consensus 175 ~~~---~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~ 242 (402)
T cd00378 175 PID---FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELA 242 (402)
T ss_pred CcC---HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHH
Confidence 667 9999999999999999999974 221 11126788899999999888888888766 654
No 271
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.79 E-value=1.6e-18 Score=156.27 Aligned_cols=190 Identities=16% Similarity=0.137 Sum_probs=141.0
Q ss_pred CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~ 152 (285)
....+.+++++.+.. ++..........++++.+++++|.+. .+++.|||++++.++..+. .+|+++++....+.
T Consensus 14 ~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l~-~~~~~vlv~~~~~~ 91 (368)
T PRK13479 14 LTTSRTVREAMLRDW-GSWDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSLV-PRDGKVLVPDNGAY 91 (368)
T ss_pred CCCCHHHHHHhCCCC-CCCChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCch
Confidence 557889999987764 33221112468899999999998742 4689999999999999987 57777776544322
Q ss_pred eeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHH
Q psy5413 153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA 232 (285)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~ 232 (285)
... ....+ +..|.+++.++.++++..|+++++++++++ .++++|.+++++|++ |.+.| +++|.+
T Consensus 92 ~~~-~~~~~------~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~t-G~~~~---~~~i~~ 155 (368)
T PRK13479 92 GAR-IAQIA------EYLGIAHVVLDTGEDEPPDAAEVEAALAAD-----PRITHVALVHCETTT-GILNP---LDEIAA 155 (368)
T ss_pred HHH-HHHHH------HHcCCcEEEEECCCCCCCCHHHHHHHHHhC-----CCCcEEEEEcccCcc-ccccC---HHHHHH
Confidence 111 01122 345888888888666778999999998751 156789999999999 89999 899999
Q ss_pred HHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCccee-EEeecCccccc
Q psy5413 233 RCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFIQ 284 (285)
Q Consensus 233 la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i~ 284 (285)
+|+++|+++|+|+++. + +.....++|+++.+++||+++|.| |+++.++++++
T Consensus 156 l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~ 212 (368)
T PRK13479 156 VAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELE 212 (368)
T ss_pred HHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHH
Confidence 9999999999998866 2 121234789999999999977544 88888776653
No 272
>PRK08354 putative aminotransferase; Provisional
Probab=99.79 E-value=2.5e-18 Score=151.52 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=134.8
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEe
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIV 146 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~ 146 (285)
.+++|..+....+++.+.+++.+.......|. ....+++.++++.|. .+++++|+++++..++.. + .+|+.|++
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~~~~~yp---~~~~l~~~ia~~~~~-~I~vt~G~~~al~~~~~~-~-~~gd~vlv 82 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKEISGRYT---YYEWLEEEFSKLFGE-PIVITAGITEALYLIGIL-A-LRDRKVII 82 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHHHhhcCC---ChHHHHHHHHHHHCC-CEEECCCHHHHHHHHHHh-h-CCCCeEEE
Confidence 46888876334456888888876543333443 357899999999984 578888899998877754 4 37999999
Q ss_pred cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
++++|....... +..|.+++.++ +|++.+++.+++ ++++++++|+||| |.+++.++
T Consensus 83 ~~P~y~~~~~~~---------~~~g~~~~~~~------~d~~~l~~~~~~--------~~~vi~~~P~NPT-G~~~~~~~ 138 (311)
T PRK08354 83 PRHTYGEYERVA---------RFFAARIIKGP------NDPEKLEELVER--------NSVVFFCNPNNPD-GKFYNFKE 138 (311)
T ss_pred eCCCcHHHHHHH---------HHcCCEEeecC------CCHHHHHHhhcC--------CCEEEEecCCCCC-CCccCHHH
Confidence 988876554422 23477776654 478889888753 4678899999999 99999999
Q ss_pred HHHHHHHHHHcCCeEEEeCccCChhhh---cccCC-eEEEecccccCc--ceeEEeec
Q psy5413 227 LRELKARCQEHNIPVHMDGARLPLAEV---CASVD-TVMFCLSKGLGA--PVGSILAG 278 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~~~~~~---~~~~d-v~~~s~sK~l~~--p~gg~~~~ 278 (285)
+++|+++|++||+++|+||+|..+..- ..... +++.|+||.++. .+.|++++
T Consensus 139 l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 139 LKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred HHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee
Confidence 999999999999999999998743211 11222 448999998874 56677765
No 273
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.79 E-value=2.5e-18 Score=158.28 Aligned_cols=205 Identities=12% Similarity=0.110 Sum_probs=147.4
Q ss_pred eeeeeccCCcCCCcHHHHHHHHhccc-------------CCCCccCChhHHHHHHHHHhHcCC----------CcEEEcC
Q psy5413 67 RTVDIRSDTISKPTMEMKNYMFNCEV-------------GDDVYLEDPTCKELQEKAAKLAGK----------EAAIFVP 123 (285)
Q Consensus 67 ~~~~~~~~~~~~~~~~v~~a~~~~~~-------------~~~~y~~~~~~~~l~~~la~~~g~----------~~~~~~~ 123 (285)
.+|+++...-...+..+.+.+.+... ....|....+..+|++.++++++. +.+++++
T Consensus 48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~ 127 (447)
T PLN02607 48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTA 127 (447)
T ss_pred ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcC
Confidence 47888765556678888888876432 012344445678899999988641 2357888
Q ss_pred ChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhccccccc
Q psy5413 124 SGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIH 201 (285)
Q Consensus 124 ~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~ 201 (285)
|+++|++.++.+++ .+||.|+++.++|........ ...|++++.++.++ .+.+|++++++++++. ...
T Consensus 128 G~t~al~~l~~~l~-~pGD~Vlv~~P~Y~~f~~~~~--------~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a-~~~ 197 (447)
T PLN02607 128 GATAANELLTFILA-DPGDALLVPTPYYPGFDRDLR--------WRTGVKIVPIHCDSSNNFQVTPQALEAAYQEA-EAA 197 (447)
T ss_pred ChHHHHHHHHHHhC-CCCCEEEEcCCCCcchHHHHH--------hcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHH-HHh
Confidence 88999999988877 699999999888754432111 12478888887643 3458999999998652 112
Q ss_pred CCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcc-----c-CC--eEEEe
Q psy5413 202 CASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCA-----S-VD--TVMFC 263 (285)
Q Consensus 202 ~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~-----~-~d--v~~~s 263 (285)
+.++++|++++|+||+ |.+++.+.+++|.++|++||+++|+||+|.. ...+.. . .+ +++.|
T Consensus 198 ~~~vk~lll~nP~NPt-G~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s 276 (447)
T PLN02607 198 NIRVRGVLITNPSNPL-GATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYS 276 (447)
T ss_pred CCCeeEEEEeCCCCCc-CcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEc
Confidence 4478999999999999 9999999999999999999999999999872 111111 1 12 33899
Q ss_pred cccccCc--ceeEEeec-Cccc
Q psy5413 264 LSKGLGA--PVGSILAG-PEEF 282 (285)
Q Consensus 264 ~sK~l~~--p~gg~~~~-~~~~ 282 (285)
+||.+|. .+.|++++ ++++
T Consensus 277 ~SK~fg~~GlRvG~ivs~n~~l 298 (447)
T PLN02607 277 LSKDLGLPGFRVGTIYSYNDKV 298 (447)
T ss_pred chhcCCCCcceEEEEEEcCHHH
Confidence 9998864 67777776 4444
No 274
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.79 E-value=2.1e-18 Score=154.67 Aligned_cols=195 Identities=11% Similarity=0.089 Sum_probs=141.1
Q ss_pred eeeeeccCC-cCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 67 RTVDIRSDT-ISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 67 ~~~~~~~~~-~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
.+++|..+. +..+++.+.+++.+.......|. ++...+|++.++++++.+ .+++++|+++++..+++++ .+ +.
T Consensus 20 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~-~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~--~~-~~ 95 (354)
T PRK06358 20 MILDFSANINPLGVPESLKQAITENLDKLVEYP-DPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVT--KP-KK 95 (354)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh--CC-Cc
Confidence 468887654 44467789999887654334564 455789999999998764 4688999999999998874 34 46
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCC--CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD--GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~ 221 (285)
|+++.+++..... .. ...|.+++.++.+.+ +.+| +++++.+.. ++++|++++|+||| |.+
T Consensus 96 v~i~~P~y~~~~~---~~------~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~-------~~~~v~~~~P~NPt-G~~ 157 (354)
T PRK06358 96 VLILAPTFAEYER---AL------KAFDAEIEYAELTEETNFAAN-EIVLEEIKE-------EIDLVFLCNPNNPT-GQL 157 (354)
T ss_pred EEEecCChHHHHH---HH------HHcCCeeEEEeCccccCCCcc-HHHHHhhcc-------CCCEEEEeCCCCCC-CCc
Confidence 7787776543322 11 244788888886432 4577 666666655 68899999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-CeE-EEecccccCc--ceeEEeec-Ccccc
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-DTV-MFCLSKGLGA--PVGSILAG-PEEFI 283 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~-~~~~i 283 (285)
++.+.+++|+++|++||+++|+||+|..+. ...... .++ +.|+||.++. .+.|+++. +++++
T Consensus 158 ~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~ 233 (354)
T PRK06358 158 ISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA 233 (354)
T ss_pred cCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHH
Confidence 999999999999999999999999986211 111222 344 8999999873 67777775 45554
No 275
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.79 E-value=1.9e-18 Score=156.34 Aligned_cols=179 Identities=18% Similarity=0.149 Sum_probs=133.8
Q ss_pred HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413 81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160 (285)
Q Consensus 81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~ 160 (285)
++-.+++.+.+.... +..++...+||+.+++++|.+.+++++||++|+.+++.++..++||+||++...|..+....
T Consensus 14 ~~e~~~~~~~l~~~~-~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~-- 90 (379)
T PRK11658 14 DEELAAVKEVLRSGW-ITTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMI-- 90 (379)
T ss_pred HHHHHHHHHHHHcCC-ccCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHH--
Confidence 344556555443322 23467799999999999999999999999999999999873368999999988876553321
Q ss_pred ccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 161 SQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
...|.+++.++.+++ +.+|++++++++++ ++++|+..++ + |...+ +++|+++|++||+
T Consensus 91 -------~~~G~~~v~vd~~~~~~~~d~~~l~~~i~~-------~tkav~~~~~---~-G~~~d---~~~i~~~a~~~gi 149 (379)
T PRK11658 91 -------VLLGATPVMVDVDRDTLMVTPEAIEAAITP-------RTKAIIPVHY---A-GAPAD---LDAIRAIGERYGI 149 (379)
T ss_pred -------HHcCCEEEEEecCCCcCCcCHHHHHHhccc-------CCeEEEEeCC---C-CCcCC---HHHHHHHHHHcCC
Confidence 234888888887543 46899999999987 7888885544 4 88888 9999999999999
Q ss_pred eEEEeCccC-Chhh----h-cccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413 240 PVHMDGARL-PLAE----V-CASVDTVMFCLSKGLGAPVGSILAGP-EEFI 283 (285)
Q Consensus 240 ~li~Dea~~-~~~~----~-~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i 283 (285)
++|+|++|+ +... . ..+.+++.++.+|.++++.||+++++ ++++
T Consensus 150 ~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~ 200 (379)
T PRK11658 150 PVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEGGLVVTDDDELA 200 (379)
T ss_pred eEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCceEEEECCHHHH
Confidence 999999987 2211 1 12334556667788888778877764 5654
No 276
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.79 E-value=2.2e-18 Score=154.28 Aligned_cols=187 Identities=13% Similarity=0.161 Sum_probs=138.7
Q ss_pred CCCcHHHHHHHHhcccCCC--CccCChhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHccccCCCeEEe-cCC
Q psy5413 77 SKPTMEMKNYMFNCEVGDD--VYLEDPTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDRRDSEIIV-GDC 149 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~--~y~~~~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~g~~vi~-~~~ 149 (285)
....+.+++++.+. .++. .| .+...++++.+++++|.+. ++++.|||+++..++..++ .+++++++ .+.
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-~~~~~vi~~~~~ 83 (355)
T TIGR03301 8 LSTSATVRDAMLVD-WCHWDSEF--NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-PRDGKLLVLING 83 (355)
T ss_pred CCCCHHHHHHhhhh-ccCCCHHH--HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-CCCCeEEEECCC
Confidence 44688999998772 2232 23 3668899999999999753 4688999999999999987 46666554 445
Q ss_pred cceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~ 229 (285)
+|.... ...+ ...|.+++.++.++++.+|++++++.++++ .++++|++.++++++ |.+.| +++
T Consensus 84 ~~~~~~--~~~a------~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~-----~~~~~v~~~~~~~~~-G~~~~---~~~ 146 (355)
T TIGR03301 84 AYGERL--AKIC------EYLGIPHTDLNFSEYEPPDLNRIEEALAAD-----PDITHVATVHHETTT-GILNP---LEA 146 (355)
T ss_pred chhhHH--HHHH------HHcCCceEEEecCCCCCCCHHHHHHHHHhC-----CCceEEEEEecCCcc-cchhH---HHH
Confidence 443211 1122 345888888887666788999999999751 156788888888888 89999 999
Q ss_pred HHHHHHHcCCeEEEeCccC-C---hhhhcccCCeEEEecccccCc-ceeEEeecCccccc
Q psy5413 230 LKARCQEHNIPVHMDGARL-P---LAEVCASVDTVMFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 230 i~~la~~~gi~li~Dea~~-~---~~~~~~~~dv~~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
|+++|++||+++|+|++++ + ......+.|+++.|++||+++ +..|+++.++++++
T Consensus 147 i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~ 206 (355)
T TIGR03301 147 IAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLE 206 (355)
T ss_pred HHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHH
Confidence 9999999999999999876 2 111224688999999999876 43478888777654
No 277
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=99.78 E-value=5e-18 Score=155.52 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=136.4
Q ss_pred eeeec-cCCcCCCcHHHHHHHHhcccCC-------CCc-cCChhHHHHHH----HHHhHcCCCcE-EEcCChHHHHHHHH
Q psy5413 68 TVDIR-SDTISKPTMEMKNYMFNCEVGD-------DVY-LEDPTCKELQE----KAAKLAGKEAA-IFVPSGTMGNLIAI 133 (285)
Q Consensus 68 ~~~~~-~~~~~~~~~~v~~a~~~~~~~~-------~~y-~~~~~~~~l~~----~la~~~g~~~~-~~~~~Gs~a~~~al 133 (285)
.++|. ++++ .+|+|++++.+..... ..+ ...+...++++ .+++++|.+.. +++++|++|+..++
T Consensus 27 ~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~sgt~al~~~l 104 (416)
T PRK00011 27 HIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPHSGSQANAAVY 104 (416)
T ss_pred CeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceeeecCCchHHHHHHH
Confidence 34444 4555 6889999986653211 111 12233445544 78999998776 66678999999999
Q ss_pred HHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
.+++ ++||+|+++.+.|....... ... + ...|.+++.++.+ +++.+|++++++++++. ++++|+++
T Consensus 105 ~~l~-~~gd~Vl~~~~~~~~~~~~~~~~~----~-~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~------~~k~v~~~ 172 (416)
T PRK00011 105 FALL-KPGDTILGMDLAHGGHLTHGSPVN----F-SGKLYNVVSYGVDEETGLIDYDEVEKLALEH------KPKLIIAG 172 (416)
T ss_pred HHhc-CCCCEEEEeccccCCccccccccc----c-ccceeeEeecCcCcccCCcCHHHHHHHHHhc------CCCEEEEC
Confidence 9886 68999999888775432111 010 0 1235667777764 34779999999999652 57888886
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP-EEFI 283 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i 283 (285)
++.+ |...| +++|+++|++||+++|+|++|. +.. ....++|+++.|+||+++||+||+++.+ ++++
T Consensus 173 ~~~~---~~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~~~~~ 246 (416)
T PRK00011 173 ASAY---SRPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTNDEELA 246 (416)
T ss_pred CCcC---CCccC---HHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCCHHHH
Confidence 5443 56677 9999999999999999999975 221 1122678999999999988889999885 4654
Q ss_pred c
Q psy5413 284 Q 284 (285)
Q Consensus 284 ~ 284 (285)
+
T Consensus 247 ~ 247 (416)
T PRK00011 247 K 247 (416)
T ss_pred H
Confidence 3
No 278
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.78 E-value=4e-18 Score=153.37 Aligned_cols=176 Identities=18% Similarity=0.141 Sum_probs=129.3
Q ss_pred HHHHHHHHhcccCCCCccC-ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413 81 MEMKNYMFNCEVGDDVYLE-DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG 159 (285)
Q Consensus 81 ~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~ 159 (285)
.+.++++.+.+... .+.. .+...++|+.+++++|.+.++.++||+.|+.+++.++-.++|++|+++..+...+.....
T Consensus 5 ~e~~~~v~~~l~s~-~~~~~g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~ 83 (363)
T PF01041_consen 5 EEEIDAVLEVLRSG-WLSTYGPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAIL 83 (363)
T ss_dssp HHHHHHHHHHHHHT-CCSSSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccCCCHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHH
Confidence 34556666655543 3333 688999999999999999999999999999999999876789999998877655433222
Q ss_pred cccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413 160 ASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238 (285)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g 238 (285)
..|.+++.++.+ +++.+|+++++++|++ ++++|++.+.. |...+ +.+|.++|++||
T Consensus 84 ---------~~G~~pv~~Di~~~~~~id~~~~~~~i~~-------~t~ai~~~h~~----G~~~d---~~~i~~~~~~~~ 140 (363)
T PF01041_consen 84 ---------WAGAEPVFVDIDPETLNIDPEALEKAITP-------KTKAILVVHLF----GNPAD---MDAIRAIARKHG 140 (363)
T ss_dssp ---------HTT-EEEEE-BETTTSSB-HHHHHHHHHT-------TEEEEEEE-GG----GB------HHHHHHHHHHTT
T ss_pred ---------HhccEEEEEeccCCcCCcCHHHHHHHhcc-------CccEEEEecCC----CCccc---HHHHHHHHHHcC
Confidence 348888888876 6788999999999998 89999999888 78888 999999999999
Q ss_pred CeEEEeCccCC-hh----hhcccCCeEEEec--ccccCcceeEEeecCc
Q psy5413 239 IPVHMDGARLP-LA----EVCASVDTVMFCL--SKGLGAPVGSILAGPE 280 (285)
Q Consensus 239 i~li~Dea~~~-~~----~~~~~~dv~~~s~--sK~l~~p~gg~~~~~~ 280 (285)
++||.|.+|+. .. ......|+.++|| .|.+...-||+++.+.
T Consensus 141 i~lIeD~a~a~g~~~~g~~~G~~gd~~~fSf~~~K~i~~geGG~v~~~~ 189 (363)
T PF01041_consen 141 IPLIEDAAQAFGARYKGRPVGSFGDIAIFSFHPTKIITTGEGGAVVTND 189 (363)
T ss_dssp -EEEEE-TTTTT-EETTEETTSSSSEEEEESSTTSSS-SSS-EEEEEST
T ss_pred CcEEEccccccCceeCCEeccCCCCceEecCCCCCCCcCCCCeeEEecH
Confidence 99999999882 11 1223457778887 5888776778777654
No 279
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.78 E-value=3e-18 Score=152.94 Aligned_cols=178 Identities=21% Similarity=0.279 Sum_probs=129.2
Q ss_pred HHHHHHHhcccC-CCCccCChhHHHHHHHHHh----HcCCC----cEEEcCChHHHHHHHHHHcccc-----------CC
Q psy5413 82 EMKNYMFNCEVG-DDVYLEDPTCKELQEKAAK----LAGKE----AAIFVPSGTMGNLIAIMTHCDR-----------RD 141 (285)
Q Consensus 82 ~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~----~~g~~----~~~~~~~Gs~a~~~al~~~~~~-----------~g 141 (285)
.+.+.+...... ...|...+...++++.+++ ++|.+ .++|+++|++|+..++.++..+ ++
T Consensus 14 ~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~ 93 (345)
T cd06450 14 LLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGI 93 (345)
T ss_pred HHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhccccccc
Confidence 333444433332 3447766667777777654 45764 5799999999999999987531 22
Q ss_pred --CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCe
Q psy5413 142 --SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG 219 (285)
Q Consensus 142 --~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG 219 (285)
..|++++.+|.+...... ..|.+++.++.++++.+|+++|++++++.. .++.++++|+++.++|++ |
T Consensus 94 ~~~~v~~~~~~h~~~~~~~~---------~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~-~~~~~~~~v~~~~~~~~t-G 162 (345)
T cd06450 94 DKLVIVCSDQAHVSVEKAAA---------YLDVKVRLVPVDEDGRMDPEALEAAIDEDK-AEGLNPIMVVATAGTTDT-G 162 (345)
T ss_pred CCeEEEEcCcchhHHHHHHH---------HHhcCeEEeeeCCCCCcCHHHHHHHHHHHH-HCCCCcEEEEEecccCCC-C
Confidence 357778888877544222 237888888887777899999999997521 123367889999999998 8
Q ss_pred eeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-h---------hcccCCeEEEecccccCccee
Q psy5413 220 TVLPMQWLRELKARCQEHNIPVHMDGARLPLA-E---------VCASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 220 ~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-~---------~~~~~dv~~~s~sK~l~~p~g 273 (285)
.+.+ +++|+++|++||+++|+|++|.... . ...++|++++++||++++|.|
T Consensus 163 ~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g 223 (345)
T cd06450 163 AIDP---LEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLG 223 (345)
T ss_pred CCCC---HHHHHHHHHHhCCeEEEechhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcc
Confidence 8888 9999999999999999999988221 1 113689999999999887544
No 280
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.78 E-value=4.2e-18 Score=156.29 Aligned_cols=238 Identities=13% Similarity=0.086 Sum_probs=152.0
Q ss_pred CccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCc--cCChh
Q psy5413 27 PALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVY--LEDPT 102 (285)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y--~~~~~ 102 (285)
|..+.++.+.+.|+..++.+++.+..++. .+.++.+|++.+++.+++... ..+ ..++.
T Consensus 24 p~~~~~~~G~~l~d~dG~~~lD~~~g~~~------------------~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~~~ 85 (425)
T PRK08088 24 PIFADRAENCRVWDVEGREYLDFAGGIAV------------------LNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEP 85 (425)
T ss_pred CceEEeeeeCEEEeCCCCEEEEcCCchhh------------------cCCCCCCHHHHHHHHHHHhhCCCccccccCCHH
Confidence 56667778888887554444443333332 234778999999999887632 211 12456
Q ss_pred HHHHHHHHHhHcCC---CcEEEcCChHHHHHHHHHHccccCCC--eEEecCCcceeeecccccccc-ccccccc-----c
Q psy5413 103 CKELQEKAAKLAGK---EAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLWEQGGASQT-SVYSQIG-----R 171 (285)
Q Consensus 103 ~~~l~~~la~~~g~---~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~-~~~~~~~-----g 171 (285)
..++.+.+++..+. +..+|++||++|++.|++++....++ .|.+.+.||+.+.....+... ..+...+ +
T Consensus 86 ~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (425)
T PRK08088 86 YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGH 165 (425)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCC
Confidence 77899999988753 46799999999999999998754433 344577889887543332211 1111111 1
Q ss_pred eeeeeeecCCCCC---CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 172 VLMRGVTNQKDGT---FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 172 ~~~~~~~~~~~~~---~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
.....+|....+. .+++++++.++.. .+.+++++|++|+.++..|+...+.+++++|+++|++||+++|+||+++
T Consensus 166 ~~~~~~p~~~~~~~~~~~~~~l~~~l~~~--~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~ 243 (425)
T PRK08088 166 VYRALYPCPLHGVSEDDAIASIERIFKND--AAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT 243 (425)
T ss_pred cEEcCCCccccCccHHHHHHHHHHHHHhc--cCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 1112222211110 1256688877521 1234799999999988876778899999999999999999999999988
Q ss_pred Chh-----hhcccCCeE--EEecccccCc-ceeEEeecCccccc
Q psy5413 249 PLA-----EVCASVDTV--MFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 249 ~~~-----~~~~~~dv~--~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
++. ...+..++. +.++||.+++ .+.|+++.++++++
T Consensus 244 g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~~~ 287 (425)
T PRK08088 244 GAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEVMD 287 (425)
T ss_pred CCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHHHh
Confidence 321 111122222 7899999987 33455666666554
No 281
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.78 E-value=8.2e-18 Score=152.39 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=132.5
Q ss_pred eccCCcCCCcHHHHHHHHhcccC-----CC--CccCChhHHHHHHHH---HhHcCC---CcEEEcCChHHHHHHHHHHcc
Q psy5413 71 IRSDTISKPTMEMKNYMFNCEVG-----DD--VYLEDPTCKELQEKA---AKLAGK---EAAIFVPSGTMGNLIAIMTHC 137 (285)
Q Consensus 71 ~~~~~~~~~~~~v~~a~~~~~~~-----~~--~y~~~~~~~~l~~~l---a~~~g~---~~~~~~~~Gs~a~~~al~~~~ 137 (285)
|.+...+..++.|.+++.+.... +. .|+ ......+++.+ ++.++. +.+++++|+++++..++.++.
T Consensus 3 ld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~ 81 (382)
T TIGR03403 3 LDNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVY 81 (382)
T ss_pred ccCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 33334455678899998765532 11 122 12334455444 444443 456899999999999988753
Q ss_pred c----cC-CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 138 D----RR-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 138 ~----~~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
. ++ +++|+++...|.+........ ...|.+++.++.++++.+|++++++++++ ++++|++++
T Consensus 82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~------~~~G~~v~~v~~~~~g~~d~~~l~~~i~~-------~t~lv~~~~ 148 (382)
T TIGR03403 82 FDEILKGGKNHIITTEVEHPAVRATCAFL------ESLGVEVTYLPINEQGTITAEQVREAITE-------KTALVSVMW 148 (382)
T ss_pred HhhcccCCCCEEEEcCCccHHHHHHHHHH------HHCCCEEEEEecCCCCCCCHHHHHHhccc-------CCeEEEEEc
Confidence 1 34 457888877765443321111 34588899998877788899999999987 789999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCcceeEEee
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGAPVGSILA 277 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~p~gg~~~ 277 (285)
++|++ |.++| +++|.++|+++|+++|+|+++. +. .....++|++++|++|++|.+-.|++.
T Consensus 149 ~~n~t-G~~~~---~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~ 213 (382)
T TIGR03403 149 ANNET-GMIFP---IKEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLY 213 (382)
T ss_pred ccCCC-ccccC---HHHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEE
Confidence 99999 99999 8999999999999999999987 22 222357999999999987644234443
No 282
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.78 E-value=3.8e-18 Score=153.63 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=137.5
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C---C--CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G---K--EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g---~--~~~~~~~~Gs~a~~~al~ 134 (285)
+..+++|..+++..+ .+.+.+++.+.. ....|.......++++.+++++ | . +.+++++|+++++..++.
T Consensus 26 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~ 104 (364)
T PRK07865 26 PDGIVDLSVGTPVDPVPPVIQEALAAAA-DAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPT 104 (364)
T ss_pred CCCEEEcCCCCCCCCCCHHHHHHHHHHH-hhCCCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHH
Confidence 346789998887655 467788876543 2346765556778888888886 3 2 245788888888888777
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
++..++|+.|+++.++|....... ...|.+++.++ +++++++ . ++++|++++|+
T Consensus 105 ~l~~~~gd~Vl~~~p~y~~~~~~~---------~~~g~~~~~~~-------~~~~l~~---~-------~~~~v~~~~p~ 158 (364)
T PRK07865 105 LLGLGPGDVVVIPELAYPTYEVGA---------RLAGATVVRAD-------SLTELGP---Q-------RPALIWLNSPS 158 (364)
T ss_pred HHcCCCCCEEEECCCCcccHHHHH---------HhcCCEEEecC-------ChhhCCc---c-------cceEEEEcCCC
Confidence 662268999999988876543322 23477776663 2233221 2 68999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh------h-hcc-----cCC--eEEEecccccC--cceeEEeec
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA------E-VCA-----SVD--TVMFCLSKGLG--APVGSILAG 278 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~------~-~~~-----~~d--v~~~s~sK~l~--~p~gg~~~~ 278 (285)
||| |.+++.+++++|+++|++||+++|+||+|..+. . +.. ..+ +++.|+||.++ |.++|++++
T Consensus 159 NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~ 237 (364)
T PRK07865 159 NPT-GRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAG 237 (364)
T ss_pred CCC-CccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEec
Confidence 999 999999999999999999999999999987221 1 100 112 45999999885 478889999
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 238 ~~~~~~ 243 (364)
T PRK07865 238 DPALVA 243 (364)
T ss_pred CHHHHH
Confidence 887754
No 283
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.77 E-value=3.9e-18 Score=153.91 Aligned_cols=196 Identities=19% Similarity=0.196 Sum_probs=147.6
Q ss_pred eeccCCcCCCcHHHHHHHHhcccCC------CCcc----CChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHc
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVGD------DVYL----EDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~~------~~y~----~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~ 136 (285)
.|.+...+..++.|++++.+..... ..+. ..+...++++.+++++|.+. ++|+.|++.++..++..+
T Consensus 2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l 81 (371)
T PF00266_consen 2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSL 81 (371)
T ss_dssp EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHH
T ss_pred EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhcc
Confidence 4555555667889999988764421 1111 23457799999999999876 589999999999999997
Q ss_pred c--ccCCCeEEecCCcceeeec-ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 137 C--DRRDSEIIVGDCSHIMLWE-QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 137 ~--~~~g~~vi~~~~~h~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
. .++|++|++....|.+... +.... +..|.++..++.+.++.+|+++++++|++ ++++|.+.+.
T Consensus 82 ~~~~~~g~~vl~~~~~~~s~~~~~~~~~------~~~g~~v~~i~~~~~~~~~~~~~~~~l~~-------~~~lv~~~~~ 148 (371)
T PF00266_consen 82 LNPLKPGDEVLVTSNEHPSNRYPWEEIA------KRKGAEVRVIPADPGGSLDLEDLEEALNP-------DTRLVSISHV 148 (371)
T ss_dssp HHHGTTTCEEEEEESSHHHHHHHHHHHH------HHTTEEEEEEEEGTTSSCSHHHHHHHHHT-------TESEEEEESB
T ss_pred cccccccccccccccccccccccccccc------ccchhhhccccccccchhhhhhhhhhhcc-------ccceEEeecc
Confidence 2 2688999887777655431 11122 35688988888877788999999999987 8999999999
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI 283 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i 283 (285)
.+.+ |.+.| +++|.++||++|+++++|.+++ .+..-..++|+++++.+| |++|. .|++..+++.+
T Consensus 149 ~~~t-G~~~p---i~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~ 218 (371)
T PF00266_consen 149 ENST-GVRNP---IEEIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHK-LGGPPGLGFLYVRPEAI 218 (371)
T ss_dssp ETTT-TBBSS---HHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTS-TTSSSTEEEEEEEHHHH
T ss_pred cccc-cEEee---eceehhhhhccCCceeEechhccccccccccccccceeeecccc-cCCCCchhhheehhhhh
Confidence 9888 89999 9999999999999999999988 233333588999999999 77754 46777666554
No 284
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=6.1e-18 Score=150.72 Aligned_cols=193 Identities=17% Similarity=0.140 Sum_probs=140.7
Q ss_pred CeeeeeccCCcC-CCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413 66 IRTVDIRSDTIS-KPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~ 140 (285)
..+++|..+... .+++.+.+++.+.... ...|. .+...++++.++++++.+ .+++++|+++++..++..+ +
T Consensus 18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~---~ 93 (337)
T PRK03967 18 NYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYP-HITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF---E 93 (337)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHhhcCccccCC-CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh---C
Confidence 456888876655 4668899988766532 34564 457889999999999854 4578888888888777653 6
Q ss_pred CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413 141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220 (285)
Q Consensus 141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~ 220 (285)
|++|+++.++|..... .. ...|.+++.++.+.++.+|++++++.+ + +++++++++|+||| |.
T Consensus 94 gd~V~v~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~d~~~l~~~~-~-------~~~~v~~~~P~NPt-G~ 155 (337)
T PRK03967 94 GKHIVITPPTFGMYSF---YA------KLNGIPVIDVPLKEDFTIDGERIAEKA-K-------NASAVFICSPNNPT-GN 155 (337)
T ss_pred CCeEEEeCCChHHHHH---HH------HHcCCeEEEeecCCCCCcCHHHHHHhc-c-------CCCEEEEeCCCCCC-CC
Confidence 8999998887753322 22 345888888887666678999998865 3 56888899999999 89
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcc-cCCeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCA-SVDTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~-~~dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++.+ +|.++++ +++++|+||+|..+. .... .-.++ +.|+||.++. .+.|+++.++++++
T Consensus 156 ~~~~~---~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~ 224 (337)
T PRK03967 156 LQPEE---EILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIID 224 (337)
T ss_pred CCCHH---HHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHH
Confidence 99954 5555554 799999999987321 1111 22344 8999999874 77888888877654
No 285
>PLN02880 tyrosine decarboxylase
Probab=99.77 E-value=3.7e-18 Score=158.44 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=141.9
Q ss_pred CCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccCC--CCccCChhHHHHHHHHHhH----cCCCc
Q psy5413 45 LSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGD--DVYLEDPTCKELQEKAAKL----AGKEA 118 (285)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~----~g~~~ 118 (285)
...++..+|.+|.+..+... ....+.++..+.....+. ..|...|...++|+.+.++ +|.+.
T Consensus 72 ~i~~~~~~~~hP~f~~~~~~------------~~~~~~~lad~l~~~~n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~ 139 (490)
T PLN02880 72 KILPGVTHWQSPNYFAYYPS------------NSSVAGFLGEMLSAGLNIVGFSWITSPAATELEMIVLDWLAKLLNLPE 139 (490)
T ss_pred HHhcCCCCCCCCCeeEeccC------------CCcHHHHHHHHHHHhhccCCcccccCcccHHHHHHHHHHHHHHhCCCc
Confidence 35567778888754444332 222445555554444442 3455567777777776555 46543
Q ss_pred ---------EEEcCChHHHHHHHHHHccccC---------CC-eEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413 119 ---------AIFVPSGTMGNLIAIMTHCDRR---------DS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN 179 (285)
Q Consensus 119 ---------~~~~~~Gs~a~~~al~~~~~~~---------g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 179 (285)
.+++++||+||..++.++..+. .+ .|++++.+|.+..++..+. ......++.+|.
T Consensus 140 ~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l------Glg~~~v~~Vp~ 213 (490)
T PLN02880 140 QFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA------GIHPENCRLLKT 213 (490)
T ss_pred hhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc------CCCHHHEEEeec
Confidence 5899999999999998876421 12 3667899999998866655 222224677777
Q ss_pred CC--CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----
Q psy5413 180 QK--DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----- 252 (285)
Q Consensus 180 ~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----- 252 (285)
+. ++.+|+++|+++|+++.+. +..+.+|+.+-.+-.+ |.+.| |++|+++|++||+|+|+|++|++...
T Consensus 214 d~~~~~~md~~~L~~~i~~~~~~-g~~p~~vvataGTT~~-GaiDp---l~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~ 288 (490)
T PLN02880 214 DSSTNYALAPELLSEAISTDLSS-GLIPFFLCATVGTTSS-TAVDP---LLELGKIAKSNGMWFHVDAAYAGSACICPEY 288 (490)
T ss_pred CCCcCCcCCHHHHHHHHHHHHHC-CCccEEEEEecCCCcC-cccCc---HHHHHHHHHHcCCEEEEehhhHHHHHhCHHH
Confidence 53 5689999999999874332 2345555555545445 99999 99999999999999999999983211
Q ss_pred ---h--cccCCeEEEecccccCcceeE
Q psy5413 253 ---V--CASVDTVMFCLSKGLGAPVGS 274 (285)
Q Consensus 253 ---~--~~~~dv~~~s~sK~l~~p~gg 274 (285)
+ .+++|.++.++|||++.|.++
T Consensus 289 ~~~l~gie~aDSit~d~HKwl~~P~~~ 315 (490)
T PLN02880 289 RHYIDGVEEADSFNMNAHKWFLTNFDC 315 (490)
T ss_pred HHHhcCchhcCEEEECchhhcCCCccE
Confidence 1 257899999999999986553
No 286
>PLN02509 cystathionine beta-lyase
Probab=99.77 E-value=5.4e-18 Score=155.67 Aligned_cols=158 Identities=22% Similarity=0.223 Sum_probs=124.6
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...++++.++++.+.+.++.+++|++|+.+++ .++ ++||+||++++.|..+.... ... ...|.+++.+
T Consensus 131 gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il-~ll-~~GD~VI~~~~~y~~t~~ll~~~l------~~~G~~v~~v 202 (464)
T PLN02509 131 GNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HLI-KNGEEIVAGDDVYGGSDRLLSQVV------PRSGVVVKRV 202 (464)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHH-HHh-CCCCEEEEcCCchhhHHHHHHHHH------HHCCeEEEEe
Confidence 45789999999999999998899999999886655 445 69999999887765443211 111 2347777766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch--hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL--AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~--~~~~ 254 (285)
+. .|+++++++|++ ++++|++++|+||+ |.+.+ +++|+++|++||+++|+|+++. +. ..+.
T Consensus 203 d~-----~d~e~l~~ai~~-------~TklV~lesPsNPt-G~i~D---l~~I~~lAk~~g~~lIVD~A~a~~~~~~pl~ 266 (464)
T PLN02509 203 NT-----TNLDEVAAAIGP-------QTKLVWLESPTNPR-QQISD---IRKIAEMAHAQGALVLVDNSIMSPVLSRPLE 266 (464)
T ss_pred CC-----CCHHHHHHhCCc-------CCeEEEEECCCCCC-CCHHH---HHHHHHHHHHcCCEEEEECCccccccCChhh
Confidence 53 378999999977 78999999999999 88877 9999999999999999999987 22 2234
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPE 280 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~ 280 (285)
.++|+++.|++|++++ .+||+++.+.
T Consensus 267 ~gaDivv~S~tK~l~G~gdv~gG~v~~~~ 295 (464)
T PLN02509 267 LGADIVMHSATKFIAGHSDVMAGVLAVKG 295 (464)
T ss_pred cCCcEEEecCcccccCCCccceeEEEecc
Confidence 5789999999999988 3578887543
No 287
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.77 E-value=1.2e-17 Score=151.21 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=134.3
Q ss_pred HHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccc
Q psy5413 81 MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160 (285)
Q Consensus 81 ~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~ 160 (285)
++-++++.+.+.. ..|...+...++|+.+++++|.+.+++++||++|+..++.++..++||+|+++...|..+...
T Consensus 10 ~~~~~~v~~~~~~-~~~~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~~~~~--- 85 (380)
T TIGR03588 10 QDDIDAVVEVLKS-DFLTQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALGVGPGDRVWTTPITFVATANC--- 85 (380)
T ss_pred HHHHHHHHHHHhc-CCccCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHH---
Confidence 3345566555433 234446778999999999999988888899999999999987336899999998877554321
Q ss_pred ccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 161 SQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 161 ~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
. ...|.+++.++.+ .++.+|++++++++++.. .+++++|++.++ + |...+ +++|+++|++||+
T Consensus 86 ~------~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~~~---~~~t~~v~~~~~---~-G~~~~---~~~i~~l~~~~~~ 149 (380)
T TIGR03588 86 A------LYCGAKVDFVDIDPDTGNIDEDALEKKLAAAK---GKLPKAIVPVDF---A-GKSVD---MQAIAALAKKHGL 149 (380)
T ss_pred H------HHcCCEEEEEecCCCcCCcCHHHHHHHhhccc---CCCceEEEEeCC---C-CccCC---HHHHHHHHHHcCC
Confidence 1 2348888888874 356789999999998310 017888887654 3 78888 9999999999999
Q ss_pred eEEEeCccC-Chh----hhcc--cCCeEEEecc--cccCcceeEEeecC-ccc
Q psy5413 240 PVHMDGARL-PLA----EVCA--SVDTVMFCLS--KGLGAPVGSILAGP-EEF 282 (285)
Q Consensus 240 ~li~Dea~~-~~~----~~~~--~~dv~~~s~s--K~l~~p~gg~~~~~-~~~ 282 (285)
+||+|++|+ +.. .+.. ..|+.++|+| |+++.+.||+++.+ +++
T Consensus 150 ~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~ 202 (380)
T TIGR03588 150 KIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEEL 202 (380)
T ss_pred EEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHH
Confidence 999999998 211 1112 4588888887 89988778877654 443
No 288
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.77 E-value=8.3e-18 Score=155.25 Aligned_cols=201 Identities=15% Similarity=0.104 Sum_probs=153.3
Q ss_pred CeeeeeccCCcCC---CcHHHHHHHHhccc----C-CCCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHH
Q psy5413 66 IRTVDIRSDTISK---PTMEMKNYMFNCEV----G-DDVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGN 129 (285)
Q Consensus 66 ~~~~~~~~~~~~~---~~~~v~~a~~~~~~----~-~~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~ 129 (285)
...++|..+.+.. +.....+++.+... . ...|+...+..+|++.+++++. .+.++++++..+|+
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al 168 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQAL 168 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHH
Confidence 5667887776544 45555555554432 1 2355555788899999988863 23468888889999
Q ss_pred HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
..++++++ .+||.|++.+++|..... +. +..|.+++.+|.+++ .+|+++|++.+.++ ++|+++
T Consensus 169 ~l~~~~l~-~pGd~v~vE~PtY~~~~~---~~------~~~g~~~~~vp~d~~-G~~~e~le~~~~~~------~~k~~y 231 (459)
T COG1167 169 DLLLRLLL-DPGDTVLVEDPTYPGALQ---AL------EALGARVIPVPVDED-GIDPEALEEALAQW------KPKAVY 231 (459)
T ss_pred HHHHHHhC-CCCCEEEEcCCCcHHHHH---HH------HHcCCcEEecCCCCC-CCCHHHHHHHHhhc------CCcEEE
Confidence 99999988 599999999888754322 22 356999999999644 48999999999873 789999
Q ss_pred Eec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC----------hhhhcccCCeE-EEecccccCc-ceeEEe
Q psy5413 210 VEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP----------LAEVCASVDTV-MFCLSKGLGA-PVGSIL 276 (285)
Q Consensus 210 i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~----------~~~~~~~~dv~-~~s~sK~l~~-p~gg~~ 276 (285)
+.+ -+||| |.+++.+.-++|.++|++||+++|.|+.+.. +..+...--++ +.||||.+.. .+.|++
T Consensus 232 ~~P~~qNPt-G~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~v 310 (459)
T COG1167 232 VTPTFQNPT-GVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYV 310 (459)
T ss_pred ECCCCCCCC-CCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeee
Confidence 998 89999 9999999999999999999999999999871 12222222344 9999999987 888999
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
+.++++++
T Consensus 311 v~p~~~~~ 318 (459)
T COG1167 311 VAPPELIE 318 (459)
T ss_pred eCCHHHHH
Confidence 99887764
No 289
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.77 E-value=1.3e-17 Score=150.45 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=133.4
Q ss_pred cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413 80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG 159 (285)
Q Consensus 80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~ 159 (285)
.++..+++.+.+.....++..+...++++.+++++|.+.+++++||++|+..++.++..++||+|+++..+|..+....
T Consensus 10 ~~~e~~a~~~~~~~~~~~~~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~- 88 (376)
T TIGR02379 10 TGQELEYIAEAISEGKLSGDGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAF- 88 (376)
T ss_pred CHHHHHHHHHHHHcCCccCCcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH-
Confidence 3445667776655444444567789999999999999999999999999999998873368999999988876553322
Q ss_pred cccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413 160 ASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238 (285)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g 238 (285)
...|.+++.++.+++ +.+|++++++++++ ++++|+..+ ++ |...+ +++|.++|++||
T Consensus 89 --------~~~G~~~v~vd~d~~~~~~d~~~le~~i~~-------~tk~Iip~~---~~-G~~~d---~~~I~~la~~~~ 146 (376)
T TIGR02379 89 --------VLRGAKIVFVDIRPDTMNIDETLIESAITH-------RTKAIVPVH---YA-GVACD---MDTIMALANKHQ 146 (376)
T ss_pred --------HHcCCEEEEEecCCCcCCCCHHHHHHhcCc-------CceEEEEeC---CC-CCccC---HHHHHHHHHHCC
Confidence 234888888887655 57899999999987 789987544 45 88899 899999999999
Q ss_pred CeEEEeCccCChh---h--hcccCCeEEEecc--cccCc-ceeEEee-cCccccc
Q psy5413 239 IPVHMDGARLPLA---E--VCASVDTVMFCLS--KGLGA-PVGSILA-GPEEFIQ 284 (285)
Q Consensus 239 i~li~Dea~~~~~---~--~~~~~dv~~~s~s--K~l~~-p~gg~~~-~~~~~i~ 284 (285)
+++|+|++|+... . .....|+.++|++ |.++. +.||+++ .++++.+
T Consensus 147 i~vIeDaa~~~g~~~~~~~~g~~~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~ 201 (376)
T TIGR02379 147 LFVIEDAAQGVMSTYKGRALGSIGHLGTFSFHETKNYTSGGEGGALLINDQAFIE 201 (376)
T ss_pred CEEEEECccccCCccCCcccCCCCCEEEEeCCCCCcCcccCCceEEEECCHHHHH
Confidence 9999999987211 1 1122355566654 55543 4666654 4566553
No 290
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.77 E-value=4.9e-18 Score=152.55 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=136.7
Q ss_pred CCeeeeeccCCcCCC-cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHc----C---C--CcEEEcCChHHHHHHHHH
Q psy5413 65 NIRTVDIRSDTISKP-TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLA----G---K--EAAIFVPSGTMGNLIAIM 134 (285)
Q Consensus 65 ~~~~~~~~~~~~~~~-~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~----g---~--~~~~~~~~Gs~a~~~al~ 134 (285)
+..+++|..+++..+ .+.+.+++.+.. ....|....+..+|++.+++++ | . +.+++++|+++++..++.
T Consensus 20 ~~~~i~l~~~~p~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~ 98 (357)
T TIGR03539 20 PDGIVDLSVGTPVDPVPPLIRAALAAAA-DAPGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPT 98 (357)
T ss_pred CCCeEEccCCCCCCCCCHHHHHHHHHHH-hhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHH
Confidence 456789998877654 567788876543 3445665555678888888876 3 2 345788888999988887
Q ss_pred HccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEeccc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~ 214 (285)
++..++||.|++++++|...... . ...|.+++.++ +++.++ .. ++++|++++|+
T Consensus 99 ~l~~~~gd~Vl~~~p~y~~~~~~---~------~~~g~~~~~v~-------~~~~l~---~~-------~~~~v~~~~p~ 152 (357)
T TIGR03539 99 LLGLGPGDTVVIPELAYPTYEVG---A------LLAGATPVAAD-------DPTELD---PV-------GPDLIWLNSPG 152 (357)
T ss_pred HHcCCCCCEEEECCCCcHHHHHH---H------HhcCCEEeccC-------ChhhcC---cc-------CccEEEEeCCC
Confidence 76336999999998887544321 1 23477766653 233222 12 78999999999
Q ss_pred CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhcc-----cC-C-eEEEecccccC--cceeEEeec
Q psy5413 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVCA-----SV-D-TVMFCLSKGLG--APVGSILAG 278 (285)
Q Consensus 215 n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~~-----~~-d-v~~~s~sK~l~--~p~gg~~~~ 278 (285)
||| |.+++.+++++|+++|++||+++|+||+|..+. .+.. .. . +++.|+||.++ |.++|++++
T Consensus 153 NPt-G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~ 231 (357)
T TIGR03539 153 NPT-GRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAG 231 (357)
T ss_pred CCc-CccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEec
Confidence 999 999999999999999999999999999986211 1110 11 2 44899999864 478889998
Q ss_pred Cccccc
Q psy5413 279 PEEFIQ 284 (285)
Q Consensus 279 ~~~~i~ 284 (285)
++++++
T Consensus 232 ~~~~~~ 237 (357)
T TIGR03539 232 DPALVA 237 (357)
T ss_pred CHHHHH
Confidence 887654
No 291
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.77 E-value=1.2e-17 Score=151.00 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=133.1
Q ss_pred HHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccc
Q psy5413 83 MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ 162 (285)
Q Consensus 83 v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~ 162 (285)
-.+++.+.+.....++..+...++++.+++++|.+.+++++||++|+..++.++..++||+|+++..+|..+.....
