RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5413
(285 letters)
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 305 bits (784), Expect = e-104
Identities = 102/226 (45%), Positives = 140/226 (61%), Gaps = 18/226 (7%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
+D+RSDT++KPT EM+ M EVGDDVY EDPT EL+ AA+ GKEAA+FVPSGTMG
Sbjct: 6 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 65
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
N ++IM H R D E+I+ SHI +E G + + V+ V + +G D D
Sbjct: 66 NQVSIMAHTQRGD-EVILEADSHIFWYEVGAM------AVLSGVMPHPVPGK-NGAMDPD 117
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
++ NIH TSL+ +ENTHN GG V+P++ ++E+ +EH I VH+DGAR+
Sbjct: 118 DVRKAIR-PRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 176
Query: 249 ---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
P+ E D+VMFCLSKGL APVGS++ G +FI++
Sbjct: 177 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIER 222
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 298 bits (764), Expect = e-101
Identities = 55/240 (22%), Positives = 87/240 (36%), Gaps = 34/240 (14%)
Query: 64 VNIRTVDIRSDTISKPT--------MEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAG 115
+N + T ++ E+ D Y + ++K A + G
Sbjct: 2 MNRLRTSFQQTTGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG 61
Query: 116 KEAAIFVPSGTMGNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLM 174
+ A+F PSGTM +A+ D D + H+ + EQ G ++ +
Sbjct: 62 MDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGL------KELHPIET 115
Query: 175 RGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARC 234
V D LDE++ + + +E GG L + C
Sbjct: 116 ILVGA-ADRLMTLDEIK---------ALPDIACLLLELPQREIGGVAPAFSELETISRYC 165
Query: 235 QEHNIPVHMDGARL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
+E I +H+DGARL AE+ D++ KGLG G+ILAGP F Q
Sbjct: 166 RERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQT 225
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 291 bits (748), Expect = 3e-98
Identities = 55/228 (24%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
R+ + ++ + + D+Y ++ + K AK+ GK++A+F PSGTM
Sbjct: 19 GNGPRNVGVLTEALQN----IDDNLESDIYGNGAVIEDFETKIAKILGKQSAVFFPSGTM 74
Query: 128 GNLIAIMTHCDRRD-SEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
IA+ DR++ + SH+ + EQ G ++ ++ + +
Sbjct: 75 AQQIALRIWADRKENRRVAYHPLSHLEIHEQDGL------KELQQITPLLLGT-ANQLLT 127
Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
+D++++ S V +E GG + + L ++ C E I +H+DGA
Sbjct: 128 IDDIKS--------LREPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGA 179
Query: 247 RL---------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
RL E+CA D+V KG+G G+ILAG ++F+Q+
Sbjct: 180 RLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQE 227
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 230 bits (589), Expect = 2e-74
Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 21/230 (9%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKEAAIF-VPSGT 126
+ SD I+ + E+ + G Y D +++ K ++ ++ +F VP+GT
Sbjct: 10 LGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGT 69
Query: 127 MGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFD 186
N + + I SHI E G +S +++ + D
Sbjct: 70 AANALCLSAMT-PPWGNIYCHPASHINNDECGAPE---FFSNGAKLM---TVDGPAAKLD 122
Query: 187 LDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
+ + + +T CV T G++ + + + C+ ++ +HMDG+
Sbjct: 123 IVRLRERTR-EKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 181
Query: 247 RL---------PLAEV--CASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
R AE+ A VD + F +K +I+ +
Sbjct: 182 RFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 231
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 222 bits (567), Expect = 4e-71
Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 25/231 (10%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDV-YLEDPTCKELQEKAAKLAGKEAA--IFVPSG 125
+D ++ + M + Y +D C + +L + A F+ G
Sbjct: 16 YSFVNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGG 75
Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
T NLIA R +I HI E G T +V+ DG
Sbjct: 76 TQTNLIACSLAL-RPWEAVIATQLGHISTHETGAIEATG-----HKVV---TAPCPDGKL 126
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
+ ++E+ + H LV + NT GT Q L ++ A C+EH + + +DG
Sbjct: 127 RVADIESALHENRSEHMVIPKLVYISNTTEV--GTQYTKQELEDISASCKEHGLYLFLDG 184
Query: 246 ARL-----------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
ARL LA++ D +K G +++ +
Sbjct: 185 ARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPN 235
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 214 bits (545), Expect = 1e-66
Identities = 47/247 (19%), Positives = 82/247 (33%), Gaps = 37/247 (14%)
Query: 68 TVDIRSDTISKPTME-MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
+D+ +D+ + + M+ M GD+ Y + L E + G + I G
Sbjct: 43 FIDLLTDSGTGAVTQSMQAAMM---RGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGR 99
Query: 127 MGNLIAIMTHCDRRDSEIIVGDC-----SHIMLWEQGGASQ----TSVYSQIGRVLMRGV 177
I I +R+ E + S+ G SQ T I GV
Sbjct: 100 GAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGV 159
Query: 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237
G FDL+ +E + + + + T N GG + + L+ + + +++
Sbjct: 160 RYDFKGNFDLEGLERGI---EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKY 216
Query: 238 NIPVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSIL 276
+IPV MD AR E D + K P+G +L
Sbjct: 217 DIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLL 276
Query: 277 AGPEEFI 283
++
Sbjct: 277 CMKDDSF 283
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 149 bits (378), Expect = 3e-42
Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 37/249 (14%)
Query: 68 TVDIRSDTISKPTMEMKNYMFNC-EVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
+D+ +D+ T M ++ + GD+ Y +L++KA +L + I G
Sbjct: 45 YIDLLTDSG---TNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGR 101
Query: 127 MGNLIAIMTHCDRRDSEIIV--GDCSHIMLWEQGGASQ-----TSVYSQIGRVLMRGVTN 179
I + E ++ A ++ + +
Sbjct: 102 GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYD 161