T Consensus 13 ~~~~~~~~l~~~~~~g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~--- 89 (375)
T PRK11706 13 ELDYIQQAMSSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFV--- 89 (375)
T ss_pred HHHHHHHHHHcCCccCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHH---
Confidence 35556555544445555677899999999999999999999999999888876644689999999988876544222
Q ss_pred ccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE
Q psy5413 163 TSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241 (285)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l 241 (285)
..|.+++.++.+++ +.+|++++++++++ ++++|++.++ + |...+ +++|.++|++||+++
T Consensus 90 ------~~G~~~v~~d~d~~~~~~d~~~le~~i~~-------~tk~i~~~~~---~-G~~~~---~~~i~~la~~~~i~v 149 (375)
T PRK11706 90 ------LRGAKIVFVDIRPDTMNIDETLIEAAITP-------KTRAIVPVHY---A-GVACE---MDTIMALAKKHNLFV 149 (375)
T ss_pred ------HcCCEEEEEecCCCcCCcCHHHHHHhcCC-------CCeEEEEeCC---C-CCccC---HHHHHHHHHHcCCEE
Confidence 34888888887654 46899999999987 7899987654 4 78888 899999999999999
Q ss_pred EEeCccCChh-----hhcccCCeEEEecc--cccCcc-eeEEeecCcccc
Q psy5413 242 HMDGARLPLA-----EVCASVDTVMFCLS--KGLGAP-VGSILAGPEEFI 283 (285)
Q Consensus 242 i~Dea~~~~~-----~~~~~~dv~~~s~s--K~l~~p-~gg~~~~~~~~i 283 (285)
|+|++|+... ......|+.++|++ |.++.. .|++++.++++.
T Consensus 150 IeD~a~a~g~~~~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~ 199 (375)
T PRK11706 150 VEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALI 199 (375)
T ss_pred EEECccccccccCCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHH
Confidence 9999987221 11223466677766 999764 455666566654
No 292
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.77 E-value=8.3e-18 Score=151.75 Aligned_cols=185 Identities=19% Similarity=0.229 Sum_probs=133.6
Q ss_pred CcHHHHHHHHhccc---CC-CCcc-CChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccc-----cCCCeEEe
Q psy5413 79 PTMEMKNYMFNCEV---GD-DVYL-EDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCD-----RRDSEIIV 146 (285)
Q Consensus 79 ~~~~v~~a~~~~~~---~~-~~y~-~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~-----~~g~~vi~ 146 (285)
+.|.+.+++.+... +. ..|. ......++++.+++++|.+. .+++++|++++..++.++.. .+|++|++
T Consensus 32 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~ 111 (373)
T TIGR03812 32 PHPIAVKAYDMFIETNLGDPGLFPGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIV 111 (373)
T ss_pred chHHHHHHHHHHhhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 46666666554422 21 1222 23446889999999999764 48899999999888876542 35678999
Q ss_pred cCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCce-EEEEEecccCCCCeeeCCHH
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST-SLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~-~~v~i~~~~n~~gG~~~~~~ 225 (285)
++..|.+.... . +..|.+++.++.++++.+|++++++++++ ++ ++++++ ++|++ |.+.|
T Consensus 112 ~~~~h~~~~~~---~------~~~G~~~~~v~~~~~~~~d~~~l~~~l~~-------~~~~vv~~~-~~~~t-G~~~~-- 171 (373)
T TIGR03812 112 PESAHFSFEKA---A------EMLGLELRYAPLDEDYTVDVKDVEDLIDD-------NTIGIVGIA-GTTEL-GQIDD-- 171 (373)
T ss_pred CCcchHHHHHH---H------HHcCCeEEEEeeCCCCCcCHHHHHHHHhh-------CcEEEEEEC-CCCCC-CccCC--
Confidence 99888765432 2 34488889998877788999999999977 44 445554 67888 89999
Q ss_pred HHHHHHHHHHHcCCeEEEeCccCChh-h----------h---cccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413 226 WLRELKARCQEHNIPVHMDGARLPLA-E----------V---CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea~~~~~-~----------~---~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++|+++|+++|+++|+|++|+... . . ..++|.++++.+||+.+ +.|++++.++++++
T Consensus 172 -~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~ 245 (373)
T TIGR03812 172 -IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLK 245 (373)
T ss_pred -HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHh
Confidence 9999999999999999999997221 1 1 12567788999997544 56777777776653
No 293
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.77 E-value=1e-17 Score=150.49 Aligned_cols=212 Identities=19% Similarity=0.285 Sum_probs=141.4
Q ss_pred CCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC--CCCccCChhHHHHHHHHHhH----cCCC-
Q psy5413 45 LSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG--DDVYLEDPTCKELQEKAAKL----AGKE- 117 (285)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~----~g~~- 117 (285)
...+++..|.+|.+...... ....+.+...+.....+ ...+...|...++|+.+.++ +|.+
T Consensus 29 ~l~~~~~~~~~P~~~~~~~~------------~~~~~~i~~~~l~~~~n~n~~~~~~~P~~~~~E~~vi~~l~~l~g~~~ 96 (373)
T PF00282_consen 29 ILAPGVTHWHHPRFFGFVPG------------GPSPASILADLLASALNQNGFTWEASPAATEIEREVIRWLADLFGLPE 96 (373)
T ss_dssp HTHGCS-TTTSTTBESSSHT--------------CHHHHHHHHHHHHHT-BTTSTTTSHHHHHHHHHHHHHHHHHTTGSG
T ss_pred HhhccCCCCCChhHhhhccC------------CccHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHhCCcc
Confidence 34567778887754444332 22344555555444443 33455678888888776554 5655
Q ss_pred --------cEEEcCChHHHHHHHHHHccccC-------C-----C-eEEecCCcceeeecccccccccccccccceeeee
Q psy5413 118 --------AAIFVPSGTMGNLIAIMTHCDRR-------D-----S-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176 (285)
Q Consensus 118 --------~~~~~~~Gs~a~~~al~~~~~~~-------g-----~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (285)
..+++++||++|..++.++.++. | + .+++++..|.+..++..+. |..++.
T Consensus 97 ~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l---------Glg~~~ 167 (373)
T PF00282_consen 97 SFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL---------GLGVRK 167 (373)
T ss_dssp GTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT---------TSEEEE
T ss_pred cccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee---------eeEEEE
Confidence 25999999999999998875321 2 2 4677888999887755555 777999
Q ss_pred eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----
Q psy5413 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----- 251 (285)
Q Consensus 177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----- 251 (285)
+|.++++.+|+++|+++|++... .+..+.+|+.+..+..+ |.+.| +++|+++|+++++|+|+|+++++..
T Consensus 168 I~~~~~~~md~~~L~~~l~~~~~-~g~~p~~vvat~Gtt~~-Ga~D~---l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~ 242 (373)
T PF00282_consen 168 IPTDEDGRMDIEALEKALEKDIA-NGKTPFAVVATAGTTNT-GAIDP---LEEIADICEKYNIWLHVDAAYGGSALLSPE 242 (373)
T ss_dssp E-BBTTSSB-HHHHHHHHHHHHH-TTEEEEEEEEEBS-TTT-SBB-S---HHHHHHHHHHCT-EEEEEETTGGGGGGHCT
T ss_pred ecCCcchhhhHHHhhhhhccccc-ccccceeeeccCCCccc-ccccC---HHHHhhhccccceeeeeccccccccccccc
Confidence 99988899999999999976432 22234455555555555 89999 9999999999999999999988421
Q ss_pred -----hhcccCCeEEEecccccCcc--eeEEeecCccc
Q psy5413 252 -----EVCASVDTVMFCLSKGLGAP--VGSILAGPEEF 282 (285)
Q Consensus 252 -----~~~~~~dv~~~s~sK~l~~p--~gg~~~~~~~~ 282 (285)
.-.+.+|.++.++|||++.| .|.+++.++..
T Consensus 243 ~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~ 280 (373)
T PF00282_consen 243 YRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSD 280 (373)
T ss_dssp TGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGG
T ss_pred ccccccccccccccccchhhhhcCCccceeEEeecccc
Confidence 22367899999999999984 44555666544
No 294
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.76 E-value=1.2e-17 Score=150.64 Aligned_cols=194 Identities=18% Similarity=0.198 Sum_probs=134.4
Q ss_pred eeeeeccCCcCC--CcHHHHHHHHhcccC-----------C----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHH
Q psy5413 67 RTVDIRSDTISK--PTMEMKNYMFNCEVG-----------D----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129 (285)
Q Consensus 67 ~~~~~~~~~~~~--~~~~v~~a~~~~~~~-----------~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~ 129 (285)
++++|.++++-. .+|.+.+++.+.... . ..++..+.+.++|+.+++++|.+.++++++|+.|+
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~ 84 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYMAN 84 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHHHH
Confidence 568888766665 455555554433211 1 12235577999999999999999889999999999
Q ss_pred HHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEE
Q psy5413 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVC 209 (285)
Q Consensus 130 ~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~ 209 (285)
...+..+. ++++.|+++...|.++....... .+.. +.+ .+.|+++|++++++..+ ..+++.+|+
T Consensus 85 ~~~~~~~~-~~~d~ii~d~~~H~sv~~~~~~~--------~~~~-~~~-----~~~d~~~l~~~l~~~~~-~~~~~~~v~ 148 (370)
T PRK05937 85 LGLCAHLS-SVTDYVLWDEQVHISVVYSLSVI--------SGWH-QSF-----RHNDLDHLESLLESCRQ-RSFGRIFIF 148 (370)
T ss_pred HHHHHHhC-CCCCEEEEEhhhhHHHHHHHHHc--------CCce-EEe-----cCCCHHHHHHHHHhhhc-cCCCcEEEE
Confidence 86665543 46787888899998775532222 1222 223 24589999999975211 112467888
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-------c---ccCCeEEEecccccCcceeEEeec
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-------C---ASVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-------~---~~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
+++++|++ |.+.| +++|+++|+++|+++|+||+|+ +.... . .+.++++.|+||.+|+ .|+.++.
T Consensus 149 v~~v~s~~-G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~-~G~~vl~ 223 (370)
T PRK05937 149 VCSVYSFK-GTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGS-MGAALLS 223 (370)
T ss_pred EecCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhc-CceEEEc
Confidence 99999999 99999 9999999999999999999998 21110 1 2233568999999875 5555655
Q ss_pred Ccc
Q psy5413 279 PEE 281 (285)
Q Consensus 279 ~~~ 281 (285)
.++
T Consensus 224 ~~~ 226 (370)
T PRK05937 224 SSE 226 (370)
T ss_pred CHH
Confidence 554
No 295
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=1.4e-17 Score=147.42 Aligned_cols=180 Identities=18% Similarity=0.149 Sum_probs=138.8
Q ss_pred cHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc
Q psy5413 80 TMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG 159 (285)
Q Consensus 80 ~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~ 159 (285)
..+..+++.+.+.. ..+...+...++|+.+++++|.+.++.++|||.|+.++++++.-++||+||++..++..+.....
T Consensus 14 ~~~e~~~v~~vl~s-g~i~~G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~ 92 (374)
T COG0399 14 GEEELAAVQEVLKS-GWLTGGPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVL 92 (374)
T ss_pred chHHHHHHHHHHHc-CCeecChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHH
Confidence 34555666665542 22333678999999999999999999999999999999997655799999999888766644222
Q ss_pred cccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC
Q psy5413 160 ASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN 238 (285)
Q Consensus 160 ~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g 238 (285)
..|.+.+.+..++ .+.+|++.||++|++ +||+|+..+.. |..++ +++|.++|++||
T Consensus 93 ---------~~Ga~PVFvDid~~T~nid~~~ie~aIt~-------~tKAIipVhl~----G~~~d---m~~i~~la~~~~ 149 (374)
T COG0399 93 ---------LVGAKPVFVDIDPDTLNIDPDLIEAAITP-------RTKAIIPVHLA----GQPCD---MDAIMALAKRHG 149 (374)
T ss_pred ---------HcCCeEEEEecCCcccCCCHHHHHHHccc-------CCeEEEEehhc----cCCCC---HHHHHHHHHHcC
Confidence 3388888888764 478999999999998 79999998877 89999 999999999999
Q ss_pred CeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC-cccc
Q psy5413 239 IPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP-EEFI 283 (285)
Q Consensus 239 i~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~-~~~i 283 (285)
++||.|.+|+ +.. +-...+.++.+...|.++.--||.++++ +++.
T Consensus 150 l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela 202 (374)
T COG0399 150 LPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELA 202 (374)
T ss_pred CeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHH
Confidence 9999999988 211 1112233446777899887567766655 4544
No 296
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.76 E-value=1.1e-17 Score=148.78 Aligned_cols=181 Identities=14% Similarity=0.029 Sum_probs=130.6
Q ss_pred eeeeeccC-CcCCCcH-HHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 67 RTVDIRSD-TISKPTM-EMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 67 ~~~~~~~~-~~~~~~~-~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
.+++|+++ ++.++++ .+.+.. . ..|. .+ ..+|++.++++++.+.+++++|+++++..++. + .+||+|
T Consensus 21 ~~i~l~~ne~p~~~~~~~~~~~~---~---~~yp-~~-~~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~--~-~~gd~v 89 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPAIPADA---W---ARLP-ET-DDGLEAAARAYYGAPQLLPVAGSQAAIQALPR--L-RAPGRV 89 (330)
T ss_pred HheeecCCcCCCCCCCcccCHHH---H---HhCC-CC-hHHHHHHHHHHhCCCCEEECcCHHHHHHHHHH--c-cCCCEE
Confidence 45788765 6544442 322211 1 2243 22 27899999999999988999999999887753 3 589999
Q ss_pred EecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCH
Q psy5413 145 IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM 224 (285)
Q Consensus 145 i~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~ 224 (285)
+++++++....... +..|.+++.++. ++++++++ +++++++++|+||| |.+++.
T Consensus 90 ~v~~P~y~~~~~~~---------~~~g~~~~~v~~--------~~~~~~~~--------~~~~v~l~nP~NPT-G~~~s~ 143 (330)
T PRK05664 90 GVLSPCYAEHAHAW---------RRAGHQVRELDE--------AEVEAALD--------SLDVLVVVNPNNPT-GRRFDP 143 (330)
T ss_pred EEcCCChHHHHHHH---------HHcCCeEEEech--------hhHhhhhc--------CCCEEEEeCCcCCC-CCccCH
Confidence 99988875554322 344888888765 24555553 46788999999999 999999
Q ss_pred HHHHHHHHHHHHcCCeEEEeCccCCh------hhhcccCCe-EEEecccccCc--ceeEEeecCccccc
Q psy5413 225 QWLRELKARCQEHNIPVHMDGARLPL------AEVCASVDT-VMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 225 ~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~~~dv-~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+++++|+++|+++|+++|+||+|... ..+...-.+ ++.||||.++. .+.|++++++++++
T Consensus 144 ~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l~~ 212 (330)
T PRK05664 144 ARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPALLR 212 (330)
T ss_pred HHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeeccccccCCCcceEEEEeCHHHHH
Confidence 99999999999999999999998622 122222234 49999999874 67788888887764
No 297
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.76 E-value=1.4e-17 Score=143.25 Aligned_cols=177 Identities=20% Similarity=0.254 Sum_probs=138.9
Q ss_pred CcHHHHHHHHhcccCCCCcc--CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeec
Q psy5413 79 PTMEMKNYMFNCEVGDDVYL--EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE 156 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~~y~--~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~ 156 (285)
..++-..++-..-.-...|. .+|....||++|+.+.|--..+-+.||..|+..++..++ ++||+|+....-++-+..
T Consensus 38 ~d~~haa~lF~l~~~G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~la-~aGD~iVss~~LYGGT~~ 116 (426)
T COG2873 38 DDTDHAAALFGLKEPGNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNLA-GAGDNIVSSSKLYGGTYN 116 (426)
T ss_pred CCHHHHHHHhCCCcCCceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHhc-cCCCeeEeeccccCchHH
Confidence 44444444433222245554 789999999999999998888999999999999999988 599998875443332221
Q ss_pred -ccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHH
Q psy5413 157 -QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQ 235 (285)
Q Consensus 157 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~ 235 (285)
+...- ..+|.++..+..+ |++.++++|++ +||+|++|...||. +.+.| +++|.++||
T Consensus 117 lf~~tl------~~~Gi~v~fvd~~-----d~~~~~~aI~~-------nTkavf~EtigNP~-~~v~D---ie~ia~iAh 174 (426)
T COG2873 117 LFSHTL------KRLGIEVRFVDPD-----DPENFEAAIDE-------NTKAVFAETIGNPG-LDVLD---IEAIAEIAH 174 (426)
T ss_pred HHHHHH------HhcCcEEEEeCCC-----CHHHHHHHhCc-------ccceEEEEeccCCC-ccccC---HHHHHHHHH
Confidence 11111 3568888887653 79999999999 99999999999998 89999 999999999
Q ss_pred HcCCeEEEeCccCCh---hhhcccCCeEEEecccccCc---ceeEEeec
Q psy5413 236 EHNIPVHMDGARLPL---AEVCASVDTVMFCLSKGLGA---PVGSILAG 278 (285)
Q Consensus 236 ~~gi~li~Dea~~~~---~~~~~~~dv~~~s~sK~l~~---p~gg~~~~ 278 (285)
+||+++|+|...++. ..+..++|+|+.|.+||+|| -+||+++.
T Consensus 175 ~~gvpliVDNT~atpyl~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD 223 (426)
T COG2873 175 RHGVPLIVDNTFATPYLCRPIEHGADIVVHSATKYIGGHGTAIGGVIVD 223 (426)
T ss_pred HcCCcEEEecCCCcceecchhhcCCCEEEEeecccccCCccccceEEEe
Confidence 999999999998743 34456899999999999999 78888864
No 298
>PLN02672 methionine S-methyltransferase
Probab=99.76 E-value=1.3e-17 Score=164.09 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=145.4
Q ss_pred ccccCCeeeeeccCCcCC-CcHHHHHHHHhcccCCC-CccCChhHHHHHHHHHhHcCCC-----cEEEcCChHHHHHHHH
Q psy5413 61 LGKVNIRTVDIRSDTISK-PTMEMKNYMFNCEVGDD-VYLEDPTCKELQEKAAKLAGKE-----AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~-~y~~~~~~~~l~~~la~~~g~~-----~~~~~~~Gs~a~~~al 133 (285)
....+..++++..+.+.. +++.+++++.+...... .++.......+++.+++..|.+ .+++++++++++..++
T Consensus 692 ~~~~g~~vI~LsinE~d~ppPp~V~eAi~eal~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll 771 (1082)
T PLN02672 692 SGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLV 771 (1082)
T ss_pred cccCCCCEEEEeCCCCCCCCCHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHH
Confidence 334567889998665555 66789999887543222 2223344677788887776653 2455665566666777
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC--CCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK--DGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
.+++ ++||.|+++.+++....... ...|.+++.++..+ ++.+|++++++++++. +.++|+++
T Consensus 772 ~aLl-~pGD~VLVp~PtY~~Y~~~a---------~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~------~~~~I~L~ 835 (1082)
T PLN02672 772 LCCV-QEGGTLCFPAGSNGTYVSAA---------KFLKANFRRIPTKSSDGFKLTAKTLASTLETV------KKPWVYIS 835 (1082)
T ss_pred HHHc-CCCCEEEEeCCChHHHHHHH---------HHcCCEEEEEecccccCCCCCHHHHHHHhccC------CCCEEEEE
Confidence 8776 69999999988876554422 34488999998753 4678999999998651 23578888
Q ss_pred ccc-CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh------------hc---cc----CCeE-EEecccccCc
Q psy5413 212 NTH-NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE------------VC---AS----VDTV-MFCLSKGLGA 270 (285)
Q Consensus 212 ~~~-n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~------------~~---~~----~dv~-~~s~sK~l~~ 270 (285)
+|+ ||| |.+++.+++++|+++|++||++||+||+|..+.. .. .. ..++ +.|+||.++.
T Consensus 836 nPnhNPT-G~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~l 914 (1082)
T PLN02672 836 GPTINPT-GLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLS 914 (1082)
T ss_pred CcCCCCc-CccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhcc
Confidence 886 999 9999999999999999999999999999872111 11 11 1244 7899997665
Q ss_pred --ceeEEeecC-ccccc
Q psy5413 271 --PVGSILAGP-EEFIQ 284 (285)
Q Consensus 271 --p~gg~~~~~-~~~i~ 284 (285)
.+.|+++++ +++++
T Consensus 915 pGLRIGylIap~~eLi~ 931 (1082)
T PLN02672 915 GGHEFGFLALNDSVLID 931 (1082)
T ss_pred HHHHheeEEeCCHHHHH
Confidence 677788775 43543
No 299
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.76 E-value=1.1e-17 Score=152.70 Aligned_cols=195 Identities=15% Similarity=0.099 Sum_probs=136.4
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc---CC--CcEEEcCChHHHHHHH
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA---GK--EAAIFVPSGTMGNLIA 132 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~---g~--~~~~~~~~Gs~a~~~a 132 (285)
+..+++|..+.+.. +.+.+.+++.+.... ...|++.+...+|++.+++++ +. +.+++++|+++++...
T Consensus 32 ~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l 111 (402)
T TIGR03542 32 SADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRL 111 (402)
T ss_pred CCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHH
Confidence 35678888777665 566788887765432 134766677899999999975 32 3467888888888875
Q ss_pred HHHccccCCCeEEecCCcceeeecccccccccccccccce-----------eeeeeecCCC--CCCCHHHHHHHhccccc
Q psy5413 133 IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV-----------LMRGVTNQKD--GTFDLDEMEAKFSTADN 199 (285)
Q Consensus 133 l~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~--~~~d~~~l~~~i~~~~~ 199 (285)
+ .++ .+|++|++++++|....... ...|. +++.++.+++ ...|+++ ..
T Consensus 112 ~-~l~-~~gd~Vlv~~P~y~~~~~~~---------~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~--- 172 (402)
T TIGR03542 112 Q-SLF-GSDNTVAVQDPVYPAYVDSN---------VMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE-----EP--- 172 (402)
T ss_pred H-Hhc-CCCCEEEEeCCCCcchHHHH---------HHcCCccccccccccceEEEeecchhhCCCCCccc-----cC---
Confidence 4 445 58999999888765443321 22355 6777775432 2233211 12
Q ss_pred ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------hhc--cc-CC--eEEEecccc
Q psy5413 200 IHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------EVC--AS-VD--TVMFCLSKG 267 (285)
Q Consensus 200 ~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------~~~--~~-~d--v~~~s~sK~ 267 (285)
++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+. .+. .. .+ +++.|+||.
T Consensus 173 ----~~~~i~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 247 (402)
T TIGR03542 173 ----KIDIIYLCSPNNPT-GTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKT 247 (402)
T ss_pred ----CceEEEEeCCCCCC-CccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccc
Confidence 68999999999999 999999999999999999999999999987211 111 11 12 338999998
Q ss_pred cCc--ceeEEeecCcccc
Q psy5413 268 LGA--PVGSILAGPEEFI 283 (285)
Q Consensus 268 l~~--p~gg~~~~~~~~i 283 (285)
+|. .+.|+++++++++
T Consensus 248 ~g~pGlRiG~~i~~~~l~ 265 (402)
T TIGR03542 248 AGFTGVRLGWTVVPKELT 265 (402)
T ss_pred cCCCCcceEEEEecHHHh
Confidence 864 6778888877665
No 300
>PRK02769 histidine decarboxylase; Provisional
Probab=99.76 E-value=1.1e-17 Score=150.50 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413 102 TCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176 (285)
Q Consensus 102 ~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (285)
...++.+.+++++|.+ . ++|+++||++|..++.++.. .++++|++++..|.+....... .|.....
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~---------lg~~~~~ 136 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARL---------LRIKSRV 136 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHH---------cCCCCce
Confidence 4557777788888864 2 48999999999998877642 3567899999999887664333 3666667
Q ss_pred eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC---CeEEEeCccCCh---
Q psy5413 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN---IPVHMDGARLPL--- 250 (285)
Q Consensus 177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g---i~li~Dea~~~~--- 250 (285)
++..+++.+|+++|+++|+++ +.+|.+|+++.+++.+ |.+.| +++|+++|++|| +|+|+|+++++.
T Consensus 137 V~~~~~g~id~~~L~~~i~~~----~~~t~lvv~t~gtt~t-G~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p 208 (380)
T PRK02769 137 ITSLPNGEIDYDDLISKIKEN----KNQPPIIFANIGTTMT-GAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILP 208 (380)
T ss_pred eccCCCCcCcHHHHHHHHHhC----CCCcEEEEEEeCCCCC-cccCC---HHHHHHHHHHhCCCceEEEEEecccceeec
Confidence 777678889999999999872 3358999999999999 99999 999999999998 699999998821
Q ss_pred -------hhhcccCCeEEEecccccCccee-EEeecCccc
Q psy5413 251 -------AEVCASVDTVMFCLSKGLGAPVG-SILAGPEEF 282 (285)
Q Consensus 251 -------~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~ 282 (285)
.....++|.++++.||++++|.| |++..+++.
T Consensus 209 ~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~ 248 (380)
T PRK02769 209 FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKY 248 (380)
T ss_pred ccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhh
Confidence 12234789999999999997543 444444443
No 301
>PLN03032 serine decarboxylase; Provisional
Probab=99.75 E-value=1.4e-17 Score=149.11 Aligned_cols=166 Identities=20% Similarity=0.224 Sum_probs=127.7
Q ss_pred hhHHHHHHHHHhHcCCCc----EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeecccccccccccccccceeee
Q psy5413 101 PTCKELQEKAAKLAGKEA----AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMR 175 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~----~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~ 175 (285)
....++.+.+++++|.+. ++|++|||+||..++.++... ++..++++...|.+..++.... +..+.
T Consensus 66 ~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~l---------g~~~~ 136 (374)
T PLN03032 66 QFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY---------RMEAV 136 (374)
T ss_pred HHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHc---------CCCCe
Confidence 446677778888888642 399999999999999887532 3457888999998887644333 66677
Q ss_pred eeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcC-----CeEEEeCccCCh
Q psy5413 176 GVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHN-----IPVHMDGARLPL 250 (285)
Q Consensus 176 ~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~g-----i~li~Dea~~~~ 250 (285)
.+|.++++.+|+++|+++|+++ ..++.+|+++..++.+ |.+.| +++|+++|++|| +|+|+|+++++.
T Consensus 137 ~V~~d~~g~id~~~L~~~i~~~----~~~~~lvv~tagtt~t-G~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~ 208 (374)
T PLN03032 137 KVPTLPSGEIDYDDLERALAKN----RDKPAILNVNIGTTVK-GAVDD---LDRILRILKELGYTEDRFYIHCDGALFGL 208 (374)
T ss_pred EeeeCCCCcCcHHHHHHHHHHc----CCCCEEEEEEecCcCC-ccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhh
Confidence 8888888999999999999762 2257788888888888 99999 999999999997 589999998721
Q ss_pred -h---------hhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413 251 -A---------EVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI 283 (285)
Q Consensus 251 -~---------~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i 283 (285)
. .....+|.++++.||+++.|.| |+++.+++++
T Consensus 209 ~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~ 252 (374)
T PLN03032 209 MMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHV 252 (374)
T ss_pred hhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhh
Confidence 1 1224689999999999887655 5555544443
No 302
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.75 E-value=3.8e-18 Score=153.04 Aligned_cols=189 Identities=19% Similarity=0.163 Sum_probs=135.5
Q ss_pred eeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-C
Q psy5413 67 RTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-S 142 (285)
Q Consensus 67 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~ 142 (285)
..++|..+ ++..+++.+ .+ .+...|.. +...+|++.+++++|.+. +++++|+++++..++.+++ ++| +
T Consensus 32 ~~~~l~~ne~~~~~~~~~--~~----~~~~~Yp~-~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~-~~g~d 103 (354)
T PRK04635 32 GDIWINANESPFNNEYKL--DL----ARLNRYPE-CQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC-EPGQD 103 (354)
T ss_pred CcEEeeCCCCCCCCChhh--hh----HHhccCCC-CCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc-CCCCC
Confidence 44677644 433444432 11 12245653 347999999999998654 6888889999999999887 577 8
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+|++.++++..... .. ...|.+++.+|.++++.+|++.++ .+ + ++++|++++|+||| |.++
T Consensus 104 ~vlv~~P~y~~y~~---~~------~~~g~~v~~v~~~~~~~~~~~~l~-~~-~-------~~~li~i~nP~NPT-G~~~ 164 (354)
T PRK04635 104 SIACFGPTYGMYAI---SA------ETFNVGVKALPLTADYQLPLDYIE-QL-D-------GAKLVFICNPNNPT-GTVI 164 (354)
T ss_pred eEEEcCCChHHHHH---HH------HHcCCEEEEEecCCCCCCCHHHHH-hc-c-------CCCEEEEeCCCCCC-CccC
Confidence 89988887653322 22 345889999988666778998886 33 4 68999999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcc-cCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EVCA-SVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~-~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.+++++|++.|+ +++||+||+|..+. .+.. .-. +++.|+||+++. .+.|+++.++++++
T Consensus 165 ~~~~l~~l~~~~~--~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~~~ 234 (354)
T PRK04635 165 DRADIEQLIEMTP--DAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTLSKAFALAGARCGFTLANEELIE 234 (354)
T ss_pred CHHHHHHHHHhCC--CcEEEEeCchHhhccCcchHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHHHH
Confidence 9888888887765 49999999987221 1111 223 348999999873 66788888887764
No 303
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.75 E-value=2.3e-17 Score=146.94 Aligned_cols=162 Identities=22% Similarity=0.188 Sum_probs=132.0
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-cccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|....|++.++++.|.+.++.++||..|+..++..++ ++||+|++.+..++.++.. ..+. ..+|+++..+
T Consensus 61 ~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll-~~GD~vl~~~~~YG~t~~~~~~~l------~~~gi~~~~~ 133 (396)
T COG0626 61 GNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLALL-KAGDHVLLPDDLYGGTYRLFEKIL------QKFGVEVTFV 133 (396)
T ss_pred CCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhc-CCCCEEEecCCccchHHHHHHHHH------HhcCeEEEEE
Confidence 578899999999999999999999999999999999887 6899999877655544432 1222 3578887766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
... +.+++++++.+. +|++|++|.|+||+ ..+.| |++|+++|+++|+.+++|....++ ..+.
T Consensus 134 d~~-----~~~~~~~~~~~~------~tk~v~lEtPsNP~-l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~PL~ 198 (396)
T COG0626 134 DPG-----DDEALEAAIKEP------NTKLVFLETPSNPL-LEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRPLE 198 (396)
T ss_pred CCC-----ChHHHHHHhccc------CceEEEEeCCCCcc-ccccc---HHHHHHHHHhcCCEEEEECCcccccccChhh
Confidence 542 566777777631 79999999999999 99999 999999999999999999998833 3445
Q ss_pred ccCCeEEEecccccCc---ceeEEeecCccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAGPEEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~~~~~ 282 (285)
-++|+++.|.+|.++| -++|+++++++.
T Consensus 199 ~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~ 229 (396)
T COG0626 199 LGADIVVHSATKYLGGHSDVLGGVVLTPNEE 229 (396)
T ss_pred cCCCEEEEeccccccCCcceeeeEEecChHH
Confidence 6899999999999999 677777765543
No 304
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.75 E-value=3.3e-17 Score=150.07 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=135.3
Q ss_pred eeeeeccCCcCC-Cc--HHHHHHHHhcccC------CCCccCChhHHHHHHHHHhHc----C--C--CcEEEcCChHHHH
Q psy5413 67 RTVDIRSDTISK-PT--MEMKNYMFNCEVG------DDVYLEDPTCKELQEKAAKLA----G--K--EAAIFVPSGTMGN 129 (285)
Q Consensus 67 ~~~~~~~~~~~~-~~--~~v~~a~~~~~~~------~~~y~~~~~~~~l~~~la~~~----g--~--~~~~~~~~Gs~a~ 129 (285)
.+++|..+++.. +. +.+.+++.+.+.. ...|....+..+|++.+++++ | . +.+++++|+++++
T Consensus 31 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al 110 (416)
T PRK09440 31 GAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAF 110 (416)
T ss_pred CceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHH
Confidence 457888777654 22 3556666554332 135766566788999999986 3 2 3468888889999
Q ss_pred HHHHHHccc----cCCCeEEe-cCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCC
Q psy5413 130 LIAIMTHCD----RRDSEIIV-GDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 130 ~~al~~~~~----~~g~~vi~-~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
..++.+++. .+|+.|++ ..+++.......... ..+ ...+..++.++.+. .+.+|+++++ +.+
T Consensus 111 ~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~d~~~l~--~~~------- 178 (416)
T PRK09440 111 FYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEE--DLF-VSYRPNIELLPEGQFKYHVDFEHLH--IDE------- 178 (416)
T ss_pred HHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhcc--Cce-eecccccccccccccccCCCHHHcc--cCC-------
Confidence 999988774 25788888 566654332211000 000 11122333333211 2458888887 333
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----h--hhcc--cCC-eEEEeccccc-Cccee
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----A--EVCA--SVD-TVMFCLSKGL-GAPVG 273 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~--~~~~--~~d-v~~~s~sK~l-~~p~g 273 (285)
+++++++++|+||| |.+++.+++++|+++|++||+++|+||+|... . .... .-. +++.|+||.. .|.+.
T Consensus 179 ~~~~i~l~~P~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~pGlRi 257 (416)
T PRK09440 179 DTGAICVSRPTNPT-GNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATPLWNPNIILCMSLSKLGLPGVRC 257 (416)
T ss_pred CceEEEEecCCCCC-CccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCccccCCeEEEecccccCCCcceE
Confidence 67999999999999 99999999999999999999999999999721 1 1111 112 3489999962 23788
Q ss_pred EEeecCccccc
Q psy5413 274 SILAGPEEFIQ 284 (285)
Q Consensus 274 g~~~~~~~~i~ 284 (285)
|++++++++++
T Consensus 258 G~~i~~~~l~~ 268 (416)
T PRK09440 258 GIVIADEEIIE 268 (416)
T ss_pred EEEeCCHHHHH
Confidence 89988887764
No 305
>PLN02397 aspartate transaminase
Probab=99.75 E-value=2.4e-17 Score=151.14 Aligned_cols=195 Identities=13% Similarity=0.081 Sum_probs=133.1
Q ss_pred eeeeeccCC-cCC-CcH----HHHHHHHhccc-C-CCCccCChhHHHHHHHHHhHcC-CC-------cE----EEcCChH
Q psy5413 67 RTVDIRSDT-ISK-PTM----EMKNYMFNCEV-G-DDVYLEDPTCKELQEKAAKLAG-KE-------AA----IFVPSGT 126 (285)
Q Consensus 67 ~~~~~~~~~-~~~-~~~----~v~~a~~~~~~-~-~~~y~~~~~~~~l~~~la~~~g-~~-------~~----~~~~~Gs 126 (285)
..++++.+. ++. ..| .+.++..+... + ...|++..+..+|++.+++++. .. .+ +...+|+
T Consensus 49 ~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga 128 (423)
T PLN02397 49 VKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGS 128 (423)
T ss_pred ceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHH
Confidence 456777664 333 233 45555433322 2 2368888889999999999863 21 12 1223344
Q ss_pred HHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeec-C-CCCCCCHHHHHHHhcccccccCCc
Q psy5413 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN-Q-KDGTFDLDEMEAKFSTADNIHCAS 204 (285)
Q Consensus 127 ~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~-~~~~~d~~~l~~~i~~~~~~~~~~ 204 (285)
.++..++...+ .+||+|++++++|....... ...|.+++.++. . +++.+|++.+++.+... .++
T Consensus 129 ~~l~~~~~~~~-~pGd~Vlv~~P~y~~y~~~~---------~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~----~~~ 194 (423)
T PLN02397 129 LRLGAEFLARF-YPGSTIYIPNPTWGNHHNIF---------RDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA----PDG 194 (423)
T ss_pred HHHHHHHHHHh-CCCCEEEEeCCCchhHHHHH---------HHcCCeEEEeecccCcCCccCHHHHHHHHHhC----CCC
Confidence 44555555555 49999999999876554322 244888888876 2 24578999998888641 226
Q ss_pred eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------h---hcccC-CeE-EEecccccCc
Q psy5413 205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------E---VCASV-DTV-MFCLSKGLGA 270 (285)
Q Consensus 205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~---~~~~~-dv~-~~s~sK~l~~ 270 (285)
++++++.+|+||| |.+++.+++++|+++|++||+++|+||+|..+. . +.... .++ +.||||.++.
T Consensus 195 ~~~i~~~~P~NPT-G~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~ 273 (423)
T PLN02397 195 SFVLLHACAHNPT-GVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGL 273 (423)
T ss_pred CEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCC
Confidence 7899999999999 999999999999999999999999999987332 1 11112 244 8999999874
Q ss_pred --ceeEEe
Q psy5413 271 --PVGSIL 276 (285)
Q Consensus 271 --p~gg~~ 276 (285)
.+.|++
T Consensus 274 ~G~RvG~~ 281 (423)
T PLN02397 274 YGERVGAL 281 (423)
T ss_pred ccccceEE
Confidence 677776
No 306
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.74 E-value=3e-17 Score=146.09 Aligned_cols=188 Identities=13% Similarity=0.072 Sum_probs=134.5
Q ss_pred CCeeeeeccCCcCC-CcHHHHHHHHhcccC-C-CCccCChhHHHHHHHHHhHcC-----CCcEEEcCChHHHHHHHHHHc
Q psy5413 65 NIRTVDIRSDTISK-PTMEMKNYMFNCEVG-D-DVYLEDPTCKELQEKAAKLAG-----KEAAIFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 65 ~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~-~-~~y~~~~~~~~l~~~la~~~g-----~~~~~~~~~Gs~a~~~al~~~ 136 (285)
++.+++|..+.+.. +++.+++++.+.... . ..|. ++...+|++.++++++ .+.+++++|+++++..++.++
T Consensus 18 ~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~-~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~ 96 (335)
T PRK14808 18 KRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYY-DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF 96 (335)
T ss_pred CCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCC-CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh
Confidence 45778888655444 677899998775543 2 3344 4568899999999987 234688888899999988775
Q ss_pred cccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 137 CDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 137 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
+.|++.+++|....... ...|.+++.++.++++.++... + . ++++|++++|+||
T Consensus 97 -----d~v~v~~P~y~~~~~~~---------~~~g~~~~~v~~~~~~~~~~~~----~-~-------~~~~i~i~nP~NP 150 (335)
T PRK14808 97 -----DRSVFFPPTYSCYRIFA---------KAVGAKFLEVPLTKDLRIPEVN----V-G-------EGDVVFIPNPNNP 150 (335)
T ss_pred -----CcEEECCCCHHHHHHHH---------HHcCCeEEEecCCCcCCCChhH----c-c-------CCCEEEEeCCCCC
Confidence 45888888775544322 3458899999886665444221 2 2 4589999999999
Q ss_pred CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
| |.+++.+++++|+ +++++||+||+|..+. ...... .++ +.|+||.++. .+.|++++++++++
T Consensus 151 T-G~~~s~~~l~~l~----~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~ 222 (335)
T PRK14808 151 T-GHVFEREEIERIL----KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFID 222 (335)
T ss_pred C-CCCcCHHHHHHHH----hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHH
Confidence 9 9999977776665 4899999999987321 111222 344 8999999883 77789998887764
No 307
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.74 E-value=4e-17 Score=151.98 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=125.2
Q ss_pred CCccCChhHHHHHHHHHhHc----C-C--------------CcEEEcCChHHHHHHHHHHccccC---------------
Q psy5413 95 DVYLEDPTCKELQEKAAKLA----G-K--------------EAAIFVPSGTMGNLIAIMTHCDRR--------------- 140 (285)
Q Consensus 95 ~~y~~~~~~~~l~~~la~~~----g-~--------------~~~~~~~~Gs~a~~~al~~~~~~~--------------- 140 (285)
..+..+|...++|+.+.+++ + . ..++++++||+||..|+.++..+.
T Consensus 119 ~~~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl 198 (522)
T TIGR03799 119 VKIETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGL 198 (522)
T ss_pred ceeecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccc
Confidence 45557788889998887775 2 1 125899999999999999876421
Q ss_pred ----------CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 141 ----------DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 141 ----------g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
+..|++++..|.+..++..+. .....+++.+|.++++.+|+++|+++|+++.+. +.++-+|+.
T Consensus 199 ~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~l------glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~-g~~~~~vva 271 (522)
T TIGR03799 199 FAALKHYGYDGLAILVSERGHYSLGKAADVL------GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQ-NIKPLAIVG 271 (522)
T ss_pred hhhhhhccCCceEEEECCCchHHHHHHHHHc------CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHC-CCCcEEEEE
Confidence 124777889998887644433 111226888888888999999999999753222 112233333
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhh----------cccCCeEEEecccccCccee-EEe-ec
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEV----------CASVDTVMFCLSKGLGAPVG-SIL-AG 278 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~----------~~~~dv~~~s~sK~l~~p~g-g~~-~~ 278 (285)
...++.+ |.+.| |++|+++|+++|+|+|+|++|++...+ .+++|+++++.|||+++|.| |++ +.
T Consensus 272 taGtt~t-GaiDp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr 347 (522)
T TIGR03799 272 VAGTTET-GNIDP---LDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFK 347 (522)
T ss_pred EecCcCC-CCcCC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEe
Confidence 3344455 99999 999999999999999999999832211 14789999999999999765 444 44
Q ss_pred Cccc
Q psy5413 279 PEEF 282 (285)
Q Consensus 279 ~~~~ 282 (285)
++++
T Consensus 348 ~~~~ 351 (522)
T TIGR03799 348 DPAL 351 (522)
T ss_pred CHHH
Confidence 4443
No 308
>PRK07908 hypothetical protein; Provisional
Probab=99.74 E-value=3.3e-17 Score=146.72 Aligned_cols=191 Identities=13% Similarity=0.075 Sum_probs=135.5
Q ss_pred CCeeeeeccCCc-CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCC
Q psy5413 65 NIRTVDIRSDTI-SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRD 141 (285)
Q Consensus 65 ~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g 141 (285)
+..++||..+.. ..+++.+++++.+.......|.......++++.++++++.+ .+++++|+++++..++. + +++
T Consensus 21 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~--l-~~~ 97 (349)
T PRK07908 21 GPGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR--L-RPR 97 (349)
T ss_pred CCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh--c-CCC
Confidence 457899986554 45677899998876544445765557889999999999754 45899999999988887 4 355
Q ss_pred CeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413 142 SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221 (285)
Q Consensus 142 ~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~ 221 (285)
+ +++..+++..... .. +..|.+++.++.++++.+|++++ ++ +++++++++|+||| |.+
T Consensus 98 ~-viv~~P~y~~~~~---~~------~~~G~~i~~v~~~~~~~~d~~~l----~~-------~~~~i~l~np~NPT-G~~ 155 (349)
T PRK07908 98 R-AAVVHPSFTEPEA---AL------RAAGIPVHRVVLDPPFRLDPAAV----PD-------DADLVVIGNPTNPT-SVL 155 (349)
T ss_pred e-EEEeCCCChHHHH---HH------HHcCCEEEeeccCcccCcChhHh----cc-------CCCEEEEcCCCCCC-CCC
Confidence 4 5555555443322 22 34588999998865566787743 34 67899999999999 999
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhc--ccCCeE-EEecccccC--cceeEEeecCccccc
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVC--ASVDTV-MFCLSKGLG--APVGSILAGPEEFIQ 284 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~--~~~dv~-~~s~sK~l~--~p~gg~~~~~~~~i~ 284 (285)
++. ++|.++|+ ++.++|+||+|..+. .+. ...+++ +.|+||.++ |.+.|+++.++++++
T Consensus 156 ~~~---~~l~~l~~-~~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~ 224 (349)
T PRK07908 156 HPA---EQLLALRR-PGRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLA 224 (349)
T ss_pred cCH---HHHHHHHh-cCCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHH
Confidence 995 45666675 578999999986211 111 122444 779999876 477889988877764
No 309
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.74 E-value=1.7e-17 Score=149.28 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=119.7
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
++|...+|++.++++. .+..+++.+|++|+..++.+++ ++||+|++.++.|..+.... ... ...|++++.+
T Consensus 49 ~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all-~~Gd~Vl~~~~~y~~~~~~~~~~l------~~~G~~v~~v 120 (366)
T PRK07582 49 SNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALL-RPGDTVVVPADGYYQVRALAREYL------APLGVTVREA 120 (366)
T ss_pred CCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhc-CCCCEEEEeCCCcHhHHHHHHHHH------hcCeEEEEEE
Confidence 5778999999999999 5678889999999999998876 69999999776654432211 011 2358888888
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---Chhhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PLAEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~~~~~ 254 (285)
+..+.. + .+.+ ++++|++++|+||+ |.+.+ +++|+++|+++|+++++|++|. +...+.
T Consensus 121 ~~~~~~----~----~~~~-------~t~lV~le~p~NPt-g~v~d---i~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~ 181 (366)
T PRK07582 121 PTAGMA----E----AALA-------GADLVLAETPSNPG-LDVCD---LAALAAAAHAAGALLVVDNTTATPLGQRPLE 181 (366)
T ss_pred CCCChH----H----Hhcc-------CceEEEEECCCCCC-CCccC---HHHHHHHHHHcCCEEEEECCCCCccccCchh
Confidence 763221 1 2223 78999999999999 88888 9999999999999999999986 222333
Q ss_pred ccCCeEEEecccccCc---ceeEEeec-Ccccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEFI 283 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~i 283 (285)
.++|+++.|++|+++| .++|+++. +++++
T Consensus 182 ~g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~ 214 (366)
T PRK07582 182 LGADLVVASDTKALTGHSDLLLGYVAGRDPELM 214 (366)
T ss_pred cCCcEEEecccccccCCCCeeEEEEEcCcHHHH
Confidence 4789999999999987 34677775 45544
No 310
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.74 E-value=4.8e-17 Score=146.26 Aligned_cols=193 Identities=12% Similarity=0.034 Sum_probs=135.7
Q ss_pred eeeeeccC-CcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 67 RTVDIRSD-TISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 67 ~~~~~~~~-~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
.+++|..+ ++..+++.+.+++.+.......|.. +...+|++.++++++.+ .+++++|+++++..++.++. +|+.
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~-~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l~--~g~~ 99 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSALRHYPD-PDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGRELA--QLRA 99 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC-cCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC--CCCe
Confidence 56888865 6666788999998765544445653 44679999999998654 46888888999998888743 5788
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCCCC-----CCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGT-----FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g 218 (285)
|+++++++..... .. ...|.+++.++.++++. .+++++++.. . +++++++++|+|||
T Consensus 100 vlv~~P~y~~~~~---~~------~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~l~nP~NPT- 161 (360)
T PRK07392 100 VYLITPAFGDYRR---AL------RAFGATVKELPLPLDQPSPGLTLRLQTLPPQL-T-------PNDGLLLNNPHNPT- 161 (360)
T ss_pred EEEECCCcHHHHH---HH------HHcCCeEEEEecccccCCcccccCHHHHHHhc-c-------CCCEEEEeCCCCCC-
Confidence 9988887654433 22 34588998888754432 3566655443 2 57899999999999
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---------hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---------EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
|.+++. ++|.++++++++ +|+||+|..+. ...... .++ +.|+||.++. .+.|+++.++++++
T Consensus 162 G~~~~~---~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~ 236 (360)
T PRK07392 162 GKLWSR---EAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQ 236 (360)
T ss_pred CCCcCH---HHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHH
Confidence 899994 556666778885 66799987221 111222 344 8999998873 77888888777654
No 311
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.74 E-value=4.1e-17 Score=160.11 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=137.2
Q ss_pred hhHHHHHHHHHhHcCCCcEEEcCChH----HHHHHHHHHccccCCC----eEEecCCcceeeecccccccccccccccce
Q psy5413 101 PTCKELQEKAAKLAGKEAAIFVPSGT----MGNLIAIMTHCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~~~~~~~Gs----~a~~~al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..+.++++.+++++|.+.+.|+.+++ +++..+++.+...+|+ +||++...|.+......+ .|.
T Consensus 568 ~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~---------~G~ 638 (993)
T PLN02414 568 EMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM---------CGM 638 (993)
T ss_pred HHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH---------CCC
Confidence 44789999999999999888888877 8999999988754477 788899999876542223 489
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---- 248 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---- 248 (285)
+++.++.++++.+|+++|+++|++ +.+++++|++++|+|.+ |...| +++|+++||++|+++++|.++.
T Consensus 639 ~vv~v~~d~~G~vDle~L~~~i~~----~~~~ta~V~vt~pSn~g-g~e~~---I~eI~~iah~~Galv~vDgAq~~a~~ 710 (993)
T PLN02414 639 KIVVVGTDAKGNINIEELRKAAEA----HKDNLAALMVTYPSTHG-VYEEG---IDEICDIIHDNGGQVYMDGANMNAQV 710 (993)
T ss_pred EEEEeccCCCCCcCHHHHHHHHhc----cCCCeEEEEEECCCccc-cccch---HHHHHHHHHHcCCEEEEEecCHHhcc
Confidence 999999878889999999999986 33379999999999997 88888 9999999999999999999986
Q ss_pred Chhh-hcccCCeEEEecccccCcce------eEEeecCcccc
Q psy5413 249 PLAE-VCASVDTVMFCLSKGLGAPV------GSILAGPEEFI 283 (285)
Q Consensus 249 ~~~~-~~~~~dv~~~s~sK~l~~p~------gg~~~~~~~~i 283 (285)
++.. ...++|+++++.||+|++|. .|+++.+++++
T Consensus 711 ~l~~p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~ 752 (993)
T PLN02414 711 GLTSPGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA 752 (993)
T ss_pred CcCCccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhc
Confidence 2222 24689999999999988755 57777777654
No 312
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.74 E-value=6.8e-17 Score=150.23 Aligned_cols=185 Identities=20% Similarity=0.217 Sum_probs=133.3
Q ss_pred CcHHHHHHHHhcc--cCCCCccC-------ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHH---ccccCCC---
Q psy5413 79 PTMEMKNYMFNCE--VGDDVYLE-------DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMT---HCDRRDS--- 142 (285)
Q Consensus 79 ~~~~v~~a~~~~~--~~~~~y~~-------~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~---~~~~~g~--- 142 (285)
..|.+.+++.+.. .+...|.+ .+...++++.+++++|.+.+ ++.++|+.+...++.+ +...+|+
T Consensus 82 ~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~~~~Gd~~~ 161 (481)
T PRK04366 82 YNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYHEARGDTKR 161 (481)
T ss_pred CCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHhhccCcCCC
Confidence 5667888877652 23445521 13366788888999998776 5556777666554332 2224554
Q ss_pred -eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee
Q psy5413 143 -EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221 (285)
Q Consensus 143 -~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~ 221 (285)
+|+++++.|.+..... ...|.+++.++.++++.+|+++|++++++ ++++|++++|+ ++ |.+
T Consensus 162 ~~Vlv~~~~hp~~~~~~---------~~~G~~vv~v~~~~~~~~D~e~L~~~i~~-------~t~~V~v~~Pn-~t-G~~ 223 (481)
T PRK04366 162 TEVIVPDSAHGTNPASA---------AMAGFKVVEIPSNEDGLVDLEALKAAVGE-------DTAALMLTNPN-TL-GLF 223 (481)
T ss_pred CEEEEcCCccHhHHHHH---------HHcCCEEEEeecCCCCCcCHHHHHhhccc-------CCeEEEEeCCC-Cc-ccc
Confidence 7999998887665432 34588999998877788999999999987 78999999988 77 654
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccC-C---hh-hhcccCCeEEEecccccCcc------eeEEeecCcccc
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARL-P---LA-EVCASVDTVMFCLSKGLGAP------VGSILAGPEEFI 283 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~-~~~~~~dv~~~s~sK~l~~p------~gg~~~~~~~~i 283 (285)
.+++++|+++|+++|+++++|+++. + .. ....++|+++++.||||++| .+|+++.+++++
T Consensus 224 --~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~ 294 (481)
T PRK04366 224 --ERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELA 294 (481)
T ss_pred --chHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhH
Confidence 2249999999999999999999986 2 11 22358999999999999864 446777666554
No 313
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.74 E-value=4.3e-17 Score=148.77 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=135.0
Q ss_pred CCCcHHHHHHHHhcccCC-CCcc----CChhHHHHHHHHHhHcCCC----cEE--EcCChHHHHHHHHHHcccc------
Q psy5413 77 SKPTMEMKNYMFNCEVGD-DVYL----EDPTCKELQEKAAKLAGKE----AAI--FVPSGTMGNLIAIMTHCDR------ 139 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~-~~y~----~~~~~~~l~~~la~~~g~~----~~~--~~~~Gs~a~~~al~~~~~~------ 139 (285)
+.++|++.+++.+..... ..+. ......++++.+++++|.+ ... ++++||+||..++.++..+
T Consensus 51 t~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 51 TWMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888876655311 1111 1144566667778888876 233 4799999999999776421
Q ss_pred -CC-----CeEEecCCcceeeecccccccccccccccceeeeeeecCCC-CCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 140 -RD-----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD-GTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 140 -~g-----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
.| ..|++++..|.++.+.... .|.++..+|.+++ +.+|+++|+++|++ ++.+|++..
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~---------lg~~v~~i~~d~~~~~vd~~~L~~~i~~-------~t~lV~~t~ 194 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARY---------FDVELREVPMDPGRYVIDPEQVVEAVDE-------NTIGVVCIL 194 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHH---------cCceeEEEecCCCceeeCHHHHHHHHhh-------CCeEEEEEe
Confidence 11 2588899999887664333 3778888888665 47999999999987 788999999
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHc------CCeEEEeCccCChh-----------hhcccCCeEEEecccccCccee-E
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEH------NIPVHMDGARLPLA-----------EVCASVDTVMFCLSKGLGAPVG-S 274 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~------gi~li~Dea~~~~~-----------~~~~~~dv~~~s~sK~l~~p~g-g 274 (285)
.++.+ |.+.| +++|+++|+++ |+|+|+|.+|++.. ...+++|.++++.|||+.+|.| |
T Consensus 195 g~t~t-G~idp---i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G 270 (431)
T TIGR01788 195 GTTYT-GEYED---VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG 270 (431)
T ss_pred CCCCC-cccCC---HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcE
Confidence 99999 99999 99999999999 99999999998211 1135678899999999867654 5
Q ss_pred Eee-cCc
Q psy5413 275 ILA-GPE 280 (285)
Q Consensus 275 ~~~-~~~ 280 (285)
++. .++
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 544 443
No 314
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.73 E-value=2.7e-17 Score=148.12 Aligned_cols=170 Identities=17% Similarity=0.132 Sum_probs=126.7
Q ss_pred CCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC-CeEEecCCcceeeecccccccccccccccc
Q psy5413 95 DVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 95 ~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
..|. ++...+|++.++++++.+. +++++|+++++..++.+++ .+| +.|+++++++..... .. +..|
T Consensus 54 ~~Y~-~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~-~~g~~~vlv~~p~y~~~~~---~~------~~~g 122 (364)
T PRK04781 54 RRYP-DPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC-VPGRDAVLVTPPVFGMYAV---CA------RLQN 122 (364)
T ss_pred ccCC-CCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc-CCCCCeEEEcCCChHHHHH---HH------HHcC
Confidence 3454 3447899999999998654 5788888999999998877 477 688888877643322 22 3458
Q ss_pred eeeeeeecCC---CCCCCHHHHHHHh-cccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 172 VLMRGVTNQK---DGTFDLDEMEAKF-STADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 172 ~~~~~~~~~~---~~~~d~~~l~~~i-~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
.+++.++..+ ...+|++++++.+ +. ++++|++++|+||| |.+++.+.++++++.|+ +++++|+||+|
T Consensus 123 ~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-------~~~lv~l~~p~NPT-G~~~~~~~~~~l~~~~~-~~~~iI~Deay 193 (364)
T PRK04781 123 APLVEVPLVDGADGFHADVPAIVAAALAS-------NAKLVFLCSPSNPA-GSAIALDQIERALQALQ-GKALVVVDEAY 193 (364)
T ss_pred CEEEEEecCCCccCCCcCHHHHHHHHhcc-------CCeEEEEcCCCCCC-CCCcCHHHHHHHHHhCC-CCcEEEEeCcc
Confidence 8888888632 2357888886654 34 78999999999999 99999999999998875 58999999998
Q ss_pred CChh------hhcccC-CeE-EEecccccC--cceeEEeecCccccc
Q psy5413 248 LPLA------EVCASV-DTV-MFCLSKGLG--APVGSILAGPEEFIQ 284 (285)
Q Consensus 248 ~~~~------~~~~~~-dv~-~~s~sK~l~--~p~gg~~~~~~~~i~ 284 (285)
..+. ...... .++ +.||||.++ |.+.|++++++++++
T Consensus 194 ~~f~~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l~~ 240 (364)
T PRK04781 194 GEFSDVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAELIA 240 (364)
T ss_pred hhhcCCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHHHH
Confidence 7221 122222 344 999999887 478889999888764
No 315
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=99.73 E-value=1.3e-16 Score=147.48 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=129.5
Q ss_pred eccCCcCCCcHHHHHHHHhccc-----C---CCCccCChhHHHHHH----HHHhHcCCCc-EEE----cCChHHHHHHHH
Q psy5413 71 IRSDTISKPTMEMKNYMFNCEV-----G---DDVYLEDPTCKELQE----KAAKLAGKEA-AIF----VPSGTMGNLIAI 133 (285)
Q Consensus 71 ~~~~~~~~~~~~v~~a~~~~~~-----~---~~~y~~~~~~~~l~~----~la~~~g~~~-~~~----~~~Gs~a~~~al 133 (285)
..++|+. ++.+++++..... + ...|+....+.++|+ +.+++++.+. .+. ..||+.||+.++
T Consensus 40 iasen~~--s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~ 117 (475)
T PLN03226 40 IASENFT--SRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVY 117 (475)
T ss_pred ecCCccC--CHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHH
Confidence 3566654 8889888876662 2 234444556777776 4455566554 332 489999999999
Q ss_pred HHccccCCCeEEecC------Ccceeeecccccccccccccccceeee--eeecC-CCCCCCHHHHHHHhcccccccCCc
Q psy5413 134 MTHCDRRDSEIIVGD------CSHIMLWEQGGASQTSVYSQIGRVLMR--GVTNQ-KDGTFDLDEMEAKFSTADNIHCAS 204 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~------~~h~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~ 204 (285)
.+++ ++||.|+..+ .+|.+......++ ..+..+. .++.+ +++.+|+++|++++.+. +
T Consensus 118 ~aL~-~pgD~Il~~d~~~gGhl~H~~~~~g~~~s-------~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~------~ 183 (475)
T PLN03226 118 TALL-QPHDRIMGLDLPHGGHLSHGYQTDGKKIS-------ATSIYFESMPYRLDESTGLIDYDKLEKKAMLF------R 183 (475)
T ss_pred HHhC-CCCCEEEECCCCcCcchhhhhhhcccccc-------cceEEEEeeeeeecCCCCCcCHHHHHHHHhhc------C
Confidence 9988 6999998744 3344332222222 1122211 22222 46779999999998752 5
Q ss_pred eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEee
Q psy5413 205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILA 277 (285)
Q Consensus 205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~ 277 (285)
+++|++. .++. +...| +++|+++|+++|+++++|++|+ ++. ....++|++++|+||||+||.||+++
T Consensus 184 pklIv~~-~S~~--s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~Gg~I~ 257 (475)
T PLN03226 184 PKLIIAG-ASAY--PRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRGGMIF 257 (475)
T ss_pred CeEEEEe-cCcC--CCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCceEEE
Confidence 6666652 2332 67788 8999999999999999999988 322 11247999999999999999999999
Q ss_pred cCcccc
Q psy5413 278 GPEEFI 283 (285)
Q Consensus 278 ~~~~~i 283 (285)
.+++++
T Consensus 258 ~~~~~~ 263 (475)
T PLN03226 258 FRKGPK 263 (475)
T ss_pred Echhhc
Confidence 877543
No 316
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.73 E-value=2.4e-17 Score=146.63 Aligned_cols=165 Identities=11% Similarity=0.082 Sum_probs=122.1
Q ss_pred CCccCChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccce
Q psy5413 95 DVYLEDPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 95 ~~y~~~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
..|. ++...+|++.+++++|.+. +++++|+++++..++.. + .+|+ +++.++++..... .. +..|.
T Consensus 35 ~~Yp-~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~-~-~~~~-vv~~~P~y~~y~~---~~------~~~G~ 101 (332)
T PRK06425 35 SIYP-EISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSY-I-NVGN-IIIVEPNFNEYKG---YA------FTHGI 101 (332)
T ss_pred ccCc-CcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHH-h-CCCc-EEEeCCChHHHHH---HH------HHcCC
Confidence 4554 5668999999999998754 57888889999888864 5 4665 5555666544433 22 34589
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA- 251 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~- 251 (285)
+++.+|.+. ...|.+.+++ . ++++|++++|+||| |.+++.+++++|+++|++||+++|+||+|..+.
T Consensus 102 ~v~~vp~~~-~~~~~~~l~~---~-------~~k~v~l~nP~NPT-G~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~ 169 (332)
T PRK06425 102 RISALPFNL-INNNPEILNN---Y-------NFDLIFIVSPDNPL-GNLISRDSLLTISEICRKKGALLFIDEAFIDFVP 169 (332)
T ss_pred eEEEEeCCc-ccCcHHHHhh---c-------CCCEEEEeCCCCCc-CCccCHHHHHHHHHHHHHcCCEEEEecchhcccc
Confidence 999998743 3345444431 2 67899999999999 899999999999999999999999999987221
Q ss_pred -------hhcccC-CeE-EEecccccCc--ceeEEeecCccccc
Q psy5413 252 -------EVCASV-DTV-MFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 252 -------~~~~~~-dv~-~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
...... .++ +.||||.++. .+.|++++++++++
T Consensus 170 ~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~li~ 213 (332)
T PRK06425 170 NRAEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYNMK 213 (332)
T ss_pred ccchhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHHHH
Confidence 111222 344 8999998874 67789998888764
No 317
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.73 E-value=2.9e-17 Score=145.95 Aligned_cols=186 Identities=16% Similarity=0.084 Sum_probs=129.5
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
+..++|..+.+..+.| ..+ ........|.... ..++++.+++++|.+ ..++++|+++++..+..+ + .+| .
T Consensus 17 ~~~~~~~~~~~~~~~~-~~~---~~~~~~~~y~~~~-~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l-~~g-~ 88 (330)
T TIGR01140 17 EDWLDFSTGINPLGPP-VPP---IPASAWARYPDPE-YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-L-APG-R 88 (330)
T ss_pred hheeEccccCCCCCCC-hhh---cchHHHhhCCCcc-HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-h-CCC-e
Confidence 4567777665555544 211 1111224455433 699999999999864 457777777777776554 4 467 5
Q ss_pred EEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC
Q psy5413 144 IIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP 223 (285)
Q Consensus 144 vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~ 223 (285)
|++.+++|..... .. ...|.+++.++ |++++++.+ + ++++|++++|+||+ |.+++
T Consensus 89 vl~~~p~y~~~~~---~~------~~~g~~~~~~~-------d~~~l~~~~-~-------~~~~v~i~~p~NPt-G~~~~ 143 (330)
T TIGR01140 89 VLVLAPTYSEYAR---AW------RAAGHEVVELP-------DLDRLPAAL-E-------ELDVLVLCNPNNPT-GRLIP 143 (330)
T ss_pred EEEeCCCcHHHHH---HH------HHcCCEEEEeC-------CHHHHHhhc-c-------cCCEEEEeCCCCCC-CCCCC
Confidence 7777766543322 22 34477777765 789999888 3 46789999999999 99999
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccCCh------hhhcc--cCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARLPL------AEVCA--SVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~~~------~~~~~--~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.+++++|+++|++||+++|+||+|..+ ..... ..++++.|+||+++. .+.|+++.++++++
T Consensus 144 ~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~~~ 214 (330)
T TIGR01140 144 PETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPALLA 214 (330)
T ss_pred HHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHHHH
Confidence 999999999999999999999998621 11111 223669999999885 45577888777654
No 318
>KOG0053|consensus
Probab=99.72 E-value=4.9e-17 Score=143.33 Aligned_cols=163 Identities=18% Similarity=0.106 Sum_probs=131.4
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.+|....+++.++++.|.+.++.++||..|+..++..++ +.|+++++.+..|.-+..... .+...+|.+...+.
T Consensus 75 ~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-~~g~~iV~~~~~Y~gT~~~l~-----~~~~~~gie~~~vd 148 (409)
T KOG0053|consen 75 GNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-PAGDHIVATGDVYGGTLRILR-----KFLPKFGGEGDFVD 148 (409)
T ss_pred CCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-CCCCcEEEeCCCcccHHHHHH-----HHHHHhCceeeeec
Confidence 478899999999999999999999999999999999987 689988876544433322110 11134566666665
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh---hhcc
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA---EVCA 255 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~---~~~~ 255 (285)
.+ +++++++++++ +|++|.+|.|+||. ..+.| |++|+++||++|+++++|+..+++. .+.-
T Consensus 149 ~~-----~~~~~~~~i~~-------~t~~V~~ESPsNPl-l~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~pL~l 212 (409)
T KOG0053|consen 149 VD-----DLKKILKAIKE-------NTKAVFLESPSNPL-LKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQDPLPL 212 (409)
T ss_pred hh-----hHHHHHHhhcc-------CceEEEEECCCCCc-ccccc---HHHHHHHHhhCCCEEEEeCCcCcccccChhhc
Confidence 43 78899999988 89999999999999 99999 9999999999999999999988542 3334
Q ss_pred cCCeEEEecccccCc---ceeEEeecC-cccc
Q psy5413 256 SVDTVMFCLSKGLGA---PVGSILAGP-EEFI 283 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~---p~gg~~~~~-~~~i 283 (285)
++|+++.|.+|+++| -+||.++.+ +++.
T Consensus 213 GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~ 244 (409)
T KOG0053|consen 213 GADIVVHSATKYIGGHSDVIGGSVVLNSEELA 244 (409)
T ss_pred CCCEEEEeeeeeecCCcceeeeEEecCcHHHH
Confidence 799999999999999 678888775 5543
No 319
>PRK08637 hypothetical protein; Provisional
Probab=99.72 E-value=1.4e-16 Score=144.67 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=129.9
Q ss_pred CcHHHHHHHHhccc-CCCCccCChhHHHHHHHHHhHcC-----C-----CcEEEcCChHHHHHHHHHHccccCCCeEEec
Q psy5413 79 PTMEMKNYMFNCEV-GDDVYLEDPTCKELQEKAAKLAG-----K-----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147 (285)
Q Consensus 79 ~~~~v~~a~~~~~~-~~~~y~~~~~~~~l~~~la~~~g-----~-----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~ 147 (285)
..+.+.+++.+... ....|+...+..+|++.+++++. . +.+++++|+++++..++.+++ .+||.|+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~-~~gd~Vlv~ 99 (388)
T PRK08637 21 YLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV-DQGDTVLLP 99 (388)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc-CCCCEEEEc
Confidence 45555565554222 23567766778889999987641 1 234788888999999999887 699999999
Q ss_pred CCcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
+++|....... . ...|.+++.++.. +++.+|++++++.++.. .....+++++++|+||| |.+++.++
T Consensus 100 ~P~y~~~~~~~--~------~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~---~~~~~~~~~~~~P~NPT-G~~~s~~~ 167 (388)
T PRK08637 100 DHNWGNYKLTF--N------TRRGAEIVTYPIFDEDGGFDTDALKEALQAA---YNKGKVIVILNFPNNPT-GYTPTEKE 167 (388)
T ss_pred CCCCccHHHHH--H------HhcCCEEEEecccCCCCcCCHHHHHHHHHhh---ccCCCEEEEEeCCCCCC-CCCCCHHH
Confidence 88765443211 1 1248888888863 44568999999988610 01145678888899999 99999999
Q ss_pred HHHHHHHHHH-----cCCeEEEeCccCCh-----------hhhcccC-CeE---EEecccccCc--ceeEEee
Q psy5413 227 LRELKARCQE-----HNIPVHMDGARLPL-----------AEVCASV-DTV---MFCLSKGLGA--PVGSILA 277 (285)
Q Consensus 227 l~~i~~la~~-----~gi~li~Dea~~~~-----------~~~~~~~-dv~---~~s~sK~l~~--p~gg~~~ 277 (285)
+++|+++|++ ||+++|+||+|..+ ..+.... .++ +.|+||.++. .+.|+++
T Consensus 168 ~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~ 240 (388)
T PRK08637 168 ATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFIT 240 (388)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEE
Confidence 9999999886 99999999997622 1111111 332 3499996554 6777776
No 320
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=99.72 E-value=2.4e-16 Score=143.92 Aligned_cols=193 Identities=21% Similarity=0.217 Sum_probs=134.7
Q ss_pred eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHc
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~ 136 (285)
...++|+. +|.+++++...+.+ ...|+......+++ ++..++||.+.+ +-..||+.||.+++.++
T Consensus 54 LiasEN~~--s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~al 131 (493)
T PRK13580 54 LIASENYS--SLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHSGADANLVAFWAI 131 (493)
T ss_pred EecccccC--CHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHH
Confidence 33556554 88998888755442 23444444455554 445666888876 88899999999999998
Q ss_pred cccC-------------------------------CCeEEec---CCcceeeecccccccccccccccceeeeeeecC-C
Q psy5413 137 CDRR-------------------------------DSEIIVG---DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-K 181 (285)
Q Consensus 137 ~~~~-------------------------------g~~vi~~---~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ 181 (285)
+. + ||.|+.. ...|........+. ....+.+..+.+ +
T Consensus 132 l~-~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-------~~~~~~~~y~vd~~ 203 (493)
T PRK13580 132 LA-HKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-------GKMFHQRSYGVDPD 203 (493)
T ss_pred hc-ccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-------hheeeeEecccCcc
Confidence 73 4 6777653 33343322111111 001222333333 4
Q ss_pred CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh---------
Q psy5413 182 DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA--------- 251 (285)
Q Consensus 182 ~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~--------- 251 (285)
++.+|++++++.+++ +++.|++.+.++.+ ...| +++|+++|+++|+++++|++|+ ++.
T Consensus 204 ~g~iD~d~l~~~~~~-------~~plvii~g~S~~~--~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~ 271 (493)
T PRK13580 204 TGLLDYDEIAALARE-------FKPLILVAGYSAYP--RRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDE 271 (493)
T ss_pred cCccCHHHHHHHHhh-------cCCEEEEeCccccC--CCcC---HHHHHHHHHHcCCEEEEECchhhceeccccchhhc
Confidence 577999999999988 67888888888773 4778 9999999999999999999988 221
Q ss_pred hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 252 EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 252 ~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
....++|++++|+||+|.||.||++++++++++
T Consensus 272 ~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~ 304 (493)
T PRK13580 272 DPVPHADIVTTTTHKTLRGPRGGLVLAKKEYAD 304 (493)
T ss_pred CCCCCCcEEEeCChhhccCCCeEEEEecHHHHH
Confidence 112478999999999998899999999887654
No 321
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.71 E-value=1.2e-16 Score=145.99 Aligned_cols=194 Identities=11% Similarity=0.081 Sum_probs=131.9
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhcccC-----CCCc-----cCChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEVG-----DDVY-----LEDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAI 133 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-----~~~y-----~~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al 133 (285)
..++.|.+...+..++.+.+++.+.... ...+ .......++++ + +++|.+ .++|++|+|+++..++
T Consensus 26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~ 103 (406)
T TIGR01814 26 NAVIYLDGNSLGLMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL 103 (406)
T ss_pred CCcEEecCCCcCcCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence 3457777665565666888887654321 1111 11122333434 4 778865 4689999999999998
Q ss_pred HHccccCC---CeEEecCCcceeeeccc-ccccccccccccceee----eeeecCCCCCCCHHHHHHHhcccccccCCce
Q psy5413 134 MTHCDRRD---SEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLM----RGVTNQKDGTFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 134 ~~~~~~~g---~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~----~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
..+. +++ +.|++.+..|.+..... ... +..|.++ +.++..+++.+|++++++.++. ..++|
T Consensus 104 ~~~~-~~~~~~~~i~~~~~~~~s~~~~~~~~~------~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~~t 172 (406)
T TIGR01814 104 ASFY-KPTPKRYKILLEAKAFPSDHYAIESQL------QLHGLTVEESMVQIEPREEETLRLEDILDTIEK----NGDDI 172 (406)
T ss_pred HHhc-CCcCCccEEEecCCCCChHHHHHHHHH------HhcCCCcccceEEeccCCCCccCHHHHHHHHHh----cCCCe
Confidence 8865 343 25777777776543211 011 2335555 4555545567899999998863 12389
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh---hcccCCeEEEecccccCcceeEEe
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE---VCASVDTVMFCLSKGLGAPVGSIL 276 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~---~~~~~dv~~~s~sK~l~~p~gg~~ 276 (285)
++|+++++++.+ |.+.| +++|+++|+++|+++++|++|+ +... ...++|++++|.||||++|.|+.+
T Consensus 173 ~lv~~~~v~~~t-G~~~~---~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG~~l 243 (406)
T TIGR01814 173 AVILLSGVQYYT-GQLFD---MAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPGAGA 243 (406)
T ss_pred EEEEEecccccc-ceecC---HHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCCeEE
Confidence 999999999999 99999 9999999999999999999998 3222 235899999999999976335543
No 322
>PLN02271 serine hydroxymethyltransferase
Probab=99.70 E-value=7.9e-16 Score=141.35 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=132.1
Q ss_pred ccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCc----E-EEcCChHHHHHHHHH
Q psy5413 72 RSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEA----A-IFVPSGTMGNLIAIM 134 (285)
Q Consensus 72 ~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~----~-~~~~~Gs~a~~~al~ 134 (285)
.++|+ .++.+++++...+.+ ...|+......++| ++..++|+.+. + +..-|||.|+.+++.
T Consensus 155 ASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~AN~aV~~ 232 (586)
T PLN02271 155 ASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTSANFAVYT 232 (586)
T ss_pred ccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHHHHHHHHH
Confidence 45555 488888887655542 23445555555555 44556678665 3 667799999999999
Q ss_pred HccccCCCeEEecCC---cceeeec---ccccccccccccccceeeeeee--cC-CCCCCCHHHHHHHhcccccccCCce
Q psy5413 135 THCDRRDSEIIVGDC---SHIMLWE---QGGASQTSVYSQIGRVLMRGVT--NQ-KDGTFDLDEMEAKFSTADNIHCAST 205 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~---~h~~~~~---~~~~~~~~~~~~~~g~~~~~~~--~~-~~~~~d~~~l~~~i~~~~~~~~~~~ 205 (285)
+++ ++||+|+..+. .|.+... .+... ...|..+..++ .+ +++.+|.+++++..... ++
T Consensus 233 ALl-~PGD~IL~ldl~~GGHlshg~~~~~g~~v------s~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~------rP 299 (586)
T PLN02271 233 GLL-LPGDRIMGLDSPSGGHMSHGYYTPGGKKV------SGASIFFESLPYKVNPQTGYIDYDKLEEKALDF------RP 299 (586)
T ss_pred Hhc-CCCCEEEEecCCCCCchhccccccccccc------ccccceEEEEEcccccccCccCHHHHHHHhhhc------CC
Confidence 987 79999888543 3332210 00111 12344444444 42 46789999999954332 89
Q ss_pred EEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhh------hcccCCeEEEecccccCcceeEEeec
Q psy5413 206 SLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAE------VCASVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 206 ~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~------~~~~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
++|++....++ ..+| +++++++|+++|+++++|.+|. ++.. ...++|++++|.||||.||+||+++.
T Consensus 300 KLII~g~Sayp---r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrGG~I~~ 373 (586)
T PLN02271 300 KILICGGSSYP---REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRGGIIFY 373 (586)
T ss_pred eEEEECchhcc---CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCceEEEe
Confidence 99999776665 6678 9999999999999999999998 3331 23579999999999999999999987
Q ss_pred Ccc
Q psy5413 279 PEE 281 (285)
Q Consensus 279 ~~~ 281 (285)
+++
T Consensus 374 r~~ 376 (586)
T PLN02271 374 RKG 376 (586)
T ss_pred ccc
Confidence 654
No 323
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.70 E-value=9.1e-16 Score=141.88 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=130.3
Q ss_pred ccCCcCCCcHHHHHHHHhcccCCC-------C-ccCChhHHH----HHHHHHhHcCCCcE--EEc---CChHHHHHHHHH
Q psy5413 72 RSDTISKPTMEMKNYMFNCEVGDD-------V-YLEDPTCKE----LQEKAAKLAGKEAA--IFV---PSGTMGNLIAIM 134 (285)
Q Consensus 72 ~~~~~~~~~~~v~~a~~~~~~~~~-------~-y~~~~~~~~----l~~~la~~~g~~~~--~~~---~~Gs~a~~~al~ 134 (285)
.++|+ .+|.+++++.....+.. . +.......+ .++.++++++.+.. .++ .||++|+..++.
T Consensus 41 ~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~ 118 (452)
T PTZ00094 41 ASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYT 118 (452)
T ss_pred ccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHH
Confidence 34544 48889999876554211 1 222222333 45688999997642 233 689999999999
Q ss_pred HccccCCCeEEecCCcceeeecccc-cccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecc
Q psy5413 135 THCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213 (285)
Q Consensus 135 ~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~ 213 (285)
+++ ++|++|++.+..|........ +.....-.......+..++.+.++.+|+++|++++++. ++++|++..
T Consensus 119 al~-~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~------~~~lvi~~~- 190 (452)
T PTZ00094 119 ALL-QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAF------RPKLIIAGA- 190 (452)
T ss_pred Hhc-CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHh------CCCEEEEeC-
Confidence 986 689999987766754432110 00000000011233344445556889999999999652 456666633
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCccc
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPEEF 282 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~ 282 (285)
+.+ |...| +++|.++|+++|+++++|++|+ +.. ....++|++++|+||||+||.||++..++++
T Consensus 191 -s~~-g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~Gg~l~~~~~~ 261 (452)
T PTZ00094 191 -SAY-PRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRSGLIFYRKKV 261 (452)
T ss_pred -CCC-CCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCceEEEEeccc
Confidence 234 89999 9999999999999999999998 322 1124789999999999999999998876654
No 324
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.70 E-value=3.2e-16 Score=138.72 Aligned_cols=188 Identities=20% Similarity=0.175 Sum_probs=142.9
Q ss_pred CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC--cE-EEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE--AA-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~--~~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~ 153 (285)
...+|+|++++.....+|..-.......++.+.+...++.+ .+ ++..+|+.|+++++..++ .+||+|++....- +
T Consensus 14 ~~v~~~V~~am~~~~~~h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl~-~pgdkVLv~~nG~-F 91 (383)
T COG0075 14 VPVPPRVLLAMARPMVGHRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASLV-EPGDKVLVVVNGK-F 91 (383)
T ss_pred CCCCHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhcc-CCCCeEEEEeCCh-H
Confidence 55789999999887766443333355778888889999876 33 788999999999999988 5999988754331 1
Q ss_pred eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
...+..++ +.+|.++..+...+....|+++++++++++ +++++|.+.+.-.+| |.+.| +++|+++
T Consensus 92 G~R~~~ia------~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~-----~~~~~V~~vH~ETST-Gvlnp---l~~I~~~ 156 (383)
T COG0075 92 GERFAEIA------ERYGAEVVVLEVEWGEAVDPEEVEEALDKD-----PDIKAVAVVHNETST-GVLNP---LKEIAKA 156 (383)
T ss_pred HHHHHHHH------HHhCCceEEEeCCCCCCCCHHHHHHHHhcC-----CCccEEEEEeccCcc-cccCc---HHHHHHH
Confidence 22233444 567888888888777789999999999862 256677777744444 89999 9999999
Q ss_pred HHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCccee-EEeecCcc
Q psy5413 234 CQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEE 281 (285)
Q Consensus 234 a~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~ 281 (285)
|++||.++|+|.+-+ .+..-.+++|+++.+..|+|++|-| +++.-+++
T Consensus 157 ~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~ 209 (383)
T COG0075 157 AKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSER 209 (383)
T ss_pred HHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHH
Confidence 999999999999966 3334457999999999999999444 55554443
No 325
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.69 E-value=2e-16 Score=146.29 Aligned_cols=163 Identities=19% Similarity=0.160 Sum_probs=123.9
Q ss_pred HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccc-cccccccccccceeeeeeec
Q psy5413 103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-ASQTSVYSQIGRVLMRGVTN 179 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 179 (285)
..++++.+++++|.+. +.++++|+++++.++.+....+|++|+++++.|.+...... .. ...|.+++.++.
T Consensus 114 ~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~------~~~G~~~~~v~~ 187 (447)
T PRK00451 114 IFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYL------KGQGIEVVEVPY 187 (447)
T ss_pred HHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHH------HhCCcEEEEecC
Confidence 4566677899998764 47889999988888877543578999999888865543221 11 235888899988
Q ss_pred CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE--eCccCChh--hhcc
Q psy5413 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM--DGARLPLA--EVCA 255 (285)
Q Consensus 180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~--Dea~~~~~--~~~~ 255 (285)
+++ .+|+++++++|++ ++++|++++| |++ |.+.| +++|+++|+++|+++++ |.+..+.. ....
T Consensus 188 ~~~-~~d~~~l~~~i~~-------~t~~v~l~~p-n~t-G~v~~---l~~I~~~a~~~~~~~iv~~d~~~~g~~~~~~~~ 254 (447)
T PRK00451 188 EDG-VTDLEALEAAVDD-------DTAAVVVQYP-NFF-GVIED---LEEIAEIAHAGGALFIVGVDPVSLGLLKPPGEY 254 (447)
T ss_pred CCC-CCCHHHHHHhcCC-------CeEEEEEECC-CCC-CeeCC---HHHHHHHHHHCCCEEEEEcChHHhccCCCcccC
Confidence 666 8999999999987 7999999998 677 89998 99999999999999998 65433221 1235
Q ss_pred cCCeEEEecccc-----cCcceeEEeecCccccc
Q psy5413 256 SVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 256 ~~dv~~~s~sK~-----l~~p~gg~~~~~~~~i~ 284 (285)
++|+++.+.+|+ ++||.+|+++.++++++
T Consensus 255 ~~D~~~~s~~k~~~~~~~~Gpg~G~l~~~~~~~~ 288 (447)
T PRK00451 255 GADIVVGEGQPLGIPLSFGGPYLGFFATRKKLVR 288 (447)
T ss_pred CCCEEEECCCcCCCCCCCCCCCchHHHhhHHHHh
Confidence 789998876675 67788888887777654
No 326
>KOG1360|consensus
Probab=99.69 E-value=6.6e-17 Score=139.95 Aligned_cols=192 Identities=21% Similarity=0.266 Sum_probs=144.2
Q ss_pred eccCCcCC-CcHHHHHHHHhcccC--------CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcccc-C
Q psy5413 71 IRSDTISK-PTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDR-R 140 (285)
Q Consensus 71 ~~~~~~~~-~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~-~ 140 (285)
.+|++... .||+|++|+.+.+.. .++-+.+....+||+.+|++.+++.+++++|.--||...+..+..+ +
T Consensus 177 CSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak~lp 256 (570)
T KOG1360|consen 177 CSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAKKLP 256 (570)
T ss_pred ecCccccccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHHHCC
Confidence 34444443 799999999877652 1244566778999999999999999998888888888888776532 4
Q ss_pred CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee
Q psy5413 141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220 (285)
Q Consensus 141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~ 220 (285)
|=+++.+...|.+... |.+-..++.--..+.|+++|+++++..+. ..+++|.+|.+++.+ |.
T Consensus 257 gcei~SD~gNHASMI~--------------GIrns~v~K~IFrHND~~hL~~lL~~~~~---svPKivAFEtVhSM~-Ga 318 (570)
T KOG1360|consen 257 GCEIFSDEGNHASMIQ--------------GIRNSRVPKHIFRHNDLDHLEQLLQSSPK---SVPKIVAFETVHSMD-GA 318 (570)
T ss_pred CcEEeccccchHHHHH--------------HhhhcCCcceeeccCCHHHHHHHHHhCCC---CCCceEEEeeeeccC-CC
Confidence 5566656666755422 22222232212234699999999976422 257999999999999 99
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch-----------hhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMDGARL-PL-----------AEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~Dea~~-~~-----------~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
++| |+||++++++||.+.++||+|+ ++ .+.....|++..++.|.||+ .||++++...++|
T Consensus 319 vcp---leelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGc-VGGYIAat~~LvD 390 (570)
T KOG1360|consen 319 VCP---LEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGC-VGGYIAATRKLVD 390 (570)
T ss_pred cCC---HHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccc-ccceehhhhhHHH
Confidence 999 9999999999999999999977 11 23446789999999999998 8999998887765
No 327
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.69 E-value=3.3e-16 Score=143.74 Aligned_cols=158 Identities=18% Similarity=0.171 Sum_probs=119.9
Q ss_pred ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHcc--------ccCCCeEEecCCcceeeecccccccccccccccc
Q psy5413 100 DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHC--------DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 100 ~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~--------~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
.+...++++.+++++|.+.+++++||++|+..++.+++ .++|++||++..+|..+.... ...|
T Consensus 62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v---------~~~G 132 (438)
T PRK15407 62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPI---------IQNG 132 (438)
T ss_pred ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHH---------HHcC
Confidence 46688999999999999999999999999999998762 257999999988886553311 1347
Q ss_pred eeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C
Q psy5413 172 VLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P 249 (285)
Q Consensus 172 ~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~ 249 (285)
.+++.++.+ .++.+|++++++++++ ++++|+++++. |...+ +++|.++|++||++||+|++|+ +
T Consensus 133 ~~pv~vdvd~~~~~id~~~le~~i~~-------~tkaVi~~~~~----G~p~d---l~~I~~la~~~gi~vIeDaa~a~G 198 (438)
T PRK15407 133 LVPVFVDVELPTYNIDASLLEAAVSP-------KTKAIMIAHTL----GNPFD---LAAVKAFCDKHNLWLIEDNCDALG 198 (438)
T ss_pred CEEEEEecCCCcCCcCHHHHHHHcCc-------CCeEEEEeCCC----CChhh---HHHHHHHHHHCCCEEEEECccchh
Confidence 777777764 4567899999999987 78999999875 66666 9999999999999999999988 2
Q ss_pred hh--h--hcccCCeEEEecc--cccCcceeEEeecCc
Q psy5413 250 LA--E--VCASVDTVMFCLS--KGLGAPVGSILAGPE 280 (285)
Q Consensus 250 ~~--~--~~~~~dv~~~s~s--K~l~~p~gg~~~~~~ 280 (285)
.. . .....|+.++||+ |.+...-||+++.+.
T Consensus 199 ~~~~g~~~G~~gd~~~fSf~~~k~~~~geGG~l~t~d 235 (438)
T PRK15407 199 STYDGRMTGTFGDIATLSFYPAHHITMGEGGAVFTND 235 (438)
T ss_pred hhcCCeeeeccCceEEEeCCCCCCccccCceEEEECC
Confidence 11 1 1123366666665 656543466666554
No 328
>KOG1359|consensus
Probab=99.69 E-value=5.3e-17 Score=135.50 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=151.7
Q ss_pred CeeeeeccCCcCC--CcHHHHHHHHhcccC------C--CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHH
Q psy5413 66 IRTVDIRSDTISK--PTMEMKNYMFNCEVG------D--DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 66 ~~~~~~~~~~~~~--~~~~v~~a~~~~~~~------~--~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~ 135 (285)
+++++|..+++-+ .||++.++-++++.. . ...++...+..||..|+.+.+.|.++++.++-.||..++.+
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~fea 146 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEA 146 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHH
Confidence 6888988777766 799999997766542 1 13456677999999999999999999999999999999988
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN 215 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n 215 (285)
.. .+.+.|+.+...|.+... |+++.. -..+.|+-+++..+.+.-+ .+.++|.+....+
T Consensus 147 il-~pedAvfSDeLNhASIId--------------GirLck----ry~h~dv~~l~~~l~~a~k---~r~klv~TDg~FS 204 (417)
T KOG1359|consen 147 IL-TPEDAVFSDELNHASIID--------------GIRLCK----RYRHVDVFDLEHCLISACK---MRLKLVVTDGVFS 204 (417)
T ss_pred hc-Chhhhhhccccccchhhh--------------hhHHHh----hhccchhHHHHHHHHHhhh---heEEEEEecceec
Confidence 76 477777777777765532 444433 3445688888877654211 2789999999999
Q ss_pred CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---------Chh---hhcccCCeEEEecccccCcceeEEeecCcccc
Q psy5413 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---------PLA---EVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283 (285)
Q Consensus 216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---------~~~---~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i 283 (285)
.. |.+.| |++|++++++||.++++||+|+ +.. .....+|++..+++|.+||-.||+.++++.++
T Consensus 205 MD-GdiaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li 280 (417)
T KOG1359|consen 205 MD-GDIAP---LEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLI 280 (417)
T ss_pred cC-CCccc---HHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHH
Confidence 99 99999 9999999999999999999988 222 22357889999999999998999999988765
No 329
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.69 E-value=4.3e-16 Score=141.87 Aligned_cols=166 Identities=19% Similarity=0.216 Sum_probs=120.1
Q ss_pred hhHHHHHHHHHhHcCCC---cEEEcCChH-HHHHHHHHHcccc--CCCeEEecCCcceeeecccccccccccccccceee
Q psy5413 101 PTCKELQEKAAKLAGKE---AAIFVPSGT-MGNLIAIMTHCDR--RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~---~~~~~~~Gs-~a~~~al~~~~~~--~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~ 174 (285)
....++++.+++++|.+ .++++++|| .++..++.++..+ +|++||++...|.++..+.... |.++
T Consensus 105 ~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~---------G~~p 175 (444)
T TIGR03531 105 KLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTA---------GFEP 175 (444)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHc---------CCeE
Confidence 34778889999999987 679999999 6888888776522 4788999888898887655454 7787
Q ss_pred eeeec---CCCCCCCHHHHHHHhcccccccCCceEEEEEecc-cCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh
Q psy5413 175 RGVTN---QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL 250 (285)
Q Consensus 175 ~~~~~---~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~ 250 (285)
+.++. ++++.+|+++|+++|++. ..+..++++..+ ++.. |.+.+ +++|+++|++||+|+|+|++|+..
T Consensus 176 v~Vd~~~d~~~~~iD~e~Le~aIt~~----~~kai~~Vv~Tp~t~~~-g~~dd---L~eIa~la~k~gI~lIvDaAyg~~ 247 (444)
T TIGR03531 176 RVIETVLDGDELTTDVEDIERAIEEI----GPDNILCVLSTTSCFAP-RSPDD---IEEIAKICANYDIPHIVNNAYGLQ 247 (444)
T ss_pred EEeeeeecCcCCCcCHHHHHHHHHhc----cCCCEEEEEEcCCcCCC-cchhC---HHHHHHHHHHcCCEEEEECcCcCc
Confidence 77773 356789999999999852 112334444333 3322 46666 999999999999999999999821
Q ss_pred h---------hhc-ccCCeEEEecccccCcce-eEEeec-Ccccc
Q psy5413 251 A---------EVC-ASVDTVMFCLSKGLGAPV-GSILAG-PEEFI 283 (285)
Q Consensus 251 ~---------~~~-~~~dv~~~s~sK~l~~p~-gg~~~~-~~~~i 283 (285)
. ... ..+|++++++||++..|. ||+++. +++++
T Consensus 248 ~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~ 292 (444)
T TIGR03531 248 SNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFI 292 (444)
T ss_pred ChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHH
Confidence 1 111 146999999999998854 555544 56554
No 330
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.69 E-value=2.9e-16 Score=140.06 Aligned_cols=181 Identities=10% Similarity=-0.008 Sum_probs=122.0
Q ss_pred eeeeecc-CCcCCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccCCC
Q psy5413 67 RTVDIRS-DTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRRDS 142 (285)
Q Consensus 67 ~~~~~~~-~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~g~ 142 (285)
.+++|++ .++.++++....+ ... ..|. ++. .+|++.+++++|.. .+++++|+++++..... ++ ++|+
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~~---~~Yp-~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~-~~g~ 95 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DAW---RRLP-EDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL-PRGR 95 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HHH---HhCC-Cch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc-CCCe
Confidence 4577774 5554444222111 111 2354 454 89999999999874 35777777777775544 45 4676
Q ss_pred eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC
Q psy5413 143 EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL 222 (285)
Q Consensus 143 ~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~ 222 (285)
+++..+++....... ...|.+++.++.++ +.+.+ .++++++++|+||| |.++
T Consensus 96 -v~v~~P~y~~y~~~~---------~~~g~~~~~v~~~~----------~~~~~-------~~~~v~l~nPnNPT-G~~~ 147 (339)
T PRK06959 96 -VGIAPLAYSEYAPAF---------ARHGHRVVPLDEAA----------DTLPA-------ALTHLIVVNPNNPT-AERL 147 (339)
T ss_pred -EEEcCCCcHHHHHHH---------HHCCCEEEeecccc----------hhccc-------cCCEEEEeCCCCCC-CCCC
Confidence 777777765443322 23488888776521 22323 45789999999999 9999
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCChh------hhcccCC-eEEEecccccCc--ceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLPLA------EVCASVD-TVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~~~------~~~~~~d-v~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
+.++++++++.|+++++++|+||+|..+. .+...-+ +++.||||.++. .+.|++++++++++
T Consensus 148 s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~li~ 218 (339)
T PRK06959 148 PAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPALLA 218 (339)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecChhhcCCcchheEEEecCHHHHH
Confidence 99999999999999999999999988321 1112223 448999998864 67789998888764
No 331
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=99.69 E-value=5.4e-16 Score=134.75 Aligned_cols=192 Identities=19% Similarity=0.182 Sum_probs=137.4
Q ss_pred eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCCcE-EEcCChHHHHHHHHHHc
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKEAA-IFVPSGTMGNLIAIMTH 136 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~~~-~~~~~Gs~a~~~al~~~ 136 (285)
..+|+|+. ++.|++|+-..+.+ .+.|+..+..+++| ++..++||.+.+ +...|||.||.+++.++
T Consensus 31 LIASEN~~--S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~anVQPhSGs~AN~av~~Al 108 (413)
T COG0112 31 LIASENFT--SPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLAL 108 (413)
T ss_pred eeeccccC--CHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHH
Confidence 34677765 88999997665542 34566555555555 444667899887 88999999999999998
Q ss_pred cccCCCeEEecCCc---ceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEec
Q psy5413 137 CDRRDSEIIVGDCS---HIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212 (285)
Q Consensus 137 ~~~~g~~vi~~~~~---h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~ 212 (285)
+ +|||.|+-.+.. |..... .+. ++... .+.+..+.+ +++.+|.|++++.+.++ ++++|+.-.
T Consensus 109 l-~pGDtimgm~l~~GGHltHg~--~v~----~sG~~-~~~v~Y~vd~et~~IDyD~~~k~a~e~------kPK~ii~G~ 174 (413)
T COG0112 109 L-QPGDTIMGLDLSHGGHLTHGS--PVN----FSGKL-FNVVSYGVDPETGLIDYDEVEKLAKEV------KPKLIIAGG 174 (413)
T ss_pred c-CCCCeEecccCCCCCcccCCC--CCC----cccee-EEeEecccccccCccCHHHHHHHHHHh------CCCEEEECc
Confidence 8 699998865433 322211 111 11111 344455554 45789999999999875 788888733
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecCc-ccc
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGPE-EFI 283 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~~-~~i 283 (285)
.-. -..+| +++++++|++-|.+|++|.+|. ++. .-..++|+++.|.||+|.||+||+++.++ ++.