Query: 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
G FD+ +++ + + T N GG + M L+E+ ++H I
Sbjct: 162 DWKGDFDIKKLKENI---AQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGI 218
Query: 240 PVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILA- 277
V MD AR + ++ D + K +G ++A
Sbjct: 219 FVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAI 278
Query: 278 -GPEEFIQK 285
EE
Sbjct: 279 RDNEEIFTL 287
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 137 bits (347), Expect = 8e-38
Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 31/239 (12%)
Query: 68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
+D+ +D+ + + + +GD+ Y L+ +L G + + G
Sbjct: 44 YIDLLTDSGTNAMSDKQ--WAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRG 101
Query: 128 GNLIAIMTHCDRRDSEIIVGD--CSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
+ + + + E+ GA V G+ G
Sbjct: 102 AENLLSQLAI-KPGQYVAGNMYFTTTRYHQEKNGA--VFVDIVRDEAHDAGLNIAFKGDI 158
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
DL +++ D + + +C+ T N GG + M +R ++ + H I V D
Sbjct: 159 DLKKLQKL---IDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDA 215
Query: 246 ARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFI 283
R + E+ + D K +G L ++ +
Sbjct: 216 TRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEM 274
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 67.4 bits (165), Expect = 4e-13
Identities = 27/208 (12%), Positives = 65/208 (31%), Gaps = 30/208 (14%)
Query: 89 NCEVGDDVYLEDPTC-KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVG 147
C G ++ P + + K G + A + + + +++
Sbjct: 41 FCTTGRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDA-WVVMD 99
Query: 148 DCSH---IMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCAS 204
+ H + E+ G + V T+ D + +
Sbjct: 100 ENCHYSSYVAAERAGLNIALVP----------KTDYPDYAITPENFAQTIE--ETKKRGE 147
Query: 205 TSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA----RLPLAEVCASVDTV 260
L + G + ++++ C E+++P+ ++GA R+P++ D
Sbjct: 148 VVLALITYPDGNY-GNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGAD-- 201
Query: 261 MFCLS--KGLGAP-VGSILAGPEEFIQK 285
S K + A ++ EE+ +
Sbjct: 202 FIVGSGHKSMAASGPIGVMGMKEEWAEI 229
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 49.3 bits (117), Expect = 5e-07
Identities = 30/193 (15%), Positives = 60/193 (31%), Gaps = 33/193 (17%)
Query: 98 LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDS--EIIVGDCSHIMLW 155
+ T K L+ +L AI P T ++ ++ ++ +I SH
Sbjct: 131 MYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH---- 186
Query: 156 EQGGASQTSV-----YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCV 210
S + + L+ V + ++++E I + V +
Sbjct: 187 -------KSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAI--KKEIELGNRPCV-L 236
Query: 211 ENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCA---------SVDTVM 261
+ + E+ C+ ++IP ++GA VD V+
Sbjct: 237 STLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVV 293
Query: 262 FCLSKGLGAPVGS 274
K L P+G
Sbjct: 294 SSSDKNLLTPIGG 306
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 44.8 bits (106), Expect = 2e-05
Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 34/189 (17%)
Query: 105 ELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTS 164
E K + + + L I+ ++ L E G
Sbjct: 65 EYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKV---------IHYLPELPGHPSIE 115
Query: 165 VYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPM 224
+I + + E+ K + T ++ +T + V+ +
Sbjct: 116 RSCKIVNA---KYFE----SDKVGEILNKID--KD-----TLVIITGSTMDL---KVIEL 158
Query: 225 QWLRELKARCQEHNIPVHMD---GARLPLAE-----VCASVDTVMFCLSKGLGAPVGSIL 276
+ +++ + V +D GAR+ L + D V+ K + P G +L
Sbjct: 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLL 218
Query: 277 AGPEEFIQK 285
AG +E + K
Sbjct: 219 AGKKELVDK 227
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 42.0 bits (98), Expect = 2e-04
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 19/150 (12%)
Query: 104 KELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDC--SHIMLWEQGGA 160
E ++ AA++ G + + V G + N + D ++ +C S GA
Sbjct: 208 GESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGA 267
Query: 161 S------QTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214
+ Y IG + + + + L + ++ + S V N
Sbjct: 268 KPVYMVPSRNRYGIIGPIYPQEMQPE-----TLQKKISESPLTKDKAGQKPSYCVVTNCT 322
Query: 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
G +E + ++ + +H D
Sbjct: 323 YD--GVCYN---AKEAQDLLEKTSDRLHFD 347
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 39.1 bits (92), Expect = 0.001
Identities = 46/203 (22%), Positives = 72/203 (35%), Gaps = 57/203 (28%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQ 162
EL+EK + GKEAAI +G NL + R D I+ D H AS
Sbjct: 91 VELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRND--YILLDERDH--------AS- 139
Query: 163 TSVYSQIGRVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
++ G +++++ AK S S L+C +
Sbjct: 140 ----------IIDGSRLSFSKVIKYGHNNMEDLRAKLSRLPE---DSAKLICTD------ 180
Query: 218 G-----GTVLPMQWLRELKARCQEHNIPVHMD--------GAR----LPLAEVCASVDTV 260
G G ++ L EL + E + V +D G + + VD +
Sbjct: 181 GIFSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLI 237
Query: 261 MFCLSKGLGAPVGSILAGPEEFI 283
M SK L + +G +AG + I
Sbjct: 238 MGTFSKSLAS-LGGFVAGDADVI 259
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 38.7 bits (91), Expect = 0.001
Identities = 24/153 (15%), Positives = 48/153 (31%), Gaps = 40/153 (26%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRD------SEIIVGDCSHIML 154
K+ + + AK G + A+ V SG+ NL+ I + EIIV S
Sbjct: 34 EYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWS-- 91
Query: 155 WEQGGASQTSVYSQIGRVLMRGVT------NQKDGTFDLDEMEAKFSTADNIHCASTSLV 208
T+ Y + G+ + D++ ++ + ST +
Sbjct: 92 --------TTYYP----LQQYGLRVKFVDIDINTLNIDIESLKEAVTD-------STKAI 132
Query: 209 CVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
+ G + ++ +I +
Sbjct: 133 LT--VNLL--GNPNNFDEINKI---IGGRDIIL 158