T Consensus 175 SaY---~r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~eel~ 247 (413)
T COG0112 175 SAY---SRPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDEELA 247 (413)
T ss_pred ccc---ccccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccHHHH
Confidence 222 35666 9999999999999999999988 222 22357999999999999999999999885 554
No 332
>PLN02263 serine decarboxylase
Probab=99.68 E-value=6.5e-16 Score=140.70 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=120.9
Q ss_pred HHHHHHHH----HhHcCCCc----EEEcCChHHHHHHHHHHccccC-CCeEEecCCcceeeeccccccccccccccccee
Q psy5413 103 CKELQEKA----AKLAGKEA----AIFVPSGTMGNLIAIMTHCDRR-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL 173 (285)
Q Consensus 103 ~~~l~~~l----a~~~g~~~----~~~~~~Gs~a~~~al~~~~~~~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~ 173 (285)
..++|+.+ ++++|.+. ++++++||+||..++.+++... ...+++++.+|.+..++..+. |.+
T Consensus 131 s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~ll---------gi~ 201 (470)
T PLN02263 131 SRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMY---------RME 201 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhc---------CCc
Confidence 55666555 55556532 5899999999999999987532 235778999999988865555 888
Q ss_pred eeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC-----eEEEeCccC
Q psy5413 174 MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI-----PVHMDGARL 248 (285)
Q Consensus 174 ~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi-----~li~Dea~~ 248 (285)
++.+|.++++.+|+++|+++|.++ ..++.+|+.+-.+-++ |.+.| |++|.++|+++|+ |+|+|+|++
T Consensus 202 ~~~Vp~d~~g~mD~~aL~~aI~~d----~~~P~iVvataGTT~~-GAiDp---i~eIa~i~~~~g~~~~~iwlHVDAA~G 273 (470)
T PLN02263 202 CVKVDTLVSGEIDCADFKAKLLAN----KDKPAIINVNIGTTVK-GAVDD---LDLVIKTLEECGFSQDRFYIHCDGALF 273 (470)
T ss_pred ceEeccCCCCcCcHHHHHHHHHhC----CCCcEEEEEEecCCCC-cCCCC---HHHHHHHHHHcCCccCCeeEEEeccch
Confidence 999998888999999999999763 1245566666655566 99999 9999999999997 999999987
Q ss_pred Chh----------hhcccCCeEEEecccccCcce--eEEeecC
Q psy5413 249 PLA----------EVCASVDTVMFCLSKGLGAPV--GSILAGP 279 (285)
Q Consensus 249 ~~~----------~~~~~~dv~~~s~sK~l~~p~--gg~~~~~ 279 (285)
+.. .....+|.++.++|||++.|. |.+++.+
T Consensus 274 G~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~ 316 (470)
T PLN02263 274 GLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRM 316 (470)
T ss_pred hhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEeh
Confidence 321 111348999999999999854 4444443
No 333
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.67 E-value=1.9e-16 Score=142.14 Aligned_cols=169 Identities=23% Similarity=0.347 Sum_probs=123.2
Q ss_pred CCccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccccccccee
Q psy5413 95 DVYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL 173 (285)
Q Consensus 95 ~~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~ 173 (285)
+.+.+.....+.++.+|+.+|.++.+|..+| |.+|.+++.+++ ++||.|+++..+|.++..+..++ |..
T Consensus 60 ~L~~p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~-~~gd~VLv~RN~HkSv~~alil~---------ga~ 129 (417)
T PF01276_consen 60 DLHDPEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALC-RPGDKVLVDRNCHKSVYNALILS---------GAI 129 (417)
T ss_dssp BTTTTBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHT-TTTCEEEEETT--HHHHHHHHHH---------TEE
T ss_pred cccCCccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhc-CCCCEEEEcCCcHHHHHHHHHHc---------CCe
Confidence 3444556699999999999999998666555 677888888877 69999999999999887755455 777
Q ss_pred eeeeecCC--CC---CCCH-----HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 174 MRGVTNQK--DG---TFDL-----DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 174 ~~~~~~~~--~~---~~d~-----~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+.++... .+ .+++ +.++++|+++..+. .+++|++++|+.. |.+++ +++|+++|++++++|++
T Consensus 130 Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k--~~~~vvlt~PTY~--Gv~~d---i~~I~~~~h~~~~~llv 202 (417)
T PF01276_consen 130 PVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAK--APRLVVLTSPTYY--GVCYD---IKEIAEICHKHGIPLLV 202 (417)
T ss_dssp EEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCH--CESEEEEESS-TT--SEEE----HHHHHHHHCCTECEEEE
T ss_pred EEEecCCccccCCccCCChhhhhHHHHHHHHHhCcccc--CceEEEEeCCCCC--eEEEC---HHHHHHHhcccCCEEEE
Confidence 77665431 11 2455 99999998854332 1566999999988 99999 99999999999999999
Q ss_pred eCccCC---hh-----hhcccCC-------eEEEecccccCc-ceeEEeecCc
Q psy5413 244 DGARLP---LA-----EVCASVD-------TVMFCLSKGLGA-PVGSILAGPE 280 (285)
Q Consensus 244 Dea~~~---~~-----~~~~~~d-------v~~~s~sK~l~~-p~gg~~~~~~ 280 (285)
||||+. +. ....++| +++.|.||.+++ ..++++-.+.
T Consensus 203 DEAhGah~~F~~lp~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~ 255 (417)
T PF01276_consen 203 DEAHGAHFGFHPLPRSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKG 255 (417)
T ss_dssp E-TT-TTGGCSGGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEET
T ss_pred EccccccccCCCCccchhhccCccccccceeeeechhhcccccccceEEEecC
Confidence 999881 11 1225788 999999999998 5666665443
No 334
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.67 E-value=1.4e-15 Score=136.94 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=119.3
Q ss_pred CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccc-ccccccccccccceeeeee
Q psy5413 99 EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG-GASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 99 ~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~~~~~~~g~~~~~~ 177 (285)
.+|...+||+.++++.|.+.++.++||+.|+.+++.+++ ++||+|+++...|+.+.... ... ...|.+++.+
T Consensus 62 ~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all-~~GD~Vl~~~~~yg~t~~~~~~~~------~~~Gi~v~fv 134 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLI-KKGKRILSISDLYGQTFYFFNKVL------KTLGIHVDYI 134 (384)
T ss_pred CChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHh-CCCCEEEEecCccchHHHHHHHHH------HhcCcEEEEE
Confidence 678899999999999999999999999999999999876 68999998765444333211 111 3457787777
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh---hhhc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL---AEVC 254 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~---~~~~ 254 (285)
+.++.. .++ ++. .++++|+++.++|++ +.+.| +++|+++|++++ +++|.+++.. ..+.
T Consensus 135 d~~~~~-----~~~--l~~------~~tklv~~e~~snpt-~~v~D---i~~I~~la~~~~--lvVD~t~~s~~~~~pl~ 195 (384)
T PRK06434 135 DTDRLN-----SLD--FDP------SNYDLIYAESITNPT-LKVPD---IKNVSSFCHEND--VIVDATFASPYNQNPLD 195 (384)
T ss_pred CCCChh-----hee--ecC------CCeeEEEEEcCCCCC-ceeec---HHHHHHHHHHcC--eEEECCCCCcccCCchh
Confidence 763212 222 322 168999999999999 89999 999999999998 4679998722 2344
Q ss_pred ccCCeEEEecccccCc---ceeEEeec-Cccc
Q psy5413 255 ASVDTVMFCLSKGLGA---PVGSILAG-PEEF 282 (285)
Q Consensus 255 ~~~dv~~~s~sK~l~~---p~gg~~~~-~~~~ 282 (285)
.++|++++|.+|++++ -.||+++. ++++
T Consensus 196 ~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~ 227 (384)
T PRK06434 196 LGADVVIHSATKYISGHSDVVMGVAGTNNKSI 227 (384)
T ss_pred cCCCEEEeecccccCCCCCceEEEEecCcHHH
Confidence 6899999999999987 34777765 4443
No 335
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.67 E-value=1.6e-15 Score=147.53 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccc-------cCCCeEEecCCcceeeecccccccccccccccce
Q psy5413 101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD-------RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~-------~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
+...++++.+++++|.+.+ ++.++|+.|..+++.+... ...+.|+++...|++....... .|.
T Consensus 530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPasa~~---------~G~ 600 (939)
T TIGR00461 530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPASAAM---------AGM 600 (939)
T ss_pred HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHHHHH---------CCC
Confidence 4578999999999999876 7888888888776666542 1224588899999777554333 488
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Ch
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PL 250 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~ 250 (285)
+++.++.++++.+|+++|++++++ +++++++|++++|++. |.+ .+ +++|+++||++|.++++|.++. +.
T Consensus 601 ~Vv~V~~d~~G~iDle~L~~~i~~----~~~~taaV~iT~pst~--G~~e~~---I~eI~~iah~~G~~v~VDgAq~~al 671 (939)
T TIGR00461 601 QVVPVNCDQDGNIDLVDLKNKAEQ----HGDELAAVMVTYPSTH--GVFEPT---IQHACDIVHSFGGQVYLDGANMNAQ 671 (939)
T ss_pred EEEEeccCCCCCcCHHHHHHHHhh----cCCceEEEEEEeCCcC--ceeccc---HHHHHHHHHHcCCEEEEEecChhhC
Confidence 999999878899999999999986 3458999999999984 555 45 9999999999999999999986 12
Q ss_pred h---h-hcccCCeEEEecccccCc------ceeEEeecCcccc
Q psy5413 251 A---E-VCASVDTVMFCLSKGLGA------PVGSILAGPEEFI 283 (285)
Q Consensus 251 ~---~-~~~~~dv~~~s~sK~l~~------p~gg~~~~~~~~i 283 (285)
. . -..++|+++++.||+|++ |..|+++.++++.
T Consensus 672 ~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~ 714 (939)
T TIGR00461 672 VGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLI 714 (939)
T ss_pred CCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhch
Confidence 2 1 235899999999998884 5557777766543
No 336
>KOG0628|consensus
Probab=99.67 E-value=5.3e-16 Score=136.65 Aligned_cols=234 Identities=17% Similarity=0.192 Sum_probs=170.9
Q ss_pred cccchhhhhhcccCCCCCccccccc------ccccc----ccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCC
Q psy5413 10 DSHRQTKIAREVLTLPTPALVESTP------LSRSW----SDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKP 79 (285)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (285)
.-|+++...+.+.|...|+-+.... ....| .+......|++.+|.+|.++.+++. ...
T Consensus 18 adY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyfpa------------~~s 85 (511)
T KOG0628|consen 18 ADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYFPA------------GNS 85 (511)
T ss_pred HHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEccC------------ccc
Confidence 4577888888888777776654221 11222 3466678899999999998888877 445
Q ss_pred cHHHHHHHHhcccCCCCc--cCChhHHHHHHHHHhHcC----CC-----------cEEEcCChHHHHHHHHHHcccc---
Q psy5413 80 TMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAG----KE-----------AAIFVPSGTMGNLIAIMTHCDR--- 139 (285)
Q Consensus 80 ~~~v~~a~~~~~~~~~~y--~~~~~~~~l~~~la~~~g----~~-----------~~~~~~~Gs~a~~~al~~~~~~--- 139 (285)
.+.++..|.....+..+| ...|..+|||..+.+|++ .+ -+++..++|++++.++.++..+
T Consensus 86 ~~siladmLs~~i~~vGFtW~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~ 165 (511)
T KOG0628|consen 86 YPSILADMLSGGIGCVGFTWASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIE 165 (511)
T ss_pred hHHHHHHHHhcccccccceeecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHH
Confidence 678888888776665444 478999999988888763 11 2378888999999999887431
Q ss_pred ---CCC------------eEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCc
Q psy5413 140 ---RDS------------EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS 204 (285)
Q Consensus 140 ---~g~------------~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 204 (285)
.++ .+++++.+|.++.+++-++ +++++.++.+.++.++.+.|+++|+++...+ --
T Consensus 166 ~~k~~~p~~~e~~~~~~lV~Y~SDqahssveka~~i~---------~VklR~l~td~n~~mr~~~L~~AIe~D~arG-lI 235 (511)
T KOG0628|consen 166 EIKSRPPELHESSVLARLVAYCSDQAHSSVEKACLIA---------GVKLRALPTDENFGMRGDTLRKAIEEDIARG-LI 235 (511)
T ss_pred HhhcCCCcccchhhhhhheEEecCcccchHHHhHhhc---------ceeEEEeecccCcCCCHHHHHHHHHHHHhCC-Cc
Confidence 121 2567899999998877666 8899999987788899999999998854432 22
Q ss_pred eEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhh----------cccCCeEEEecccccCc
Q psy5413 205 TSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEV----------CASVDTVMFCLSKGLGA 270 (285)
Q Consensus 205 ~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~----------~~~~dv~~~s~sK~l~~ 270 (285)
+-+|+.+- ++ ..+..++|.+|..+|+++|+||++|++|++...+ .+++|.+.+..|||+..
T Consensus 236 Pf~v~at~GTT-----~~ca~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~v 307 (511)
T KOG0628|consen 236 PFFVCATLGTT-----SSCAFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLV 307 (511)
T ss_pred cEEEEEeecCc-----cccccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEE
Confidence 33333333 33 3334445999999999999999999999943332 25778999999999754
No 337
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.67 E-value=3.8e-15 Score=128.63 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=132.5
Q ss_pred cHHHHHHHHhccc------CCCCcc-CChhHHHHHHHHHhHcCCCcEE---EcCChHHHHHHHHHHccccCCCeEEec--
Q psy5413 80 TMEMKNYMFNCEV------GDDVYL-EDPTCKELQEKAAKLAGKEAAI---FVPSGTMGNLIAIMTHCDRRDSEIIVG-- 147 (285)
Q Consensus 80 ~~~v~~a~~~~~~------~~~~y~-~~~~~~~l~~~la~~~g~~~~~---~~~~Gs~a~~~al~~~~~~~g~~vi~~-- 147 (285)
...|++|+++.-. +...|+ .+...+.|++..|+.+|.|.++ ...|||.|+..++...+ +|||+++..
T Consensus 26 q~KVL~Af~~~~vs~~hf~~tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~L-rpGD~ll~~tG 104 (403)
T PF06838_consen 26 QLKVLKAFQENRVSDSHFAGTTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGVL-RPGDELLSITG 104 (403)
T ss_dssp HHHHHHHHHHTT--GGGCS---TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH---TT-EEEESSS
T ss_pred HHHHHHHHHHcCCChhhcCCCCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhcC-CCCCeEEEcCC
Confidence 4578888886544 234666 4567889999999999999985 45689999999999987 699997753
Q ss_pred CCcceeeecccccccc-cccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 148 DCSHIMLWEQGGASQT-SVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
.+| -...+.-++... ..--..+|+.+..++..+++.+|.+.+++++++ ++++|.+.-..+.+.-..++.++
T Consensus 105 ~PY-DTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~-------~tk~v~IQRSrGYs~R~sl~i~~ 176 (403)
T PF06838_consen 105 KPY-DTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKP-------NTKMVLIQRSRGYSWRPSLTIEE 176 (403)
T ss_dssp S---CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHT-------TEEEEEEE-S-TTSSS----HHH
T ss_pred Cch-hhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhcc-------CceEEEEecCCCCCCCCCCCHHH
Confidence 232 111111111110 000035799999999989999999999999997 89999999988877567788888
Q ss_pred HHHHHHHHHHc--CCeEEEeCccCChhh----hcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 227 LRELKARCQEH--NIPVHMDGARLPLAE----VCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~--gi~li~Dea~~~~~~----~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
|+++++++|+. ++++++|.+|+.+.+ ..-++|++..|+-|+.|| |.||++++++++++
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe 243 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVE 243 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCcCCEEechHHHHH
Confidence 99999988874 999999999994433 335899999999999988 99999999999986
No 338
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.66 E-value=1.8e-15 Score=138.74 Aligned_cols=185 Identities=22% Similarity=0.209 Sum_probs=132.8
Q ss_pred CCCcHHHHHHHHhcccC-CCCccCChhHHHHHHHHHhH----cCC-Cc--EEEcCChHHHHHHHHHHccccC----C---
Q psy5413 77 SKPTMEMKNYMFNCEVG-DDVYLEDPTCKELQEKAAKL----AGK-EA--AIFVPSGTMGNLIAIMTHCDRR----D--- 141 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~----~g~-~~--~~~~~~Gs~a~~~al~~~~~~~----g--- 141 (285)
+..++...+++...... -.-+...|...++++.+..+ ++. +. ..|+.+||+||+.++.++.... +
T Consensus 72 ~~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~ 151 (460)
T COG0076 72 TRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAES 151 (460)
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33566666665544432 22233345666677666554 555 32 4899999999999998875321 1
Q ss_pred ------CeEEecCCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHHHhcccccccCCceEE--EEEec
Q psy5413 142 ------SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEAKFSTADNIHCASTSL--VCVEN 212 (285)
Q Consensus 142 ------~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~i~~~~~~~~~~~~~--v~i~~ 212 (285)
.+||++..+|.+..++..+. |+.+..++..+ +..+|+++++++|++ .+.. |+..-
T Consensus 152 ~~~~~~P~ii~s~~aH~s~~Kaa~~l---------G~~~~~v~~~~~~~~id~~~l~~~i~~-------~t~~g~vV~~a 215 (460)
T COG0076 152 GKPGGKPNIVCSETAHFSFEKAARYL---------GLGLRRVPTVPTDYRIDVDALEEAIDE-------NTIGGVVVGTA 215 (460)
T ss_pred cccCCCCeEEecCcchhHHHHHHHHh---------CCCceeEEeccCccccCHHHHHHHHHh-------hccCceEEEEe
Confidence 15888999999988865554 77777777766 788999999999998 3332 55555
Q ss_pred ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh-----------hhhcccCCeEEEecccccCc--ceeEEeecC
Q psy5413 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL-----------AEVCASVDTVMFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 213 ~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~-----------~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~ 279 (285)
.+-++ |.+.| |++|+++|+++|+|+|+|+|++++ .+-.+++|.++.++||++.. +.|++++.+
T Consensus 216 GtT~~-G~iDd---i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd 291 (460)
T COG0076 216 GTTDT-GSIDD---IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRD 291 (460)
T ss_pred cCCCC-CccCC---HHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEEC
Confidence 55555 99999 999999999999999999998721 22346889999999999887 455666666
Q ss_pred cc
Q psy5413 280 EE 281 (285)
Q Consensus 280 ~~ 281 (285)
++
T Consensus 292 ~e 293 (460)
T COG0076 292 EE 293 (460)
T ss_pred HH
Confidence 63
No 339
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.65 E-value=2.6e-15 Score=124.24 Aligned_cols=190 Identities=15% Similarity=0.228 Sum_probs=152.8
Q ss_pred CcHHHHHHHHhcccCCC---Cc--c-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecC
Q psy5413 79 PTMEMKNYMFNCEVGDD---VY--L-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~---~y--~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~ 148 (285)
-+++.++|+.+...+.. .+ + .-|.+..+-+.+++++|.+.+-+++++.+|-++++.+++ ++||-|+++.
T Consensus 29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal~-~~gd~vV~D~ 107 (382)
T COG1103 29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHALC-KEGDWVVVDS 107 (382)
T ss_pred CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHhc-cCCCEEEEcC
Confidence 57788999888665522 11 1 335577788889999999999999999999999999988 7999999999
Q ss_pred CcceeeecccccccccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 149 CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 149 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
.+|+.++.+... .|.++..+|.+ +++.+++|...+.|++-.+..++.+++.+++++.+.- |.+.|
T Consensus 108 ~aHYttyvAAEr---------agl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~Y-GNl~D--- 174 (382)
T COG1103 108 LAHYTTYVAAER---------AGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEY-GNLAD--- 174 (382)
T ss_pred cchHHHHHHHHh---------cCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCc-CCchh---
Confidence 999888764434 48899999864 4567899999999887666666789999999988776 88888
Q ss_pred HHHHHHHHHHcCCeEEEeCccC-Ch---hhhcccCCeEEEecccccCc--ceeEEeecCcccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARL-PL---AEVCASVDTVMFCLSKGLGA--PVGSILAGPEEFI 283 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~-~~---~~~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i 283 (285)
-++++++|+++|+++++..+|+ +. ....-++|+++.|.||++++ |.| ++..++|+-
T Consensus 175 akkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiG-vl~~~eE~a 236 (382)
T COG1103 175 AKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIG-VLAMSEEWA 236 (382)
T ss_pred hHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCee-EEeehhHHH
Confidence 9999999999999999999998 33 33345899999999999877 755 666666553
No 340
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=99.63 E-value=5.7e-15 Score=132.10 Aligned_cols=190 Identities=17% Similarity=0.129 Sum_probs=114.2
Q ss_pred cCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHH----HHHHhHcCCC----cE-EEcCChHHHHHHHHHH
Q psy5413 73 SDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQ----EKAAKLAGKE----AA-IFVPSGTMGNLIAIMT 135 (285)
Q Consensus 73 ~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~----~~la~~~g~~----~~-~~~~~Gs~a~~~al~~ 135 (285)
++|+ .+|.+++++...+.+ ...|+......++| +++.++++++ .+ +-.-||+.|+.+++.+
T Consensus 28 SEN~--~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~a 105 (399)
T PF00464_consen 28 SENY--MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMA 105 (399)
T ss_dssp T-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHH
T ss_pred cccc--cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHH
Confidence 4444 488888888765542 12344445555544 5556778988 65 8888999999999999
Q ss_pred ccccCCCeEEecC---CcceeeecccccccccccccccceeeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEe
Q psy5413 136 HCDRRDSEIIVGD---CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVE 211 (285)
Q Consensus 136 ~~~~~g~~vi~~~---~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~ 211 (285)
++ ++||+|+..+ ..|.+........ ..-......+.+.++.+ +++.+|.+++++.+++. ++++|++-
T Consensus 106 Ll-~pGD~Im~l~l~~GGHlshg~~~~~~--~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~------kPklIi~G 176 (399)
T PF00464_consen 106 LL-KPGDTIMGLSLPHGGHLSHGSSVNFK--KISASGLYFESVPYPVDPDTGLIDYDELEKLAKEH------KPKLIICG 176 (399)
T ss_dssp HT--TT-EEEEEEGGGT--GGGT-TTSHS--BSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--------SEEEEE
T ss_pred HH-hhcCcEEecChhhccccccccccccc--ccccccceEEEEeeeeecCCCeECHHHHHHHHhhc------CCCEEEEC
Confidence 88 6999988743 3343221111110 00000012244555554 56789999999999875 88999997
Q ss_pred cccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch------hhhcccCCeEEEecccccCcceeEEeecC
Q psy5413 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL------AEVCASVDTVMFCLSKGLGAPVGSILAGP 279 (285)
Q Consensus 212 ~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~------~~~~~~~dv~~~s~sK~l~~p~gg~~~~~ 279 (285)
....+ ..+| +++++++|++.|.+|++|.+|. ++ ..-..++|++++|.||+|.||+||+++.+
T Consensus 177 ~S~y~---~~~d---~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggiI~~~ 245 (399)
T PF00464_consen 177 ASSYP---RPID---FKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGIILTN 245 (399)
T ss_dssp -SSTS---S------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EEEEES
T ss_pred chhcc---CccC---HHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCceEEEEc
Confidence 66553 5666 8999999999999999999988 22 12236799999999999999999999988
No 341
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.63 E-value=5.4e-15 Score=145.77 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHhHcCCCcEEE-cCChHHHHHHHHHHccc---cCCC----eEEecCCcceeeecccccccccccccccce
Q psy5413 101 PTCKELQEKAAKLAGKEAAIF-VPSGTMGNLIAIMTHCD---RRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~~~~-~~~Gs~a~~~al~~~~~---~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
....++++.+++++|.+.+.+ .++|++|+.+++.++.. ++|+ .|++++..|.+...... ..|.
T Consensus 542 ~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~---------~~G~ 612 (954)
T PRK05367 542 ELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAV---------MAGM 612 (954)
T ss_pred HHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHH---------HCCC
Confidence 347789999999999988744 45667777666644431 3444 48889999977655333 3488
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---- 248 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---- 248 (285)
+++.++.+.++.+|+++|++++++ +..++++|++++|+..+ +...| +++|+++||++|+++++|+++.
T Consensus 613 ~vv~v~~d~~G~iD~~~L~~~i~~----~~~~la~V~it~pst~G-~~e~~---I~eI~~i~h~~G~~v~VDgA~~~al~ 684 (954)
T PRK05367 613 KVVVVACDENGNIDLDDLRAKAEE----HADNLAAIMITYPSTHG-VFEET---IREICEIVHEHGGQVYLDGANMNAQV 684 (954)
T ss_pred EEEEECCCCCCCcCHHHHHHHHhc----cCCCeEEEEEEcCCCCe-eecCC---HHHHHHHHHHcCCEEEEECcChhhcc
Confidence 999999877889999999999976 23368899998888762 44478 9999999999999999999986
Q ss_pred Chhh-hcccCCeEEEecccccCccee------EEeecCccc
Q psy5413 249 PLAE-VCASVDTVMFCLSKGLGAPVG------SILAGPEEF 282 (285)
Q Consensus 249 ~~~~-~~~~~dv~~~s~sK~l~~p~g------g~~~~~~~~ 282 (285)
++.. ...++|++++++||||+.|.| |++..++++
T Consensus 685 ~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l 725 (954)
T PRK05367 685 GLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHL 725 (954)
T ss_pred CCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccc
Confidence 2222 235899999999999876553 455544443
No 342
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.62 E-value=7.3e-15 Score=142.22 Aligned_cols=154 Identities=21% Similarity=0.217 Sum_probs=119.9
Q ss_pred hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccc---c---C-CCeEEecCCcceeeecccccccccccccccce
Q psy5413 101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCD---R---R-DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~---~---~-g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
+...++++.+++++|.+.+ ++.++|+.|..+++.+... . + .++++++...|++.... + ...|.
T Consensus 543 q~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a------~~~Gi 613 (954)
T PRK12566 543 AMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---A------QMAGM 613 (954)
T ss_pred HHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---H------HHCCC
Confidence 4588999999999999987 5566888888777776432 1 2 24577888888665432 2 34499
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---- 248 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---- 248 (285)
+++.++.++++.+|+++|++++++ +.+++++|++++|++.+ +...+ +++|+++||++|+++++|.++.
T Consensus 614 eVv~Vp~D~~G~iDle~L~a~I~~----~~~~laaVmiT~Pnt~G-v~e~~---V~eI~~iah~~Galv~vDgA~~~a~~ 685 (954)
T PRK12566 614 RVVIVECDPDGNVDLDDLKAKAAA----AGDRLSCLMITYPSTHG-VYEEG---IREICEVVHQHGGQVYMDGANLNAQV 685 (954)
T ss_pred EEEEeccCCCCCcCHHHHHHHhhc----cCCCEEEEEEEecCcCc-eecch---HHHHHHHHHHcCCEEEEEeeChhhcc
Confidence 999999878899999999999985 23489999999988763 44444 9999999999999999999987
Q ss_pred Chh-hhcccCCeEEEecccccCcc
Q psy5413 249 PLA-EVCASVDTVMFCLSKGLGAP 271 (285)
Q Consensus 249 ~~~-~~~~~~dv~~~s~sK~l~~p 271 (285)
.+. ....++|++.+++||||++|
T Consensus 686 ~l~~Pg~~GADi~~~s~HKtf~~P 709 (954)
T PRK12566 686 GLARPADIGADVSHMNLHKTFCIP 709 (954)
T ss_pred CCCChhhcCCCEEEecCCcccCcC
Confidence 222 13468999999999999864
No 343
>KOG0256|consensus
Probab=99.62 E-value=1.9e-14 Score=125.33 Aligned_cols=174 Identities=18% Similarity=0.126 Sum_probs=133.4
Q ss_pred ccCChhHHHHHHHHHhHcC----------CCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccc
Q psy5413 97 YLEDPTCKELQEKAAKLAG----------KEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVY 166 (285)
Q Consensus 97 y~~~~~~~~l~~~la~~~g----------~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~ 166 (285)
|....+...+++.+|++++ .++.+++++++.|+++....++ .||+..+++.+|+.-.... +.
T Consensus 117 fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa-dpgdafLvPtPyY~gfdrd--l~----- 188 (471)
T KOG0256|consen 117 FQDYHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA-DPGDAFLVPTPYYPGFDRD--LR----- 188 (471)
T ss_pred cccccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc-CCCceeeecCCCCCccccc--ce-----
Confidence 4444557788999988863 2456899999999999999987 5999999998887544321 11
Q ss_pred ccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 167 SQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 167 ~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
-..|++++++... ..++++.++||+++++..+ .+.+++.|++.+|+||- |.+++++.|..+.+.|.+++|.||+|
T Consensus 189 -~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~-~~~kVkGvlitNPsNPL-G~~~~~e~L~~ll~Fa~~kniHvI~D 265 (471)
T KOG0256|consen 189 -WRTGVEIVPVHCSSSNGFQITVEALEAALNQARK-LGLKVKGVLITNPSNPL-GTTLSPEELISLLNFASRKNIHVISD 265 (471)
T ss_pred -eccCceEEEEEeecCCCccccHHHHHHHHHHHHH-hCCceeEEEEeCCCCCC-CCccCHHHHHHHHHHHhhcceEEEee
Confidence 2348898888764 3567999999999876433 45589999999999999 99999999999999999999999999
Q ss_pred CccC----------Chhhhcc----cCCeE--EEecccccCc--ceeEEeecCcc
Q psy5413 245 GARL----------PLAEVCA----SVDTV--MFCLSKGLGA--PVGSILAGPEE 281 (285)
Q Consensus 245 ea~~----------~~~~~~~----~~dv~--~~s~sK~l~~--p~gg~~~~~~~ 281 (285)
|+|+ ++..... ..|-+ +.++||-||. .+-|++-+..+
T Consensus 266 EIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne 320 (471)
T KOG0256|consen 266 EIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNE 320 (471)
T ss_pred hhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecCh
Confidence 9988 2222222 23433 8999998877 46677766543
No 344
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.61 E-value=1.4e-14 Score=136.35 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=132.0
Q ss_pred cHHHHHHHHhcccC--CCCccCChhHHHHHHHH----HhHcCCCc--EEEcCChHHHHHHHHHHccccC--------C--
Q psy5413 80 TMEMKNYMFNCEVG--DDVYLEDPTCKELQEKA----AKLAGKEA--AIFVPSGTMGNLIAIMTHCDRR--------D-- 141 (285)
Q Consensus 80 ~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~l----a~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~--------g-- 141 (285)
.|.++..+.....+ ...+..+|...++|+.+ ++++|.+. +.++++||+||..++.+++... .
T Consensus 96 ~paila~~~a~~~N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~ 175 (608)
T TIGR03811 96 MPAILAYNYAMLWNGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKP 175 (608)
T ss_pred HHHHHHHHHHHHhCCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccc
Confidence 45666665544443 34555677777777665 55567654 5899999999999998876321 0
Q ss_pred -----------------------------------------C------eEEecCCcceeeecccccccccccccccceee
Q psy5413 142 -----------------------------------------S------EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174 (285)
Q Consensus 142 -----------------------------------------~------~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~ 174 (285)
. .++++...|.+..++..+. ......+
T Consensus 176 ~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~il------GlG~~~v 249 (608)
T TIGR03811 176 ELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADII------GIGLDQV 249 (608)
T ss_pred cccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHHHc------CCCcccE
Confidence 0 3666777798888766555 2333368
Q ss_pred eeeecCCCCCCCHHHHHHHhcccccccCCceEE-EEEecccCCCCeeeCCHHHHHHHHHHH---HHcCC--eEEEeCccC
Q psy5413 175 RGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL-VCVENTHNYCGGTVLPMQWLRELKARC---QEHNI--PVHMDGARL 248 (285)
Q Consensus 175 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~-v~i~~~~n~~gG~~~~~~~l~~i~~la---~~~gi--~li~Dea~~ 248 (285)
+.+|.++++.+|+++|++.|++..+. +..+-+ |.+...++. |.+.| |++|+++| +++|+ |+|+|+|++
T Consensus 250 v~VpvD~~~rmd~~~L~~~I~~~~~~-g~p~~~VVataGTT~~--GaiDp---l~eI~~l~~~~~~~gl~~~lHVDAAyG 323 (608)
T TIGR03811 250 IPVPVDSNYRMDINELEKIIRKLAAE-KTPILGVVGVVGSTEE--GAVDG---IDKIVALRNKLMKEGIYFYLHVDAAYG 323 (608)
T ss_pred EEeecCCCCcCCHHHHHHHHHHHHhc-CCCeEEEEEEcCCcCC--cccCC---HHHHHHHHHHHHHcCCceeEeeecccc
Confidence 89998888999999999999764332 324444 444445554 99999 66666666 78998 699999988
Q ss_pred Chh---h---------------------------------------hcccCCeEEEecccccCc--ceeEEeecCccc
Q psy5413 249 PLA---E---------------------------------------VCASVDTVMFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 249 ~~~---~---------------------------------------~~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
+.. . ..+++|.++..+||++.. +.|++++.++++
T Consensus 324 G~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~ 401 (608)
T TIGR03811 324 GYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM 401 (608)
T ss_pred chhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH
Confidence 532 0 125789999999999888 456667776653
No 345
>KOG1403|consensus
Probab=99.59 E-value=2.1e-15 Score=126.38 Aligned_cols=231 Identities=13% Similarity=0.142 Sum_probs=147.2
Q ss_pred CCccccccccccccccCCCCCccceeeccCCccccccccCCeeeeeccCCcCCCcHHHHHHHHhcccC---CCCccCChh
Q psy5413 26 TPALVESTPLSRSWSDNGNLSIPAMYCWLLPVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVG---DDVYLEDPT 102 (285)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~---~~~y~~~~~ 102 (285)
.|..++++..-..++..+..+.+++..-.+- +++||+|.+|...++.. ..+|-.++.
T Consensus 29 DP~kivRaq~QYmfDE~g~~yLDCInNVaHv--------------------ghchp~VV~A~~kQmat~~tN~RFlhd~l 88 (452)
T KOG1403|consen 29 DPLKIVRAQGQYMFDEEGTRYLDCINNVAHV--------------------GHCHPEVVRAGAKQMATISTNNRFLHDEL 88 (452)
T ss_pred CchhhehhccceeeccCcccHHHHhhhhhhc--------------------ccCCHHHHHHHHHHHhHhcccchhhHHHH
Confidence 3555555555555555555555555444442 67999999998876652 446666665
Q ss_pred HHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeeccccccccccccccc---ceeeeee
Q psy5413 103 CKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIG---RVLMRGV 177 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~---g~~~~~~ 177 (285)
..-.++..+.+.+..-++|+||||+||..|++++.+.++ |.|.++..||+.......++.. .|.... ....+.+
T Consensus 89 v~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ftkhqDvItldHAYHGHl~s~mE~SPY-KF~~g~~v~kpd~VHV 167 (452)
T KOG1403|consen 89 VQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFTKHQDVITLDHAYHGHLQSVMEVSPY-KFNQGGGVAKPDYVHV 167 (452)
T ss_pred HHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhcccCceEEEechhccceeeeeeccce-eccCCCCcCCCceeEe
Confidence 555666666777778889999999999999999876544 4455677888766543333210 011111 1122222
Q ss_pred ---ecCCCC-------------CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-CHHHHHHHHHHHHHcCCe
Q psy5413 178 ---TNQKDG-------------TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-PMQWLRELKARCQEHNIP 240 (285)
Q Consensus 178 ---~~~~~~-------------~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-~~~~l~~i~~la~~~gi~ 240 (285)
|....+ ..-.+.+++.+++ -...+..+++.+.|..++-+ |.+. |.++++++++..+.+|.+
T Consensus 168 APcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d-~~~~g~gvAAfiAEslQSCG-GQiiPPagYFq~Va~~Vr~aGGv 245 (452)
T KOG1403|consen 168 APCPDVYRGKFRDKMYPDADMGALYADPVKEICQD-QLAKGQGVAAFIAESLQSCG-GQIIPPAGYFQAVADAVRSAGGV 245 (452)
T ss_pred cCCccccccccccccCCcccchhhhhhHHHHHHHH-HHhcCCcHHHHHHHHHHhcC-CcccCchhHHHHHHHHHhcCCCe
Confidence 211111 1112455555543 22234568899999988766 6655 468999999999999999
Q ss_pred EEEeCccCChhhhc------ccCCeE--EEecccccCc--ceeEEeecC
Q psy5413 241 VHMDGARLPLAEVC------ASVDTV--MFCLSKGLGA--PVGSILAGP 279 (285)
Q Consensus 241 li~Dea~~~~~~~~------~~~dv~--~~s~sK~l~~--p~gg~~~~~ 279 (285)
+|.||++.++.... +-+|++ +.++.|.+|. |.+++++++
T Consensus 246 ~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGhPVa~Vattk 294 (452)
T KOG1403|consen 246 CIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGHPVAAVATTK 294 (452)
T ss_pred EEeehhhhcccccchhhhhhhhhccccchheecccCCCCCeeeEEeccH
Confidence 99999988554332 234555 7778899988 988877654
No 346
>PRK15029 arginine decarboxylase; Provisional
Probab=99.58 E-value=2e-14 Score=137.88 Aligned_cols=168 Identities=14% Similarity=0.069 Sum_probs=126.6
Q ss_pred CCccCChhHHHHHHHHHhHcCCCcEE-EcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccccccccee
Q psy5413 95 DVYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVL 173 (285)
Q Consensus 95 ~~y~~~~~~~~l~~~la~~~g~~~~~-~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~ 173 (285)
+.+.+.-...+.++..|+.+|.++.+ ++||.|.+|.+++.+++ ++||.|+++..+|-+...+..++ |..
T Consensus 199 ~L~~p~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~-~~gd~Vlv~RN~HKSv~~al~L~---------ga~ 268 (755)
T PRK15029 199 SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACM-TDNDVVVVDRNCHKSIEQGLILT---------GAK 268 (755)
T ss_pred CCCCCCcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCe
Confidence 34445556999999999999999885 45555677888888877 69999999999999887755555 667
Q ss_pred eeeeecCC--C---CCCC-----HHHHHHHhcccccc---cCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe
Q psy5413 174 MRGVTNQK--D---GTFD-----LDEMEAKFSTADNI---HCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240 (285)
Q Consensus 174 ~~~~~~~~--~---~~~d-----~~~l~~~i~~~~~~---~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~ 240 (285)
.+.++... . +.++ ++.++++|++++.. .+.+++++++++|+.. |.+++ +++|+++|+++|++
T Consensus 269 Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~--Gv~~d---i~~I~~~~h~~~~~ 343 (755)
T PRK15029 269 PVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD--GVCYN---AKEAQDLLEKTSDR 343 (755)
T ss_pred EEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCc--ceeeC---HHHHHHHHHhcCCe
Confidence 66664321 1 1234 89999999775322 1235569999999988 99999 99999999999999
Q ss_pred EEEeCccCC-------h---hhh-----c-ccCC-eEEEecccccCc-ceeEEee
Q psy5413 241 VHMDGARLP-------L---AEV-----C-ASVD-TVMFCLSKGLGA-PVGSILA 277 (285)
Q Consensus 241 li~Dea~~~-------~---~~~-----~-~~~d-v~~~s~sK~l~~-p~gg~~~ 277 (285)
|++||||+. + ..+ . .++| +++-|.||.|++ ..++++-
T Consensus 344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LH 398 (755)
T PRK15029 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIH 398 (755)
T ss_pred EEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhhe
Confidence 999999871 1 111 1 4688 779999999998 5555553
No 347
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.54 E-value=6.7e-14 Score=122.88 Aligned_cols=153 Identities=24% Similarity=0.283 Sum_probs=123.0
Q ss_pred hhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHcc---ccCC----CeEEecCCcceeeecccccccccccccccce
Q psy5413 101 PTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHC---DRRD----SEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~---~~~g----~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
....+|++.|++..|.+.+ +..++|+++-.+.+.+.. ..+| +.+|+++..|+......+++ |.
T Consensus 109 ~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~---------G~ 179 (496)
T COG1003 109 ELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA---------GF 179 (496)
T ss_pred HHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc---------Cc
Confidence 4477899999999999987 778888888776665532 2234 35888999998877666666 99
Q ss_pred eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---- 248 (285)
Q Consensus 173 ~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---- 248 (285)
+++.++.++++.+|+++|++++.+ +++++++++|+-- |.. .+.+++|+++.|++|..|..|+|-.
T Consensus 180 ~VV~V~~~~~G~VDlddLk~k~~~-------~~AalMiTnPsT~--GvF--E~~I~ei~~ivH~~Gg~vY~DGANlNA~v 248 (496)
T COG1003 180 KVVVVKCDENGNVDLDDLRAKAED-------NLAALMITNPSTL--GVF--EEDIREICEIVHEAGGQVYYDGANLNAIV 248 (496)
T ss_pred eEEEEecCCCCCccHHHHHHHhcc-------ceeEEEeccCccc--ccc--hhhHHHHHHHHHHcCCEEEecCcchhhhh
Confidence 999999999999999999999987 8999999998843 443 4569999999999999999999955
Q ss_pred Chh-hhcccCCeEEEecccccCccee
Q psy5413 249 PLA-EVCASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 249 ~~~-~~~~~~dv~~~s~sK~l~~p~g 273 (285)
+.. .-..++|++-+.+||+|+.|.|
T Consensus 249 G~~rPGd~G~DV~HlNLHKTF~iPHG 274 (496)
T COG1003 249 GLARPGDMGFDVVHLNLHKTFCIPHG 274 (496)
T ss_pred ccccccccccceEEeecccccccCCC
Confidence 222 2235899999999999877544
No 348
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.53 E-value=9.9e-14 Score=136.37 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413 101 PTCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (285)
..+.+.|+.+++++|.+ . ++|+.|+|+|+..++..+..++|++|++....|.+......++ ...|.++..
T Consensus 78 ~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~~~gd~Iv~t~~eH~svl~~~~~a------~~~G~~v~~ 151 (805)
T PLN02724 78 DTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPWSSESHFCYTLENHNSVLGIREYA------LEKGAAAIA 151 (805)
T ss_pred HHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCCCCCCeEEEeeccccchHHHHHHH------HHcCCeEEe
Confidence 45889999999999963 2 4899999999999988864467899998777776543322222 344777777
Q ss_pred eecC--------CCCCCCH--HHHHHHhccc---ccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH---c---
Q psy5413 177 VTNQ--------KDGTFDL--DEMEAKFSTA---DNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE---H--- 237 (285)
Q Consensus 177 ~~~~--------~~~~~d~--~~l~~~i~~~---~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~---~--- 237 (285)
++.+ ..+.+++ ++|++.+++. .....+++++|.+.+.+|.+ |.+.| ++++.++++. +
T Consensus 152 v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~t-G~i~p---i~~i~~~~~~~~~~~~~ 227 (805)
T PLN02724 152 VDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFS-GAKFP---LDLVKLIKDNQHSNFSK 227 (805)
T ss_pred ccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCC-CCcCC---HHHHHHHHHhccccccc
Confidence 7653 2233333 5566654210 00112367899999999999 99999 5555443332 2
Q ss_pred --CCeEEEeCccC----ChhhhcccCCeEEEecccccCcce-eEEeecCcccc
Q psy5413 238 --NIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPV-GSILAGPEEFI 283 (285)
Q Consensus 238 --gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i 283 (285)
++++++|.+|+ .+..-..++|++++|+|||+|+|. .|++..+++++
T Consensus 228 ~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~ 280 (805)
T PLN02724 228 SGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIFGYPTGLGALLVRRDAA 280 (805)
T ss_pred CcceEEEeehhhhcCCCCCChhhcCCCEEEEecceeccCCCCceEEEEehhhh
Confidence 35799999988 222223589999999999999875 35665555543
No 349
>KOG1357|consensus
Probab=99.52 E-value=4.6e-14 Score=124.22 Aligned_cols=198 Identities=25% Similarity=0.267 Sum_probs=148.3
Q ss_pred eeeeeccCCcCC-------CcHHHHHHHHhcccC----CCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHH
Q psy5413 67 RTVDIRSDTISK-------PTMEMKNYMFNCEVG----DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMT 135 (285)
Q Consensus 67 ~~~~~~~~~~~~-------~~~~v~~a~~~~~~~----~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~ 135 (285)
+.+++.+-|+-+ +.+.+.+++...... ....+....+.++++.+|++.|+++++.+.-|-..|...+-.
T Consensus 137 ~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~ 216 (519)
T KOG1357|consen 137 RCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPS 216 (519)
T ss_pred eeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCcce
Confidence 455565555544 788999998876542 223345667999999999999999998888888888888877
Q ss_pred ccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCce------EEEE
Q psy5413 136 HCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAST------SLVC 209 (285)
Q Consensus 136 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~------~~v~ 209 (285)
++ .+|.-|+.+...|.+......++ |..++.+..+ |+++||+.+++....+.++| -+|+
T Consensus 217 l~-~~gsLIiSDelNHaSi~~GaRLS---------gAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~ii 281 (519)
T KOG1357|consen 217 LL-GKGSLIISDELNHASLITGARLS---------GATTRVFRHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILIC 281 (519)
T ss_pred ee-cCCcceeeccccchheecccccc---------CceEEEEecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeee
Confidence 77 47776777778898876655565 7787777764 77888877765422222222 3677
Q ss_pred EecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh-----hhc-------ccCCeEEEecccccCcceeEEe
Q psy5413 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA-----EVC-------ASVDTVMFCLSKGLGAPVGSIL 276 (285)
Q Consensus 210 i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~-----~~~-------~~~dv~~~s~sK~l~~p~gg~~ 276 (285)
++...+.- |.++. |+++.+++|+|...|+.||+|+ +.. ..+ ..+|+...++.|.+++ .||++
T Consensus 282 vegiysmE-g~iv~---Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga-~GGyi 356 (519)
T KOG1357|consen 282 VEGIYSME-GTIVD---LPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGA-AGGYI 356 (519)
T ss_pred eccceecc-Ceecc---cHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhccc-cccee
Confidence 77777776 89999 9999999999999999999988 111 111 4567889999999987 79999
Q ss_pred ecCccccc
Q psy5413 277 AGPEEFIQ 284 (285)
Q Consensus 277 ~~~~~~i~ 284 (285)
++++++++
T Consensus 357 agsk~lid 364 (519)
T KOG1357|consen 357 AGSKELID 364 (519)
T ss_pred cCcHHHHh
Confidence 99998876
No 350
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=99.50 E-value=7.9e-15 Score=127.95 Aligned_cols=181 Identities=23% Similarity=0.290 Sum_probs=42.1
Q ss_pred cHHHHHHHHhcccCCC--Ccc-----CChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEecCCcce
Q psy5413 80 TMEMKNYMFNCEVGDD--VYL-----EDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152 (285)
Q Consensus 80 ~~~v~~a~~~~~~~~~--~y~-----~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~ 152 (285)
++++.+++.+...+.. -|. -...+..+++.++.++|++.++++|+...|++.++..+. +|++||++..--.
T Consensus 19 ~~~a~~a~~~~a~~Y~nLE~dl~~G~Rg~R~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la--~~~EvIvsRGelV 96 (367)
T PF03841_consen 19 SEEAIEAVAEVASGYSNLEYDLETGKRGSRYAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA--KGKEVIVSRGELV 96 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 5666777666554311 111 111256788999999999999999999999999998875 5777887532111
Q ss_pred ----e--eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCee----eC
Q psy5413 153 ----M--LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT----VL 222 (285)
Q Consensus 153 ----~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~----~~ 222 (285)
+ ..... ...|.+++.+-.+. ...+++++++|++ +|++++--+++|.. .. ..
T Consensus 97 eiGgsFRip~vm---------~~sGa~lvEVGttN--~t~~~Dye~AI~e-------~Ta~ll~Vh~Sn~~-i~GFt~~~ 157 (367)
T PF03841_consen 97 EIGGSFRIPDVM---------RQSGARLVEVGTTN--RTHLSDYEKAITE-------NTAALLKVHTSNFR-IQGFTGEV 157 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccc---------cccccccccccccc--ccccccccccccc-------cccccccccccccc-cccccccc
Confidence 1 11111 24588888887643 3468899999998 89999888877763 11 34
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccCC--------------hh-hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARLP--------------LA-EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~~--------------~~-~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+ ++++++++++|++++|+|..-+. +. .+..++|++++|..|.||||.+|+++|++++|+
T Consensus 158 ~---~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~ 231 (367)
T PF03841_consen 158 S---LEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIE 231 (367)
T ss_dssp ------HHHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHH
T ss_pred c---HHHHHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHH
Confidence 4 99999999999999999987531 11 123689999999999999999999999999986
No 351
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.49 E-value=1.7e-13 Score=124.02 Aligned_cols=182 Identities=13% Similarity=0.046 Sum_probs=124.8
Q ss_pred CCCcHH-HHHHHHhcccC--CCCccCChhHHHHHHHHHhHcCCC---cEEEc-CChHHHHHHHHHHccccCCCeEEecCC
Q psy5413 77 SKPTME-MKNYMFNCEVG--DDVYLEDPTCKELQEKAAKLAGKE---AAIFV-PSGTMGNLIAIMTHCDRRDSEIIVGDC 149 (285)
Q Consensus 77 ~~~~~~-v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~g~~---~~~~~-~~Gs~a~~~al~~~~~~~g~~vi~~~~ 149 (285)
...+|. |++++.+...+ +........+.+.++.++++++.+ .++|+ .|||.+++.++..+....+..++. ..