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 38.5 bits (89), Expect = 0.002
Identities = 40/194 (20%), Positives = 65/194 (33%), Gaps = 32/194 (16%)
Query: 109 KAAKLAGKEAAIFVPSGTMGNLIAIMT---HCDRRDSEIIVGDCSHIMLWEQGGASQTSV 165
K A + + VP T +L H + II ++ V
Sbjct: 109 KLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQ------KSCFKSMV 162
Query: 166 YSQIGRVLMRGVTNQKDGTFDLDEMEAKFST--ADNIHCASTSLVCVENTHNYCGGTVLP 223
+ V++ V + DL +EAK ++I +C+ +T C +P
Sbjct: 163 TAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHI-------LCLHSTTA-CFAPRVP 214
Query: 224 MQWLRELKARCQEHNIPVHMDGA----------RLPLAEVCASVDTVMFCLSKGLGAPVG 273
+ L EL C ++IP ++ A + +D + L K PVG
Sbjct: 215 DR-LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVG 273
Query: 274 S--ILAGPEEFIQK 285
I E FIQ
Sbjct: 274 GAIIAGFNEPFIQD 287
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 37.9 bits (89), Expect = 0.003
Identities = 41/203 (20%), Positives = 66/203 (32%), Gaps = 54/203 (26%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQ 162
KEL++ ++ G + I S N T D I+ D +H AS
Sbjct: 91 KELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPED--AIISDELNH--------AS- 139
Query: 163 TSVYSQIGRVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
++ G+ K + + ++EAK AD A L+ +
Sbjct: 140 ----------IIDGIRLCKAQRYRYKNNAMGDLEAKLKEADE-KGARFKLIATD------ 182
Query: 218 G-----GTVLPMQWLRELKARCQEHNIPVHMD--------GAR----LPLAEVCASVDTV 260
G G + L+ + ++N V +D G V VD +
Sbjct: 183 GVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDIL 239
Query: 261 MFCLSKGLGAPVGSILAGPEEFI 283
L K LG G +G +E I
Sbjct: 240 TGTLGKALGGASGGYTSGHKEII 262
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 37.7 bits (87), Expect = 0.004
Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 27/184 (14%)
Query: 104 KELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDC--SHIMLWEQGGA 160
KE ++ A++ + + V +G + N I M + +I +C S L
Sbjct: 198 KEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDV 257
Query: 161 SQTSVYSQI-GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGG 219
+ ++ G+ + + + + N+ Y G
Sbjct: 258 TPIYFRPTRNAYGILGGIPQS-----EFQHATIAKRVKETPNATWPVHAVITNS-TYDGL 311
Query: 220 TVLPMQWLRELKARCQEHNIPV---HMDGAR----------LPLAEVCASVDTVMFCLSK 266
+K +I + + V V K
Sbjct: 312 LYN----TDFIKKTLDVKSIHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHK 367
Query: 267 GLGA 270
L A
Sbjct: 368 LLAA 371
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 37.1 bits (86), Expect = 0.005
Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 29/202 (14%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
+ + +GT A+ + D+ + + + L + G
Sbjct: 77 DSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGM 136
Query: 161 SQTSVYSQIGRVLMR-GVT----NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHN 215
S+ L GV + KDG D++ ++ + D+ L+ ++ +
Sbjct: 137 D----DSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDS-----IKLIHIQRSTG 187
Query: 216 YCGGTVLPMQWLREL--KARCQEHNIPVHMD-------GARLPLAEVCASVDTVMFCLSK 266
Y L + + E+ R N+ V +D + P D + L K
Sbjct: 188 YGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTD---VGADIIAGSLIK 244
Query: 267 GLG---APVGSILAGPEEFIQK 285
+G A G +AG EE++ +
Sbjct: 245 NIGGGIATTGGYIAGKEEYVTQ 266
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 37.0 bits (85), Expect = 0.006
Identities = 25/185 (13%), Positives = 46/185 (24%), Gaps = 22/185 (11%)
Query: 104 KELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQG---- 158
++ AA++ + FV G + N D ++ +H ++
Sbjct: 176 VAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGD-LVLFDRNNHKSVYNSALAMA 234
Query: 159 GAS------QTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212
G + Y IG + +K + A V
Sbjct: 235 GGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLA------VIQ 288
Query: 213 THNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPV 272
Y G E+ R + D A + + + L LG
Sbjct: 289 LGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 344
Query: 273 GSILA 277
I+
Sbjct: 345 PGIIV 349
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.007
Identities = 39/273 (14%), Positives = 71/273 (26%), Gaps = 107/273 (39%)
Query: 58 PLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKE 117
PL L ++ + PT F L++ K L E A +
Sbjct: 8 PLTLSHGSLEH------VLLVPT----ASFFIASQ-----LQEQFNKILPEPTEGFAADD 52
Query: 118 AAIFVPSGTMGNLIA-IMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRG 176
P+ T L+ + + E Q + Q+ +
Sbjct: 53 E----PT-TPAELVGKFLGYVSSLV--------------EPSKVGQ---FDQVLNLC--- 87
Query: 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH---------NY----------- 216
L E E + ++IH + L+ +T NY
Sbjct: 88 ----------LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 217 ----------------------CGGTVLPMQ-----WLRELKARCQEHNIPVH--MDGAR 247
GG Q + EL+ Q +++ V + +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGG-----QGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 248 LPLAEVCASVDTVMFCLSKGLGAPVGSILAGPE 280
L+E+ + ++GL + L P
Sbjct: 193 ETLSELIRTTLDAEKVFTQGL--NILEWLENPS 223
Score = 30.4 bits (68), Expect = 0.74
Identities = 38/231 (16%), Positives = 64/231 (27%), Gaps = 86/231 (37%)
Query: 95 DVYLEDPTCKELQEKAAKL-----AGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149
D Y E EL++ L I + T+ LI D+E +
Sbjct: 167 DDYFE-----ELRD----LYQTYHVLVGDLIKFSAETLSELIR-----TTLDAEKVFTQG 212
Query: 150 SHIMLWEQG--------------------GASQTSVYSQIGRVL----------MRGVTN 179
+I+ W + G Q + Y ++L ++G T
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 180 QKDGTFDLDEMEAKFSTADNIHCAST--SLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237
G TA I + S + + L + RC E
Sbjct: 273 HSQGLV----------TAVAIAETDSWESFF--VSVRKA-------ITVLFFIGVRCYEA 313
Query: 238 NIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAPVGSILA--G-PEEFIQK 285
P LP + + S++ G P +L+ +E +Q
Sbjct: 314 -YPN----TSLPPSILEDSLEN-------NEGVP-SPMLSISNLTQEQVQD 351
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 36.6 bits (84), Expect = 0.007
Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 28/192 (14%)
Query: 109 KAAKLAGKEAAIFVPSGTMGNLIAIMT---HCDRRDSEIIVGDCSHIMLWEQGGASQTSV 165
K A + VP T +L H + II ++ +
Sbjct: 127 KLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQ------KSCFKSMI 180
Query: 166 YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225
+ V++ V + DL +EAK ++C+ +T + V
Sbjct: 181 TAGFEPVVIENVLEGDELRTDLKAVEAKVQE-----LGPDCILCIHSTTSCFAPRV--PD 233
Query: 226 WLRELKARCQEHNIPVHMDGA----------RLPLAEVCASVDTVMFCLSKGLGAPVGS- 274
L EL C ++IP ++ A + +D + L K PVG
Sbjct: 234 RLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGA 293
Query: 275 -ILAGPEEFIQK 285
I + FIQ+
Sbjct: 294 IIAGFNDSFIQE 305
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 35.6 bits (83), Expect = 0.014
Identities = 44/203 (21%), Positives = 67/203 (33%), Gaps = 54/203 (26%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQ 162
KEL++K A G E AI S N T D I+ D +H AS
Sbjct: 93 KELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAED--AIISDALNH--------AS- 141
Query: 163 TSVYSQIGRVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
++ GV K + D+ E+EA+ A A L+ +
Sbjct: 142 ----------IIDGVRLCKAKRYRYANNDMQELEARLKEARE-AGARHVLIATD------ 184
Query: 218 G-----GTVLPMQWLRELKARCQEHNIPVHMD--------GAR----LPLAEVCASVDTV 260
G G + L+ + +++ V +D G +V VD +
Sbjct: 185 GVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDII 241
Query: 261 MFCLSKGLGAPVGSILAGPEEFI 283
L K LG G A +E +
Sbjct: 242 TGTLGKALGGASGGYTAARKEVV 264
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 35.8 bits (83), Expect = 0.015
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 26/144 (18%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG-----ASQTSVYS------- 167
IF GT N + +M D ++ + L + S+ S ++
Sbjct: 162 IFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASW 221
Query: 168 -QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL---- 222
+G + V DGT D+ +++ + A + T G T
Sbjct: 222 MGLGEKAVMTVDANADGTMDITKLDEVIAQAKA---EGLIPFAIVGT---AGTTDHGAID 275
Query: 223 PMQWLRELKARCQEHNIPVHMDGA 246
L + +H++ +H+DGA
Sbjct: 276 D---LDFIADMAVKHDMWMHVDGA 296
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 35.3 bits (82), Expect = 0.017
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 57/203 (28%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQ 162
E+++ G AI +G M NL I T + + ++ D SH AS
Sbjct: 112 MEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGE--YVILDADSH--------AS- 160
Query: 163 TSVYSQIGRVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
+ G +++++ + LV +E
Sbjct: 161 ----------IYDGCQQGNAEIVRFRHNSVEDLDKRLGRLPK---EPAKLVVLE------ 201
Query: 218 G-----GTVLPMQWLRELKARCQEHNIPVHMD--------GAR----LPLAEVCASVDTV 260
G G + P L+E+ A ++H V +D G + +D V
Sbjct: 202 GVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFV 258
Query: 261 MFCLSKGLGAPVGSILAGPEEFI 283
+ SK +G VG +
Sbjct: 259 VGTFSKSVGT-VGGFVVSNHPKF 280
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 35.3 bits (82), Expect = 0.020
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
++++ AK G + + SG N+ + T C + D
Sbjct: 107 PMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNT--NVYID 149
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 35.3 bits (81), Expect = 0.021
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 34/137 (24%)
Query: 121 FVPSGTMGNLIAIMTH----CDRRDS---EIIVGDCSHIMLWEQGGASQTSVYSQIGRVL 173
GT L+A ++ R EII +H + + +
Sbjct: 131 TTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAH------------AGFDKAAYYF 178
Query: 174 ---MRGV-TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229
+R V + DL +++ +++ V + N+ G ++
Sbjct: 179 GMKLRHVELDPTTYQVDLGKVKKF--------INKNTVLLVGSAPNFPHGIADDIE---G 227
Query: 230 LKARCQEHNIPVHMDGA 246
L Q++ +P+H+D
Sbjct: 228 LGKIAQKYKLPLHVDSC 244
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 33.7 bits (78), Expect = 0.057
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
+ L+E+ A+ G A+ SG N I + D I D
Sbjct: 87 QALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKED--RIAAD 129
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 33.6 bits (78), Expect = 0.060
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 15/69 (21%)
Query: 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH--NYCGGTVLPMQWLRELKARCQEH 237
DGT L+ + F T L+ + TH N GT P L E+ +H
Sbjct: 147 NPDGTLQLETLPTLFD-------EKTRLLAI--THVSNVL-GTENP---LAEMITLAHQH 193
Query: 238 NIPVHMDGA 246
V +DGA
Sbjct: 194 GAKVLVDGA 202
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 33.3 bits (77), Expect = 0.070
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 15/70 (21%)
Query: 179 NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH--NYCGGTVLPMQWLRELKARCQE 236
+ + G + E+ S ST LV V G V LR + +
Sbjct: 147 DIETGELPTWQWESLIS-------KSTRLVAV--NSASGTL-GGVTD---LRAMTKLVHD 193
Query: 237 HNIPVHMDGA 246
V +D +
Sbjct: 194 VGALVVVDHS 203
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 33.2 bits (77), Expect = 0.092
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 181 KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH--NYCGGTVLPMQWLRELKARCQEHN 238
+ +FDL+ + S T LV V H N G V P E+ +
Sbjct: 153 EQESFDLEHFKTLLS-------EKTKLVTV--VHISNTL-GCVNP---AEEIAQLAHQAG 199
Query: 239 IPVHMDGA 246
V +D
Sbjct: 200 AKVLVDAC 207
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 32.6 bits (75), Expect = 0.12
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIM--THCDRRDSEIIVGD 148
++K + G + SG+ NL+A+ T + GD
Sbjct: 62 RFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGD 111
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 32.9 bits (75), Expect = 0.12
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 27/133 (20%)
Query: 121 FVPSGTMGNLIAIMTHCDRRDS-------EIIVGDCSHIMLWEQGGASQTSVYSQIGRVL 173
GT L+A+ T+ D + E +V +H +++ Q +
Sbjct: 165 VTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAA-FDKAA--------QYFGIK 215
Query: 174 MRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKAR 233
+ D D+ M ++V + Y G V P + E+ A
Sbjct: 216 LVRTPLDADYRADVAAMRE--------AITPNTVVVAGSAPGYPHGVVDP---IPEIAAL 264