T Consensus 21 ~~~~~~~v~~a~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l~~~~~~~vi~-~g 99 (378)
T PRK03080 21 CKKRPGWQLEALADALLGRSHRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSLLGARRVDHLA-WE 99 (378)
T ss_pred cCCChHHHHHHHHhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhcCCCCcceEEE-eC
Confidence 445666 99999876654 333223456889999999999963 35666 499999999999886312344444 44
Q ss_pred cceeeecccccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHH
Q psy5413 150 SHIMLWEQGGASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLR 228 (285)
Q Consensus 150 ~h~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~ 228 (285)
.|..-+.. ... +..|. ++..++.+++...|+++++ . ++.|.+++..+.+ |.+.| ++
T Consensus 100 ~f~~~~~~-~~~------~~~g~~~v~~~~~~~g~~~d~~~i~----~--------~~~V~~~h~~t~t-G~~~p---i~ 156 (378)
T PRK03080 100 SFGSKWAT-DVV------KQLKLEDPRVLEADYGSLPDLSAVD----F--------DRDVVFTWNGTTT-GVRVP---VA 156 (378)
T ss_pred HHHHHHHH-HHH------hhcCCCCceEeccCCCCCCCHhhcC----C--------CCCEEEEecCCcc-ceecc---ch
Confidence 44432110 011 23466 7777776566667776622 2 3468888888888 99999 99
Q ss_pred HHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcce-eEEeecCccccc
Q psy5413 229 ELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPV-GSILAGPEEFIQ 284 (285)
Q Consensus 229 ~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~-gg~~~~~~~~i~ 284 (285)
+|++ ++||+++++|.+++ +...+ ...+|+++++.+|||++|. .|++..+++.++
T Consensus 157 ~I~~--~~~g~~~vVDa~qs~G~~pidv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~ 213 (378)
T PRK03080 157 RWIG--ADREGLTICDATSAAFALPLDWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVE 213 (378)
T ss_pred hhcc--ccCCCeEEEecccccccCCCCHHHCcEEEEehhhhCCCCCceEEEEECHHHHH
Confidence 9988 88999999999988 22221 2347999999999999954 577777776654
No 352
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.46 E-value=6.7e-13 Score=126.35 Aligned_cols=167 Identities=11% Similarity=0.095 Sum_probs=121.8
Q ss_pred CccCChhHHHHHHHHHhHcCCCcEE-EcCChHHHHHHHHHHccccCCCeEEecCCcceeeecc-ccccccccccccccee
Q psy5413 96 VYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ-GGASQTSVYSQIGRVL 173 (285)
Q Consensus 96 ~y~~~~~~~~l~~~la~~~g~~~~~-~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~~~~~~~g~~ 173 (285)
.....-...+.++..|+.+|.++.+ ++||.|.+|.+++.+++ .+||.|+++..+|-+.... ..++ |..
T Consensus 169 L~~~eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~-~~Gd~VLvdRN~HKSv~hgaLiLs---------Ga~ 238 (720)
T PRK13578 169 LLIHEGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALL-TPGDLVLFDRNNHKSNHHGALIQA---------GAT 238 (720)
T ss_pred CCCCChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHHc---------CCe
Confidence 3334455899999999999999885 55555778888888877 6999999999999887653 3344 667
Q ss_pred eeeeecCC--C---CCCC-----HHHHHHHhcccc-c--ccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH-HHHcCC
Q psy5413 174 MRGVTNQK--D---GTFD-----LDEMEAKFSTAD-N--IHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR-CQEHNI 239 (285)
Q Consensus 174 ~~~~~~~~--~---~~~d-----~~~l~~~i~~~~-~--~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l-a~~~gi 239 (285)
.+.++... . +.++ .+.|+++|+++. + ......+++++++|+.. |.+++ +++|+++ |+.++
T Consensus 239 PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYd--G~~yd---i~~I~~~~~h~~~- 312 (720)
T PRK13578 239 PVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYD--GTIYN---ARQVVDKIGHLCD- 312 (720)
T ss_pred EEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCc--ceeec---HHHHHHHhhccCC-
Confidence 66665322 1 1244 455999987741 1 01112689999999988 99999 9999998 68888
Q ss_pred eEEEeCccC------Ch------hhhcccCC----eEEEecccccCc-ceeEEeec
Q psy5413 240 PVHMDGARL------PL------AEVCASVD----TVMFCLSKGLGA-PVGSILAG 278 (285)
Q Consensus 240 ~li~Dea~~------~~------~~~~~~~d----v~~~s~sK~l~~-p~gg~~~~ 278 (285)
+|++||||+ +. ..+..++| +++-|.||.|++ ..++++-.
T Consensus 313 ~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHv 368 (720)
T PRK13578 313 YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHK 368 (720)
T ss_pred cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhc
Confidence 999999977 11 11335778 889999999998 55555533
No 353
>KOG2862|consensus
Probab=99.44 E-value=6.7e-13 Score=111.97 Aligned_cols=186 Identities=17% Similarity=0.127 Sum_probs=139.6
Q ss_pred CCCcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcE---EEcCChHHHHHHHHHHccccCCCeEEecCCccee
Q psy5413 77 SKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAA---IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~---~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~ 153 (285)
...+++|++|+.....++..-..-....++.+-+...|..... ++..+|..+.++|+..++ .+||++++....- .
T Consensus 26 snl~~~V~~A~~~~~lgh~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~l-ePgd~vLv~~~G~-w 103 (385)
T KOG2862|consen 26 SNLSGRVQEAMSRPSLGHMSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNLL-EPGDNVLVVSTGT-W 103 (385)
T ss_pred cCCCHHHHHhhcCCccccCCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhhc-CCCCeEEEEEech-H
Confidence 3457889999888777665443345577788888888765543 788899999999999988 4999877643221 1
Q ss_pred eecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHH
Q psy5413 154 LWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233 (285)
Q Consensus 154 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~l 233 (285)
...+.-+. +.+|.++..++.+......+|.+++++.++ ++++|.+++.-..| |.+.|. ++.+-++
T Consensus 104 g~ra~D~~------~r~ga~V~~v~~~~G~~~~le~i~~~lsqh------~p~~vfv~hgdsST-gV~q~~--~~~~g~l 168 (385)
T KOG2862|consen 104 GQRAADCA------RRYGAEVDVVEADIGQAVPLEEITEKLSQH------KPKAVFVTHGDSST-GVLQDL--LAISGEL 168 (385)
T ss_pred HHHHHHHH------HhhCceeeEEecCcccCccHHHHHHHHHhc------CCceEEEEecCccc-cccchH--HHHHHHH
Confidence 11222233 567888888888777789999999999985 78999999977777 888883 5667789
Q ss_pred HHHcCCeEEEeCccC----ChhhhcccCCeEEEecccccCcceeE-EeecC
Q psy5413 234 CQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKGLGAPVGS-ILAGP 279 (285)
Q Consensus 234 a~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~l~~p~gg-~~~~~ 279 (285)
|++|+.++++|.+-+ .+..-.+++|+......|.|++|.|- .++.+
T Consensus 169 c~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS 219 (385)
T KOG2862|consen 169 CHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFS 219 (385)
T ss_pred hhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecC
Confidence 999999999999965 33334579999999999999997663 44443
No 354
>KOG0634|consensus
Probab=99.43 E-value=2.4e-12 Score=113.15 Aligned_cols=177 Identities=12% Similarity=0.098 Sum_probs=131.3
Q ss_pred CccCChhHHHHHHHHHhHcCC--------C-cEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeeccccccccccc
Q psy5413 96 VYLEDPTCKELQEKAAKLAGK--------E-AAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVY 166 (285)
Q Consensus 96 ~y~~~~~~~~l~~~la~~~g~--------~-~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~ 166 (285)
.|+...+..+|...+.+..+. + ..+++++.+.+++.+++.++ .+|+.|++...++..... .+
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~-N~gd~vlie~~ty~~AL~--s~------ 165 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI-NRGDHVLIEEYTYPSALQ--SM------ 165 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh-cCCCceEEecccchHHHH--hc------
Confidence 566666777888888776551 1 24788888999999999999 599999998776643322 11
Q ss_pred ccccceeeeeeecCCCCCCCHHHHHHHhccccc--ccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 167 SQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADN--IHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 167 ~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~--~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
+..|+.+++++.+.+ .+++|.|++.+..-+. .+..+.+++++-+ -+||| |..++.+.-++|.++|++||+++|.
T Consensus 166 -~a~gv~~ipv~md~~-Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPT-G~tls~errk~iy~LArKyDfLIVe 242 (472)
T KOG0634|consen 166 -EALGVKIIPVKMDQD-GIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPT-GNTLSLERRKKIYQLARKYDFLIVE 242 (472)
T ss_pred -cccCceEEeccccCC-CCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCC-CCccCHHHHHHHHHHHHHcCEEEEe
Confidence 245899999998444 4899999999865321 1234577887777 89999 9999999999999999999999999
Q ss_pred eCccC----C------------h---hhh--------cccC--CeE-EEecccccCc-ceeEEeecCccccc
Q psy5413 244 DGARL----P------------L---AEV--------CASV--DTV-MFCLSKGLGA-PVGSILAGPEEFIQ 284 (285)
Q Consensus 244 Dea~~----~------------~---~~~--------~~~~--dv~-~~s~sK~l~~-p~gg~~~~~~~~i~ 284 (285)
||.|. . . ... ..+. .|+ .-||||.++. .+-|++.+++-+++
T Consensus 243 DdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ 314 (472)
T KOG0634|consen 243 DDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLK 314 (472)
T ss_pred cCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHH
Confidence 99966 1 0 001 1122 245 8999999887 78889999887665
No 355
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.43 E-value=4.6e-12 Score=106.54 Aligned_cols=203 Identities=20% Similarity=0.199 Sum_probs=121.4
Q ss_pred eeeeccCCcCCCcHHHHHHHHhccc----C------CCCccCChhHHHHHHHHHhHc----CC----CcEEEcCChHHHH
Q psy5413 68 TVDIRSDTISKPTMEMKNYMFNCEV----G------DDVYLEDPTCKELQEKAAKLA----GK----EAAIFVPSGTMGN 129 (285)
Q Consensus 68 ~~~~~~~~~~~~~~~v~~a~~~~~~----~------~~~y~~~~~~~~l~~~la~~~----g~----~~~~~~~~Gs~a~ 129 (285)
.+.+..+|+. .-|+|.+.+++... . -..|...+....|-+.+++.+ |. +...++++...+.
T Consensus 32 ~imLggGNPa-~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~f 110 (417)
T COG3977 32 AIMLGGGNPA-RIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAF 110 (417)
T ss_pred ceeeCCCCcc-cChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchH
Confidence 4666666654 35666666554321 1 135665555555555555554 43 2235555444555
Q ss_pred HHHHHHccccC--CC--eEEec--CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCC
Q psy5413 130 LIAIMTHCDRR--DS--EIIVG--DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCA 203 (285)
Q Consensus 130 ~~al~~~~~~~--g~--~vi~~--~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~ 203 (285)
.-++..+..+. |+ .|+.+ +.|-++.. ..+..+.+.+.....++..- ....++.|+++|+ +.+
T Consensus 111 FYlfNlF~G~~sdG~~k~illPLaPeYiGY~d--~~l~~d~fVs~kP~iel~~~-g~FKY~vDF~~l~--i~e------- 178 (417)
T COG3977 111 FYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD--AGLEEDLFVSAKPNIELLPA-GQFKYHVDFEHLH--IGE------- 178 (417)
T ss_pred HHHHHHhcCccCCCcceeEeeccChhhccccc--cccCccceeeccCCcccccc-cceeeccCHHHcc--ccc-------
Confidence 55555543222 32 35553 22222211 11110111121122222221 1134578888876 444
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-hh-------hhcccCCeE-EEeccc-ccCccee
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-LA-------EVCASVDTV-MFCLSK-GLGAPVG 273 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-~~-------~~~~~~dv~-~~s~sK-~l~~p~g 273 (285)
.+.+|+++-|+||| |.+...+++.+|.++|++||+++++|.+|+. +. ...++-+++ |+|+|| +|-|-+.
T Consensus 179 ~~g~ic~SRPtNPT-GNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~ 257 (417)
T COG3977 179 STGAICVSRPTNPT-GNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRC 257 (417)
T ss_pred ccceEEecCCCCCC-CCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcce
Confidence 78999999999999 8999999999999999999999999999992 21 123556666 999999 4555688
Q ss_pred EEeecCccccc
Q psy5413 274 SILAGPEEFIQ 284 (285)
Q Consensus 274 g~~~~~~~~i~ 284 (285)
|+++++++++.
T Consensus 258 GIiIane~viq 268 (417)
T COG3977 258 GIIIANEKVIQ 268 (417)
T ss_pred eEEEccHHHHH
Confidence 89999887653
No 356
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.42 E-value=1.9e-12 Score=114.01 Aligned_cols=183 Identities=22% Similarity=0.225 Sum_probs=132.6
Q ss_pred CcHHHHHHHHhcccCCC--Ccc--C---ChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeEEec----
Q psy5413 79 PTMEMKNYMFNCEVGDD--VYL--E---DPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG---- 147 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~~~--~y~--~---~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~---- 147 (285)
.++++++++.+...... -|. . ..-..++.+..+...+.+.++.+++.+.|++.++.++. .+++++++
T Consensus 39 ~~~e~iea~~~~~~~~v~Le~~l~~g~~~~R~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~--~~~EvVis~g~l 116 (395)
T COG1921 39 YSPEAIEAMKEAMRAPVELETDLKTGKRGARLTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA--EGKEVVVSRGEL 116 (395)
T ss_pred CCHHHHHHHHHHhcccceeeeecccchhhHHHHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc--cCCeEEEEcccc
Confidence 47788888776554211 111 1 12244667777777788999999999999999998875 35566653
Q ss_pred -CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 148 -DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 148 -~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
+.+|........++ |++++.+..... ....+++.+|.+ ++++++-.+.+|..=-...+
T Consensus 117 V~gg~~~v~d~~~~a---------G~~l~EvG~tn~--t~~~d~~~AIne-------~ta~llkV~s~~~~f~~~l~--- 175 (395)
T COG1921 117 VEGGAFRVPDIIRLA---------GAKLVEVGTTNR--THLKDYELAINE-------NTALLLKVHSSNYGFTGMLS--- 175 (395)
T ss_pred ccCCCCChhHHHHHc---------CCEEEEecccCc--CCHHHHHHHhcc-------CCeeEEEEeecccccccccc---
Confidence 24565555544444 999998876433 478999999999 77777666655431023455
Q ss_pred HHHHHHHHHHcCCeEEEeCccC-------Chh-hhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 227 LRELKARCQEHNIPVHMDGARL-------PLA-EVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea~~-------~~~-~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+++++++||+||+++++|.+-. .+. .+..++|++++|..|.|+||.+|+++|++++|+
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~ 241 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIE 241 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHH
Confidence 8889999999999999999864 222 334689999999999999999999999999985
No 357
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=99.38 E-value=9.7e-12 Score=106.96 Aligned_cols=202 Identities=20% Similarity=0.223 Sum_probs=145.9
Q ss_pred CeeeeeccCCcCC-CcHHHHHHHHhcccCCCCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccc----cC
Q psy5413 66 IRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCD----RR 140 (285)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~----~~ 140 (285)
.-++|+-.++-++ .+.....+| ..|+..|+.+..+..|++.+.+.+|.+..+-+.-|-.|-.+.+..++. -+
T Consensus 46 dv~IDLLTDSGTgams~~qwaam---m~GDEAYagsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~p 122 (471)
T COG3033 46 DVFIDLLTDSGTGAMTDKQWAAM---MRGDEAYAGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEP 122 (471)
T ss_pred ceEEEeeccCCcccccHHHHHHH---hccchhhcccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccC
Confidence 3456776665443 233333333 346788887888999999999999999888888888887777776652 13
Q ss_pred CCeEEecCCcceeeecccccccccccccccceeeeeee----------cCCCCCCCHHHHHHHhcccccccCCceEEEEE
Q psy5413 141 DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT----------NQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210 (285)
Q Consensus 141 g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i 210 (285)
|...++...+|+.+...-. +..|...+.++ .+..+.+|++.|++.|++. +.+++..|++
T Consensus 123 g~~~~~~sN~~FdTTr~h~--------~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidev---G~~nvp~I~~ 191 (471)
T COG3033 123 GSKMVAFSNYHFDTTRGHI--------QINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEV---GADNVPYIVL 191 (471)
T ss_pred CccccccccceecchhHHH--------HhcCCccccccccccccccccCCCCCccCHHHHHHHHHHh---CcccCcEEEE
Confidence 4445556677777654221 11233333322 2335678999999999874 4457889999
Q ss_pred ecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-----------------Chh----hhcccCCeEEEecccccC
Q psy5413 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-----------------PLA----EVCASVDTVMFCLSKGLG 269 (285)
Q Consensus 211 ~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-----------------~~~----~~~~~~dv~~~s~sK~l~ 269 (285)
.-++|..||+.++.+.++++.++|++|||+++.|.++. +.. +..+++|-+++|.-|---
T Consensus 192 tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~l 271 (471)
T COG3033 192 TITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGL 271 (471)
T ss_pred EEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccce
Confidence 88999989999999999999999999999999999955 222 233688999999988644
Q ss_pred cceeEEeecCcc
Q psy5413 270 APVGSILAGPEE 281 (285)
Q Consensus 270 ~p~gg~~~~~~~ 281 (285)
.++||+++.+.+
T Consensus 272 vnmGGfl~~~D~ 283 (471)
T COG3033 272 VNMGGFLCFKDD 283 (471)
T ss_pred eccccEEEecCc
Confidence 479999987654
No 358
>KOG0633|consensus
Probab=99.37 E-value=4.9e-12 Score=104.45 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=115.3
Q ss_pred HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCC-eEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413 103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDS-EIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN 179 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 179 (285)
-.+++..++.--+.+. ..+-.+.-+-+...+++.+ -||+ +|+..++++.......++. ++.++.+|.
T Consensus 71 nk~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c-~PGkeKIl~cPPtysMY~v~A~iN---------d~eVvkvpl 140 (375)
T KOG0633|consen 71 NKRLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC-DPGKEKILDCPPTYSMYVVDAAIN---------DAEVVKVPL 140 (375)
T ss_pred cchhhhhcccCCCCCccceEEecCcHHHHHHHHhhee-cCCccceeecCCcceeEEEEeecC---------CceEEEecC
Confidence 3444444444333333 3444445567788888877 5885 5666666665554444444 899999999
Q ss_pred CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh------hhh
Q psy5413 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL------AEV 253 (285)
Q Consensus 180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~------~~~ 253 (285)
+++++++.+++.+.++.+ ..++++++++|.||+ |.....+.+.+|.+.= .++++++||+|..+ ..+
T Consensus 141 ~pdF~lnvdai~evl~~d-----s~iK~~F~tSPgNPt-g~~ik~~di~KiLe~p--~nglVVvDEAYidFsg~~S~~~l 212 (375)
T KOG0633|consen 141 NPDFSLNVDAIAEVLELD-----SKIKCIFLTSPGNPT-GSIIKEDDILKILEMP--DNGLVVVDEAYIDFSGVESRMKL 212 (375)
T ss_pred CCCccccHHHHHHHHhcc-----ccceEEEEcCCCCCC-cccccHHHHHHHHhCC--CCcEEEEeeeeEeeccccccchH
Confidence 999999999999999762 268999999999999 9999988899888743 37899999998822 222
Q ss_pred -cccCCeE-EEecccccCc--ceeEEeecCccc
Q psy5413 254 -CASVDTV-MFCLSKGLGA--PVGSILAGPEEF 282 (285)
Q Consensus 254 -~~~~dv~-~~s~sK~l~~--p~gg~~~~~~~~ 282 (285)
.++.+.+ +.++||.+|. .+.|+.....++
T Consensus 213 V~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~i 245 (375)
T KOG0633|consen 213 VKKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSI 245 (375)
T ss_pred hHhCCceeehhhhhhhcCcceeEeecccccHHH
Confidence 2455654 8999997765 666776665544
No 359
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.36 E-value=9.4e-12 Score=118.54 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=117.6
Q ss_pred CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413 96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174 (285)
Q Consensus 96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~ 174 (285)
...+.-...+.++..|+.+|.++.+|+.+| |.+|.+++.+++ .+||.|+++..+|-+...+..++ |...
T Consensus 190 Ll~~~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~haLils---------ga~P 259 (714)
T PRK15400 190 LLDHSGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSA-PAGSTVLIDRNCHKSLTHLMMMS---------DVTP 259 (714)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCeE
Confidence 344445589999999999999998555555 788888888877 69999999999998887654454 7777
Q ss_pred eeeecCC--C---CCCC-----HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 175 RGVTNQK--D---GTFD-----LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 175 ~~~~~~~--~---~~~d-----~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
+.++... . +.++ .+.++++|.+++++. ++..+++++|+.. |.+++ +++|.++|+.++ +++|
T Consensus 260 VYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak--~p~~~vit~pTYd--G~~yd---~~~I~~~~~~~~--ilvD 330 (714)
T PRK15400 260 IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNAT--WPVHAVITNSTYD--GLLYN---TDFIKKTLDVKS--IHFD 330 (714)
T ss_pred EEecccccccCCccCCCccccCHHHHHHHHHhCcccc--CccEEEEECCCCc--cEecC---HHHHHHHhCCCC--EEEE
Confidence 7665321 1 1234 899999998754321 2346888888877 99999 999999999887 6999
Q ss_pred CccCC------h----hhhcccC---C--eEEEecccccCc-ceeEE
Q psy5413 245 GARLP------L----AEVCASV---D--TVMFCLSKGLGA-PVGSI 275 (285)
Q Consensus 245 ea~~~------~----~~~~~~~---d--v~~~s~sK~l~~-p~gg~ 275 (285)
|||.+ . ..+..++ | +++-|.||.|++ ..+++
T Consensus 331 EAwgah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~ 377 (714)
T PRK15400 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASM 377 (714)
T ss_pred ccchhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccchhHHhH
Confidence 99771 1 1122344 5 679999999988 34443
No 360
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.36 E-value=1.5e-11 Score=117.20 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=118.0
Q ss_pred CccCChhHHHHHHHHHhHcCCCcEEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceee
Q psy5413 96 VYLEDPTCKELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174 (285)
Q Consensus 96 ~y~~~~~~~~l~~~la~~~g~~~~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~ 174 (285)
.....-...+.++..|+.+|.++.+|+.+| |.+|.+++.+++ .+||.|+++..+|-+...+..++ |...
T Consensus 190 Ll~~~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~-~~Gd~VLvdRN~HKSv~~aLils---------ga~P 259 (713)
T PRK15399 190 LLDHTGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAA-PAGSTLLIDRNCHKSLAHLLMMS---------DVVP 259 (713)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhc-CCCCEEEeecccHHHHHHHHHHc---------CCee
Confidence 334445589999999999999998555555 788888888877 69999999999998887654454 7777
Q ss_pred eeeecCC--C---CCCCH-----HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE-EE
Q psy5413 175 RGVTNQK--D---GTFDL-----DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV-HM 243 (285)
Q Consensus 175 ~~~~~~~--~---~~~d~-----~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l-i~ 243 (285)
+.++... . +.++. +.++++|.+++++ .+++++++++|+.. |.+++ +++|.++| |+.+ ++
T Consensus 260 VYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~--~~p~~vvit~pTYd--Gi~yd---~~~I~~~~---g~~~ilv 329 (713)
T PRK15399 260 IWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQA--QWPVHAVITNSTYD--GLLYN---TDWIKQTL---DVPSIHF 329 (713)
T ss_pred EEecccccccCCcCCCChhhccHHHHHHHHHhCCCc--CCceEEEEECCCCC--ceeeC---HHHHHHHh---CCCEEEE
Confidence 7665321 1 12444 9999999875432 24467888898877 99999 88888888 6777 69
Q ss_pred eCccC------Chh----hhcc--cCCeE---EEecccccCc-ceeEEe
Q psy5413 244 DGARL------PLA----EVCA--SVDTV---MFCLSKGLGA-PVGSIL 276 (285)
Q Consensus 244 Dea~~------~~~----~~~~--~~dv~---~~s~sK~l~~-p~gg~~ 276 (285)
||||. +.. .+.. ++|.+ +-|.||.|++ ..++++
T Consensus 330 DEAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~i 378 (713)
T PRK15399 330 DSAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLI 378 (713)
T ss_pred eccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheee
Confidence 99977 111 1112 46766 9999999998 556555
No 361
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=99.32 E-value=3.4e-11 Score=101.38 Aligned_cols=196 Identities=22% Similarity=0.254 Sum_probs=145.5
Q ss_pred cHHHHHHHHhccc------CCCCcc-CChhHHHHHHHHHhHcCCCcE---EEcCChHHHHHHHHHHccccCCCeEEe--c
Q psy5413 80 TMEMKNYMFNCEV------GDDVYL-EDPTCKELQEKAAKLAGKEAA---IFVPSGTMGNLIAIMTHCDRRDSEIIV--G 147 (285)
Q Consensus 80 ~~~v~~a~~~~~~------~~~~y~-~~~~~~~l~~~la~~~g~~~~---~~~~~Gs~a~~~al~~~~~~~g~~vi~--~ 147 (285)
...|++|.++... +...|+ .+-..+.|++-.|+.+|.+.+ ...-||+.|+..|+...+ +|||+.+. .
T Consensus 37 q~kVL~AF~~~rvs~~hf~~stGYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~L-RpgDell~i~G 115 (416)
T COG4100 37 QKKVLEAFRHHRVSESHFTGSTGYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGIL-RPGDELLYITG 115 (416)
T ss_pred HHHHHHHHHhcccchhccCCCCCCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhcc-CCCCeEEEecC
Confidence 4477888775543 234666 345678899999999999986 356689999999999987 69998654 2
Q ss_pred CCcceeeecccccccccccc-cccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYS-QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW 226 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~ 226 (285)
.+|- ...+..++..+..-+ ..+|....-++...++.+|.+.++..+++ +||+|.+.-..+...--.++-++
T Consensus 116 ~PYD-TLeevIG~rg~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~~-------~tkli~IQRS~GY~~RpS~~I~e 187 (416)
T COG4100 116 SPYD-TLEEVIGLRGEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAISD-------RTKLIGIQRSKGYAWRPSLSIAE 187 (416)
T ss_pred Ccch-hHHHHhccCCCCcccHHHhCcceeecccccCCcccHHHHHHhcCc-------cceEEEEEeccCcCCCCcccHHH
Confidence 3331 111211111100000 24688888889888999999999999998 89999999888765444566678
Q ss_pred HHHHHHHHHH--cCCeEEEeCccCChhh----hcccCCeEEEecccccCc---ceeEEeecCccccc
Q psy5413 227 LRELKARCQE--HNIPVHMDGARLPLAE----VCASVDTVMFCLSKGLGA---PVGSILAGPEEFIQ 284 (285)
Q Consensus 227 l~~i~~la~~--~gi~li~Dea~~~~~~----~~~~~dv~~~s~sK~l~~---p~gg~~~~~~~~i~ 284 (285)
+++++.+.|+ .++++++|.+|+.+.+ ..-++|++..|+-|+-|| -.||++++++++++
T Consensus 188 I~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve 254 (416)
T COG4100 188 IEEMITFVKEINPNVIVFVDNCYGEFVEEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE 254 (416)
T ss_pred HHHHHHHHHhcCCCEEEEEeccchhhhhccCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence 8999988887 4899999999994433 335889999999999888 68999999999876
No 362
>KOG1358|consensus
Probab=99.31 E-value=9.5e-12 Score=108.02 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=143.6
Q ss_pred cCCeeeeeccCCcCC--CcHHHHHHHH----hcccCC----CCccCChhHHHHHHHHHhHcCCCcEEEcCChHHHHHHHH
Q psy5413 64 VNIRTVDIRSDTISK--PTMEMKNYMF----NCEVGD----DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAI 133 (285)
Q Consensus 64 ~~~~~~~~~~~~~~~--~~~~v~~a~~----~~~~~~----~~y~~~~~~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al 133 (285)
.|+++++|++.|+.. .++++.+... +...|. ..|++-..+..+++.|++++|.+..++.+.|-.++..++
T Consensus 92 ~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGPrGFYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~i 171 (467)
T KOG1358|consen 92 DGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGPRGFYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAI 171 (467)
T ss_pred cCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCCCcccccceeecccHHHHHHhhCCcceeeeccccchhhhcc
Confidence 578899999988876 5666666644 333331 257766778899999999999999999999999999999
Q ss_pred HHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccc--cc-cCC---ceEE
Q psy5413 134 MTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD--NI-HCA---STSL 207 (285)
Q Consensus 134 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~--~~-~~~---~~~~ 207 (285)
.+++ ++||.++.+...+........++ .-.++.+. +.|+++++..+.+.. +. ++. .-+.
T Consensus 172 pafs-KrGDIi~~de~~nfaIq~GlqlS---------RS~i~~Fk-----hndm~~lerll~E~~~~~~K~~k~~~~Rrf 236 (467)
T KOG1358|consen 172 PAFS-KRGDIIFVDEAVNFAIQKGLQLS---------RSTISYFK-----HNDMEDLERLLPEQEDEDQKNPKKALTRRF 236 (467)
T ss_pred hhhh-ccCcEEEEehhhhHHHHHHHhhh---------hheeEEec-----CCCHHHHHHhccCcchhhhhccccccceEE
Confidence 9987 79998777776654332211122 22333333 458888887764421 11 111 1578
Q ss_pred EEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Ch-----hhhc-------ccCCeEEEecccccCcceeE
Q psy5413 208 VCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PL-----AEVC-------ASVDTVMFCLSKGLGAPVGS 274 (285)
Q Consensus 208 v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~-----~~~~-------~~~dv~~~s~sK~l~~p~gg 274 (285)
|+++...-++ |.++| +++|.++..+|...+|+||.+. +. ...+ ...|+++.++.-.++. .||
T Consensus 237 iv~EGl~~N~-g~i~p---l~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas-~Gg 311 (467)
T KOG1358|consen 237 IVVEGLYANT-GDICP---LPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALAS-GGG 311 (467)
T ss_pred EEEEeeccCC-Ccccc---cHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccc-cCc
Confidence 9999977666 99999 9999999999999999999966 11 1111 4567888888888876 789
Q ss_pred EeecCcccc
Q psy5413 275 ILAGPEEFI 283 (285)
Q Consensus 275 ~~~~~~~~i 283 (285)
+++|+.-++
T Consensus 312 Fc~G~~~i~ 320 (467)
T KOG1358|consen 312 FCAGKSFIA 320 (467)
T ss_pred eeecceeeE
Confidence 999965433
No 363
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.30 E-value=1.2e-11 Score=111.16 Aligned_cols=182 Identities=10% Similarity=0.042 Sum_probs=118.4
Q ss_pred cCCCcHHHHHHHHhcccC------------CCCccCChhHHHHHHHHHhHcCC-C--cE-EEcCChHHHHHHHHHHcccc
Q psy5413 76 ISKPTMEMKNYMFNCEVG------------DDVYLEDPTCKELQEKAAKLAGK-E--AA-IFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 76 ~~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~g~-~--~~-~~~~~Gs~a~~~al~~~~~~ 139 (285)
|...+++|++|+.+...+ +..-.....+.++++.++++++. + .+ ++.++|+.|+++++..++ .
T Consensus 11 P~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl~-~ 89 (360)
T PRK05355 11 PAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNLL-G 89 (360)
T ss_pred CCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhcC-C
Confidence 355788999998876421 11111125688999999999985 2 23 666889999999999988 4
Q ss_pred CCCeEEec-CCcceeeecccccccccccccccceeeeeeecCC-CCCCCHHHHHH-HhcccccccCCceEEEEEecccCC
Q psy5413 140 RDSEIIVG-DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK-DGTFDLDEMEA-KFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 140 ~g~~vi~~-~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~-~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
+|+++++. ...+. ..+..++ +.+|.. ..+..++ .+..+..++++ .+++ ++++|.+++.-+.
T Consensus 90 ~g~~~l~i~~G~fg--~r~~~~a------~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~-------~~~~V~~th~eTs 153 (360)
T PRK05355 90 GGKKADYVDTGSWS--KKAIKEA------KKYGEV-NVAASSEDDGFTYIPPLDEWQLSD-------DAAYVHYTSNETI 153 (360)
T ss_pred CCCeEEEEECCHHH--HHHHHHH------HHhCCc-eEEecccccCCCCCCChhhccCCC-------CCCEEEEccCCCc
Confidence 77765543 22111 1122233 344544 4444332 44445555555 6655 6789999886666
Q ss_pred CCeeeC-CHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 217 CGGTVL-PMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 217 ~gG~~~-~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
| |.+. + +++| +|+++++|.+++ +...+ .+..|++++|.+|++|.|-.|++..+++.++
T Consensus 154 t-Gv~~~~---i~~i------~g~l~vVDavss~g~~~idv~~~d~~~~ssqK~lgP~Glg~l~~s~~~l~ 214 (360)
T PRK05355 154 D-GTEFHE---LPDT------GDVPLVADMSSDILSRPIDVSKFGLIYAGAQKNIGPAGLTIVIVREDLLG 214 (360)
T ss_pred c-eEecCc---cccc------CCCcEEEEcCccccCccCCHHHccEEEEeccccccCCceEEEEECHHHHh
Confidence 6 8998 5 6666 899999999988 22221 2344788999999997444577777777664
No 364
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.30 E-value=1.1e-11 Score=111.50 Aligned_cols=180 Identities=13% Similarity=0.028 Sum_probs=112.0
Q ss_pred CCCcHHHHHHHHhcc-----cCCCCccCChhHHHHHHHHHhHcCCC---cEEE-cCChHHHHHHHHHHccccCCCeEEec
Q psy5413 77 SKPTMEMKNYMFNCE-----VGDDVYLEDPTCKELQEKAAKLAGKE---AAIF-VPSGTMGNLIAIMTHCDRRDSEIIVG 147 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~-----~~~~~y~~~~~~~~l~~~la~~~g~~---~~~~-~~~Gs~a~~~al~~~~~~~g~~vi~~ 147 (285)
...+|++++++.+.. .+|........+.+.++.++++++.+ .++| ++|||.+++.++..+.. + +.+++.
T Consensus 12 ~~~~~~v~~a~~~~~~~~~~~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~~-~-~~l~i~ 89 (361)
T TIGR01366 12 SKVRLEQLQALTTTAASLFGTSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLIE-K-KSLHLS 89 (361)
T ss_pred cCCCHHHHHHHHhcCccccccCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhccc-c-cccEEe
Confidence 335889999987642 12332223456888999999999873 3566 47799999999998763 2 333333
Q ss_pred CCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHH
Q psy5413 148 DCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWL 227 (285)
Q Consensus 148 ~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l 227 (285)
...|+.... ..+. .....+ ++..++.++...++. .+.+ ++++|.+++..|.+ |.+.| +
T Consensus 90 ~G~~~~~~~--~~a~---~~~~~~-~~~~~~~~~~~~~~~-----~~~~-------~~~lV~~~h~et~t-G~~~p---i 147 (361)
T TIGR01366 90 FGEFSSKFA--KAVK---LAPWLG-EPIIVTADPGSAPEP-----QADP-------GVDVIAWAHNETST-GVAVP---V 147 (361)
T ss_pred cCHHHHHHH--HHHH---hhhccC-CceEEecCCCCCCCC-----ccCC-------CCCEEEEcccCCcc-ceecc---c
Confidence 333322111 1110 000112 344444433322222 2333 79999999988888 99999 7
Q ss_pred HHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEE-eecCcccc
Q psy5413 228 RELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSI-LAGPEEFI 283 (285)
Q Consensus 228 ~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~-~~~~~~~i 283 (285)
++| +|++|+++++|.+++ +...+ .+.+|+++++.+|++++|.|.+ ++.+++++
T Consensus 148 ~~I---~~~~g~~~iVDavqs~g~~~idv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~ 203 (361)
T TIGR01366 148 RRP---EGSDDALVVIDATSGAGGLPVDIAETDVYYFAPQKNFASDGGLWLAIMSPAAL 203 (361)
T ss_pred ccc---cccCCCeEEEEcCccccCCCCCHHHCCEEEEEchhhcCCCCceEEEEECHHHH
Confidence 776 588999999999988 22111 1248999999999999864433 33455544
No 365
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.29 E-value=8.1e-12 Score=112.14 Aligned_cols=182 Identities=10% Similarity=0.070 Sum_probs=113.6
Q ss_pred CCCcHHHHHHHHhcccC-----CCCccC-------ChhHHHHHHHHHhHcCCC---cEEEcCC-hHHHHHHHHHHccc--
Q psy5413 77 SKPTMEMKNYMFNCEVG-----DDVYLE-------DPTCKELQEKAAKLAGKE---AAIFVPS-GTMGNLIAIMTHCD-- 138 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~-----~~~y~~-------~~~~~~l~~~la~~~g~~---~~~~~~~-Gs~a~~~al~~~~~-- 138 (285)
...+++|++++.+.... ...|.. ...+.++++.++++++.+ .++|+.| ||+|++.++..+..
T Consensus 8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~~ 87 (355)
T cd00611 8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGDK 87 (355)
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCCC
Confidence 44678999998876521 111111 155889999999999852 3577766 99999999999863
Q ss_pred cCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCC-C-HHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 139 RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF-D-LDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 139 ~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-d-~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
++++.|++....|.. ..++ +..|.++..++.++++.. + .+..+..+++ ++++|.+++..|.
T Consensus 88 ~~~~~i~~g~~~~~~----~~~a------~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~lV~~~h~~t~ 150 (355)
T cd00611 88 GTADYVVTGAWSAKA----AKEA------KRYGGVVVIVAAKEEGKYTKIPDVETWDLAP-------DAAYVHYCSNETI 150 (355)
T ss_pred CeEEEEECCHHHHHH----HHHH------HhcCCCcEEEecccccCCCCCCCHhhcCCCC-------CCCEEEEeCCccc
Confidence 134444432222211 1122 345777777776433222 3 2222233444 7899999998888
Q ss_pred CCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 217 ~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+ |...+ ++++.||+++++|.+++ +...+ .+..|+.+.+.+|++|.|-.|+++.++++++
T Consensus 151 t-G~~~~--------~i~~~~g~~~~VDa~qs~g~~~idv~~~~~~~ss~~K~lGP~G~g~l~~~~~~~~ 211 (355)
T cd00611 151 H-GVEFD--------EVPDTGGVPLVADMSSNILSRPIDVSKFGVIYAGAQKNLGPAGVTVVIVRKDLLG 211 (355)
T ss_pred c-cEEcc--------eecccCCCeEEEEccccccCCCCCHHHhCEEEeecccccCCCceEEEEECHHHHh
Confidence 8 67643 34456999999999988 22222 2334556676999987444577777776654
No 366
>KOG0258|consensus
Probab=99.29 E-value=3.2e-11 Score=104.77 Aligned_cols=171 Identities=13% Similarity=0.121 Sum_probs=123.8
Q ss_pred CCCccCChhHHHHHHHHHhHcCC--------CcEEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccc
Q psy5413 94 DDVYLEDPTCKELQEKAAKLAGK--------EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSV 165 (285)
Q Consensus 94 ~~~y~~~~~~~~l~~~la~~~g~--------~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~ 165 (285)
...|..+.+..-+|+.+|+++.. +.+++++++|.|+...+.+++..+.+-|+++-+-+.-+ .+.++
T Consensus 106 ~GaYS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLY--sAti~---- 179 (475)
T KOG0258|consen 106 LGAYSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLY--SATIS---- 179 (475)
T ss_pred ccccccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchh--HHHHH----
Confidence 35777778888899999998732 23478888899999999998866666677764332211 11122
Q ss_pred cccccceeeeeeec--CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 166 YSQIGRVLMRGVTN--QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 166 ~~~~~g~~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
..|...+..-. ..++.+|.++|++.+++.. .+.+++++++-||-||| |.+.+++.+++|..+|.++|+.|+.
T Consensus 180 ---l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~--k~i~~r~lvvINPGNPT-Gqvls~e~ie~i~~fa~~~~l~lla 253 (475)
T KOG0258|consen 180 ---LLGGTQVPYYLDEESNWSLDVAELERSVDEAR--KGINPRALVVINPGNPT-GQVLSEENIEGIICFAAEEGLVLLA 253 (475)
T ss_pred ---HhCCcccceeeccccCCCCCHHHHHHHHHHHh--ccCCceEEEEECCCCcc-chhhcHHHHHHHHHHHHHcCeEEec
Confidence 34555554443 3467899999999998754 34478888888999999 9999999999999999999999999
Q ss_pred eCccC-----------Chh----hhc-ccCC-e--E-EEecccccCc---ceeEEe
Q psy5413 244 DGARL-----------PLA----EVC-ASVD-T--V-MFCLSKGLGA---PVGSIL 276 (285)
Q Consensus 244 Dea~~-----------~~~----~~~-~~~d-v--~-~~s~sK~l~~---p~gg~~ 276 (285)
||+|- ++. .+. .+.| + + ..+.||++.+ .+||++
T Consensus 254 DEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYm 309 (475)
T KOG0258|consen 254 DEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYM 309 (475)
T ss_pred hHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCee
Confidence 99954 111 111 2333 2 2 7888998877 888886
No 367
>KOG0629|consensus
Probab=99.28 E-value=2.3e-11 Score=106.72 Aligned_cols=156 Identities=21% Similarity=0.291 Sum_probs=114.6
Q ss_pred HHHHHHHhHcCCC---cEEEcCChHHHHHHHHHHccccC--C----------C-eEEecCCcceeeeccccccccccccc
Q psy5413 105 ELQEKAAKLAGKE---AAIFVPSGTMGNLIAIMTHCDRR--D----------S-EIIVGDCSHIMLWEQGGASQTSVYSQ 168 (285)
Q Consensus 105 ~l~~~la~~~g~~---~~~~~~~Gs~a~~~al~~~~~~~--g----------~-~vi~~~~~h~~~~~~~~~~~~~~~~~ 168 (285)
++-.++.+..|-+ ..+|+++|+-+|.-++.++..+. + + .++.++.+|++...+++.- .
T Consensus 145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~l------g 218 (510)
T KOG0629|consen 145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFL------G 218 (510)
T ss_pred HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHh------c
Confidence 3334445555544 35999999999999998875321 1 1 1345789999988766555 3
Q ss_pred ccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 169 IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 169 ~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
.....++.++.++.+.+++++||+.|.+. +..+..+.+|-.+..+-.- |...| |..|+++|++|++|+|+|+|+.
T Consensus 219 ~gtd~c~~v~t~e~Gkm~~~dLe~kile~-k~kg~~Pf~vnaTaGTTV~-GAFDd---L~~iadiC~k~~lWmHvDAAwG 293 (510)
T KOG0629|consen 219 LGTDHCIKVKTDERGKMIPDDLEKKILEA-KAKGGVPFFVNATAGTTVL-GAFDD---LNGIADICEKHKLWMHVDAAWG 293 (510)
T ss_pred cCCceeEEecccccCccchHHHHHHHHHH-HhcCCCCeEEEecCCceee-eccCc---HHHHHHHHHhcCEEEEeecccc
Confidence 44578889999899999999999999773 3333345666666544444 77777 9999999999999999999988
Q ss_pred C-h---------hhhcccCCeEEEecccccCcc
Q psy5413 249 P-L---------AEVCASVDTVMFCLSKGLGAP 271 (285)
Q Consensus 249 ~-~---------~~~~~~~dv~~~s~sK~l~~p 271 (285)
+ + ..-.+.+|.++.+.||++|.|
T Consensus 294 GglLmS~k~R~kl~Giera~SvtwnpHK~~gap 326 (510)
T KOG0629|consen 294 GGLLMSRKHRHKLTGIERANSVTWNPHKLMGAP 326 (510)
T ss_pred cccccChhhHhhccCccccCceeecHHHhhcCc
Confidence 3 1 112367899999999999984
No 368
>KOG2467|consensus
Probab=99.26 E-value=8.7e-11 Score=101.32 Aligned_cols=192 Identities=16% Similarity=0.156 Sum_probs=129.3
Q ss_pred eeccCCcCCCcHHHHHHHHhcccC--------CCCccCChhHHHHHHHH----HhHcCCCcE-----EEcCChHHHHHHH
Q psy5413 70 DIRSDTISKPTMEMKNYMFNCEVG--------DDVYLEDPTCKELQEKA----AKLAGKEAA-----IFVPSGTMGNLIA 132 (285)
Q Consensus 70 ~~~~~~~~~~~~~v~~a~~~~~~~--------~~~y~~~~~~~~l~~~l----a~~~g~~~~-----~~~~~Gs~a~~~a 132 (285)
...++|++ +..|++|+-..+.+ ...|+.++.++++|... .+.++.+.. +..-|||-||+++
T Consensus 45 LIaSENFt--s~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfav 122 (477)
T KOG2467|consen 45 LIASENFT--SRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAV 122 (477)
T ss_pred Eeecccch--HHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHH
Confidence 34567665 78899998766653 34566777666665433 445677652 7778999999999
Q ss_pred HHHccccCCCeEEe---cCCc---ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceE
Q psy5413 133 IMTHCDRRDSEIIV---GDCS---HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTS 206 (285)
Q Consensus 133 l~~~~~~~g~~vi~---~~~~---h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~ 206 (285)
..+++ +|++++.- ++.. |++....-.++..+. .+.-....+.. ..+.+|.+.||+.-... +++
T Consensus 123 Ytall-~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~Si---yFeSmPYkv~~-~TG~IDYD~Le~~A~~f------rPk 191 (477)
T KOG2467|consen 123 YTALL-KPHERIMGLDLPSGGHLSHGYQTPTKKISATSI---YFESMPYKVDP-STGYIDYDKLEKTATLF------RPK 191 (477)
T ss_pred Hhhhc-CCCCeeeeccCCCCCccccccccCCceeeeeee---ecccCceeeCC-CCCceehHHHHHHHHhc------CCc
Confidence 99988 68887654 3333 443333222321111 11222222222 46779999999876653 667
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh------hhcccCCeEEEecccccCcceeEEeecC
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA------EVCASVDTVMFCLSKGLGAPVGSILAGP 279 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~------~~~~~~dv~~~s~sK~l~~p~gg~~~~~ 279 (285)
+|+. ..+.. -..++ +.+++++|.+.|.++++|-+|. ++. .-.+++|+|+.+.||.|-||+||.+.-+
T Consensus 192 ~iia-G~SaY--~R~~D---YaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg~mIFyR 265 (477)
T KOG2467|consen 192 LIIA-GTSAY--SRLID---YARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRGAMIFYR 265 (477)
T ss_pred EEEe-ccccc--hhhcc---HHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcceeEEEe
Confidence 7665 33333 35666 9999999999999999999998 222 2247999999999999999999999865
Q ss_pred c
Q psy5413 280 E 280 (285)
Q Consensus 280 ~ 280 (285)
+
T Consensus 266 k 266 (477)
T KOG2467|consen 266 K 266 (477)
T ss_pred c
Confidence 4
No 369
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.25 E-value=6.6e-11 Score=108.82 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=121.8
Q ss_pred ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeee
Q psy5413 100 DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVT 178 (285)
Q Consensus 100 ~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~ 178 (285)
.-.+.+.++..|+.+|.++. +++||.|.||.+++.+++ .+||.|+++...|-+......++ |...+.+.
T Consensus 69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~-~~GD~VLvdRN~HKSi~~glila---------Ga~Pvyl~ 138 (557)
T COG1982 69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAVL-TPGDKVLVDRNCHKSIHHGLILA---------GATPVYLE 138 (557)
T ss_pred CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhc-CCCCEEEecCCccHHHHHHHHHc---------CCceEEec
Confidence 33489999999999999987 556666788888888877 69999999999998776543344 66666554
Q ss_pred cC--C----CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----
Q psy5413 179 NQ--K----DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---- 248 (285)
Q Consensus 179 ~~--~----~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---- 248 (285)
.. + -+.++.+.+++.+.++... -+++++.+|+.. |.+++ +++|.+.++++++|+.+|+++.