Query: 234 CQEHNIPVHMDGA 246
EH I H+D
Sbjct: 265 AAEHGIGCHVDAC 277
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 32.8 bits (75), Expect = 0.12
Identities = 29/199 (14%), Positives = 57/199 (28%), Gaps = 25/199 (12%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
T + + K + SGT + D + + + L E G
Sbjct: 62 DTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGI 121
Query: 161 S--QTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218
+ V ++G D + K + T ++ ++ + Y
Sbjct: 122 RKQGQGSLKDFH-IGYSSVPLLENGDVDFPRIAKKMT-------PKTKMIGIQRSRGYAD 173
Query: 219 GTVLPMQWLRELKARCQEHN--IPVHMDGARLPLAEVCAS-------VDTVMFCLSKGLG 269
++ ++E+ + N + V +D E D + L K G
Sbjct: 174 RPSFTIEKIKEMIVFVKNINPEVIVFVDNC---YGEFVEYQEPPEVGADIIAGSLIKNPG 230
Query: 270 ---APVGSILAGPEEFIQK 285
A G +AG E +
Sbjct: 231 GGLAKTGGYIAGKEALVDL 249
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 32.6 bits (75), Expect = 0.13
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 16/80 (20%)
Query: 219 GTVLPMQWLRELKARCQEHNIPV--------HMDGARLPLAEVCASVDTVMFC--LSKGL 268
G V+ + L +L +HNIP+ G A + ++ C LSK L
Sbjct: 194 GNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWN-PNIILCMSLSK-L 251
Query: 269 GAP---VGSILAGPEEFIQK 285
G P G I+ ++ I
Sbjct: 252 GLPGSRCG-IIIANDKTITA 270
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 32.5 bits (74), Expect = 0.17
Identities = 31/184 (16%), Positives = 57/184 (30%), Gaps = 37/184 (20%)
Query: 104 KELQEKAAKLAGKEAAIFVPSG-TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ 162
+ ++ K F+ +G T G L I + ++ +I++ H
Sbjct: 60 LKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKG-DILMARNVHK---------- 107
Query: 163 TSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCA----STSLVCVENTHNYCG 218
SV + + G F + + ++ + + V NY G
Sbjct: 108 -SVLHAL---DISQQE----GHFIETHQSPLTNHYNKVNLSRLNNDGHKLVVLTYPNYYG 159
Query: 219 GTVLPMQWLRELKARCQEHNIPVHMDGAR--------LPLAEVCASVDTVMFCLSKGLGA 270
T + E+ + NIPV +D A P + + D V+ K L A
Sbjct: 160 ETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHKTLPA 215
Query: 271 PVGS 274
Sbjct: 216 LTMG 219
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 32.1 bits (74), Expect = 0.21
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 34/92 (36%)
Query: 170 GRVLMRGVTNQ---KDG--TFDLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTV 221
R + + + KDG T D ++E +N + C + HN G V
Sbjct: 134 ERKI---IECELLEKDGYYTIDFQKLEKLSKDKNNKALLFC---------SPHN-PVGRV 180
Query: 222 LPMQW----LRELKARCQEHNIPV-----HMD 244
W L+++K + ++ + H D
Sbjct: 181 ----WKKDELQKIKDIVLKSDLMLWSDEIHFD 208
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 31.7 bits (73), Expect = 0.22
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 34/92 (36%)
Query: 170 GRVLMRGVTNQ---KDG--TFDLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTV 221
GR + +++ ++ + + ++E K +T + C N HN G
Sbjct: 130 GRRV---ISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC---------NPHN-PIGYA 176
Query: 222 LPMQW----LRELKARCQEHNIPV-----HMD 244
W ++ + C +H + + H D
Sbjct: 177 ----WSEEEVKRIAELCAKHQVLLISDEIHGD 204
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 31.7 bits (72), Expect = 0.24
Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 32/204 (15%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ--G 158
+ + + +GT A+ + + ++ G
Sbjct: 76 DSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGN-TMLSVCGEPYDTLHDVIG 134
Query: 159 GASQ--TSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216
+ G + + V ++DG +L+E+E S+ V +
Sbjct: 135 ITENSNMGSLKEFG-INYKQVDLKEDGKPNLEEIEKVLK-------EDESITLVHIQRS- 185
Query: 217 CGGTVLPMQWLRELK-----ARCQEHNIPVHMD-------GARLPLAEVCASVDTVMFCL 264
G + ++K + +I +D + P D + L
Sbjct: 186 TGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---VGADLIAGSL 242
Query: 265 SKGLG---APVGSILAGPEEFIQK 285
K +G AP G LAG ++ I+K
Sbjct: 243 IKNIGGGIAPTGGYLAGTKDCIEK 266
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 31.8 bits (73), Expect = 0.25
Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 45/198 (22%)
Query: 104 KELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD-CSHIMLWEQGGASQ 162
+ L+ + A L KEAA+ S N + T II D +H AS
Sbjct: 94 RRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNH--------AS- 144
Query: 163 TSVYSQIGRVLMRGVTNQKDGTF-----DLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
++ G+ D+ + + D A+ L+ E+ ++
Sbjct: 145 ----------MIEGIKRNAGPKRIFRHNDVAHLRELIAADDP---AAPKLIAFESVYSMD 191
Query: 218 GGTVLPMQWLRELKARCQEHNIPVHMD--------GAR----LPLAEVCASVDTVMFCLS 265
G P++ + ++ +E ++D G R + +D L+
Sbjct: 192 -GDFGPIKEICDI---AEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLA 247
Query: 266 KGLGAPVGSILAGPEEFI 283
K G G +A +
Sbjct: 248 KAYGV-FGGYIAASARMV 264
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 31.6 bits (72), Expect = 0.26
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 219 GTVLPMQWLRELKARCQEHNIPVHMDGA-------RLPLAEVCASVDTVMFC--LSKGLG 269
G VL + + L + ++IP+ +D A + + + C LSK +G
Sbjct: 220 GNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSK-IG 278
Query: 270 AP---VGSILAGPEEFIQK 285
P G I+ + I+
Sbjct: 279 LPGMRTG-IIVADAKVIEA 296
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 31.3 bits (72), Expect = 0.35
Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 20/94 (21%)
Query: 170 GRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRE 229
R + G +L ++E F L+C N +N G V +WL E
Sbjct: 126 QREG---IFIDATGGINLHDVEKGFQAGARSI-----LLC--NPYN-PLGMVFAPEWLNE 174
Query: 230 LKARCQEHNIPV-----HMD----GARLPLAEVC 254
L ++ V H G A V
Sbjct: 175 LCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVS 208
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 31.3 bits (71), Expect = 0.35
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
+ +++ + A + + + V N N G VL + ++ C+ + + D
Sbjct: 220 ETSDVKKQLEDARS-RGINVRALVVINPGNPTG-QVLAEENQYDIVKFCKNEGLVLLAD 276
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 31.3 bits (72), Expect = 0.37
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 34/92 (36%)
Query: 170 GRVLMRGVTNQ---KDG--TFDLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTV 221
R L V+N ++G D +++E D + C N HN GG V
Sbjct: 134 NRKL---VSNSLKEENGLFQIDFEQLENDIVENDVKLYLLC---------NPHN-PGGRV 180
Query: 222 LPMQW----LRELKARCQEHNIPV-----HMD 244
W L ++ CQ+H++ + H D
Sbjct: 181 ----WEREVLEQIGHLCQKHHVILVSDEIHQD 208
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 31.1 bits (71), Expect = 0.38
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 120 IFVPSG-TMGNLIAIMTHCDRRDSEIIVG----DC--SHIMLWEQGGASQTSVYSQIGRV 172
+ V G I H D D E+I+ DC + GG + +
Sbjct: 104 VLVTVGAYEALYATIQGHVDEGD-EVIIIEPFFDCYEPMVKA--AGG---IPRFIPLKPN 157
Query: 173 LMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKA 232
G + D D +E+EA F+ T ++ + HN G V+ L +
Sbjct: 158 KTGGTISSADWVLDNNELEALFN-------EKTKMIIINTPHNPLG-KVMDRAELEVVAN 209
Query: 233 RCQEHNIPV 241
C++ N+
Sbjct: 210 LCKKWNVLC 218
>1u83_A Phosphosulfolactate synthase; structural genomics,
phosphosulfolactate PSI, protein structure initiative,
midwest center for struc genomics; 2.20A {Bacillus
subtilis} SCOP: c.1.27.1
Length = 276
Score = 31.0 bits (70), Expect = 0.41
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 216 YCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCAS 256
+ GT L + L E + +EH+I G L E S
Sbjct: 71 FGWGTSLLTKDLEEKISTLKEHDITFFFGG---TLFEKYVS 108
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 31.0 bits (71), Expect = 0.44
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 34/92 (36%)
Query: 170 GRVLMRGVTNQ---KDG--TFDLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTV 221
L V N +G D +++E + + C + HN GG V
Sbjct: 164 DHRL---VENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLC---------SPHN-PGGRV 210
Query: 222 LPMQW----LRELKARCQEHNIPV-----HMD 244
W L ++ C++H + + H D
Sbjct: 211 ----WDNDDLIKIAELCKKHGVILVSDEIHQD 238
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 31.2 bits (71), Expect = 0.44
Identities = 34/162 (20%), Positives = 56/162 (34%), Gaps = 42/162 (25%)
Query: 108 EKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG------ 159
K L G + IF P G++ N+ A+ +R + ++G
Sbjct: 155 RKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDC----------KQRGLRTLPPL 204
Query: 160 ---ASQTSVYSQ--------IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV 208
S+ YS +G +R V + G +++E + A+
Sbjct: 205 ALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEA---EGAVPF 261
Query: 209 CVENTHNYCGGTVL----PMQWLRELKARCQEHNIPVHMDGA 246
V T G TVL P L + CQ H + +H+D A
Sbjct: 262 LVSAT---SGTTVLGAFDP---LEAIADVCQRHGLWLHVDAA 297
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 30.8 bits (70), Expect = 0.45
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 33/150 (22%)
Query: 111 AKLAGKEAAI--FVPSGTMGNLIAIMTHCDR------------RDSEIIVGDCSHIMLWE 156
L + A V GT NL+A+ + +IIV +H +E
Sbjct: 79 GSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFS-FE 137
Query: 157 QGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNY 216
+G + ++D T D ++ D +
Sbjct: 138 KGRE-----MMDLE---YIYAPIKEDYTIDEKFVKDAVE--DY-----DVDGIIGIAGTT 182
Query: 217 CGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
GT+ + EL +E+NI +H+D A
Sbjct: 183 ELGTIDN---IEELSKIAKENNIYIHVDAA 209
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 30.8 bits (70), Expect = 0.50
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 44/150 (29%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGG---------ASQTSVYS--- 167
IF P G + N+ +IM + E+ +G S+ S YS
Sbjct: 155 IFSPGGAISNMYSIMAARYKYFPEV----------KTKGMAAVPKLVLFTSEQSHYSIKK 204
Query: 168 -----QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLV--CVENTHNYCGGT 220
G + + + G + EAK V V T G T
Sbjct: 205 AGAALGFGTDNVILIKCNERGKIIPADFEAKIL-----EAKQKGYVPFYVNAT---AGTT 256
Query: 221 VL----PMQWLRELKARCQEHNIPVHMDGA 246
V P ++E+ C+++N+ +H+D A
Sbjct: 257 VYGAFDP---IQEIADICEKYNLWLHVDAA 283
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 30.6 bits (70), Expect = 0.53
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 39/108 (36%)
Query: 170 GRVLMRGVTNQ---KDG--TFDLDEMEAKFSTADN---IHCASTSLVCVENTHNYCGGTV 221
R + + + D+ ++EA + + + C + N G V
Sbjct: 132 QRTV---MPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC---------SPQN-PTGKV 178
Query: 222 LPMQW----LRELKARCQEHNIPV-----HMD----GAR-LPLAEVCA 255
W L + C+ H + V HMD +P + V
Sbjct: 179 ----WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVAR 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.58
Identities = 35/265 (13%), Positives = 69/265 (26%), Gaps = 72/265 (27%)
Query: 2 LVSFREYS--DSHRQTKIAREVLTLPTPALV--ESTPLSRSWSDNGNLSIPAMYCWLLPV 57
L++ R D L + L E L + D +P P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 58 PLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLE--DPTCKELQEKAAKLAG 115
L + +IR D + + + L +P E ++ +L+
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTII------ESSLNVLEPA--EYRKMFDRLS- 379
Query: 116 KEAAIF-----VPSGTMGNL---------IAIMTHC--------DRRDSEIIVGDCS--- 150
+F +P+ + + + ++ ++S I +
Sbjct: 380 ----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 151 ----------HIML---------WEQGGASQTSV----YSQIGRVLMRGVTNQKDGTF-- 185
H + ++ + YS IG L ++ F
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 186 ---DLDEMEAKFSTADNIHCASTSL 207
D +E K AS S+
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSI 520
Score = 30.6 bits (68), Expect = 0.75
Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 57/191 (29%)
Query: 91 EVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCS 150
V +D ++++ CK++Q+ + KE + I + +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEI---------DHIIMSKDAVSG---------T 64
Query: 151 HIMLW--EQGGASQTSVYSQ-IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSL 207
+ W Q + + + VL + + F + + T T +
Sbjct: 65 LRLFWTLLS---KQEEMVQKFVEEVL------RINYKF----LMSPIKTEQRQPSMMTRM 111
Query: 208 V--CVENTHNYCGGTVLP-------------MQWLRELKARCQEHNIPVH-MDGA-RLPL 250
+ +N V Q L EL+ N+ + + G+ + +
Sbjct: 112 YIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWV 166