T Consensus 139 p~~np~~gi~ggI~~~~~~~~l~~~~~~----~k~~vitnpTYd--Gv~~n---~~~i~~~~~~~~a~v~~deah~~~~~ 209 (557)
T COG1982 139 PSRNPLYGIIGGIPLETFKEALLAHPDA----EKLAVITNPTYD--GVCYN---LRKIVELLHHYGAWVLYDEAHPAHFD 209 (557)
T ss_pred CCCCccccccCCCCHHHHHHHHHhChhh----heeEEEecCccc--eEeec---HHHHHHHHhhcCceEEhhhcCccccc
Confidence 32 2 1358999999988774221 178889898887 99999 9999999999999999999976
Q ss_pred --Ch---hhhcccCCeEEEecccccCc-ceeEEee
Q psy5413 249 --PL---AEVCASVDTVMFCLSKGLGA-PVGSILA 277 (285)
Q Consensus 249 --~~---~~~~~~~dv~~~s~sK~l~~-p~gg~~~ 277 (285)
++ ......+|+++.|.||.+++ ..+..+-
T Consensus 210 ~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iH 244 (557)
T COG1982 210 FSPMLPESALNGGADFVTQSTHKLLAALSQASMIH 244 (557)
T ss_pred ccccCcchhhhcCceEEEechhhhhhhhhhhHHHh
Confidence 11 11225678889999999988 4555543
No 370
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.17 E-value=5.1e-10 Score=110.96 Aligned_cols=156 Identities=16% Similarity=0.100 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413 102 TCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 102 ~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (285)
...++++.+++++|.+. +-+++++|.+.++++.+...+++ ++|++++..|..+..... .+.+..|.+++.+
T Consensus 122 al~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~-----t~a~~~G~ev~~~ 196 (954)
T PRK05367 122 ALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLR-----TRAEPLGIEVVVG 196 (954)
T ss_pred HHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHH-----HHHHhCCCEEEEe
Confidence 36788999999999885 48999999999988876543343 789998888865432110 1114568898888
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---Ch-hhh
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL---PL-AEV 253 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~---~~-~~~ 253 (285)
+... |++ .+ ++.++++..|+.. |.+.| +++|+++||++|+++++|..+. .+ ..-
T Consensus 197 ~~~~----d~~------~~-------~~~~vlvq~p~~~--G~i~d---~~~i~~~ah~~Gal~~vda~~~Al~~l~~pg 254 (954)
T PRK05367 197 DAAK----ALD------HD-------DVFGVLLQYPGTS--GEVRD---YTALIAAAHARGALVAVAADLLALTLLTPPG 254 (954)
T ss_pred cCcc----CCC------cc-------cEEEEEEecCCCC--eeecc---HHHHHHHHHHcCCEEEEEehhhhccCCCChh
Confidence 8632 111 22 6778888787655 89999 9999999999999999999653 22 222
Q ss_pred cccCCeEEEecccc-----cCcceeEEeecCccccc
Q psy5413 254 CASVDTVMFCLSKG-----LGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 254 ~~~~dv~~~s~sK~-----l~~p~gg~~~~~~~~i~ 284 (285)
..++|+++.+.+|| +|||..|++..++++++
T Consensus 255 e~GaDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r 290 (954)
T PRK05367 255 EMGADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKR 290 (954)
T ss_pred hcCCCEEEeeCcccCCCCCCCCCCEEEEEECHHHHh
Confidence 35899999999999 77898899988887654
No 371
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.11 E-value=3e-10 Score=101.65 Aligned_cols=157 Identities=10% Similarity=0.014 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHhHcCCC---cEEEc-CChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeee
Q psy5413 101 PTCKELQEKAAKLAGKE---AAIFV-PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~---~~~~~-~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 176 (285)
..+.++++.++++++.+ .++++ .|||.|+++++..+. .+|+++++.....+ ...+..++ +..|. +..
T Consensus 37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~-~~~~~~l~i~~G~f-g~r~~~~a------~~~g~-~~~ 107 (349)
T TIGR01364 37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL-AEGKVADYIVTGAW-SKKAAKEA------KKYGV-VNV 107 (349)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC-CCCCeEEEEECCHH-HHHHHHHH------HHhCC-cEE
Confidence 45778899999999852 25555 569999999999987 47887654322211 11122333 44566 555
Q ss_pred eecC----CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh
Q psy5413 177 VTNQ----KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA 251 (285)
Q Consensus 177 ~~~~----~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~ 251 (285)
+..+ +....++++++ +++ ++++|.+.+.-+.| |...+ ++++.+|+++++|.+++ +..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~--~~~-------~~~~v~~th~ETst-Gv~~~--------~l~~~~~~l~iVDavss~g~~ 169 (349)
T TIGR01364 108 VASGKEGNYTKIPDPSTWE--ISE-------DAAYVHYCANETIH-GVEFR--------ELPDVKNAPLVADMSSNILSR 169 (349)
T ss_pred EeccccCCCCCCCCHHhcC--CCC-------CCCEEEEcCCCCcc-cEecc--------eecccCCCeEEEEccccccCc
Confidence 5432 22245666555 233 67899998877777 78765 56667899999999988 222
Q ss_pred hh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 252 EV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 252 ~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
.+ .+..|+++++.+|+||.|-.|+++.+++.++
T Consensus 170 ~id~~~~d~~~~ssqK~lgP~Glg~l~~s~~~~~ 203 (349)
T TIGR01364 170 PIDVSKFGLIYAGAQKNIGPAGLTVVIVRKDLLG 203 (349)
T ss_pred cCCHHHccEEEEecccccCCCceEEEEECHHHHh
Confidence 21 2345788999999997554577777776654
No 372
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=99.09 E-value=4.4e-09 Score=94.97 Aligned_cols=156 Identities=20% Similarity=0.238 Sum_probs=104.3
Q ss_pred hHHHHHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccccCC--CeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413 102 TCKELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRRD--SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 102 ~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~~~g--~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (285)
...+++..+++++|.+.+ -+.++++.+-++++.+....+. ++++++...|..+.. +-..|....|.+++.+
T Consensus 111 ~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~~~~~~~vlv~~~~hP~~~~-----v~~t~a~~~g~~iv~~ 185 (429)
T PF02347_consen 111 ALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRATKRKRNKVLVPESLHPQTRA-----VLRTYAAPLGIEIVEV 185 (429)
T ss_dssp HHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHHTT---EEEEETTS-CHHHH-----HHHHHCCHCCEEEEEE
T ss_pred HHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhcccCCcEEEEcCCcChhhHH-----HHHHhhhhCCeEEEEe
Confidence 377999999999999964 6777777777766665433233 478899888865533 1113335569999999
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----Chh-h
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLA-E 252 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~-~ 252 (285)
+..+++..| ++ ++++|++++|+.. |.+-+ +++|++++|++|.++++ .+-. .+. .
T Consensus 186 ~~~~~~~~d--------~~-------~~a~v~vq~Pn~~--G~~ed---~~~i~~~~h~~gal~~~-~ad~~aL~~l~~P 244 (429)
T PF02347_consen 186 PLDEDGTTD--------DD-------DTAAVMVQNPNTF--GVFED---IKEIADIAHAAGALVIV-GADPNALGGLKSP 244 (429)
T ss_dssp -BBTTCSB---------ST-------TEEEEEEESS-TT--SB--T---HHHHHHHHHHTT-EEEE-CGGCCGCCTC--G
T ss_pred cccccCCcc--------cc-------CeEEEEeecCCCC--ceEee---HHHHHHHHHHcCCEEEE-ecCHHHHhCcCCh
Confidence 986666555 44 8999999999987 89999 99999999999999998 6633 111 1
Q ss_pred hcccCCeEEEecccccCc------ceeEEeecCccccc
Q psy5413 253 VCASVDTVMFCLSKGLGA------PVGSILAGPEEFIQ 284 (285)
Q Consensus 253 ~~~~~dv~~~s~sK~l~~------p~gg~~~~~~~~i~ 284 (285)
-..++|++ .+.+|.||. |..|+++.++++++
T Consensus 245 ge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~l~r 281 (429)
T PF02347_consen 245 GEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVREDLVR 281 (429)
T ss_dssp GGGT-SEE-EECCTTTT---CCC-S--EEEEE-GGGGG
T ss_pred hhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhhhhh
Confidence 23589999 444886544 88899999888765
No 373
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.07 E-value=2.1e-09 Score=106.46 Aligned_cols=179 Identities=16% Similarity=0.080 Sum_probs=122.6
Q ss_pred CcHHHHHHHHhcccC---CCCccC------ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCC--CeEE
Q psy5413 79 PTMEMKNYMFNCEVG---DDVYLE------DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRD--SEII 145 (285)
Q Consensus 79 ~~~~v~~a~~~~~~~---~~~y~~------~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g--~~vi 145 (285)
.++.+++++.+...- ...|.. -+...++++.+++++|.+. +-++.++|.+.++++.+....+| ++|+
T Consensus 117 ~P~~v~~~i~~~~~~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~~~~g~~~~Vl 196 (993)
T PLN02414 117 VPPVILRNILENPGWYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNILKGKKKKFL 196 (993)
T ss_pred CCHHHHHHHHhChHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHhcccCCCCEEE
Confidence 345665777654431 223321 1236788999999999874 68999999999988876543444 5688
Q ss_pred ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413 146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~ 225 (285)
+++..|..+.... ..+.+..|++++.++... . + ...+ .+..+++..|++. |.+.|
T Consensus 197 Vs~~~hP~~~~v~-----~t~a~~~GieV~~v~~~~-~--~------~~~~-------~v~~vlvq~P~~~--G~v~d-- 251 (993)
T PLN02414 197 IASNCHPQTIDVC-----QTRADGLGLEVVVADEKD-F--D------YSSG-------DVCGVLVQYPATD--GEVLD-- 251 (993)
T ss_pred EcCccCHhHHHHH-----HHhhhhcCCEEEEecchh-h--c------cccC-------ceEEEEEecCCCC--eEEcC--
Confidence 8888876543211 011245688888887621 0 1 1122 4667777777665 99999
Q ss_pred HHHHHHHHHHHcCCeEEEeCccC----Chh-hhcccCCeEEEeccccc-----CcceeEEeecCccccc
Q psy5413 226 WLRELKARCQEHNIPVHMDGARL----PLA-EVCASVDTVMFCLSKGL-----GAPVGSILAGPEEFIQ 284 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea~~----~~~-~~~~~~dv~~~s~sK~l-----~~p~gg~~~~~~~~i~ 284 (285)
+++|+++||++|+++++ .++. .+. .-..++|+++.+.+||+ |||..|++..++++.+
T Consensus 252 -v~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r 318 (993)
T PLN02414 252 -YAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKR 318 (993)
T ss_pred -HHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHh
Confidence 99999999999999999 5544 232 22358999999999997 6677799988877643
No 374
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.02 E-value=1.2e-09 Score=98.16 Aligned_cols=178 Identities=15% Similarity=0.087 Sum_probs=114.7
Q ss_pred CcHH-HHHHHHhcccCCC--CccCChhHHHHHHHHHhHcCCC--c--EEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413 79 PTME-MKNYMFNCEVGDD--VYLEDPTCKELQEKAAKLAGKE--A--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH 151 (285)
Q Consensus 79 ~~~~-v~~a~~~~~~~~~--~y~~~~~~~~l~~~la~~~g~~--~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h 151 (285)
.+|. +.+++.+...+.. .-.....+.++++.+.++++.+ . .++..|||.++++++..++.++|+.+++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~~~g~~vLv~g-~F 92 (374)
T TIGR01365 14 KRPGWSIEELKNAPLGRSHRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLGCRGVDVLAWE-SF 92 (374)
T ss_pred CCchhhHHHHhhhhcccCcCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCCCCCCeEEEEC-HH
Confidence 4565 7777776655422 2223355778899999999853 2 367899999999999998844777777643 21
Q ss_pred eeeeccc-ccccccccccccce-eeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHH
Q psy5413 152 IMLWEQG-GASQTSVYSQIGRV-LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229 (285)
Q Consensus 152 ~~~~~~~-~~~~~~~~~~~~g~-~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~ 229 (285)
...+. .++ +..|. .+..+..++...+|+++++. ++ . +.++.+-|++ |...| +++
T Consensus 93 --G~r~~~eia------~~~g~~~v~~l~~~~g~~~~~~~ve~--~~-------~--v~~vhnETST--Gv~np---v~~ 148 (374)
T TIGR01365 93 --GKGWVTDVT------KQLKLPDVRVLEAEYGKLPDLKKVDF--KN-------D--VVFTWNGTTS--GVRVP---NGD 148 (374)
T ss_pred --HHHHHHHHH------HhcCCCCcEEEcCCCCCCCCHHHcCC--CC-------C--EEEecCCCch--heecc---ccc
Confidence 12222 233 33466 35566665666789999872 22 2 3344344443 99999 766
Q ss_pred HHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCccee-EEeecCcccc
Q psy5413 230 LKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAPVG-SILAGPEEFI 283 (285)
Q Consensus 230 i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p~g-g~~~~~~~~i 283 (285)
++..+ +++++|+|.+-+ +...-.+++|+++.+..|+|++|-| ++++-+++.+
T Consensus 149 i~~~~--~~~lliVDavSs~g~~~l~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al 203 (374)
T TIGR01365 149 FIPAD--REGLTICDATSAAFAQDLDYHKLDVVTFSWQKVLGGEGAHGMLILSPRAV 203 (374)
T ss_pred ccccc--CCCcEEEEccchhcCCCCChhHCcEEEEechhccCCCCceEEEEECHHHH
Confidence 65322 589999999966 2222223599999999999999544 4666665544
No 375
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=98.95 E-value=1.9e-08 Score=88.98 Aligned_cols=192 Identities=17% Similarity=0.141 Sum_probs=131.3
Q ss_pred cCCcCCCcHHHHH-HHHhcccCCCCccC---------ChhHHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccC
Q psy5413 73 SDTISKPTMEMKN-YMFNCEVGDDVYLE---------DPTCKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 73 ~~~~~~~~~~v~~-a~~~~~~~~~~y~~---------~~~~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~ 140 (285)
.+.+.+-.|.+.. .+.+-..=...|.+ -+...+++..+++++|.+- +-+.+.+|.+-++++.+....+
T Consensus 82 ~GyY~~~~P~vI~rnile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~k 161 (450)
T COG0403 82 AGYYDTYTPPVILRNILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVTK 161 (450)
T ss_pred CcccCCcCcHHHHHHhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhhc
Confidence 4555665665555 55432221223321 1236688899999999874 4788999999888888765433
Q ss_pred --CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413 141 --DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218 (285)
Q Consensus 141 --g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g 218 (285)
.++++++...|..+.. +-..|....|.+++..+.+ |+++++++ ... .+.+|+++.|+..+
T Consensus 162 ~k~~~~~V~~~vhpqt~~-----Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~~------~~~gv~vQyP~~~G- 223 (450)
T COG0403 162 KKRNKFLVPKDVHPQTLD-----VLRTRAEGLGIEIEVVDAD-----DLDDLESA-DDG------DVFGVLVQYPNTFG- 223 (450)
T ss_pred CcCceEEecCCCCHHHHH-----HHHhhcccCceEEEEeccc-----hhhhhhhc-ccc------CeEEEEEecCCCCC-
Confidence 3568888888865532 2224446678888887764 78888888 431 78999999999652
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh----hhcccCCeEEEeccc-----ccCcceeEEeecCcccccC
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMDGARLPLA----EVCASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQK 285 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~----~~~~~~dv~~~s~sK-----~l~~p~gg~~~~~~~~i~~ 285 (285)
....+ +++|.+.+|++|.++++=.--..+. .-..++|+++.+.+- ++|||..|+.+.+++++++
T Consensus 224 ~~~~d---~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~R~ 296 (450)
T COG0403 224 IVEED---LRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFKRQ 296 (450)
T ss_pred ccchh---HHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHhhc
Confidence 36666 9999999999999888643322111 123589998665554 7888999999999888653
No 376
>KOG2040|consensus
Probab=98.94 E-value=4.6e-09 Score=96.71 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=120.0
Q ss_pred ChhHHHHHHHHHhHcCCCcE-EEcCChHHHHHH---HHHHccccCCC----eEEecCCcceeeecccccccccccccccc
Q psy5413 100 DPTCKELQEKAAKLAGKEAA-IFVPSGTMGNLI---AIMTHCDRRDS----EIIVGDCSHIMLWEQGGASQTSVYSQIGR 171 (285)
Q Consensus 100 ~~~~~~l~~~la~~~g~~~~-~~~~~Gs~a~~~---al~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~~~~~~~g 171 (285)
.+.+.+|++.+++..|.+.. +..|+|.++-.+ ++++....+|+ ..+++-..|+......+++ |
T Consensus 581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---------g 651 (1001)
T KOG2040|consen 581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---------G 651 (1001)
T ss_pred HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---------C
Confidence 35688999999999999986 777777766544 45554444453 2566788888776656666 9
Q ss_pred eeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC---
Q psy5413 172 VLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--- 248 (285)
Q Consensus 172 ~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--- 248 (285)
.+++.+....++.+|+++|+++.++ |.++.++++++.|+-. |..-+ .+++++++.++||.-|..|++--
T Consensus 652 mkvvpV~~~~~G~id~~dLk~kaek----h~~~Laa~MvTYPST~--GvfE~--~i~d~cd~iHehGGQVYlDGANMNAq 723 (1001)
T KOG2040|consen 652 MKVVPVGCDANGNIDMVDLKAKAEK----HKDNLAALMVTYPSTH--GVFEE--GIDDICDIIHEHGGQVYLDGANMNAQ 723 (1001)
T ss_pred CEEEEeeccCCCCccHHHHHHHHHH----hhhhhheeEEeccccc--ccccc--cHHHHHHHHHhcCCEEEecCCCccce
Confidence 9999999988999999999999988 5668999999998754 55433 49999999999999999999944
Q ss_pred -Chhhh-cccCCeEEEecccccCcce
Q psy5413 249 -PLAEV-CASVDTVMFCLSKGLGAPV 272 (285)
Q Consensus 249 -~~~~~-~~~~dv~~~s~sK~l~~p~ 272 (285)
++... .-+.||.-..+||.|+-|.
T Consensus 724 VGlc~pGd~GaDV~HLNLHKTFcIPH 749 (1001)
T KOG2040|consen 724 VGLCRPGDIGADVCHLNLHKTFCIPH 749 (1001)
T ss_pred ecccCCccccccceeecccceeeecC
Confidence 33222 2378999899999876543
No 377
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.92 E-value=1.8e-08 Score=86.18 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=105.1
Q ss_pred HHHHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeecccccccccccccccceeeeeeec
Q psy5413 103 CKELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTN 179 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 179 (285)
-..+-.+++-++|... ++.+++.|--+.-++.+++.. +|+.||+++...+.+....+-. -+.+.....
T Consensus 78 p~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr~~~~r~vIv~E~~~fpTdly~a~g---------~~~~~~~~~ 148 (407)
T COG3844 78 PERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALRPQEGRRVIVSEGDNFPTDLYIAEG---------LADLLGIGY 148 (407)
T ss_pred hhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhccCCCceEEeecCCCCCcchhhhcc---------hhhhhcccc
Confidence 4567778888888654 466665555555566555532 3778888765544433211111 112222223
Q ss_pred CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---hhhhcc
Q psy5413 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P---LAEVCA 255 (285)
Q Consensus 180 ~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~---~~~~~~ 255 (285)
+-...+.++++++++++ ++++|++++++..| |+..+ +.+|-+++|+||++++-|=+|+ + ..--..
T Consensus 149 ~~~~~~~P~~~~~~~~d-------d~AvV~L~~V~y~T-Gql~d---m~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~ 217 (407)
T COG3844 149 DLEGVIAPRALEEAITD-------DVAVVLLSHVNYKT-GQLLD---MRAITALAHQHGALVGWDLAHSAGAVPVDLHAA 217 (407)
T ss_pred cceeeeChHHHHHhhcc-------ceEEEEeccccccc-cceee---HHHHHHHHHhcCceEEeehhcccCCcceeeccc
Confidence 33445678899999988 89999999999999 99999 9999999999999999999998 3 222347
Q ss_pred cCCeEEEecccccCc
Q psy5413 256 SVDTVMFCLSKGLGA 270 (285)
Q Consensus 256 ~~dv~~~s~sK~l~~ 270 (285)
++|+-+.|.+|.|.+
T Consensus 218 gaDfaigcsyKYLNg 232 (407)
T COG3844 218 GADFAIGCSYKYLNG 232 (407)
T ss_pred CCCeeeeeeceeccC
Confidence 899999999999977
No 378
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=98.73 E-value=1.1e-07 Score=93.49 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhHcCCCcE--EEcCChHHHHHHHHHHccccC--CCeEEecCCcceeeecccccccccccccccceeeeee
Q psy5413 102 TCKELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRR--DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGV 177 (285)
Q Consensus 102 ~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~al~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~ 177 (285)
...++++.+++++|.+.. -+.+.+|.+.++++++....+ +++|++++..|..+.... ..+....|.+++.+
T Consensus 110 ~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~-----~t~a~~~g~~v~~~ 184 (939)
T TIGR00461 110 ALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVL-----HTRAKPFGIEVIVV 184 (939)
T ss_pred HHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHH-----HHHHHhcCcEEEEE
Confidence 367899999999999854 788888888887776643222 367899998886543211 11224557777766
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh----h
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE----V 253 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~----~ 253 (285)
|+++|++.+ +++++++.+|+.. |.+.+ +++|++++|++|.+++++.-...+.. -
T Consensus 185 --------~~~~l~~~~---------~~~~v~~q~Pn~~--G~ied---~~~i~~~~h~~gal~~~~ad~~al~ll~~Pg 242 (939)
T TIGR00461 185 --------DCSDIKKAV---------DVFGCLLQYPATD--GSILD---YKQLIDALHSHKSLVSVAADLMALTLLTPPG 242 (939)
T ss_pred --------cHHHHhhcC---------CEEEEEEECCCCC--eEEec---HHHHHHHHHHcCCEEEEEechHHhCCcCCHH
Confidence 344555554 3689999998876 89988 99999999999999999655442222 2
Q ss_pred cccCCeEEEeccc-----ccCcceeEEeecCccccc
Q psy5413 254 CASVDTVMFCLSK-----GLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 254 ~~~~dv~~~s~sK-----~l~~p~gg~~~~~~~~i~ 284 (285)
..++|+++.+..+ ++|||.+|+++.++++++
T Consensus 243 e~GaDi~vg~~q~fg~p~g~GGP~aG~~a~~~~l~r 278 (939)
T TIGR00461 243 HYGADIVLGSSQRFGVPMGYGGPHAAFFAVKDEYNR 278 (939)
T ss_pred HcCCcEEeeCCCccCCCCCCCCCceeeeeecHhhHh
Confidence 2489998554333 455699999998887764
No 379
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=98.66 E-value=6.9e-07 Score=78.29 Aligned_cols=169 Identities=20% Similarity=0.167 Sum_probs=115.5
Q ss_pred CCCccCChhHHHHHHHHHhH-cCCCc---------EEEcCChHHHHHHHHHHcccc-CCCeEEecCCcceeeeccccccc
Q psy5413 94 DDVYLEDPTCKELQEKAAKL-AGKEA---------AIFVPSGTMGNLIAIMTHCDR-RDSEIIVGDCSHIMLWEQGGASQ 162 (285)
Q Consensus 94 ~~~y~~~~~~~~l~~~la~~-~g~~~---------~~~~~~Gs~a~~~al~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~ 162 (285)
...|-+-.+..++.+.++++ +|.+. .+.+.|||.|+-.+...+... +...|.++++++..... +-
T Consensus 62 ~k~Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~---If- 137 (396)
T COG1448 62 TKNYLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKA---IF- 137 (396)
T ss_pred ccccCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHH---HH-
Confidence 34565666677888888887 56441 278999999999998876532 33458899887533211 11
Q ss_pred ccccccccceeeeeeecC--CCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 163 TSVYSQIGRVLMRGVTNQ--KDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 163 ~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
...|.++...|.- +...+|++.+.+.+++.. .+. +|++.. .+||| |.-.+.+.-++|.++.++.|.
T Consensus 138 -----~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~----~~~-vvLLH~CcHNPT-G~D~t~~qW~~l~~~~~~r~l 206 (396)
T COG1448 138 -----EAAGLEVETYPYYDAETKGLDFDGMLADLKTAP----EGS-VVLLHGCCHNPT-GIDPTEEQWQELADLIKERGL 206 (396)
T ss_pred -----HhcCCceeeeeccccccccccHHHHHHHHHhCC----CCC-EEEEecCCCCCC-CCCCCHHHHHHHHHHHHHcCC
Confidence 2347777766642 233489998888887631 133 444444 99999 899999999999999999999
Q ss_pred eEEEeCccCChh-----------hhc-ccCC-eEEEecccccCc---ceeEEee
Q psy5413 240 PVHMDGARLPLA-----------EVC-ASVD-TVMFCLSKGLGA---PVGSILA 277 (285)
Q Consensus 240 ~li~Dea~~~~~-----------~~~-~~~d-v~~~s~sK~l~~---p~gg~~~ 277 (285)
+.++|-||-++. .+. .+.. +++.|+||.|+. ..|++.+
T Consensus 207 ip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERVGa~~v 260 (396)
T COG1448 207 IPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred eeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhccceeEE
Confidence 999999966221 111 2222 449999999887 6666544
No 380
>PLN02452 phosphoserine transaminase
Probab=98.65 E-value=1.7e-07 Score=84.20 Aligned_cols=182 Identities=8% Similarity=-0.015 Sum_probs=107.8
Q ss_pred cCCCcHHHHHHHHhccc------------CCCCccCChhHHHHHHHHHhHcCCCc---E-EEcCChHHHHHHHHHHcccc
Q psy5413 76 ISKPTMEMKNYMFNCEV------------GDDVYLEDPTCKELQEKAAKLAGKEA---A-IFVPSGTMGNLIAIMTHCDR 139 (285)
Q Consensus 76 ~~~~~~~v~~a~~~~~~------------~~~~y~~~~~~~~l~~~la~~~g~~~---~-~~~~~Gs~a~~~al~~~~~~ 139 (285)
|...+++|++++++... .|..-.....+.++++.|.++++.+. + ++..|||.++++++..++ .
T Consensus 15 P~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl~-~ 93 (365)
T PLN02452 15 PATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNLC-K 93 (365)
T ss_pred CCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhcC-C
Confidence 34568899999887642 12211123558889999999998642 4 566889999999999988 4
Q ss_pred CCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC---CCCCHHHHHHHhcccccccCCceEEEEEecccCC
Q psy5413 140 RDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD---GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216 (285)
Q Consensus 140 ~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~ 216 (285)
+|+++++...... ...+...+ +.+|...+.....+. ..+++++++ ..+ +.+.|.+++-.-.
T Consensus 94 ~~~~~l~~~~G~f-g~r~~~~a------~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~v~~~hnETs 157 (365)
T PLN02452 94 PGDKADFVVTGSW-SKKAAKEA------KKYCKTNVIASGKDEKYTKIPSVSEWE--LTP-------DAKFVHICANETI 157 (365)
T ss_pred CCCeEEEEECCHH-HHHHHHHH------HHhCCCcEEEecCCCCCCCCCChHHcC--CCC-------CCcEEEECCCCCC
Confidence 7776655433221 11222222 333433222211111 135666642 112 4566766663334
Q ss_pred CCeee-CCHHHHHHHHHHHHHcCCeEEEeCccC-Chhhh-cccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 217 CGGTV-LPMQWLRELKARCQEHNIPVHMDGARL-PLAEV-CASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 217 ~gG~~-~~~~~l~~i~~la~~~gi~li~Dea~~-~~~~~-~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
+ |.. .+ ++++. ++++++|.+++ +...+ .+..++...|.+|++|.|-.++++.++++++
T Consensus 158 t-Gv~~~~---~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~ 218 (365)
T PLN02452 158 H-GVEFKD---YPDVG------NVPLVADMSSNFLSKPVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIG 218 (365)
T ss_pred C-cEecCc---ccccC------CCeEEEECCccccCcccCHHHcCEEEEecccccCCCCeEEEEEcHHHHh
Confidence 4 775 66 66654 28999999987 22221 2345556679999997554567777777664
No 381
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=98.57 E-value=2.2e-07 Score=81.62 Aligned_cols=172 Identities=18% Similarity=0.112 Sum_probs=96.1
Q ss_pred CCCc-cCChhHHHHHHHHHhHcCCCcE--EEcCChHHHHHH-HH-HHcccc-CC----------CeEEecCCcceeeecc
Q psy5413 94 DDVY-LEDPTCKELQEKAAKLAGKEAA--IFVPSGTMGNLI-AI-MTHCDR-RD----------SEIIVGDCSHIMLWEQ 157 (285)
Q Consensus 94 ~~~y-~~~~~~~~l~~~la~~~g~~~~--~~~~~Gs~a~~~-al-~~~~~~-~g----------~~vi~~~~~h~~~~~~ 157 (285)
...| +.-.+..|+++.+++++|.+.. +...|.|--++. ++ .+++.. .| -+.+|+-+.|- ..
T Consensus 61 ~RNY~G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYD---RH 137 (425)
T PF12897_consen 61 CRNYPGGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYD---RH 137 (425)
T ss_dssp TTSS-S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--H---HH
T ss_pred ccCCCCccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCch---HH
Confidence 4578 7777899999999999998653 444444422221 11 111110 11 13567654421 11
Q ss_pred cccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHH-HH
Q psy5413 158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKAR-CQ 235 (285)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~l-a~ 235 (285)
-++. +.+|.+++.+|..++| +|++.+|+.+.++ +.+|.|.+.+ =+||+ |.+|+.|-+++++.+ +.
T Consensus 138 Fai~------E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D-----~svKGiWcVP~ySNPt-G~tySde~vrrlA~m~~A 204 (425)
T PF12897_consen 138 FAIT------EHFGIEMIPVPMTEDG-PDMDMVEELVAED-----PSVKGIWCVPKYSNPT-GITYSDEVVRRLAAMKTA 204 (425)
T ss_dssp HHHH------HHCT-EEEEEEEETTE-E-HHHHHHHTHTS-----TTEEEEEE-SSS-TTT------HHHHHHHHHS--S
T ss_pred HHHH------HhhCcEEEecCCCCCC-CCHHHHHHHHhcC-----CccceEEeCCCccCCC-CccCCHHHHHHHhcCCcC
Confidence 1233 6789999999997776 7999999999652 2689999988 77888 999999999999988 34
Q ss_pred HcCCeEEEeCccC--Ch------------hhhc---ccCCe--EEEecccc-cCcceeEEeecCcc
Q psy5413 236 EHNIPVHMDGARL--PL------------AEVC---ASVDT--VMFCLSKG-LGAPVGSILAGPEE 281 (285)
Q Consensus 236 ~~gi~li~Dea~~--~~------------~~~~---~~~dv--~~~s~sK~-l~~p~gg~~~~~~~ 281 (285)
+.+..++-|.+|. .+ ...+ .+.|- ++.|.||. +.|-..++++++++
T Consensus 205 A~DFRI~WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~ 270 (425)
T PF12897_consen 205 APDFRIFWDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEA 270 (425)
T ss_dssp STT-EEEEE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HH
T ss_pred CcCeEEEeecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHH
Confidence 5799999999977 11 1112 23343 38999995 55544455655543
No 382
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.50 E-value=1.3e-06 Score=85.74 Aligned_cols=183 Identities=13% Similarity=0.081 Sum_probs=117.1
Q ss_pred cCCcCCCcHHHH-HHHHhcccCCCCcc---------CChhHHHHHHHHHhHcCCC--cEEEcCChHHHHHHHHHHccccC
Q psy5413 73 SDTISKPTMEMK-NYMFNCEVGDDVYL---------EDPTCKELQEKAAKLAGKE--AAIFVPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 73 ~~~~~~~~~~v~-~a~~~~~~~~~~y~---------~~~~~~~l~~~la~~~g~~--~~~~~~~Gs~a~~~al~~~~~~~ 140 (285)
.+.+.+-.|.+. +.+.+...=...|. .-+...+++..+++++|.+ ++-+.+.+|.+-++++.+....+
T Consensus 86 ~G~y~~~~P~vi~~~i~~~~~~yTaYTPYQpEisQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~~~ 165 (954)
T PRK12566 86 MGYHGTVTPTVILRNVLENPGWYTAYTPYQPEIAQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRVAK 165 (954)
T ss_pred ccccCCcCcHHHHHHHHhCchhhhcCCCCCchhhhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHHhh
Confidence 455555566554 55544221112222 1133678999999999998 44788888887776665543112
Q ss_pred --CCeEEecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCC
Q psy5413 141 --DSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218 (285)
Q Consensus 141 --g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g 218 (285)
.+++++++..|..+.. +-..|....|.+++. +++++.+.+ ++.+|++.+|+..
T Consensus 166 ~k~~~~~v~~~~hP~~~~-----v~~t~~~~~g~~i~~-----------~~~~~~~~~-------~~~~v~vq~P~~~-- 220 (954)
T PRK12566 166 SKSNRFFVDEHCHPQTLS-----VLRTRAEGFGFELVV-----------DAVDNLAAH-------AVFGALLQYPDTH-- 220 (954)
T ss_pred cCCCEEEECCCCCHHHHH-----HHHHhhhcCCcEEEE-----------cchhhcCCC-------CEEEEEEECCCCc--
Confidence 3468888888855422 111222445666653 334445544 7899999999876
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEeCccC-Chh----hhcccCCeEEE-----ecccccCcceeEEeecCccccc
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMDGARL-PLA----EVCASVDTVMF-----CLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~Dea~~-~~~----~~~~~~dv~~~-----s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
|.+.+ +++|.+++|++|.+++ +.+-. .+. .-..++|+++. +..=++|||..|+++.++++++
T Consensus 221 G~i~d---~~~i~~~~h~~gal~~-~~~d~laL~ll~~Pge~GADI~vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R 292 (954)
T PRK12566 221 GEIRD---LRPLIDQLHGQQALAC-VAADLLSLLVLTPPGELGADVVLGSTQRFGVPMGYGGPHAAYFACRDDYKR 292 (954)
T ss_pred eEEcc---HHHHHHHHHHcCCEEE-EEeCHHHHhCCCChhhcCCcEEeeCCCcCCCCCCCCCCCeeeeeehHHHHh
Confidence 89987 9999999999999866 44422 111 12358999854 3334677799999999887765
No 383
>KOG1383|consensus
Probab=98.43 E-value=1.1e-06 Score=78.54 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=114.5
Q ss_pred HHHHHHHHHhHcCCCc---EEEcCChHHHHHHHHHHccccC----C---CeEEecCCcceeeecccccccccccccccce
Q psy5413 103 CKELQEKAAKLAGKEA---AIFVPSGTMGNLIAIMTHCDRR----D---SEIIVGDCSHIMLWEQGGASQTSVYSQIGRV 172 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~al~~~~~~~----g---~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~ 172 (285)
-.++-..++.+++... ...+.+||++++.+.+...... | .+++++...|..... .+ ..+++
T Consensus 122 e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK---~a------~yf~v 192 (491)
T KOG1383|consen 122 EAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEK---AA------RYFEV 192 (491)
T ss_pred HHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHH---HH------hhEEE
Confidence 3344455566665443 2678889999888887754321 1 235555555654443 22 56699
Q ss_pred eeeeeecC-CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH-cCCeEEEeCccCCh
Q psy5413 173 LMRGVTNQ-KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE-HNIPVHMDGARLPL 250 (285)
Q Consensus 173 ~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~-~gi~li~Dea~~~~ 250 (285)
++..+|.+ .++.+|+..+.+.+++ +|.+++.+-++-|+ |.+-+ +++|.++..+ +++++++|.+-+++
T Consensus 193 ~l~~V~~~~~~~~~D~~k~~~~i~e-------Nti~lv~~~~~~p~-G~~e~---ve~l~~l~~e~w~ipiHvDa~~GgF 261 (491)
T KOG1383|consen 193 ELREVPLDEGDYRVDPGKVVRMIDE-------NTIMLVGSLPNFPT-GEIED---VEKLADLLLEIWDIPIHVDACLGGF 261 (491)
T ss_pred EEEeeeccccceEecHHHHHHHhcc-------ceEEEEEEcCCCCc-cchhh---HHHHHHHHHHHhCCceeecccCccc
Confidence 99999987 5678999999999999 89999999999999 89988 9999999999 99999999997633
Q ss_pred hh----h--------cccCCeEEEecccccCc--ceeEEeecCccccc
Q psy5413 251 AE----V--------CASVDTVMFCLSKGLGA--PVGSILAGPEEFIQ 284 (285)
Q Consensus 251 ~~----~--------~~~~dv~~~s~sK~l~~--p~gg~~~~~~~~i~ 284 (285)
.. . ..++-.+..+.||.-.. -.+.++-.+++++.
T Consensus 262 i~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~ 309 (491)
T KOG1383|consen 262 INPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLP 309 (491)
T ss_pred cccccccCccccccCCCCceeEeeccceeeeeecCcEEEEEccccccc
Confidence 22 1 12333458888995322 35566667776553
No 384
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=98.40 E-value=2.9e-06 Score=75.84 Aligned_cols=181 Identities=9% Similarity=-0.004 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHHhcccC------------CCCccCChhHHHHHHHHHhHcCCCc---E-EEcCChHHHHHHHHHHccccC
Q psy5413 77 SKPTMEMKNYMFNCEVG------------DDVYLEDPTCKELQEKAAKLAGKEA---A-IFVPSGTMGNLIAIMTHCDRR 140 (285)
Q Consensus 77 ~~~~~~v~~a~~~~~~~------------~~~y~~~~~~~~l~~~la~~~g~~~---~-~~~~~Gs~a~~~al~~~~~~~ 140 (285)
..-+++|++++++.+.+ |..-.....+.++++.+.++++.+. + ++..|||.+.+++...++ .+
T Consensus 13 a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nll-~~ 91 (364)
T PRK12462 13 GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNFS-RP 91 (364)
T ss_pred cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHcC-CC
Confidence 33577888888755543 1111122457788899999998632 4 566668999999999988 47
Q ss_pred CCeEE--ecCCcceeeecccccccccccccccc-eeeeeee--cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccC
Q psy5413 141 DSEII--VGDCSHIMLWEQGGASQTSVYSQIGR-VLMRGVT--NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN 215 (285)
Q Consensus 141 g~~vi--~~~~~h~~~~~~~~~~~~~~~~~~~g-~~~~~~~--~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n 215 (285)
|++++ +....++ ..+...+ +.+| +.+.... ..+...++++++ .+.+ +.+.|.+++..-
T Consensus 92 g~~~~~~~~tG~fg--~r~~~ea------~~~g~v~~~~~~~~~~~~~~p~~~~~--~~~~-------d~~~v~~t~NET 154 (364)
T PRK12462 92 GAAAPEYVTTGYWS--RKAIGEA------SRVAAMRVVWDGAASGYRTLPSLAEL--DWDA-------RAPFRHYVSNET 154 (364)
T ss_pred CCcEEEEEeCCHHH--HHHHHHH------HhcCCceEecCcCCCCCCcCCCHHHh--ccCC-------CCcEEEEccCCC
Confidence 77543 3333221 1111122 2233 2222211 111233555554 1222 455666655333
Q ss_pred CCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 216 ~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
.+ |..++ ++.+.+++++|+|.+-. +...-.+..|++..+..|+||.|-.++++-+++.++
T Consensus 155 st-Gv~~~--------~~~~~~~~llvvD~sS~~~s~pid~~~~dvi~agsQKnlgP~Gltvvivs~~al~ 216 (364)
T PRK12462 155 VE-GLQFP--------DAAGLPDSPLIADMSSDFMSRPFDVEAYGMVYAHAQKNLGPAGVTVAIIRRALLE 216 (364)
T ss_pred Cc-eEecC--------cccccCCCeEEEEcCchhhCCCCChHHccEEEeeccccCCCCceEEEEECHHHHh
Confidence 33 88886 22334699999999966 221122345999999999999554466666776664
No 385
>KOG1405|consensus
Probab=98.37 E-value=6.6e-07 Score=77.44 Aligned_cols=84 Identities=14% Similarity=0.109 Sum_probs=63.1
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-----hhcccCCe
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-----EVCASVDT 259 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-----~~~~~~dv 259 (285)
-+++++|+.|.+..+. ...+++|++|+.++.+|-.-.+++++++|+++|++||+.+|+||+|++.. -+.++.++
T Consensus 253 ~Cl~~Ve~li~~~~~k-~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l 331 (484)
T KOG1405|consen 253 GCLAEVEDLIVKYRKK-KKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNL 331 (484)
T ss_pred hHHHHHHHHHHHHhhc-CCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCC
Confidence 4678889988774321 23789999999999997777899999999999999999999999998321 12233322
Q ss_pred E----EEecccccC
Q psy5413 260 V----MFCLSKGLG 269 (285)
Q Consensus 260 ~----~~s~sK~l~ 269 (285)
- +++|||=|-
T Consensus 332 ~~PpD~vTFSKK~q 345 (484)
T KOG1405|consen 332 DSPPDVVTFSKKFQ 345 (484)
T ss_pred CCCccceehhhhhh
Confidence 1 667778654
No 386
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=98.18 E-value=3.5e-06 Score=74.83 Aligned_cols=157 Identities=21% Similarity=0.246 Sum_probs=91.7
Q ss_pred HHHHHHhHcCCC---cEEEcCChH-HHHHHHHHHcc-ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecC
Q psy5413 106 LQEKAAKLAGKE---AAIFVPSGT-MGNLIAIMTHC-DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180 (285)
Q Consensus 106 l~~~la~~~g~~---~~~~~~~Gs-~a~~~al~~~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 180 (285)
|...+.+..|.. .++.++-++ +++...+.++. +..++.|+.+...|.+...+...+ |.+++.++..
T Consensus 61 l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~A---------Gl~~~vV~~~ 131 (389)
T PF05889_consen 61 LVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERA---------GLEPVVVENV 131 (389)
T ss_dssp HHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHT---------T-EEEEE-EE
T ss_pred HHHHHHHHcCCccccceEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhc---------CCeEEEeecc
Confidence 334444455654 345555443 23333333332 224567887777776665543333 7676666632
Q ss_pred --CC-CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC--------
Q psy5413 181 --KD-GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-------- 249 (285)
Q Consensus 181 --~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-------- 249 (285)
++ -..|++++++++++. +.+..+.++++++... +...| ++++|+++|++|||+.++-.||+-
T Consensus 132 ~~~d~l~td~~~ie~~i~~~----G~~~iLcvltttscfa-pr~~D--~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~ 204 (389)
T PF05889_consen 132 LEGDELITDLEAIEAKIEEL----GADNILCVLTTTSCFA-PRLPD--DIEEIAKICKEYDIPHLVNNAYGVQSSKCMHL 204 (389)
T ss_dssp EETTEEEEHHHHHHHHHHHH----CGGGEEEEEEESSTTT-TB------HHHHHHHHHHHT--EEEEGTTTTT-HHHHHH
T ss_pred CCCCeeeccHHHHHHHHHHh----CCCCeEEEEEecCccC-CCCCc--cHHHHHHHHHHcCCceEEccchhhhHHHHHHH
Confidence 22 246889999999763 2244455555555444 45444 499999999999999999999982
Q ss_pred hhhh--cccCCeEEEecccccCcceeEEeec
Q psy5413 250 LAEV--CASVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 250 ~~~~--~~~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
+... ....|++.-+..|.|-.|.||.++.
T Consensus 205 i~~a~~~GRvda~vqS~dkNF~VPvGgai~A 235 (389)
T PF05889_consen 205 IQQAWRVGRVDAFVQSTDKNFMVPVGGAIMA 235 (389)
T ss_dssp HHHHHHHSTCSEEEEEHHHHHCEESSHEEEE
T ss_pred HHHHHhcCCcceeeeecCCCEEecCCCcEEE
Confidence 1111 2578999999999998888876653
No 387
>KOG1411|consensus
Probab=97.79 E-value=0.0007 Score=58.90 Aligned_cols=181 Identities=18% Similarity=0.120 Sum_probs=112.7
Q ss_pred cHHHHHHHHhccc--CCCCccCChhHHHHHHHHHhHc-CCC-------cE--EEcCChHHHHHHHHHHcc-ccCCCeEEe
Q psy5413 80 TMEMKNYMFNCEV--GDDVYLEDPTCKELQEKAAKLA-GKE-------AA--IFVPSGTMGNLIAIMTHC-DRRDSEIIV 146 (285)
Q Consensus 80 ~~~v~~a~~~~~~--~~~~y~~~~~~~~l~~~la~~~-g~~-------~~--~~~~~Gs~a~~~al~~~~-~~~g~~vi~ 146 (285)
-|.|++|-++... .+-.|.+-.+..|+.+.-+++. |.. +. +.+-||+.|+-.+...+. ..++..|++
T Consensus 72 L~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~i 151 (427)
T KOG1411|consen 72 LPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYI 151 (427)
T ss_pred eHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcchhhHHHHHHHhhccccceee
Confidence 4566666443332 1346666666788888888873 432 22 455678877766554432 235677999
Q ss_pred cCCcceeeecccccccccccccccceeeeee--ecCCCCCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCC
Q psy5413 147 GDCSHIMLWEQGGASQTSVYSQIGRVLMRGV--TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLP 223 (285)
Q Consensus 147 ~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~ 223 (285)
++++.+.....- ...|..+..+ ..+....+|.+.+.+-+.+.. .. ..|++-. -+||| |.=..
T Consensus 152 p~PTWgNh~~if---------~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p----~g-s~ilLhaCaHNPT-GvDPt 216 (427)
T KOG1411|consen 152 PDPTWGNHKNIF---------KDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAP----EG-SIILLHACAHNPT-GVDPT 216 (427)
T ss_pred cCCcccccCccc---------cccCcceeeeeeccccccccchHHHHHHHhcCC----CC-cEEEeehhhcCCC-CCCcc
Confidence 988754432211 1224443333 233445578777776665521 12 2333333 89999 88888
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccCChh-------------hhcccCCeE-EEecccccCc---ceeEE
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARLPLA-------------EVCASVDTV-MFCLSKGLGA---PVGSI 275 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~~~~-------------~~~~~~dv~-~~s~sK~l~~---p~gg~ 275 (285)
.|..++|.++.++.+.+-++|-+|-++. ++..+.+++ +-|+.|.+|. ..|++
T Consensus 217 ~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~ 285 (427)
T KOG1411|consen 217 KEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGAL 285 (427)
T ss_pred HHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhcccee
Confidence 8999999999999999999999966221 222455665 8999999887 45544
No 388
>KOG1412|consensus
Probab=97.28 E-value=0.0034 Score=54.09 Aligned_cols=135 Identities=14% Similarity=0.098 Sum_probs=86.6
Q ss_pred EEcCChHHHHHHHHHHccc-cCCCeEEecCCcceeeecccccccccccccccc-eeeeeeec--CCCCCCCHHHHHHHhc
Q psy5413 120 IFVPSGTMGNLIAIMTHCD-RRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR-VLMRGVTN--QKDGTFDLDEMEAKFS 195 (285)
Q Consensus 120 ~~~~~Gs~a~~~al~~~~~-~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~~~~~~d~~~l~~~i~ 195 (285)
+.+-||+.|+.++...+.. ...+.|++++++...... +. ...| ..+...+. .+....|++.+...|+
T Consensus 103 vQslsGTGAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~---if------~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~ 173 (410)
T KOG1412|consen 103 VQSLSGTGALRIAADFLATFYNKNTVYVSNPTWENHHA---IF------EKAGFTTVATYPYWDAENKCVDLEGFLSDLE 173 (410)
T ss_pred eeeccccchhhhhHHHHHHhcccceeEecCCchhHHHH---HH------HHcCCceeeeeeeecCCCceecHHHHHHHHh
Confidence 6788999999888776532 234558888776322111 11 1123 12223332 2334579998888887
Q ss_pred ccccccCCceE-EEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChh-------------hhcccCCeE
Q psy5413 196 TADNIHCASTS-LVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLA-------------EVCASVDTV 260 (285)
Q Consensus 196 ~~~~~~~~~~~-~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~-------------~~~~~~dv~ 260 (285)
.. ... .+++.. -+||| |.=...|...+|+++.++.+.+.++|-+|-++. +...+..++
T Consensus 174 ~A------Pe~si~iLhaCAhNPT-GmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~f 246 (410)
T KOG1412|consen 174 SA------PEGSIIILHACAHNPT-GMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELF 246 (410)
T ss_pred hC------CCCcEEeeeccccCCC-CCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEE
Confidence 62 223 333333 69999 777778889999999999999999999965221 111344444
Q ss_pred -EEecccccCc
Q psy5413 261 -MFCLSKGLGA 270 (285)
Q Consensus 261 -~~s~sK~l~~ 270 (285)
+-||+|.+|.