Query: 251 A-EVCASVDTV 260
A +VC S
Sbjct: 167 ALDVCLSYKVQ 177
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 29.5 bits (67), Expect = 1.2
Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 31/148 (20%)
Query: 100 DPTCKELQEKAAKLAGKEAAIFVPSG--TMGN----LIAIMTH-CDRRDSEIIVGDCSHI 152
+ EL+++ A K+ + V N ++ + + S+
Sbjct: 68 ERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYS 127
Query: 153 MLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN 212
M + ++ V+ D D+D + +V V
Sbjct: 128 MH---------PILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQ------PDIVFVTT 172
Query: 213 ----THNYCGGTVLPMQWLRELKARCQE 236
T G V + + +
Sbjct: 173 PNNPT-----GDVTSLDDVERIINVAPG 195
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 29.6 bits (67), Expect = 1.3
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
TFD E+E+KFS + T + + HN G V Q L+ + C +H+
Sbjct: 154 TFDPRELESKFS-------SKTKAIILNTPHNPLG-KVYTRQELQVIADLCVKHDTLC 203
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 29.1 bits (66), Expect = 1.5
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
PT L+EK + L G E+ + + SG M ++ I+
Sbjct: 114 PTTVVLEEKISALEGAESTLLMASG-MCASTVMLLALVPAGGHIVTTT 160
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
D E+ KF+ + T + + +N G V + L + + CQ+H++
Sbjct: 161 QLDPMELAGKFT-------SRTKALVLNTPNNPLG-KVFSREELELVASLCQQHDVVC 210
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 29.2 bits (66), Expect = 1.7
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
T D ++ E + + T V + HN G V + L L C +HN+
Sbjct: 188 TIDFEQFEKAIT-------SKTKAVIINTPHNPIG-KVFTREELTTLGNICVKHNV 235
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 28.8 bits (64), Expect = 1.7
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 217 CGGTVLPMQWLRELKA-RCQEHNIPVHM-DGARLPLAEVCASVDTVMFCLS 265
CG L + + V + D A++PL + SVD +FCLS
Sbjct: 76 CGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVPLED--ESVDVAVFCLS 124
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 28.7 bits (65), Expect = 1.9
Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 27/153 (17%)
Query: 100 DPTCKELQEK-AAKLAGKEAAIFVPSGTMGNL-IAIMTHCDRRDSEIIVGDCSHIMLWEQ 157
L K AA + +I + +G+ + AI + ++++ + ++
Sbjct: 50 KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEA-QLVIPELTYGDG--- 105
Query: 158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVEN----T 213
+++I + + V + FD++ ++A + S+V + N T
Sbjct: 106 ------EHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSG-----PSIVYLVNPNNPT 154
Query: 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
GT+ P + A + +D A
Sbjct: 155 -----GTITPADVIEPWIASKPAN-TMFIVDEA 181
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 28.9 bits (65), Expect = 2.1
Identities = 28/199 (14%), Positives = 63/199 (31%), Gaps = 25/199 (12%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
T +++ + SGT A+ D + + + L E G
Sbjct: 68 DTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGV 127
Query: 161 SQTSVYS--QIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCG 218
V S + + V + G D + + A ++T ++ ++ + Y
Sbjct: 128 RGKGVGSFKEYN-IGYNAVPLTEGGLVDFEAVAAAIH-------SNTKMIGIQRSKGYAT 179
Query: 219 GTVLPMQWLREL--KARCQEHNIPVHMDGARLPLAEVCAS-------VDTVMFCLSKGLG 269
+ ++E+ + + ++ V +D E D + L K G
Sbjct: 180 RPSFTISQIKEMIAFVKEIKPDVVVFVDNC---YGEFIEEQEPCHVGADLMAGSLIKNPG 236
Query: 270 ---APVGSILAGPEEFIQK 285
G + G E++++
Sbjct: 237 GGIVKTGGYIVGKEQYVEA 255
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 28.7 bits (65), Expect = 2.2
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 180 QKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNI 239
Q++G DL E+EA D T LV + + +N G V + + C+ I
Sbjct: 146 QRNGIIDLKELEAAM-RDD------TILVSIMHVNNEIG-VVQD---IAAIGEMCRARGI 194
Query: 240 PVHMDGA 246
H+D
Sbjct: 195 IYHVDAT 201
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 28.7 bits (65), Expect = 2.2
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 72 RSDTISKPTME-MKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
R+ ++ ++E K+ N G+ Y T LQ+ +L G + P G
Sbjct: 50 RASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAA 109
Query: 129 NLIAIMTHCDRRDSEIIVGD 148
+I+ ++ D +++ +
Sbjct: 110 VANSILAFIEQGD-HVLMTN 128
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 28.7 bits (65), Expect = 2.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 218 GGT-VLPMQWLRELKARCQEHNIP 240
GG V P +LR+ C+ H I
Sbjct: 214 GGLIVPPDGFLRKFADICRAHGIL 237
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 28.7 bits (65), Expect = 2.4
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 8/58 (13%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
DL +E + T + + N G V + L + + H++ +
Sbjct: 139 RLDLSALEKALT-------PRTRALLLNTPMNPTG-LVFGERELEAIARLARAHDLFL 188
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 28.7 bits (65), Expect = 2.7
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 218 GG-TVLPMQWLRELKARCQEHNIP 240
GG V +L L C+++++
Sbjct: 240 GGFIVPADGFLPTLLDWCRKNDVV 263
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 28.5 bits (64), Expect = 2.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 227 LRELKARCQEHNIPVHMDGA 246
L E+ C E +I +H+D A
Sbjct: 254 LLEVGPICHEEDIWLHVDAA 273
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 28.5 bits (64), Expect = 3.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 227 LRELKARCQEHNIPVHMDGA 246
L E +HN+ +H+D A
Sbjct: 253 LDECGPVGNKHNLWIHVDAA 272
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 28.3 bits (62), Expect = 3.6
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 140 RDSEIIVGDCSHI------MLWEQGGASQTSVYSQIGRV--LMRGVTNQKDGTFDLDEME 191
R E +G HI L G + + S ++ + + L+ N + F L E +
Sbjct: 409 RLQEFFLGRVPHIGDFYMPRLHSYGDSLEMSTFTDLRNLQALLSKFKNNEYNAFTLFEND 468
Query: 192 AKFSTAD 198
+ +A
Sbjct: 469 GQSMSAQ 475
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 27.9 bits (63), Expect = 3.9
Identities = 15/58 (25%), Positives = 16/58 (27%), Gaps = 8/58 (13%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