T Consensus 247 v~QSFaKNfGl 257 (410)
T KOG1412|consen 247 VCQSFAKNFGL 257 (410)
T ss_pred EEhhhhhhccc
Confidence 8999999887
No 389
>KOG3846|consensus
Probab=97.01 E-value=0.005 Score=53.01 Aligned_cols=205 Identities=15% Similarity=0.156 Sum_probs=120.7
Q ss_pred ccccccccCCeeeeeccCCcCCCcHHHHHHHHhcc-------c-CCCCcc--CCh-hHHHHHHHHHhHcCCCc--EEEcC
Q psy5413 57 VPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCE-------V-GDDVYL--EDP-TCKELQEKAAKLAGKEA--AIFVP 123 (285)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~-------~-~~~~y~--~~~-~~~~l~~~la~~~g~~~--~~~~~ 123 (285)
..+.+...+..++.|-.++.+..+....+.+.+.+ . +|. -+ ++. .-...-..++.+.|... +.++|
T Consensus 57 ~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~av~gH~-~GkvPW~~~De~il~l~~~iVGA~e~EvavmN 135 (465)
T KOG3846|consen 57 ADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKCAVEGHF-KGKVPWVSIDEPILPLLAPIVGAQENEVAVMN 135 (465)
T ss_pred CCccccCCCCCeEEEeccccccCchhhHhHHHHHHHHHHhhhhhccc-ccccceeecchhhhhhhhhhccCCchhhhhHh
Confidence 33444555667777776666654444444333222 1 111 11 111 12234455666677643 34555
Q ss_pred ChHHHHHHHHHHccccCCC---eEEecCCc----ceeeecccccccccccccccce----eeeeeec-CCCCCCCHHHHH
Q psy5413 124 SGTMGNLIAIMTHCDRRDS---EIIVGDCS----HIMLWEQGGASQTSVYSQIGRV----LMRGVTN-QKDGTFDLDEME 191 (285)
Q Consensus 124 ~Gs~a~~~al~~~~~~~g~---~vi~~~~~----h~~~~~~~~~~~~~~~~~~~g~----~~~~~~~-~~~~~~d~~~l~ 191 (285)
+=+.-+...+..+. +|.. +|+....+ |+....-. +..|. .++-+.. ..+..+..|++.
T Consensus 136 sLTvNlh~Ll~sFy-KPTekR~KILlE~kaFPSDhYAiesQ~---------~lhG~~~e~sm~~iePREGEetlRteDIL 205 (465)
T KOG3846|consen 136 SLTVNLHSLLISFY-KPTEKRFKILLEKKAFPSDHYAIESQC---------KLHGISPENSMIQIEPREGEETLRTEDIL 205 (465)
T ss_pred hhhhHHHHHHHHhc-CCcchhhhhhhccCCCCchHHHHHhhh---------hhcCCChHHheEEecccccccchhHHHHH
Confidence 55544445555555 5543 25543222 22211111 11122 2223322 223457889999
Q ss_pred HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC----ChhhhcccCCeEEEecccc
Q psy5413 192 AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL----PLAEVCASVDTVMFCLSKG 267 (285)
Q Consensus 192 ~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~----~~~~~~~~~dv~~~s~sK~ 267 (285)
+.|++ .++.+++|.++.++..| |+.++ +.+|-..-+..|+++=.|-+|+ ++.--.+++|+-|.|..|.
T Consensus 206 d~IEk----ngDeiA~v~fSGvqyYT-GQ~Fd---i~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKY 277 (465)
T KOG3846|consen 206 DTIEK----NGDEIALVCFSGVQYYT-GQYFD---IGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKY 277 (465)
T ss_pred HHHHh----cCCeEEEEEeecceeec-ccccc---hhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecc
Confidence 99988 46689999999999999 99999 9999987777899999999988 3333458999999999998
Q ss_pred cCc---ceeEEeecCc
Q psy5413 268 LGA---PVGSILAGPE 280 (285)
Q Consensus 268 l~~---p~gg~~~~~~ 280 (285)
+.. .+||..+-.+
T Consensus 278 lnaGaGgIgGlFvHek 293 (465)
T KOG3846|consen 278 LNAGAGGIGGLFVHEK 293 (465)
T ss_pred cccCCCccceeeeehh
Confidence 755 4566555433
No 390
>KOG3843|consensus
Probab=96.90 E-value=0.00065 Score=57.10 Aligned_cols=88 Identities=23% Similarity=0.351 Sum_probs=62.4
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCC-----h-----hhh
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLP-----L-----AEV 253 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~-----~-----~~~ 253 (285)
..|++.+++.|++. ...+|+.-+.+..+ -..-.++.+++|+.+|-.|+++-|+..+|+- + ..-
T Consensus 140 ~tdleav~~~iee~------g~dcilci~sttsc-fapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~~ 212 (432)
T KOG3843|consen 140 ITDLEAVEAIIEEL------GEDCILCIHSTTSC-FAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAAE 212 (432)
T ss_pred HHhHHHHHHHHHHh------CCceEEEEeecccc-cCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHhh
Confidence 46999999999874 22333333323222 3444567899999999999999999999881 1 111
Q ss_pred cccCCeEEEecccccCcceeEEeec
Q psy5413 254 CASVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 254 ~~~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
+...|.++-|+.|.|..|.||.++.
T Consensus 213 ~grida~vqsldknf~vpvggaiia 237 (432)
T KOG3843|consen 213 CGRIDAFVQSLDKNFMVPVGGAIIA 237 (432)
T ss_pred hccHHHHHHHhhhcceeecchhHhh
Confidence 3466888899999999999987753
No 391
>KOG2040|consensus
Probab=96.41 E-value=0.027 Score=53.26 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=95.5
Q ss_pred HHHHHHHhHcCCCc--EEEcCChHHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCC
Q psy5413 105 ELQEKAAKLAGKEA--AIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD 182 (285)
Q Consensus 105 ~l~~~la~~~g~~~--~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 182 (285)
..+..++++.|.+- +-+.+-|+.|-++...+....++++.+++...|..+..... ..+..+|.+++..
T Consensus 167 NyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~~krkk~vvd~~~hpqtlsV~~-----TRa~~~~i~v~~~----- 236 (1001)
T KOG2040|consen 167 NYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRINKRKKFVVDSNCHPQTLSVVK-----TRAKGFGIKVVVS----- 236 (1001)
T ss_pred hhHHhhhhccCCcccchhhhccchhHHHHHHHHHhhcccceEEecCCCCcchhhhhh-----ccccccceeEEec-----
Confidence 34566688888764 46778899888888877665556678888888866532111 1113344443222
Q ss_pred CCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCCh----hhhcccCC
Q psy5413 183 GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPL----AEVCASVD 258 (285)
Q Consensus 183 ~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~----~~~~~~~d 258 (285)
|+++.... .+++..|++..|... |.+.+ ..++++.+++.|..+++----..+ .....++|
T Consensus 237 ---~~~~~~~s--------~~~v~gvlvQYP~t~--G~i~d---~~el~~~a~~~~s~vv~atDLLaLtiLrpPgefGaD 300 (1001)
T KOG2040|consen 237 ---DIKEADYS--------SKDVSGVLVQYPDTE--GSVLD---FDELVELAHANGSLVVMATDLLALTILRPPGEFGAD 300 (1001)
T ss_pred ---CHHHhhcc--------ccceeEEEEEcCCCC--CcccC---HHHHHHHhhccCceEEEeehhhHHHccCChhhcCce
Confidence 33222211 126889999998876 89999 888899999999887653221111 11224889
Q ss_pred eEEEeccc-----ccCcceeEEeecCcccc
Q psy5413 259 TVMFCLSK-----GLGAPVGSILAGPEEFI 283 (285)
Q Consensus 259 v~~~s~sK-----~l~~p~gg~~~~~~~~i 283 (285)
+.+.|... ++|||.+||.+..+++.
T Consensus 301 IavGSsQRFGVPlGYGGPHAaFfAv~~~l~ 330 (1001)
T KOG2040|consen 301 IAVGSSQRFGVPLGYGGPHAAFFAVSESLV 330 (1001)
T ss_pred eeeccccccCccccCCCchHHHHHHHHHHH
Confidence 88766544 45667777776655543
No 392
>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.
Probab=96.15 E-value=0.0041 Score=54.45 Aligned_cols=150 Identities=18% Similarity=0.095 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhHc---CC-----CcEEEcCChHHHHHHHHHHcccc---CCC--eEEecCCcceeeecccccccccccc
Q psy5413 101 PTCKELQEKAAKLA---GK-----EAAIFVPSGTMGNLIAIMTHCDR---RDS--EIIVGDCSHIMLWEQGGASQTSVYS 167 (285)
Q Consensus 101 ~~~~~l~~~la~~~---g~-----~~~~~~~~Gs~a~~~al~~~~~~---~g~--~vi~~~~~h~~~~~~~~~~~~~~~~ 167 (285)
-...+|++.|.++. |. ...+|-++.++-+.+|+-++... .+. .|+...+|+....... .++
T Consensus 43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt-----~~f- 116 (363)
T PF04864_consen 43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQT-----DFF- 116 (363)
T ss_dssp TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHC-----CCT-
T ss_pred eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHH-----Hhc-
Confidence 34677888887774 32 22466666677777777776532 111 3776777765443211 111
Q ss_pred cccceeeeeeec-CCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 168 QIGRVLMRGVTN-QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 168 ~~~g~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
........- ...+. +. .....-.=+++.||||. |.+-. . +.+..+..+|.|-|
T Consensus 117 ---~s~~y~w~Gda~~~~----------~~----~~~~~~IElVTSPNNPD-G~lr~-----~---V~~g~~~k~I~D~A 170 (363)
T PF04864_consen 117 ---DSRLYKWAGDASNFK----------NS----DNPSPYIELVTSPNNPD-GQLRE-----A---VLNGSSGKVIHDLA 170 (363)
T ss_dssp ----BTTEEEEEECCCGT----------T-----S-CCGEEEEEESS-TTT---------------SSTTTEEEEEEE-T
T ss_pred ---cccCccccccHHhhc----------cC----CCCCCeEEEEeCCCCCc-ccccc-----h---hcCCCCcceeeeee
Confidence 111111111 11110 11 01134455688899999 55422 1 23556677899999
Q ss_pred cC----ChhhhcccCCeEEEeccccc--Cc-ceeEEeecCccc
Q psy5413 247 RL----PLAEVCASVDTVMFCLSKGL--GA-PVGSILAGPEEF 282 (285)
Q Consensus 247 ~~----~~~~~~~~~dv~~~s~sK~l--~~-p~gg~~~~~~~~ 282 (285)
|. ........-|+.++|+||.- +| .+|..++.++++
T Consensus 171 YYWPhyTpI~~~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~V 213 (363)
T PF04864_consen 171 YYWPHYTPITAPADHDIMLFTLSKLTGHAGSRFGWALVKDEEV 213 (363)
T ss_dssp T-STTTS---S-B--SEEEEEHHHHCS-GGG-EEEEEES-HHH
T ss_pred eecccccccCCCCCCceEEEEEecccCccccccceeeecCHHH
Confidence 66 22223356689999999953 34 677777777654
No 393
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=95.88 E-value=0.02 Score=44.97 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHHHhHc----C--C----CcEEEcCChHHHHHHHHHHccccCCCeEEecCCcc
Q psy5413 97 YLEDPTCKELQEKAAKLA----G--K----EAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSH 151 (285)
Q Consensus 97 y~~~~~~~~l~~~la~~~----g--~----~~~~~~~~Gs~a~~~al~~~~~~~g~~vi~~~~~h 151 (285)
|.......+|++.+++++ | . +.+++++++++|++.++.+++ .+||.|+++.++|
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~-dpGD~VlVp~P~Y 151 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA-DPGDAFLVPTPYY 151 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc-CCCCEEEEeCCCC
Confidence 554455777888888775 4 1 245888899999999999988 5999999998876
No 394
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=93.92 E-value=0.87 Score=40.46 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhHcCCCc---EEEcCCh-HHHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccc--eee
Q psy5413 101 PTCKELQEKAAKLAGKEA---AIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGR--VLM 174 (285)
Q Consensus 101 ~~~~~l~~~la~~~g~~~---~~~~~~G-s~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g--~~~ 174 (285)
....+.++.+.++++.+. ++|+.+| +.....+...++.+.+.. ++...++.... ..-+ ...+ ..+
T Consensus 50 ~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nLl~~~~~~-yv~~g~Ws~~a--~~eA------~~~~~~~~~ 120 (365)
T COG1932 50 NVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNLLGKRGTD-YVDTGAWSEFA--IKEA------KKVGKQPKL 120 (365)
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhhhcccCce-eEeeeehhHhH--HHHH------HHhcccccc
Confidence 347788899999998764 4566554 666777777766433321 22222111100 0000 1111 111
Q ss_pred eeee---cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--C
Q psy5413 175 RGVT---NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--P 249 (285)
Q Consensus 175 ~~~~---~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~ 249 (285)
.... ......++++..+ +.+ +.+.|.++ +|+++.|.-++. ...+.. +.++++|..-. +
T Consensus 121 ~~~~~~~~~~~~iP~~~~~~--~~~-------~~ayv~~~-~NeTi~Gv~v~~--~p~~~~-----~~~~v~D~SS~ils 183 (365)
T COG1932 121 IDARIEEAGYGSIPDLSKWD--FSD-------NDAYVHFC-WNETISGVEVPE--LPDIGS-----DGLLVADASSAILS 183 (365)
T ss_pred cccceeccCccCCCChhhcc--cCC-------CccEEEEe-cCCcccceEccC--CCCCCC-----CceEEEecccHHhc
Confidence 1111 1111224444433 332 33334443 333333777661 222221 27899998855 3
Q ss_pred hhhhcccCCeEEEecccccCcceeEEeecCccccc
Q psy5413 250 LAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284 (285)
Q Consensus 250 ~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~~~~i~ 284 (285)
..--...+|++.++..|.+|+---++++-++++++
T Consensus 184 r~iDvsk~dviyagaQKnlGpaGltvvIvr~~~l~ 218 (365)
T COG1932 184 RPIDVSKYDVIYAGAQKNLGPAGLTVVIVRPDLLE 218 (365)
T ss_pred CCCChhHcceEEEehhhccCccceEEEEEcHHHHh
Confidence 33334688999999999999722455566666665
No 395
>smart00642 Aamy Alpha-amylase domain.
Probab=81.46 E-value=4.2 Score=32.31 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=38.6
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCe-----------------eeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG-----------------TVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG-----------------~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
|++.+.+.+..-.+ -.+.+|.+.+++....+ ..-+.++++++++.||++|+-||+|-+.
T Consensus 17 ~~~gi~~~l~yl~~---lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKD---LGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHH---CCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 56666666532111 14667777775433210 2224578999999999999999999883
No 396
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.92 E-value=22 Score=32.42 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=64.9
Q ss_pred HHHHHHHHHhHcCCCcEEEcCChH-HHHHHHHHHccccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCC
Q psy5413 103 CKELQEKAAKLAGKEAAIFVPSGT-MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQK 181 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~~~~~~~Gs-~a~~~al~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 181 (285)
...+...|+.+ |....+.---|. ++-.....++-....+.-++.+..|..+.+.--++ ..-++.++...+
T Consensus 53 AaNVa~NiasL-Ga~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s--------~nQQllRvD~Ee 123 (467)
T COG2870 53 AANVAKNIASL-GANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLS--------RNQQLLRLDFEE 123 (467)
T ss_pred HHHHHHHHHHc-CCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeec--------ccceEEEecccc
Confidence 45566777766 555443332332 22222222221111222344455555444322222 133455555433
Q ss_pred CCC-CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 182 DGT-FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 182 ~~~-~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
.+. .+.+.|.+.|+.. -.+..+++++- .+- |.+.+ .+++.++||++|+++++|-=
T Consensus 124 ~~~~~~~~~ll~~~~~~----l~~~~~vVLSD-Y~K--G~L~~---~q~~I~~ar~~~~pVLvDPK 179 (467)
T COG2870 124 KFPIEDENKLLEKIKNA----LKSFDALVLSD-YAK--GVLTN---VQKMIDLAREAGIPVLVDPK 179 (467)
T ss_pred cCcchhHHHHHHHHHHH----hhcCCEEEEec-ccc--ccchh---HHHHHHHHHHcCCcEEECCC
Confidence 222 3445555555441 11456777644 222 88888 99999999999999999944
No 397
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=76.81 E-value=25 Score=29.27 Aligned_cols=131 Identities=8% Similarity=0.091 Sum_probs=78.0
Q ss_pred EEEcCChHHHHHHHHHHccccCCCeEEe-----cCCc--ceeeecccccccccccccccceeeeeeecCCCCCCCHHHHH
Q psy5413 119 AIFVPSGTMGNLIAIMTHCDRRDSEIIV-----GDCS--HIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEME 191 (285)
Q Consensus 119 ~~~~~~Gs~a~~~al~~~~~~~g~~vi~-----~~~~--h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~ 191 (285)
+.+.++|-.++.++..++ +.|.+|.. +... +.+......+ ....++..|..++.........-..++|.
T Consensus 4 ~aL~SGGKDS~~Al~~a~--~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~--~~~~Ae~~gi~l~~~~~~g~~e~eve~L~ 79 (223)
T COG2102 4 IALYSGGKDSFYALYLAL--EEGHEVVYLLTVKPENGDSYMFHTPNLEL--AELQAEAMGIPLVTFDTSGEEEREVEELK 79 (223)
T ss_pred EEEEecCcHHHHHHHHHH--HcCCeeEEEEEEecCCCCeeeeeccchHH--HHHHHHhcCCceEEEecCccchhhHHHHH
Confidence 467888988888877764 46765432 2211 2211111000 01222445777777665433334678888
Q ss_pred HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhh-----hcccCCeEEEeccc
Q psy5413 192 AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAE-----VCASVDTVMFCLSK 266 (285)
Q Consensus 192 ~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~-----~~~~~dv~~~s~sK 266 (285)
++++.. +...|+. |.+.+......+-.+|++-|+-++.==-+-.... +..++++++.+.+|
T Consensus 80 ~~l~~l------~~d~iv~--------GaI~s~yqk~rve~lc~~lGl~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 80 EALRRL------KVDGIVA--------GAIASEYQKERVERLCEELGLKVYAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred HHHHhC------cccEEEE--------chhhhHHHHHHHHHHHHHhCCEEeecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 888763 4456665 9999999999999999999987654322222111 22467877766666
Q ss_pred c
Q psy5413 267 G 267 (285)
Q Consensus 267 ~ 267 (285)
.
T Consensus 146 ~ 146 (223)
T COG2102 146 E 146 (223)
T ss_pred c
Confidence 3
No 398
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=75.60 E-value=11 Score=31.21 Aligned_cols=50 Identities=18% Similarity=0.289 Sum_probs=36.6
Q ss_pred HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 187 ~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
++.++++++. .+.++-+-.-...+ .-+ .+..+++.++|++||+.+|+++=
T Consensus 24 ~~~ve~al~~-------Gv~~vQlR~K~~~~--~~~-~~~a~~~~~lc~~~~v~liINd~ 73 (211)
T COG0352 24 LEWVEAALKG-------GVTAVQLREKDLSD--EEY-LALAEKLRALCQKYGVPLIINDR 73 (211)
T ss_pred HHHHHHHHhC-------CCeEEEEecCCCCh--HHH-HHHHHHHHHHHHHhCCeEEecCc
Confidence 7899999977 56666665544332 111 56678999999999999999754
No 399
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.44 E-value=13 Score=31.97 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=46.4
Q ss_pred eecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEe
Q psy5413 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMD 244 (285)
Q Consensus 177 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~D 244 (285)
.|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.+. ++.+++=
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~~---Gv~gi~~~GstGE--~~~ls~~Er~~l~~~~~~~~~~~~~vi~g 72 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIEA---GVDGLVVLGTTGE--APTLTDEERKEVIEAVVEAVAGRVPVIAG 72 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 345567889999999887653222 5778888888877 7888988888888877764 4666543
No 400
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=70.44 E-value=12 Score=32.60 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=45.8
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.+. +++||+
T Consensus 11 Pf~~dg~iD~~~l~~l~~~l~~~---Gv~gi~v~GstGE--~~~Ls~eEr~~l~~~~~~~~~~~~pvi~ 74 (289)
T cd00951 11 HFDADGSFDEDAYRAHVEWLLSY---GAAALFAAGGTGE--FFSLTPDEYAQVVRAAVEETAGRVPVLA 74 (289)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc---CCCEEEECcCCcC--cccCCHHHHHHHHHHHHHHhCCCCCEEE
Confidence 44467889999999887653221 5788888888877 7888988888888877664 477775
No 401
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=70.40 E-value=12 Score=32.87 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=46.1
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++-.++.+.+.+. +++||+
T Consensus 18 Pf~~dg~iD~~~l~~li~~l~~~---Gv~Gi~~~GstGE--~~~Lt~eEr~~~~~~~~~~~~~~~pvi~ 81 (303)
T PRK03620 18 PFDADGSFDEAAYREHLEWLAPY---GAAALFAAGGTGE--FFSLTPDEYSQVVRAAVETTAGRVPVIA 81 (303)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc---CCCEEEECcCCcC--cccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 44567889999999988653222 5789999888887 6888988888888877653 466665
No 402
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=68.55 E-value=12 Score=32.73 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=46.4
Q ss_pred cCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 179 ~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
.+.++.+|.+.+++.++...+. .+..|++...++. +...+.++-+++.+.+.+. .+++|+
T Consensus 16 F~~dg~vD~~a~~~lv~~li~~---Gv~gi~~~GttGE--~~~Ls~eEr~~v~~~~v~~~~grvpvia 78 (299)
T COG0329 16 FDEDGSVDEEALRRLVEFLIAA---GVDGLVVLGTTGE--SPTLTLEERKEVLEAVVEAVGGRVPVIA 78 (299)
T ss_pred CCCCCCcCHHHHHHHHHHHHHc---CCCEEEECCCCcc--chhcCHHHHHHHHHHHHHHHCCCCcEEE
Confidence 3345789999999988654332 5789999999988 6888999999999999885 366665
No 403
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=67.68 E-value=7.3 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=20.0
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
++.+|+++.-..+ -+++.++|++++++++.=..
T Consensus 81 ~~P~iIvt~~~~~----------p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 81 NPPCIIVTRGLEP----------PPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp T-S-EEEETTT-------------HHHHHHHHHCT--EEEESS
T ss_pred CCCEEEEECcCCC----------CHHHHHHHHHhCCcEEEcCC
Confidence 7778888654433 48899999999999986443
No 404
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.71 E-value=25 Score=28.57 Aligned_cols=69 Identities=20% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMF 262 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~ 262 (285)
+.++++++.++. ....|.+..+.-+- ..+ ++++.+-.|++..+++.|.+-. .......++|++..
T Consensus 52 PT~~ev~~l~~a-------GadIIAlDaT~R~R---p~~---l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~T 118 (192)
T PF04131_consen 52 PTLKEVDALAEA-------GADIIALDATDRPR---PET---LEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGT 118 (192)
T ss_dssp -SHHHHHHHHHC-------T-SEEEEE-SSSS----SS----HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-
T ss_pred CCHHHHHHHHHc-------CCCEEEEecCCCCC---CcC---HHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEc
Confidence 578999999987 66788888766542 244 9999999999999999998754 33334457888877
Q ss_pred eccc
Q psy5413 263 CLSK 266 (285)
Q Consensus 263 s~sK 266 (285)
+++=
T Consensus 119 TLsG 122 (192)
T PF04131_consen 119 TLSG 122 (192)
T ss_dssp TTTT
T ss_pred cccc
Confidence 6553
No 405
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=66.04 E-value=17 Score=31.79 Aligned_cols=61 Identities=11% Similarity=0.044 Sum_probs=45.1
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++-+++.+.+.+. +++||+
T Consensus 16 Pf~~dg~iD~~~l~~li~~l~~~---Gv~gi~v~GstGE--~~~Lt~eEr~~v~~~~~~~~~g~~pvi~ 79 (296)
T TIGR03249 16 PFDADGSFDEAAYRENIEWLLGY---GLEALFAAGGTGE--FFSLTPAEYEQVVEIAVSTAKGKVPVYT 79 (296)
T ss_pred CcCCCCCcCHHHHHHHHHHHHhc---CCCEEEECCCCcC--cccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 34467889999999887654322 5788888888877 6888999999999877664 355554
No 406
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=65.99 E-value=13 Score=31.50 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.6
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC-eEEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI-PVHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi-~li~Dea 246 (285)
++.+|-+ |.+.+.+.++.+.+.++++++ ++++|-+
T Consensus 67 ~~~aiki--------G~l~~~~~~~~i~~~~~~~~~~~vVlDPv 102 (254)
T TIGR00097 67 PVDAAKT--------GMLASAEIVEAVARKLREYPVRPLVVDPV 102 (254)
T ss_pred CCCEEEE--------CCcCCHHHHHHHHHHHHhcCCCcEEECCc
Confidence 5678877 899999999999999999999 6999955
No 407
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=65.96 E-value=19 Score=31.35 Aligned_cols=61 Identities=20% Similarity=0.162 Sum_probs=45.3
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++..++.+.+.+. ++.+++
T Consensus 12 Pf~~dg~iD~~~l~~~i~~l~~~---Gv~gi~~~Gs~GE--~~~ls~~Er~~~~~~~~~~~~~~~~vi~ 75 (292)
T PRK03170 12 PFKEDGSVDFAALRKLVDYLIAN---GTDGLVVVGTTGE--SPTLTHEEHEELIRAVVEAVNGRVPVIA 75 (292)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECCcCCc--cccCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45567889999999887653222 5788888888877 7888988888888877764 456553
No 408
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=65.57 E-value=6.5 Score=34.83 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=68.5
Q ss_pred ccCCCeEEecCCcceeeecccccccccccccccceeeeeeecCCCC-CCCHHHHHHHhcccccccCCceEEEEEec---c
Q psy5413 138 DRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDG-TFDLDEMEAKFSTADNIHCASTSLVCVEN---T 213 (285)
Q Consensus 138 ~~~g~~vi~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~~~l~~~i~~~~~~~~~~~~~v~i~~---~ 213 (285)
.+.|..|++.. ..+++++++..=..|.+..|+.++.-+...|. ..-.++++.+..+ +...|++.. .
T Consensus 164 ~~~g~~VllaA---~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Akar-------~~DvvliDTAGRL 233 (340)
T COG0552 164 KQQGKSVLLAA---GDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAKAR-------GIDVVLIDTAGRL 233 (340)
T ss_pred HHCCCeEEEEe---cchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHHHc-------CCCEEEEeCcccc
Confidence 35788777632 22333444331023334567777765422221 1345677777766 667777765 2
Q ss_pred cCCCCeeeCCHHHHHHHHHHHHHcC------CeEEEeCccC--Chh---hhcc--cCCeEEEecccccCcceeEEeec
Q psy5413 214 HNYCGGTVLPMQWLRELKARCQEHN------IPVHMDGARL--PLA---EVCA--SVDTVMFCLSKGLGAPVGSILAG 278 (285)
Q Consensus 214 ~n~~gG~~~~~~~l~~i~~la~~~g------i~li~Dea~~--~~~---~~~~--~~dv~~~s~sK~l~~p~gg~~~~ 278 (285)
||- ..=.++|++|.+++++.. ++++.|..-+ ++. ...+ +.|-++.| |.=|...||++++
T Consensus 234 hnk----~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlT--KlDgtAKGG~il~ 305 (340)
T COG0552 234 HNK----KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILT--KLDGTAKGGIILS 305 (340)
T ss_pred cCc----hhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCCceEEEE--ecccCCCcceeee
Confidence 332 122456999999999865 6777798865 221 1112 23433443 7555566776654
No 409
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=65.05 E-value=18 Score=31.51 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=46.2
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+ ...+..|++...++. +..++.++..++.+.+.++ ++++|+
T Consensus 14 Pf~~dg~iD~~~~~~li~~l~~--~~Gv~gi~v~GstGE--~~~Ls~eEr~~~~~~~~~~~~~~~~via 78 (293)
T PRK04147 14 PFDEDGQIDEQGLRRLVRFNIE--KQGIDGLYVGGSTGE--AFLLSTEEKKQVLEIVAEEAKGKVKLIA 78 (293)
T ss_pred cCCCCCCcCHHHHHHHHHHHHh--cCCCCEEEECCCccc--cccCCHHHHHHHHHHHHHHhCCCCCEEe
Confidence 4456788999999998865422 026788999888877 6888989999888877764 466665
No 410
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=64.99 E-value=19 Score=31.15 Aligned_cols=61 Identities=20% Similarity=0.173 Sum_probs=44.5
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.++ ++.+++
T Consensus 11 Pf~~dg~iD~~~~~~~i~~l~~~---Gv~gl~v~GstGE--~~~lt~~Er~~l~~~~~~~~~~~~~vi~ 74 (284)
T cd00950 11 PFKDDGSVDFDALERLIEFQIEN---GTDGLVVCGTTGE--SPTLSDEEHEAVIEAVVEAVNGRVPVIA 74 (284)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECCCCcc--hhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 44567889999998887653222 5778888877776 6888889999998888775 455543
No 411
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=64.72 E-value=19 Score=31.39 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=45.7
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCc-eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEe
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCAS-TSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMD 244 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~-~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~D 244 (285)
|.++++.+|.+.+++.++...+. . +..|++...++. +..++.++.+++.+.+.+. .++|++=
T Consensus 11 Pf~~dg~iD~~~~~~~i~~~i~~---G~v~gi~~~GstGE--~~~Lt~eEr~~~~~~~~~~~~~~~pvi~g 76 (290)
T TIGR00683 11 SFNEDGTINEKGLRQIIRHNIDK---MKVDGLYVGGSTGE--NFMLSTEEKKEIFRIAKDEAKDQIALIAQ 76 (290)
T ss_pred CCCCCCCcCHHHHHHHHHHHHhC---CCcCEEEECCcccc--cccCCHHHHHHHHHHHHHHhCCCCcEEEe
Confidence 44567889999999888653221 4 778888888887 6888988999998877764 4666654
No 412
>KOG0630|consensus
Probab=64.53 E-value=12 Score=35.03 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHhcccccccCCceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcC-CeEEEeCccC------C----h
Q psy5413 183 GTFDLDEMEAKFSTADNIHCASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHN-IPVHMDGARL------P----L 250 (285)
Q Consensus 183 ~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~g-i~li~Dea~~------~----~ 250 (285)
+.+|...+++.|+++...+ ++.+|++.- ...-+ |...- +-+|.++|++|. .|++.-+--. . +
T Consensus 272 griDhh~feKiideDlaag--kkPLilia~iGasi~-GqnDm---i~kildi~eahakfWLHasGhaiAALt~aepnnil 345 (838)
T KOG0630|consen 272 GRIDHHLFEKIIDEDLAAG--KKPLILIADIGASIC-GQNDM---ILKILDICEAHAKFWLHASGHAIAALTCAEPNNIL 345 (838)
T ss_pred ccccHHHHHHHHHHHHhCC--CCCeEEEEeccchhh-cchHH---HHHHHHHHHHhhheeEeeccchhhheeecCcccch
Confidence 5789999999998753332 444555443 33333 44444 999999999996 9998875422 1 1
Q ss_pred hhhcccCCeEEEecccccCccee
Q psy5413 251 AEVCASVDTVMFCLSKGLGAPVG 273 (285)
Q Consensus 251 ~~~~~~~dv~~~s~sK~l~~p~g 273 (285)
.-..+..|.......-|||-|-.
T Consensus 346 ~HV~eqldSMal~ialWLGiPSa 368 (838)
T KOG0630|consen 346 GHVEEQLDSMALNIALWLGIPSA 368 (838)
T ss_pred hHHHHHHhhccchhHHHhCCCCC
Confidence 11123456666666777777543
No 413
>PRK10785 maltodextrin glucosidase; Provisional
Probab=64.24 E-value=13 Score=36.07 Aligned_cols=58 Identities=16% Similarity=0.180 Sum_probs=41.3
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-------------CHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-------------PMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-------------~~~~l~~i~~la~~~gi~li~Dea 246 (285)
|++-|.+.|.--.+ -.+.+|.++++....+..-+ +.++++++++.||++|+-||+|-+
T Consensus 177 Dl~GI~~kLdYL~~---LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 177 DLDGISEKLPYLKK---LGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred CHHHHHHHHHHHHH---cCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 77877777643211 25778999885543212222 247899999999999999999999
No 414
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=64.13 E-value=22 Score=31.35 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
.++.+++++.++.... .-.+-.+|+++..-- .-++.+++.++.++|++.|+.+++|-.
T Consensus 110 ~is~~~~~~~l~~~~~-~l~~~d~VvlsGSlP----~g~~~d~y~~li~~~~~~g~~vilD~S 167 (310)
T COG1105 110 EISEAELEQFLEQLKA-LLESDDIVVLSGSLP----PGVPPDAYAELIRILRQQGAKVILDTS 167 (310)
T ss_pred CCCHHHHHHHHHHHHH-hcccCCEEEEeCCCC----CCCCHHHHHHHHHHHHhcCCeEEEECC
Confidence 4555555555443211 011234566655331 235678899999999999999999977
No 415
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=63.85 E-value=32 Score=23.69 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=32.8
Q ss_pred HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 187 ~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
.++..++|+.. +.++|++..-. ++...+.+..+|++++++++.-..
T Consensus 16 ~~~v~kai~~g------kaklViiA~D~--------~~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 16 TKQTVKALKRG------SVKEVVVAEDA--------DPRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHHHHHHcC------CeeEEEEECCC--------CHHHHHHHHHHHHHcCCCEEEECC
Confidence 45666777652 67888884422 334589999999999999977664
No 416
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=63.59 E-value=20 Score=31.34 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=45.4
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHH---cCCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE---HNIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~---~gi~li~ 243 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++..++.+.+.+ .+++|++
T Consensus 11 Pf~~dg~iD~~~l~~lv~~~~~~---Gv~gi~v~GstGE--~~~Ls~~Er~~l~~~~~~~~~g~~pvi~ 74 (294)
T TIGR02313 11 PFKRNGDIDEEALRELIEFQIEG---GSHAISVGGTSGE--PGSLTLEERKQAIENAIDQIAGRIPFAP 74 (294)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECccCcc--cccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 45567889999999887653221 5788999888887 788998888888887654 2466664
No 417
>PLN02417 dihydrodipicolinate synthase
Probab=62.89 E-value=19 Score=31.18 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=47.5
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEeCc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMDGA 246 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~Dea 246 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.+. ++++++--.
T Consensus 12 Pf~~~g~iD~~~~~~~i~~l~~~---Gv~Gi~~~GstGE--~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~ 78 (280)
T PLN02417 12 PYLPDGRFDLEAYDSLVNMQIEN---GAEGLIVGGTTGE--GQLMSWDEHIMLIGHTVNCFGGKIKVIGNTG 78 (280)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECccCcc--hhhCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 44567889999999887653222 5789999888887 7888989999998876663 467765544
No 418
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=62.60 E-value=14 Score=29.61 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=30.9
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC----HHHHHHHHHHHHHcCCeEEE
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP----MQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~----~~~l~~i~~la~~~gi~li~ 243 (285)
+++.+++.+... .++.+|++.+.+...++...+ ...++.+.++|+++|+.+++
T Consensus 128 ~~~~l~~~~~~~-----~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 128 DLEELEAALKEL-----YGPDLVVIDPLQSLHDGDENSNSAVAQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHHHHHHHTT---------SEEEEE-GGGG--S-TT-HHHHHHHHHHHHHHHHHH--EEEE
T ss_pred HHHHHHHHHhhc-----CCCcEEEEcCHHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 356677776551 157899999988776443332 24688889999999988764
No 419
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=61.77 E-value=9.4 Score=32.83 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea 246 (285)
.++++++++.||++|+-||+|-+
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhhccccccceEEEeee
Confidence 56799999999999999999998
No 420
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=61.01 E-value=26 Score=30.34 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=45.5
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEe
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMD 244 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~D 244 (285)
|.++++.+|.+.+++.++...+. .+..|++...++. +..++.++-+++.+.+.+. ++.+++=
T Consensus 9 Pf~~~g~iD~~~~~~~i~~l~~~---Gv~Gi~~~GstGE--~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g 73 (285)
T TIGR00674 9 PFKEDGSVDFAALEKLIDFQIEN---GTDAIVVVGTTGE--SPTLSHEEHKKVIEFVVDLVNGRVPVIAG 73 (285)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHc---CCCEEEECccCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 44567889999999887653222 5778888888877 6888889899988877764 3665543
No 421
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=60.66 E-value=10 Score=36.78 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
=++++++++++.||++||-||+|-|+.
T Consensus 211 GtPedfk~fVD~aH~~GIgViLD~V~~ 237 (628)
T COG0296 211 GTPEDFKALVDAAHQAGIGVILDWVPN 237 (628)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 357889999999999999999999977
No 422
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=60.49 E-value=31 Score=28.45 Aligned_cols=69 Identities=20% Similarity=0.113 Sum_probs=47.9
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMF 262 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~ 262 (285)
..+++++++.+. ....|.+..+.-+ ... +.++++.+..|.+|.+++.|..-. ++.....++|++-.
T Consensus 86 ptlkeVd~L~~~-------Ga~IIA~DaT~R~---RP~--~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGT 153 (229)
T COG3010 86 PTLKEVDALAEA-------GADIIAFDATDRP---RPD--GDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGT 153 (229)
T ss_pred ccHHHHHHHHHC-------CCcEEEeecccCC---CCc--chHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEec
Confidence 468899999887 6677777765532 111 148999988888999999998855 34444457777755
Q ss_pred ecc
Q psy5413 263 CLS 265 (285)
Q Consensus 263 s~s 265 (285)
++|
T Consensus 154 TLs 156 (229)
T COG3010 154 TLS 156 (229)
T ss_pred ccc
Confidence 444
No 423
>COG0108 RibB 3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme metabolism]
Probab=59.59 E-value=16 Score=29.93 Aligned_cols=35 Identities=31% Similarity=0.381 Sum_probs=28.5
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
++++|++|-.+- . |.+.. .+++.++|++||+.++.
T Consensus 156 ~Pa~VicEi~~~-d-G~mar---~~~~~~fa~~h~l~~it 190 (203)
T COG0108 156 KPAGVICEIMND-D-GTMAR---LPELEEFAKEHGLPVIT 190 (203)
T ss_pred CCcEEEEEEeCC-C-ccccC---hHHHHHHHHHcCCcEEE
Confidence 567887777665 4 89999 88888999999999874
No 424
>KOG2790|consensus
Probab=58.87 E-value=60 Score=28.32 Aligned_cols=192 Identities=9% Similarity=0.043 Sum_probs=92.8
Q ss_pred CeeeeeccCCcCCCcHHHHHHHHhccc--C---------CCCccCChhHHHHHHHHHhHcCCCc---EEEcCChHHHHHH
Q psy5413 66 IRTVDIRSDTISKPTMEMKNYMFNCEV--G---------DDVYLEDPTCKELQEKAAKLAGKEA---AIFVPSGTMGNLI 131 (285)
Q Consensus 66 ~~~~~~~~~~~~~~~~~v~~a~~~~~~--~---------~~~y~~~~~~~~l~~~la~~~g~~~---~~~~~~Gs~a~~~ 131 (285)
.++++|+.+-...+++-++++-.+... + |+.-.......+.+..+.+++..+. ++|..+|-..-.+
T Consensus 6 ~~vvnFaaGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFa 85 (370)
T KOG2790|consen 6 ERVVNFAAGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFA 85 (370)
T ss_pred cceeecCCCcccCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCccccc
Confidence 456778777666677766666555432 1 1111122346777888888887653 4555554433333
Q ss_pred HH-HHccc-cCCC---eEEecCCcceeeeccccccccccccccc-ceeeeeeecCC---CCCCCHHHHHHHhcccccccC
Q psy5413 132 AI-MTHCD-RRDS---EIIVGDCSHIMLWEQGGASQTSVYSQIG-RVLMRGVTNQK---DGTFDLDEMEAKFSTADNIHC 202 (285)
Q Consensus 132 al-~~~~~-~~g~---~vi~~~~~h~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~---~~~~d~~~l~~~i~~~~~~~~ 202 (285)
|+ ..++. +.|+ -|+. ..+ .+-+.+. +..+ .+..+..+..+ ...+|.+.++...+
T Consensus 86 Av~lNL~glK~g~~AdYiVT-GsW-------S~KA~~E--Akk~~~~~~V~~~~k~y~ygkvPd~~~w~~~~d------- 148 (370)
T KOG2790|consen 86 AVPLNLIGLKHGRCADYVVT-GSW-------SAKAAEE--AKKYGTPNIVIPKLKSYTYGKVPDPSTWELNPD------- 148 (370)
T ss_pred ccchhhhccccCCccceEEe-ccc-------cHHHHHH--HHhhCCceEEeccccccccCcCCChhhcccCCC-------
Confidence 33 22221 4443 2332 111 1111000 0111 12222222211 12345555553332
Q ss_pred CceEEEEEec-ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC--ChhhhcccCCeEEEecccccCcceeEEeecC
Q psy5413 203 ASTSLVCVEN-THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL--PLAEVCASVDTVMFCLSKGLGAPVGSILAGP 279 (285)
Q Consensus 203 ~~~~~v~i~~-~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~--~~~~~~~~~dv~~~s~sK~l~~p~gg~~~~~ 279 (285)
-+.|+.|. .+= .|.-++. +. +-.-+|.++++|-..- +-..-....++++.+..|.+|..--.+++-+
T Consensus 149 --a~yvyyCaNETV--HGVEf~~--~P----~~~~~~~vlVaDmSSnflSrpvDvsk~gvi~aGAQKN~G~aG~Tvvivr 218 (370)
T KOG2790|consen 149 --ASYVYYCANETV--HGVEFDF--IP----VNDPKGAVLVADMSSNFLSRPVDVSKFGVIFAGAQKNVGPAGVTVVIVR 218 (370)
T ss_pred --ccEEEEecCcee--eceecCC--CC----CCCCCCceEEEecccchhcCCccchhcceEEeccccccCccccEEEEEe
Confidence 23454443 221 1565552 21 2346799999997633 3333345677889999999886323344455
Q ss_pred ccccc
Q psy5413 280 EEFIQ 284 (285)
Q Consensus 280 ~~~i~ 284 (285)
++++.
T Consensus 219 ~dllg 223 (370)
T KOG2790|consen 219 KDLLG 223 (370)
T ss_pred hhhhc
Confidence 66654
No 425
>PRK12412 pyridoxal kinase; Reviewed
Probab=57.71 E-value=22 Score=30.40 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=29.7
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCe-EEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP-VHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~-li~Dea 246 (285)
++++|.+ |.+.+.+.++.+++.+++++.. +++|-+
T Consensus 72 ~~~~iki--------G~l~~~~~v~~i~~~~~~~~~~~vv~DPv 107 (268)
T PRK12412 72 GVDALKT--------GMLGSVEIIEMVAETIEKHNFKNVVVDPV 107 (268)
T ss_pred CCCEEEE--------CCCCCHHHHHHHHHHHHhcCCCCEEECcC
Confidence 5677877 8888999999999999998876 888976
No 426
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=57.44 E-value=53 Score=29.33 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEe-------cccCCCCeee-CCHHHHHHHHHHHHHcCCeEEEeCc-cCC---hh
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVE-------NTHNYCGGTV-LPMQWLRELKARCQEHNIPVHMDGA-RLP---LA 251 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~-------~~~n~~gG~~-~~~~~l~~i~~la~~~gi~li~Dea-~~~---~~ 251 (285)
..+.+..+++++. ...+|.+. ...-.+ |.- ....-+.++++.++++++++|.|.= +.+ ..
T Consensus 158 V~T~e~a~~Li~a-------GAD~ikVgiGpGSicttR~~~-Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~K 229 (343)
T TIGR01305 158 VVTGEMVEELILS-------GADIVKVGIGPGSVCTTRTKT-GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAK 229 (343)
T ss_pred ccCHHHHHHHHHc-------CCCEEEEcccCCCcccCceeC-CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHH
Confidence 5688899988876 34455443 222233 333 3445577777777778999999965 332 22
Q ss_pred hhcccCCeEEEe
Q psy5413 252 EVCASVDTVMFC 263 (285)
Q Consensus 252 ~~~~~~dv~~~s 263 (285)
.+.-++|.+..+
T Consensus 230 ALA~GAd~VMlG 241 (343)
T TIGR01305 230 AFGAGADFVMLG 241 (343)
T ss_pred HHHcCCCEEEEC
Confidence 334567766444
No 427
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=56.40 E-value=26 Score=30.81 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEeCc
Q psy5413 182 DGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMDGA 246 (285)
Q Consensus 182 ~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~Dea 246 (285)
++.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.+. +++||+=-.
T Consensus 23 ~g~iD~~~l~~lv~~li~~---Gv~Gi~v~GstGE--~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~ 85 (309)
T cd00952 23 TDTVDLDETARLVERLIAA---GVDGILTMGTFGE--CATLTWEEKQAFVATVVETVAGRVPVFVGAT 85 (309)
T ss_pred CCCcCHHHHHHHHHHHHHc---CCCEEEECccccc--chhCCHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 3789999999888654222 5789999888887 6888989999998877663 466665433
No 428
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=56.29 E-value=24 Score=30.55 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=44.6
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEEe
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHMD 244 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~D 244 (285)
|.+.++.+|.+.+++.++...+. .+..+++...++. +..++.++.+++.+++.++ ++++|+=
T Consensus 12 Pf~~dg~id~~~~~~~i~~l~~~---Gv~gl~~~GstGE--~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g 76 (289)
T PF00701_consen 12 PFNADGSIDEDALKRLIDFLIEA---GVDGLVVLGSTGE--FYSLTDEERKELLEIVVEAAAGRVPVIAG 76 (289)
T ss_dssp -BETTSSB-HHHHHHHHHHHHHT---TSSEEEESSTTTT--GGGS-HHHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc---CCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHccCceEEEec
Confidence 34467889999999887643222 5788999888887 7889999999999888773 5677763
No 429
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=56.04 E-value=23 Score=29.55 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=36.9
Q ss_pred cceeeeee-ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 170 GRVLMRGV-TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 170 ~g~~~~~~-~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.|..+..+ +...+...-.+.+++++.. ++.+|++.+..... +..+.+-|++.|++|+.
T Consensus 27 ~g~~~~~~~~~~~d~~~q~~~i~~~i~~-------~~d~Iiv~~~~~~~---------~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 27 LGYEVEIVFDAQNDPEEQIEQIEQAISQ-------GVDGIIVSPVDPDS---------LAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HTCEEEEEEESTTTHHHHHHHHHHHHHT-------TESEEEEESSSTTT---------THHHHHHHHHTTSEEEE
T ss_pred cCCEEEEeCCCCCCHHHHHHHHHHHHHh-------cCCEEEecCCCHHH---------HHHHHHHHhhcCceEEE
Confidence 35555553 3322222234556666766 78899987766543 56677778999999887
No 430
>KOG1465|consensus
Probab=55.87 E-value=1.4e+02 Score=26.19 Aligned_cols=107 Identities=11% Similarity=0.101 Sum_probs=61.6
Q ss_pred CCcEEEcCChHHHHHHHHHHccccCCC--eEEecCCcceee-eccc-ccccccccccccceeeeeeecCCCCCCCHHHHH
Q psy5413 116 KEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIML-WEQG-GASQTSVYSQIGRVLMRGVTNQKDGTFDLDEME 191 (285)
Q Consensus 116 ~~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~~~h~~~-~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~ 191 (285)
...++++.+.|..++..++.+.. +|+ .|++.+..-.+. .... .++ ..|.+..-++. .++-
T Consensus 162 snEviLT~g~SrTV~~FL~~A~k-k~Rkf~viVaE~~p~~qgH~~Ak~la-------~~giettVI~d--------aaVf 225 (353)
T KOG1465|consen 162 SNEVILTLGSSRTVENFLKHAAK-KGRKFRVIVAEGAPNNQGHELAKPLA-------QAGIETTVIPD--------AAVF 225 (353)
T ss_pred cCceEEecCccHHHHHHHHHHHh-ccCceEEEEeecCCcccchHhhHHHH-------HcCCeeEEecc--------HHHH
Confidence 34568888899999999999874 443 355532211000 1111 111 23455444432 3455
Q ss_pred HHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 192 AKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 192 ~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.+.+ --++|+-...--+.||...+ .-...++..||+|-+++++=.-
T Consensus 226 A~Msr-------VnKVIigt~avl~NGgl~~~-~G~~~vAlaAk~h~vPv~VlAp 272 (353)
T KOG1465|consen 226 AMMSR-------VNKVIIGTHAVLANGGLRAP-SGVHTVALAAKHHSVPVIVLAP 272 (353)
T ss_pred HHhhh-------cceEEEEeeeEecCCCeecc-chHHHHHHHHHhcCCcEEEecc
Confidence 55554 23566666644444464444 4478888999999999998654
No 431
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=55.59 E-value=58 Score=22.50 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
+...++|+.. +.++|++..-. +....+++.+.|+.++++++.....