D E A S T LV + HN TV L H I V
Sbjct: 150 RVDWQEFAALLS-------ERTRLVILNTPHNPSA-TVWQQADFAALWQAIAGHEIFV 199
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 27.9 bits (63), Expect = 3.9
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 221 VLPMQWLRELKARCQEHNIP 240
V +L L A E+ +
Sbjct: 242 VPAPGFLATLTAWASENGVV 261
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 28.0 bits (63), Expect = 4.2
Identities = 11/58 (18%), Positives = 18/58 (31%), Gaps = 8/58 (13%)
Query: 184 TFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPV 241
D D + + T + + + HN G VL L + N+ V
Sbjct: 147 ALDADALRRAVT-------PRTRALIINSPHNPTG-AVLSATELAAIAEIAVAANLVV 196
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 27.8 bits (62), Expect = 4.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 227 LRELKARCQEHNIPVHMDGA 246
L EL C + +H+D A
Sbjct: 260 LSELGPICAREGLWLHIDAA 279
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 27.5 bits (62), Expect = 5.1
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 218 GG-TVLPMQWLRELKARCQEHNI 239
GG +++ L+A C EH I
Sbjct: 212 GGFYASSPAFMQRLRALCDEHGI 234
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative,
midwest center for structural genomic electron
transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Length = 188
Score = 27.0 bits (60), Expect = 5.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 111 AKLAGKEAAIFVPSGTM--GNLIAIMT 135
++ GK A F SG GN +A M+
Sbjct: 84 GEIDGKIACAFSSSGGWGGGNEVACMS 110
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 27.5 bits (62), Expect = 5.9
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
PT L+ A + SG M + R +++ D
Sbjct: 66 PTRTALEAALAAVEDAAFGRAFSSG-MAAADCALRAMLRPGDHVVIPD 112
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 27.2 bits (61), Expect = 6.1
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 219 GTVLPMQWLRELKARCQEHNIPV---------HMDGARLPLAEVCASVDTVMFC--LSKG 267
G + + L E++ V G + + V++ SK
Sbjct: 231 GVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKI 290
Query: 268 LGAP---VGSILAGPEEFIQK 285
L AP +G ++ I+K
Sbjct: 291 L-APGFRIGWMVG-DPGIIRK 309
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG,
protein structure initiative, BS SPSE, PSI; 2.38A
{Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Length = 385
Score = 27.2 bits (61), Expect = 7.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 222 LPMQWLRELKARCQEHNI 239
+P +W+ L C+E +
Sbjct: 98 MPAEWILPLLDYCREKQV 115
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 27.1 bits (61), Expect = 7.3
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 218 GGT-VLPMQWLRELKARCQEHNI 239
GG LP ++ LK +C+ +
Sbjct: 216 GGIIELPDGYMAALKRKCEARGM 238
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 27.1 bits (61), Expect = 7.4
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
PT +Q A+L G A+ +G M + + T + ++
Sbjct: 52 PTRDVVQRALAELEGGAGAVLTNTG-MSAIHLVTTVFLKPGDLLVAPH 98
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 27.2 bits (61), Expect = 7.6
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 218 GG-TVLPMQWLRELKARCQEHNI 239
GG + P + EL+ +++ I
Sbjct: 225 GGYVIPPKNFFAELQKLAKKYGI 247
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN;
HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A*
2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Length = 198
Score = 26.6 bits (59), Expect = 8.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 7/32 (21%)
Query: 112 KLAGKEAAIFVPSGTMG-------NLIAIMTH 136
L GK A++F +GT G + + H
Sbjct: 102 ALYGKLASVFSSTGTGGGQEQTITSTWTTLAH 133
>2r01_A Nitroreductase family protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Length = 210
Score = 26.5 bits (59), Expect = 8.9
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 8/70 (11%)
Query: 96 VYLEDP-TCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCS---- 150
+ + ++ K AG P A++ C D D
Sbjct: 61 LPVTGADMSDKVFP-CLKWAGYLEDWPGPEPGERPAAALVMLCRNEDLPGAACDSGIAAQ 119
Query: 151 HIML--WEQG 158
IML E+
Sbjct: 120 TIMLGAAEKE 129
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein
structure initiative, PSI, structural genomics; 1.70A
{Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A
1zwl_A*
Length = 200
Score = 26.6 bits (59), Expect = 9.2
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 112 KLAGKEAAIFVPSGTM--GNLIAIMT 135
L GK AA+F + ++ G ++
Sbjct: 105 SLVGKPAAVFTSTASLHGGQETTQLS 130
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural
genomics, protein structure initiative; 2.49A
{Chromobacterium violaceum atcc 12472}
Length = 350
Score = 26.8 bits (60), Expect = 9.2
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 222 LPMQWLRELKARCQEHNI 239
L + +++L A + +
Sbjct: 75 LQPEQMQKLVAEMKANGF 92
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 26.9 bits (60), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 110 AAKLAGKEAAIFVPSGT--MGNLIAIMTH 136
AA+ AG A+ +P G MG L + H
Sbjct: 104 AAR-AGITCAVLIPQGKIAMGKLAQAVMH 131
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS
protein structure initiative, midwest center for
structural genomics; 2.30A {Agrobacterium tumefaciens}
Length = 193
Score = 26.2 bits (58), Expect = 9.9
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 112 KLAGKEAAIFVPSGTMG 128
K K F S ++
Sbjct: 88 KWQDKVFGGFTNSASLN 104
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 26.7 bits (60), Expect = 10.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGD 148
PT L+ + A L G EA + + SG MG + + + R E+++G+
Sbjct: 65 PTLNLLEARMASLEGGEAGLALASG-MGAITSTLWTLLRPGDEVLLGN 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,372,875
Number of extensions: 256256
Number of successful extensions: 954
Number of sequences better than 10.0: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 109
Length of query: 285
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 192
Effective length of database: 4,105,140
Effective search space: 788186880
Effective search space used: 788186880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)