T Consensus 14 ~~vlkaIk~g------kakLViiA~Da--------~~~~~k~i~~~c~~~~Vpv~~~~t~ 59 (82)
T PRK13601 14 KQTLKAITNC------NVLQVYIAKDA--------EEHVTKKIKELCEEKSIKIVYIDTM 59 (82)
T ss_pred HHHHHHHHcC------CeeEEEEeCCC--------CHHHHHHHHHHHHhCCCCEEEeCCH
Confidence 4556666542 77888884422 3445899999999999999765543
No 432
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=54.97 E-value=14 Score=34.80 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.++++++++.||++||-||+|.|
T Consensus 79 t~~dl~~Li~~~H~~Gi~vi~D~V 102 (479)
T PRK09441 79 TKEELLNAIDALHENGIKVYADVV 102 (479)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 356799999999999999999999
No 433
>PRK06683 hypothetical protein; Provisional
Probab=54.89 E-value=54 Score=22.63 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+...++|+.. +.++|++..- .++...+++.++|+.++++++.-+.
T Consensus 17 ~~v~kaik~g------kaklViiA~D--------a~~~~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 17 KRTLEAIKNG------IVKEVVIAED--------ADMRLTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred HHHHHHHHcC------CeeEEEEECC--------CCHHHHHHHHHHHHhcCCCEEEECC
Confidence 4556666542 7788888442 3344489999999999999977664
No 434
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=54.61 E-value=64 Score=27.02 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=38.8
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccCChhhhcccCCeE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTV 260 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~~~~~~~~~~dv~ 260 (285)
...+.+++..+. .|.+|++-...+ ...+.+.++.+..|++.++++. +. +.......++|.+
T Consensus 15 ~~~~~~~~~~~~-------gtdai~vGGS~~------vt~~~~~~~v~~ik~~~lPvil-fp-~~~~~i~~~aDa~ 75 (223)
T TIGR01768 15 EADEIAKAAAES-------GTDAILIGGSQG------VTYEKTDTLIEALRRYGLPIIL-FP-SNPTNVSRDADAL 75 (223)
T ss_pred ccHHHHHHHHhc-------CCCEEEEcCCCc------ccHHHHHHHHHHHhccCCCEEE-eC-CCccccCcCCCEE
Confidence 355556655555 678888844332 4566799999999999999997 44 2222333445533
No 435
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=54.28 E-value=30 Score=30.57 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=38.1
Q ss_pred CHHHHHHHhcccccccCCceEEEEEeccc---CCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTH---NYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~---n~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
+++++++.+++..+.+.+.+|+...-.+. ...++..++.+.++++.+.|+++|+.+.+=.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEe
Confidence 45666666655444455566766532221 2222457889999999999999997776543
No 436
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=53.45 E-value=44 Score=30.08 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEec-----ccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC-C---------
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVEN-----THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL-P--------- 249 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~-----~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~-~--------- 249 (285)
.+++++..+++.-...+ +..+++++. .+..+ -...+ |..|..+.+.+++++|+|-.|+ +
T Consensus 219 ~t~ee~~~A~e~i~~~G--n~~viL~erG~rtf~s~y~-~~~~d---l~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a 292 (352)
T PRK13396 219 ATIDEWLMAAEYILAAG--NPNVILCERGIRTFDRQYT-RNTLD---LSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMA 292 (352)
T ss_pred CCHHHHHHHHHHHHHcC--CCeEEEEecCCccCcCCCC-CCCcC---HHHHHHHHHhhCCCEEECCcccCCcHHHHHHHH
Confidence 37777777765422212 446777777 22333 35566 8888888777799999999987 2
Q ss_pred hhhhcccCC--eE--EEecccccC
Q psy5413 250 LAEVCASVD--TV--MFCLSKGLG 269 (285)
Q Consensus 250 ~~~~~~~~d--v~--~~s~sK~l~ 269 (285)
.....-++| ++ -.+..|.++
T Consensus 293 ~AAva~GAdGliIE~H~~pd~Als 316 (352)
T PRK13396 293 MAAIAAGTDSLMIEVHPNPAKALS 316 (352)
T ss_pred HHHHhhCCCeEEEEecCCcccCCC
Confidence 122235777 44 456666654
No 437
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=52.26 E-value=38 Score=24.25 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=27.5
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
..+.+..++.. .+++|+++. |...+ +++.++|++++++++.=
T Consensus 50 R~di~~~a~~~-------~i~~iIltg------~~~~~----~~v~~la~~~~i~vi~t 91 (105)
T PF07085_consen 50 REDIQLAAIEA-------GIACIILTG------GLEPS----EEVLELAKELGIPVIST 91 (105)
T ss_dssp -HHHHHHHCCT-------TECEEEEET------T--------HHHHHHHHHHT-EEEE-
T ss_pred cHHHHHHHHHh-------CCCEEEEeC------CCCCC----HHHHHHHHHCCCEEEEE
Confidence 45667777776 688888864 33344 78888999999998863
No 438
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=51.81 E-value=35 Score=28.44 Aligned_cols=57 Identities=18% Similarity=0.269 Sum_probs=37.3
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCee-eCCH-----HHHHHHHHHHHHcCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT-VLPM-----QWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~-~~~~-----~~l~~i~~la~~~gi~li~ 243 (285)
+++++|++.|......+ +++.|+|.+.+....+. ..+. +.+++|.++|+++|+.+++
T Consensus 106 ~~~~~l~~~i~~~~~~~--~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~ 168 (242)
T cd00984 106 LTVSDIRSRARRLKKEH--GLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA 168 (242)
T ss_pred CCHHHHHHHHHHHHHhc--CCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 57777877765432222 67899999977542121 1122 3467888999999998887
No 439
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=51.41 E-value=15 Score=25.43 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCeEEEeCc
Q psy5413 227 LRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 227 l~~i~~la~~~gi~li~Dea 246 (285)
=++|+++|+++|++++.|..
T Consensus 29 A~~I~~~A~e~~VPi~~~~~ 48 (82)
T TIGR00789 29 AERIIEIAKKHGIPIVEDPD 48 (82)
T ss_pred HHHHHHHHHHcCCCEEeCHH
Confidence 57899999999999999976
No 440
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=51.35 E-value=40 Score=21.98 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=20.1
Q ss_pred EEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC
Q psy5413 207 LVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239 (285)
Q Consensus 207 ~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi 239 (285)
+|-+-.|. |.+ +.+.++.|++++++||.
T Consensus 11 ~v~~~~~~----G~i-~~~~l~~la~ia~~yg~ 38 (69)
T PF03460_consen 11 MVRIRIPG----GRI-SAEQLRALAEIAEKYGD 38 (69)
T ss_dssp EEEEB-GG----GEE-EHHHHHHHHHHHHHHST
T ss_pred EEEEeCCC----EEE-CHHHHHHHHHHHHHhCC
Confidence 45554444 777 77889999999998884
No 441
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=49.92 E-value=41 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=27.5
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCcc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGAR 247 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~ 247 (285)
++.+|.+ |.+.+.+.++.|.++.+++++++++|=+-
T Consensus 60 ~~~aiki--------G~l~~~~~v~~i~~~l~~~~~~vV~DPVm 95 (246)
T PF08543_consen 60 KFDAIKI--------GYLGSAEQVEIIADFLKKPKIPVVLDPVM 95 (246)
T ss_dssp C-SEEEE---------S-SSHHHHHHHHHHHHHTTTEEEEE---
T ss_pred cccEEEE--------cccCCchhhhhHHHHHhccCCCEEEeccc
Confidence 6788888 99999999999999999899999999873
No 442
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=48.96 E-value=50 Score=28.61 Aligned_cols=61 Identities=11% Similarity=0.152 Sum_probs=45.1
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCC-ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc---CCeEEE
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCA-STSLVCVENTHNYCGGTVLPMQWLRELKARCQEH---NIPVHM 243 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~-~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~---gi~li~ 243 (285)
|.++++.+|.+.+++.++...+ . .+..|++...++. +..++.++.+++.+.+.+. .+.+|+
T Consensus 11 Pf~~dg~iD~~~~~~~i~~l~~---~~Gv~gi~~~GstGE--~~~Lt~~Er~~~~~~~~~~~~~~~~via 75 (288)
T cd00954 11 PFDENGEINEDVLRAIVDYLIE---KQGVDGLYVNGSTGE--GFLLSVEERKQIAEIVAEAAKGKVTLIA 75 (288)
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCEEEECcCCcC--cccCCHHHHHHHHHHHHHHhCCCCeEEe
Confidence 4456788999999998876322 2 3678888888877 6888888888888877663 466666
No 443
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=48.26 E-value=67 Score=22.99 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=30.5
Q ss_pred HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
+...++|+.. +.++|++..- .|.+..+++..+|++++++++.-
T Consensus 22 ~~v~kai~~g------kaklViiA~D--------~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 22 KRTIKAIKLG------KAKLVIVASN--------CPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHcC------CceEEEEeCC--------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556666542 6788888532 34556899999999999998664
No 444
>PLN00196 alpha-amylase; Provisional
Probab=48.09 E-value=21 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.++++++++.||++||-||+|-|
T Consensus 90 t~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 90 NEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 346799999999999999999999
No 445
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=47.66 E-value=1.6e+02 Score=24.22 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.7
Q ss_pred eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 205 ~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
+.+|.+.-.| .++.+.+..+.+++.+.|++||+=+-..
T Consensus 83 ~~~v~IDEaQ------F~~~~~v~~l~~lad~lgi~Vi~~GL~~ 120 (201)
T COG1435 83 VDCVLIDEAQ------FFDEELVYVLNELADRLGIPVICYGLDT 120 (201)
T ss_pred cCEEEEehhH------hCCHHHHHHHHHHHhhcCCEEEEecccc
Confidence 6788886654 5677889999999999999999876644
No 446
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=47.46 E-value=57 Score=27.57 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=38.3
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.+..+++.++.. ++-+..+=+.--+ -.++|.+.|++..++||+|||.+..-+.
T Consensus 9 l~~~~~~d~Le~~----g~yID~lKfg~Gt----~~l~~~~~l~eki~la~~~~V~v~~GGt 62 (237)
T TIGR03849 9 LPPKFVEDYLKVC----GDYITFVKFGWGT----SALIDRDIVKEKIEMYKDYGIKVYPGGT 62 (237)
T ss_pred CCHHHHHHHHHHh----hhheeeEEecCce----EeeccHHHHHHHHHHHHHcCCeEeCCcc
Confidence 3667777777542 1134444443333 5788989999999999999999998874
No 447
>PLN02672 methionine S-methyltransferase
Probab=47.09 E-value=2.1e+02 Score=30.10 Aligned_cols=143 Identities=11% Similarity=0.003 Sum_probs=79.1
Q ss_pred HHHHHHhcccCC--CCccCChhHHHHHHHHHhHcC--------CCcEEEcCChHHHHHHHHHHccccCC----CeEE---
Q psy5413 83 MKNYMFNCEVGD--DVYLEDPTCKELQEKAAKLAG--------KEAAIFVPSGTMGNLIAIMTHCDRRD----SEII--- 145 (285)
Q Consensus 83 v~~a~~~~~~~~--~~y~~~~~~~~l~~~la~~~g--------~~~~~~~~~Gs~a~~~al~~~~~~~g----~~vi--- 145 (285)
.+..+...+.+. .-|.+..+...+|+.++.++. .+.+++.++=..|++.+++.+. +. |+-+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 483 (1082)
T PLN02672 406 FLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFS--PRLAIVDEHLTRW 483 (1082)
T ss_pred HHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhC--hHHHhhhhhhhcc
Confidence 334444444432 234455567889999988863 3567899999999999999853 21 1111
Q ss_pred ecCCcceeeecccccccccccccccceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHH
Q psy5413 146 VGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225 (285)
Q Consensus 146 ~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~ 225 (285)
++..+-.+...-++.. .-.....+.++.-|.+ -+.+.+.|++. ++++|++.--. +-.....
T Consensus 484 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~~ 544 (1082)
T PLN02672 484 LPKKWLTSLAIENATS---DSKSDDVITVIEAPRQ------SDLVIELIKKL------KPQVVVTGMAD----FEMRTST 544 (1082)
T ss_pred CCHHHHhHhhhhcccc---cCccCCeEEEEeCCCc------chHHHHHHHhC------CCeEEEEeccc----hhhhhHH
Confidence 1111100000000000 0000112222232321 12455666553 56777775555 4455556
Q ss_pred HHHHHHHHHHHcCCeEEEeCc
Q psy5413 226 WLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 226 ~l~~i~~la~~~gi~li~Dea 246 (285)
.++.|.+.+++-|++++.|..
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~ 565 (1082)
T PLN02672 545 AFEHLLNVTAEIGARLFLDIS 565 (1082)
T ss_pred HHHHHHHHHHhhCcEEEEehh
Confidence 699999999999999999988
No 448
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=46.08 E-value=1.6e+02 Score=25.90 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=58.9
Q ss_pred HcCCCcEEEcCChHHHHHHHHHHccccCCC--eEEecC--CcceeeecccccccccccccccceeeeeeecCCCCCCCHH
Q psy5413 113 LAGKEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGD--CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188 (285)
Q Consensus 113 ~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~--~vi~~~--~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~ 188 (285)
++.....++|.+-|.++...++.+. ..++ .|++.+ |.+-....+-.+ ...|..+..++. .
T Consensus 116 ~i~dg~~IlTh~~S~~v~~~l~~A~-~~~k~~~V~VtESRP~~eG~~~ak~L-------~~~gI~~~~I~D--------s 179 (301)
T COG1184 116 RIHDGDVILTHSFSKTVLEVLKTAA-DRGKRFKVIVTESRPRGEGRIMAKEL-------RQSGIPVTVIVD--------S 179 (301)
T ss_pred hccCCCEEEEecCcHHHHHHHHHhh-hcCCceEEEEEcCCCcchHHHHHHHH-------HHcCCceEEEec--------h
Confidence 3334456899999999999998877 4666 456532 221100000012 234655555543 1
Q ss_pred HHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 189 ~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
++-..+++- +..+|-....... |.++..-----|+..||++++++++=
T Consensus 180 a~~~~~~~v------d~VivGad~I~~n--G~lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 180 AVGAFMSRV------DKVLVGADAILAN--GALVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred HHHHHHHhC------CEEEECccceecC--CcEEeccchHHHHHHHHHhCCCEEEE
Confidence 233334331 1223333333333 55555544667888899999998875
No 449
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=45.47 E-value=54 Score=27.76 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEecccCCCC--eeeCCHHH----HHHHHHHHHHcCCeEEE
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG--GTVLPMQW----LRELKARCQEHNIPVHM 243 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g--G~~~~~~~----l~~i~~la~~~gi~li~ 243 (285)
..++++|++.+....... .++.+|+|.+.+--.. ..--..+. .++|.++|+++|+++|+
T Consensus 111 ~~~~~~i~~~i~~~~~~~-~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 111 SLTIDDIESKIRRLKREG-KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp S-BHHHHHHHHHHHHHHS-TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCHHHHHHHHHHHHhhc-cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 358889888886533222 4789999999765431 11122233 45788999999999998
No 450
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.44 E-value=36 Score=29.22 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=35.8
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
.+.-|++-.-+++. ...+.++.++.|++-|.++|+++++=.-
T Consensus 188 ~IdWVIvGGESG~~-ARp~~~~Wvr~irdqC~~~gvpFffKQw 229 (261)
T PF07505_consen 188 GIDWVIVGGESGPG-ARPMHPDWVRSIRDQCAAAGVPFFFKQW 229 (261)
T ss_pred CCCEEEECCCcCCC-CCcCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 56788888778776 7889999999999999999999987543
No 451
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=45.10 E-value=49 Score=28.07 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=28.1
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC-eEEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI-PVHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi-~li~Dea 246 (285)
++.+|.+ |.+.+.+.++.+.+.+++++. ++++|-+
T Consensus 73 ~~~ai~i--------G~l~~~~~~~~i~~~~~~~~~~~vv~DPv 108 (266)
T PRK06427 73 RIDAVKI--------GMLASAEIIETVAEALKRYPIPPVVLDPV 108 (266)
T ss_pred CCCEEEE--------CCcCCHHHHHHHHHHHHhCCCCCEEEcCc
Confidence 5677777 778888888899999888875 7888954
No 452
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=45.09 E-value=67 Score=23.61 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
.++++++++.+.+ .+-.|++-..+ . |.+-- .++..+++++.++-+++-
T Consensus 48 kl~~eEle~~lee-------~~E~ivvGTG~--~-G~l~l---~~ea~e~~r~k~~~vi~~ 95 (121)
T COG1504 48 KLALEELEELLEE-------GPEVIVVGTGQ--S-GMLEL---SEEAREFFRKKGCEVIEL 95 (121)
T ss_pred ccCHHHHHHHHhc-------CCcEEEEecCc--e-eEEEe---CHHHHHHHHhcCCeEEEe
Confidence 4899999999988 66677774433 3 56555 578888888988766653
No 453
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=45.03 E-value=96 Score=22.32 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=38.8
Q ss_pred ceeeeeeecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 171 RVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 171 g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
...++.+..+.. ...+.++++++. . +-|++|-|-.. +.+++++|.++++++|..+.+
T Consensus 62 ~~D~V~I~tp~~--~h~~~~~~~l~~-------g-~~v~~EKP~~~------~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 62 DVDAVIIATPPS--SHAEIAKKALEA-------G-KHVLVEKPLAL------TLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp TESEEEEESSGG--GHHHHHHHHHHT-------T-SEEEEESSSSS------SHHHHHHHHHHHHHHTSCEEE
T ss_pred cCCEEEEecCCc--chHHHHHHHHHc-------C-CEEEEEcCCcC------CHHHHHHHHHHHHHhCCEEEE
Confidence 344444444222 255677777765 2 37888888753 477799999999999998876
No 454
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=44.48 E-value=49 Score=27.49 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=29.4
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc-CCeEEEeCc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEH-NIPVHMDGA 246 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~-gi~li~Dea 246 (285)
+..+|.+ |.+.+.+.++.+.++++++ ++++++|-+
T Consensus 68 ~~~~i~~--------G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv 103 (242)
T cd01169 68 PVDAIKI--------GMLGSAEIIEAVAEALKDYPDIPVVLDPV 103 (242)
T ss_pred CCCEEEE--------CCCCCHHHHHHHHHHHHhCCCCcEEECCc
Confidence 5677777 7888888899999999987 899999965
No 455
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=43.94 E-value=41 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=16.8
Q ss_pred eeeCC-HHHHHHHHHHHHHcCCeEEEe
Q psy5413 219 GTVLP-MQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 219 G~~~~-~~~l~~i~~la~~~gi~li~D 244 (285)
|.+-. .+.++++++.|+++|+++=+=
T Consensus 110 GNig~~~~~v~~vv~~ak~~~ipIRIG 136 (360)
T PRK00366 110 GNIGKRDERVREVVEAAKDYGIPIRIG 136 (360)
T ss_pred CCCCchHHHHHHHHHHHHHCCCCEEEe
Confidence 44444 566777777777777776543
No 456
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=43.64 E-value=73 Score=26.84 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 181 KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 181 ~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
|+...+-+.+++..+. .|.+|++-...+ ...+.+.++.+.+|++++++|.
T Consensus 16 P~k~~~~~~~~~~~~~-------gtdai~vGGS~~------vt~~~~~~~v~~ik~~~lPvil 65 (232)
T PRK04169 16 PDKPLPDEALEAICES-------GTDAIIVGGSDG------VTEENVDELVKAIKEYDLPVIL 65 (232)
T ss_pred CCCCCCHHHHHHHHhc-------CCCEEEEcCCCc------cchHHHHHHHHHHhcCCCCEEE
Confidence 4444455666666655 678888844443 4467799999989999999997
No 457
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=43.17 E-value=37 Score=30.16 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=16.9
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
|.+-+.+.++++++.|+++|+++=+=
T Consensus 102 GNig~~e~v~~vv~~ak~~~ipIRIG 127 (346)
T TIGR00612 102 GNIGFRERVRDVVEKARDHGKAMRIG 127 (346)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEe
Confidence 44555666777777777777776443
No 458
>TIGR00506 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal.
Probab=42.48 E-value=50 Score=27.11 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=27.4
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+.++++|-.+. . |.+.+ .+++.++|++||++++.
T Consensus 157 ~p~~vicEil~~-d-G~m~~---~~~~~~fA~~~~l~~is 191 (199)
T TIGR00506 157 KPAGVICEMMND-D-GTMAR---KPELMEYAKKHNLKLIS 191 (199)
T ss_pred CceEEEEEEeCC-C-CCccC---HHHHHHHHHHcCCcEEE
Confidence 456777777654 4 89999 88888889999999863
No 459
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.31 E-value=1.6e+02 Score=26.38 Aligned_cols=73 Identities=15% Similarity=0.108 Sum_probs=40.7
Q ss_pred CCCHHHHHHHhcccccccCCceEEE----EEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEEeCc-cC--Ch-hhhc
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLV----CVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHMDGA-RL--PL-AEVC 254 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v----~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~Dea-~~--~~-~~~~ 254 (285)
..+.+..+++++. +-+-++.= .+|.+.-.+ |.-+| ..-+.+.++.++++|+++|.|+= +. .. ..+.
T Consensus 159 V~T~e~a~~Li~a----GAD~vKVGIGpGSiCtTr~vt-GvG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAla 233 (346)
T PRK05096 159 VVTGEMVEELILS----GADIVKVGIGPGSVCTTRVKT-GVGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFG 233 (346)
T ss_pred ccCHHHHHHHHHc----CCCEEEEcccCCccccCcccc-ccChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHHH
Confidence 4577888888865 11112100 123333333 44444 34577778888899999999965 33 11 2233
Q ss_pred ccCCeEE
Q psy5413 255 ASVDTVM 261 (285)
Q Consensus 255 ~~~dv~~ 261 (285)
.++|.+.
T Consensus 234 aGAd~VM 240 (346)
T PRK05096 234 GGADFVM 240 (346)
T ss_pred cCCCEEE
Confidence 4666553
No 460
>PLN02361 alpha-amylase
Probab=42.15 E-value=29 Score=31.86 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.++|+++++.||++|+-+|+|-+
T Consensus 74 t~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 74 SEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEc
Confidence 356799999999999999999998
No 461
>PLN03244 alpha-amylase; Provisional
Probab=41.11 E-value=34 Score=34.18 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
++++++++++.||++||-||+|-|+.
T Consensus 439 TPeDLK~LVD~aH~~GI~VILDvV~N 464 (872)
T PLN03244 439 TPDDFKRLVDEAHGLGLLVFLDIVHS 464 (872)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEecCc
Confidence 47789999999999999999999965
No 462
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=40.93 E-value=29 Score=33.21 Aligned_cols=26 Identities=15% Similarity=0.017 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
..++++++++.||++||-||+|-++-
T Consensus 158 ~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 158 GPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 35679999999999999999999954
No 463
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=40.41 E-value=74 Score=27.15 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=34.1
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeee----CCHHHHHHHHHHHHHcCCeEE
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV----LPMQWLRELKARCQEHNIPVH 242 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~----~~~~~l~~i~~la~~~gi~li 242 (285)
..+.|.+++.. ++...-.||+++-++| |.. .+.++..+|.++.+..|+.+|
T Consensus 17 ~W~~l~~a~~~----~p~~~f~vIiNP~sGP--G~~~~~~pd~~Y~~~i~~L~~~~nv~vl 71 (253)
T PF12138_consen 17 AWDPLYDAIAA----HPSVPFTVIINPNSGP--GSAPDPWPDANYAAAIPRLNSYANVRVL 71 (253)
T ss_pred chHHHHHHHhc----CCCCcEEEEEcCCCCC--CCCCCCCCCHHHHHHHHHHHhcCCCcEE
Confidence 46778777776 3334567777777777 544 778888888887555565544
No 464
>PRK12313 glycogen branching enzyme; Provisional
Probab=40.39 E-value=30 Score=33.84 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
++++++++++.||++||-||+|-|.-
T Consensus 218 t~~d~k~lv~~~H~~Gi~VilD~V~n 243 (633)
T PRK12313 218 TPEDFMYLVDALHQNGIGVILDWVPG 243 (633)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 46789999999999999999999944
No 465
>PRK01792 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=40.36 E-value=55 Score=27.18 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=27.1
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+.+|+++-.+. . |.+.+ ..++.++|++||++++.
T Consensus 167 ~p~~vicEil~~-d-G~ma~---~~~~~~fA~~~~l~~is 201 (214)
T PRK01792 167 KEAGVICEITND-D-GTMAR---TPEIVEFAKKFGYAVVT 201 (214)
T ss_pred CceEEEEEEecC-C-CCccC---HHHHHHHHHHcCCcEEE
Confidence 346777777654 4 88999 88888899999999864
No 466
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=40.19 E-value=76 Score=27.41 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=41.5
Q ss_pred ecCCCCCCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHc
Q psy5413 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237 (285)
Q Consensus 178 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~ 237 (285)
|.++ +.+|.+.+++.++...+. .+..|++...++. +..++.++.+++.+.+.+.
T Consensus 11 Pf~~-g~iD~~~~~~li~~l~~~---Gv~Gl~~~GstGE--~~~Lt~eEr~~l~~~~~~~ 64 (279)
T cd00953 11 PFTG-NKIDKEKFKKHCENLISK---GIDYVFVAGTTGL--GPSLSFQEKLELLKAYSDI 64 (279)
T ss_pred CcCC-CCcCHHHHHHHHHHHHHc---CCcEEEEcccCCC--cccCCHHHHHHHHHHHHHH
Confidence 4445 789999999887653222 6789999888887 6889999999998877664
No 467
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=39.92 E-value=1.1e+02 Score=22.39 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 188 ~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
+...++|... +.++|++..- .+....+++...|+.++++++..
T Consensus 31 ~~vlkalk~g------kaklViiA~D--------~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 31 KSTLKALRNG------KAKLVIISNN--------CPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred HHHHHHHHcC------CeeEEEEeCC--------CCHHHHHHHHHHHhhcCCCEEEe
Confidence 4455666542 7788888542 23344899999999999999864
No 468
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.45 E-value=87 Score=28.89 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=39.0
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccC--------CCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHN--------YCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n--------~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
.++|++.+.+++. ++.++++++.|. ..|+...-++--.+|.++||+.|+++++=.
T Consensus 155 t~~e~I~~~l~~~------~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 155 TNLEDIIAELEQE------KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred cCHHHHHHHHHhc------CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4899999999773 778888887552 222222334556788999999999988743
No 469
>PRK00910 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=39.44 E-value=58 Score=27.13 Aligned_cols=35 Identities=31% Similarity=0.257 Sum_probs=27.2
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+.+++++-.+. . |.+.. +.++.++|++||++++.
T Consensus 168 ~p~~vicEil~~-d-G~ma~---~~~l~~fA~~h~l~~is 202 (218)
T PRK00910 168 QPAGVLCELTNP-D-GTMAK---TPEIIAFGKLHNMPVLT 202 (218)
T ss_pred CceEEEEEEecC-C-CCcCC---HHHHHHHHHHcCCcEEE
Confidence 356777777554 4 89999 88888899999999853
No 470
>PRK11096 ansB L-asparaginase II; Provisional
Probab=39.41 E-value=1.2e+02 Score=27.17 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=32.2
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.|.+.++..++. ..+.|+++..-+ |.+ +.+.++.|.+ +.+.|++|++
T Consensus 244 ~~~~~l~~~l~~-------~~~GiVl~g~G~---Gn~-~~~~~~~l~~-a~~~GipVV~ 290 (347)
T PRK11096 244 ASDLPAKALVDA-------GYDGIVSAGVGN---GNL-YKTVFDTLAT-AAKNGVAVVR 290 (347)
T ss_pred CCHHHHHHHHhc-------cCCEEEEEeECC---CCC-CHHHHHHHHH-HHHCCCEEEE
Confidence 577788888866 678888887443 554 5666666665 6667877654
No 471
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=39.26 E-value=82 Score=28.31 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=30.1
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecc-cCCCCeee--CCHHHHHHHHHHHHHcCC
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENT-HNYCGGTV--LPMQWLRELKARCQEHNI 239 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~-~n~~gG~~--~~~~~l~~i~~la~~~gi 239 (285)
++++++.+++. ..-+|++-.. .+.. +.- ++.+++++.+++||++|.
T Consensus 15 ~l~~l~~ai~~-------GADaVY~G~~~~~~R-~~a~nfs~~~l~e~i~~ah~~gk 63 (347)
T COG0826 15 NLEDLKAAIAA-------GADAVYIGEKEFGLR-RRALNFSVEDLAEAVELAHSAGK 63 (347)
T ss_pred CHHHHHHHHHc-------CCCEEEeCCcccccc-cccccCCHHHHHHHHHHHHHcCC
Confidence 67778888766 3456666543 3332 233 667778888888888877
No 472
>PRK12616 pyridoxal kinase; Reviewed
Probab=39.23 E-value=67 Score=27.50 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=27.5
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCC-eEEEeCcc
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI-PVHMDGAR 247 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi-~li~Dea~ 247 (285)
++++|.+ |.+.+.+.++.+.+..++++. .+++|-+-
T Consensus 74 ~~~aiki--------G~l~s~~~i~~i~~~l~~~~~~~vV~DPV~ 110 (270)
T PRK12616 74 GVDAMKT--------GMLPTVDIIELAADTIKEKQLKNVVIDPVM 110 (270)
T ss_pred CCCEEEE--------CCCCCHHHHHHHHHHHHhcCCCCEEEccce
Confidence 5677777 888888888888888888764 57888773
No 473
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=39.14 E-value=45 Score=26.58 Aligned_cols=50 Identities=20% Similarity=0.344 Sum_probs=33.7
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
.++.++++++. .+.+|.+-..... .-.-.+..+++.++|+++++.+++++
T Consensus 14 ~~~~l~~~~~~-------gv~~v~lR~k~~~---~~~~~~~a~~l~~~~~~~~~~liin~ 63 (180)
T PF02581_consen 14 FLEQLEAALAA-------GVDLVQLREKDLS---DEELLELARRLAELCQKYGVPLIIND 63 (180)
T ss_dssp HHHHHHHHHHT-------T-SEEEEE-SSS----HHHHHHHHHHHHHHHHHTTGCEEEES
T ss_pred HHHHHHHHHHC-------CCcEEEEcCCCCC---ccHHHHHHHHHHHHhhcceEEEEecC
Confidence 45677777876 6778888776532 22223458889999999998888875
No 474
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=38.49 E-value=97 Score=22.96 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=30.6
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
+.+.+.+.|++..+ .+++++.+..... ..-.| +++.+.|+++++++|.
T Consensus 57 ~~~~~~~~i~~L~~---~~~agL~i~~~~~---~~~iP----~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 57 DEEELREFIRELAE---KGAAGLGIKTGRY---LDEIP----EEIIELADELGLPLIE 104 (123)
T ss_pred CHHHHHHHHHHHHH---CCCeEEEEeccCc---cccCC----HHHHHHHHHcCCCEEE
Confidence 34445555543211 1677888755432 33555 8889999999999986
No 475
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=37.94 E-value=1e+02 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=32.9
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
+|.+.++.+++. ..+.|+++..-. |.+.+ +.++.|.+ +.+.|++|++
T Consensus 221 ~~~~~l~~~~~~-------g~~GiVl~~~G~---Gn~p~-~~~~~l~~-a~~~gi~VV~ 267 (323)
T cd00411 221 ISAEAVRAFLRA-------GYKGIVLAGYGA---GNVPT-DLIDELEE-AAERGVVVVN 267 (323)
T ss_pred CCHHHHHHHHhC-------CCCEEEEEeECC---CCCCH-HHHHHHHH-HHHCCCEEEE
Confidence 577888888866 678999988554 66654 55666666 5567877655
No 476
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=37.93 E-value=65 Score=29.99 Aligned_cols=28 Identities=11% Similarity=0.237 Sum_probs=25.0
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
|.+.+.+.+..+.+.++++|+.+++|-+
T Consensus 78 G~l~~~e~~~~i~~~~k~~g~~vv~DPv 105 (448)
T PRK08573 78 GMLSNREIIEAVAKTVSKYGFPLVVDPV 105 (448)
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEcCc
Confidence 7777888999999999999999999964
No 477
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=37.76 E-value=49 Score=27.06 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=26.7
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
++.+|+++-.+. . |.+.+ .+++.++|++||++++.
T Consensus 152 ~p~avi~eil~~-d-G~~~~---~~~~~~fA~~~~l~~vs 186 (194)
T PF00926_consen 152 SPVAVICEILDD-D-GDMAR---RDELEEFAKKHGLPIVS 186 (194)
T ss_dssp -SBEEEEEBBET-T-SSBHC---HHHHHHHHHHTT-EEEE
T ss_pred CCcEEEEEEeCC-C-CCcCC---HHHHHHHHHHcCCcEEE
Confidence 567888877755 5 89999 88888889999999874
No 478
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.63 E-value=36 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea 246 (285)
+.++++++++.||++||-||+|-+
T Consensus 290 t~~dfk~Lv~~aH~~Gi~VilD~V 313 (683)
T PRK09505 290 TEADLRTLVDEAHQRGIRILFDVV 313 (683)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 457899999999999999999998
No 479
>PRK05402 glycogen branching enzyme; Provisional
Probab=37.48 E-value=36 Score=33.89 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 222 LPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 222 ~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
-+.++++++++.||++||-||+|-+.-
T Consensus 312 Gt~~dfk~lV~~~H~~Gi~VilD~V~N 338 (726)
T PRK05402 312 GTPDDFRYFVDACHQAGIGVILDWVPA 338 (726)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 346789999999999999999999844
No 480
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=37.09 E-value=36 Score=33.12 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
++++++++++.||++||-||+|-++-
T Consensus 204 t~~dlk~lV~~~H~~Gi~VilD~V~N 229 (613)
T TIGR01515 204 TPDDFMYFVDACHQAGIGVILDWVPG 229 (613)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 35689999999999999999999944
No 481
>TIGR03586 PseI pseudaminic acid synthase.
Probab=37.05 E-value=91 Score=27.76 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=49.6
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeE-EEeCccC-----ChhhhcccCCe
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV-HMDGARL-----PLAEVCASVDT 259 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~l-i~Dea~~-----~~~~~~~~~dv 259 (285)
++++++.+++.-.+.+ +..++++..+++.. .....-+|..|..+.+++++++ ++| |+ .+.....++++
T Consensus 145 t~~Ei~~Av~~i~~~g--~~~i~LlhC~s~YP--~~~~~~nL~~i~~lk~~f~~pVG~SD--Ht~G~~~~~aAva~GA~i 218 (327)
T TIGR03586 145 TLEEIQEAVEACREAG--CKDLVLLKCTSSYP--APLEDANLRTIPDLAERFNVPVGLSD--HTLGILAPVAAVALGACV 218 (327)
T ss_pred CHHHHHHHHHHHHHCC--CCcEEEEecCCCCC--CCcccCCHHHHHHHHHHhCCCEEeeC--CCCchHHHHHHHHcCCCE
Confidence 6777777664422222 23455555554431 2222234889988888899999 788 55 33344568888
Q ss_pred E--EEecccccCcc
Q psy5413 260 V--MFCLSKGLGAP 271 (285)
Q Consensus 260 ~--~~s~sK~l~~p 271 (285)
+ -+++.|.+.||
T Consensus 219 IEkH~tld~~l~G~ 232 (327)
T TIGR03586 219 IEKHFTLDRSDGGV 232 (327)
T ss_pred EEeCCChhhcCCCC
Confidence 7 68888988664
No 482
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=36.15 E-value=51 Score=27.49 Aligned_cols=50 Identities=14% Similarity=0.026 Sum_probs=33.0
Q ss_pred CHHHHHHHhcccccccCCc-eEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 186 DLDEMEAKFSTADNIHCAS-TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~-~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
.++.+++++.. . +.+|.+--.+.+. -.. .+..+++.++|+++|+.+|+++
T Consensus 28 ~~~~l~~al~~-------G~v~~vQlR~K~l~~-~~~--~~~a~~l~~l~~~~gv~liINd 78 (221)
T PRK06512 28 LAKLLRAALQG-------GDVASVILPQYGLDE-ATF--QKQAEKLVPVIQEAGAAALIAG 78 (221)
T ss_pred HHHHHHHHHcC-------CCccEEEEeCCCCCH-HHH--HHHHHHHHHHHHHhCCEEEEeC
Confidence 35677777766 5 5777775444221 111 2336889999999999999964
No 483
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=35.93 E-value=35 Score=27.28 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=37.0
Q ss_pred CCCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 184 ~~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
..|...|.++++. -.| .+| |...+.+.++.|.++.++.|+.++.|.=+.
T Consensus 11 K~D~~~lk~~~d~---------~~I----~T~---Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~ 59 (174)
T TIGR00334 11 KDDQARIKQAFDV---------DVI----ETN---GSALKDETINLIKKAQKKQGVIILTDPDFP 59 (174)
T ss_pred chHHHHHHHhcCc---------eEE----EEC---CCccCHHHHHHHHHHhhcCCEEEEeCCCCc
Confidence 3477888777742 122 122 677788999999999999999999998866
No 484
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=35.75 E-value=36 Score=33.04 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 224 MQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 224 ~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
.++++++++.||++||-||+|-++-
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV~N 252 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVVYN 252 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEcC
Confidence 3789999999999999999999954
No 485
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=35.68 E-value=28 Score=30.95 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.0
Q ss_pred eCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 221 VLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 221 ~~~~~~l~~i~~la~~~gi~li~D 244 (285)
.++.+++++|++.|+++||-||--
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCceeee
Confidence 999999999999999999987754
No 486
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=35.11 E-value=41 Score=25.56 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=28.9
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeC-----C----HHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL-----P----MQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~-----~----~~~l~~i~~la~~~gi~li~Dea 246 (285)
|++-+.+.+.+. .+..++|..|-| |.-+ + .++.++|.++|+++|+ =++|-.
T Consensus 37 Dl~l~L~~~k~~------g~~~lfVi~PvN---g~wydytG~~~~~r~~~y~kI~~~~~~~gf-~v~D~s 96 (130)
T PF04914_consen 37 DLQLLLDVCKEL------GIDVLFVIQPVN---GKWYDYTGLSKEMRQEYYKKIKYQLKSQGF-NVADFS 96 (130)
T ss_dssp HHHHHHHHHHHT------T-EEEEEE-------HHHHHHTT--HHHHHHHHHHHHHHHHTTT---EEE-T
T ss_pred HHHHHHHHHHHc------CCceEEEecCCc---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEecc
Confidence 666677777663 566666666555 4332 2 2567889999999999 677755
No 487
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=35.07 E-value=42 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=37.8
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCC---ee-----------eCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG---GT-----------VLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g---G~-----------~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
-|+..+.+.++...+ -.+.+|.+.+++.... |. .-+.++++++++.||++|+-||+|-+
T Consensus 24 G~~~gi~~~l~yl~~---lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKK---LGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHH---cCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 366666665533111 1456777777543210 11 11347799999999999999999988
No 488
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=35.00 E-value=1.4e+02 Score=21.62 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=31.5
Q ss_pred HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 187 ~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
.+.+++.|... +.++|++..-. +++.-+++...|+.++++++.-.
T Consensus 22 ~~~v~~aik~g------k~~lVI~A~D~--------s~~~kkki~~~~~~~~vp~~~~~ 66 (104)
T PRK05583 22 YNKCEEAIKKK------KVYLIIISNDI--------SENSKNKFKNYCNKYNIPYIEGY 66 (104)
T ss_pred HHHHHHHHHcC------CceEEEEeCCC--------CHhHHHHHHHHHHHcCCCEEEec
Confidence 35677777652 67888885433 23448999999999999986553
No 489
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.97 E-value=78 Score=27.57 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=36.4
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
-.+.++.+|.+ ++.+|++.++.... +....+-+++.||+||.=+...
T Consensus 80 Q~~~i~~~ia~-------~~daIiv~~~d~~~---------~~~~v~~a~~aGIpVv~~d~~~ 126 (322)
T COG1879 80 QIAQIEDLIAQ-------GVDAIIINPVDPDA---------LTPAVKKAKAAGIPVVTVDSDI 126 (322)
T ss_pred HHHHHHHHHHc-------CCCEEEEcCCChhh---------hHHHHHHHHHCCCcEEEEecCC
Confidence 45678888877 78899987766554 7888888999999999876644
No 490
>PRK00014 ribB 3,4-dihydroxy-2-butanone 4-phosphate synthase; Provisional
Probab=34.81 E-value=76 Score=26.66 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=26.7
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEE
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+.+|+++-.+ .. |.+.. ++++.++|++||+.++.
T Consensus 172 ~P~~vicEil~-~d-G~ma~---~~~l~~fA~~~~l~iis 206 (230)
T PRK00014 172 RPAGVLCELMN-AD-GTMMR---GASLERYAAKEGLVALA 206 (230)
T ss_pred CceEEEEEEeC-CC-CCccC---HHHHHHHHHHcCCcEEE
Confidence 34677777644 44 88999 88888899999999853
No 491
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=34.80 E-value=40 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.8
Q ss_pred eeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 219 GTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 219 G~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
+-.++.+++++|.+.|+++||-||--
T Consensus 66 ~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 66 GGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 56899999999999999999987653
No 492
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=34.70 E-value=58 Score=22.33 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=29.8
Q ss_pred HHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCeE
Q psy5413 103 CKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEI 144 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~v 144 (285)
..+|++.+.+.+|.+..+.+.|+..--...+..++..+|+-+
T Consensus 22 ~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rgKfi 63 (78)
T PF10678_consen 22 KEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERGKFI 63 (78)
T ss_pred HHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcCCEe
Confidence 678999999999999999888775444444444444566633
No 493
>PRK07714 hypothetical protein; Provisional
Probab=34.41 E-value=1.4e+02 Score=21.32 Aligned_cols=45 Identities=11% Similarity=0.244 Sum_probs=31.1
Q ss_pred HHHHHHHhcccccccCCceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEeC
Q psy5413 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245 (285)
Q Consensus 187 ~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~De 245 (285)
.+.+++++... +.++|++..-. ++...+++...|..++++++.-.
T Consensus 23 ~~~v~~al~~g------~~~lViiA~D~--------s~~~~~ki~~~~~~~~vp~~~~~ 67 (100)
T PRK07714 23 EELVLKEVRSG------KAKLVLLSEDA--------SVNTTKKITDKCTYYNVPMRKVE 67 (100)
T ss_pred HHHHHHHHHhC------CceEEEEeCCC--------CHHHHHHHHHHHHhcCCCEEEeC
Confidence 35667777652 66788875433 23348899999999999987543
No 494
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=34.34 E-value=64 Score=22.03 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=30.5
Q ss_pred HHHHHHHHHhHcCCCcEEEcCChHHHHHHHHHHccccCCCe
Q psy5413 103 CKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSE 143 (285)
Q Consensus 103 ~~~l~~~la~~~g~~~~~~~~~Gs~a~~~al~~~~~~~g~~ 143 (285)
..+|++.|.+.+|.+..+.+.|+..--...+..++.++|+.
T Consensus 20 ~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kgKf 60 (77)
T TIGR03853 20 RESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKGKF 60 (77)
T ss_pred HHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCCCE
Confidence 67799999999999999988887655444555555456763
No 495
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=34.06 E-value=45 Score=33.02 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
+.++++++++.||++||-||+|-|+-
T Consensus 243 ~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 243 QVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 45679999999999999999999944
No 496
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=33.98 E-value=1e+02 Score=27.52 Aligned_cols=48 Identities=17% Similarity=0.164 Sum_probs=32.9
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCCeeeCC-HHHHHHHHHHHHHcCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLP-MQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~gG~~~~-~~~l~~i~~la~~~gi~li~ 243 (285)
+|.+.|+.+++. ..+.|+++..-. |.+.+ ++.++.|.+ +.+.|++|+.
T Consensus 221 ~~~~~l~~~~~~-------~~~GiVl~~~G~---Gn~p~~~~~~~~l~~-~~~~Gi~VV~ 269 (335)
T PRK09461 221 ISAEVVRNFLRQ-------PVKALILRSYGV---GNAPQNPALLQELKE-ASERGIVVVN 269 (335)
T ss_pred CCHHHHHHHHhC-------CCCEEEEccCCC---CCCCCCHHHHHHHHH-HHHCCCEEEE
Confidence 577888888866 678999988443 55554 556666665 5567877654
No 497
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=33.82 E-value=46 Score=31.99 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred CHHHHHHHhcccccccCCceEEEEEecccCCC---Cee-----------eCCHHHHHHHHHHHHHcCCeEEEeCc
Q psy5413 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYC---GGT-----------VLPMQWLRELKARCQEHNIPVHMDGA 246 (285)
Q Consensus 186 d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~---gG~-----------~~~~~~l~~i~~la~~~gi~li~Dea 246 (285)
|++.+.+.++.-.+ -.+.+|.+.++.... +|. .-+.++++++++.||++|+-||+|-+
T Consensus 31 dl~gi~~~ldyl~~---lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQK---LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CHHHHHHhhHHHHh---CCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 67666666543211 146677777754211 011 11346799999999999999999999
No 498
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=33.81 E-value=89 Score=28.38 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCHHHHHHHhcccccccCCceEEEEEecccCCCC-------eee-CCHHHHHHHHHHHHHcCCeEEE
Q psy5413 185 FDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG-------GTV-LPMQWLRELKARCQEHNIPVHM 243 (285)
Q Consensus 185 ~d~~~l~~~i~~~~~~~~~~~~~v~i~~~~n~~g-------G~~-~~~~~l~~i~~la~~~gi~li~ 243 (285)
.+++.+.+.+++. ++++|++++.+.... |.. .-.+.+.+|.++++++|+.+++
T Consensus 145 ~~le~I~~~i~~~------~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvil 205 (372)
T cd01121 145 TNLEDILASIEEL------KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFI 205 (372)
T ss_pred CcHHHHHHHHHhc------CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3788888888652 678999999764310 111 1123456788999999987754
No 499
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=33.61 E-value=44 Score=33.33 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCeEEEeCccC
Q psy5413 223 PMQWLRELKARCQEHNIPVHMDGARL 248 (285)
Q Consensus 223 ~~~~l~~i~~la~~~gi~li~Dea~~ 248 (285)
++++++++++.||++||-||+|-++.
T Consensus 298 tp~dlk~LVd~aH~~GI~VilDvV~n 323 (758)
T PLN02447 298 TPEDLKYLIDKAHSLGLRVLMDVVHS 323 (758)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 46889999999999999999999955
No 500
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=33.60 E-value=1e+02 Score=23.51 Aligned_cols=37 Identities=8% Similarity=-0.100 Sum_probs=22.5
Q ss_pred ceEEEEEecccCCCCeeeCCHHHHHHHHHHHHHcCCeEEEe
Q psy5413 204 STSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244 (285)
Q Consensus 204 ~~~~v~i~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D 244 (285)
+.+.+++.++ . ...+..+.-+.+.++|+++.-..++|
T Consensus 79 ~~~ivlv~~~-~---~~~~~~~~n~~~~~~a~~~~~v~~id 115 (150)
T cd01840 79 DRQVYLVNPH-V---PRPWEPDVNAYLLDAAKKYKNVTIID 115 (150)
T ss_pred CCEEEEEECC-C---CcchHHHHHHHHHHHHHHCCCcEEec
Confidence 4566666554 2 33344555667888899993344555
Done!