RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5413
(285 letters)
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 131 bits (331), Expect = 5e-36
Identities = 47/261 (18%), Positives = 83/261 (31%), Gaps = 40/261 (15%)
Query: 56 PVPLRLGKVNIRTVDIRSDTISKPTMEMKNYMFNC-EVGDDVYLEDPTCKELQEKAAKLA 114
P L V +D+ +D+ + + M GD+ + + L E +
Sbjct: 34 PFLLDSEDV---FIDLLTDSGTGA---VTQSMQAAMMRGDEAFSGSRSYYALAESVKNIF 87
Query: 115 GKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC-----SHIMLWEQGGASQTS----V 165
G + I G I I +R+ E + S+ G SQ +
Sbjct: 88 GYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVR 147
Query: 166 YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225
I GV G FDL+ +E + + + + T N GG + +
Sbjct: 148 NVYIKEAFDTGVRYDFKGNFDLEGLERG---IEEVGPNNVPYIVATITSNSAGGQPVSLA 204
Query: 226 WLRELKARCQEHNIPVHMDGARL---------------------PLAEVCASVDTVMFCL 264
L+ + + ++++IPV MD AR E D +
Sbjct: 205 NLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSA 264
Query: 265 SKGLGAPVGSILAGPEEFIQK 285
K P+G +L ++
Sbjct: 265 KKDAMVPMGGLLCMKDDSFFD 285
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 124 bits (311), Expect = 3e-33
Identities = 32/244 (13%), Positives = 64/244 (26%), Gaps = 37/244 (15%)
Query: 68 TVDIRSDTISKPTME-MKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGT 126
+D+ +D+ + + M +GD+ Y L++ +L G + + G
Sbjct: 44 YIDLLTDSGTNAMSDKQWAGMM---IGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGR 100
Query: 127 MGNLIAIMTHCDRRDSEI----IVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKD 182
+ H V +
Sbjct: 101 GAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATF-----VDIVRDEAHDASLNLPFK 155
Query: 183 GTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVH 242
G DL+++ + A +C+ T N GG + M +R + + I +
Sbjct: 156 GDIDLNKLATLIKEKGAENIA---YICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212
Query: 243 MDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSILAGPEE 281
D R + E+ + D K +G L +E
Sbjct: 213 YDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272
Query: 282 FIQK 285
+
Sbjct: 273 EMFS 276
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 113 bits (283), Expect = 4e-30
Identities = 95/225 (42%), Positives = 130/225 (57%), Gaps = 18/225 (8%)
Query: 69 VDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
+D+RSDT++KPT EM+ M EVGDDVY EDPT EL+ AA+ GKEAA+FVPSGTMG
Sbjct: 2 IDLRSDTVTKPTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMG 61
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
N ++IM H R D I+ D + + V+ V K+G D D
Sbjct: 62 NQVSIMAHTQRGDEVILEADSHIFWYEVGA-------MAVLSGVMPHPV-PGKNGAMDPD 113
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA-- 246
++ + H TSL+ +ENTHN GG V+P++ ++E+ +EH I VH+DGA
Sbjct: 114 DVRKAIRPRNI-HFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI 172
Query: 247 -------RLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQ 284
+P+ E D+VMFCLSKGL APVGS++ G +FI+
Sbjct: 173 FNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIE 217
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 110 bits (275), Expect = 3e-28
Identities = 35/249 (14%), Positives = 77/249 (30%), Gaps = 39/249 (15%)
Query: 68 TVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTM 127
+D+ +D+ + + + GD+ Y +L++KA +L + I G
Sbjct: 44 YIDLLTDSGTNAMSD--HQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGRG 101
Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIM----------LWEQGGASQTSVYSQIGRVLMRGV 177
I + + + E G ++ ++
Sbjct: 102 AENILFPVLLKYKQ-KEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDS--ET 158
Query: 178 TNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEH 237
+ G FD+ +++ + + + + T N GG + M L+E+ ++H
Sbjct: 159 YDDWKGDFDIKKLKENIAQHGADNIVA---IVSTVTCNSAGGQPVSMSNLKEVYEIAKQH 215
Query: 238 NIPVHMDGARL---------------------PLAEVCASVDTVMFCLSKGLGAPVGSIL 276
I V MD AR + ++ D + K +G ++
Sbjct: 216 GIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLV 275
Query: 277 AGPEEFIQK 285
A +
Sbjct: 276 AIRDNEEIF 284
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 77.8 bits (190), Expect = 7e-17
Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 25/206 (12%)
Query: 94 DDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIM 153
D+ + + ++ AA++ + FV G+ + + ++ +H
Sbjct: 59 GDLLIHEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKS 118
Query: 154 LWEQGGASQTS--VYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTAD--NIHCASTSLVC 209
++ A VY Q R + D FD ++ + D +
Sbjct: 119 VYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLA 178
Query: 210 VENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA---------RLPLAEVCA----- 255
V Y GT+ + + + D A + +
Sbjct: 179 VIQLGTYD-GTIYNAHEVVKR---IGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLG 234
Query: 256 ---SVDTVMFCLSKGLGAPVGSILAG 278
V+ + K +
Sbjct: 235 PEDPGIIVVQSVHKQQAGFSQTSQIH 260
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 76.0 bits (185), Expect = 2e-16
Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 10/179 (5%)
Query: 70 DIRSDTISKPTMEMKNYMFNCEVGD-DVYLEDPTCKELQEKAAKLAGKEAAI-FVPSGTM 127
SD I+ + E+ + G Y D +++ K ++ ++ + VP+GT
Sbjct: 6 GFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTA 65
Query: 128 GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDL 187
N + + + + + D+
Sbjct: 66 ANALCLSAMTPP-------WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDI 118
Query: 188 DEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGA 246
+ + +T CV T G++ + + + C+ ++ +HMDG+
Sbjct: 119 VRLRERT-REKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 60.6 bits (145), Expect = 4e-11
Identities = 16/192 (8%), Positives = 49/192 (25%), Gaps = 11/192 (5%)
Query: 95 DVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIML 154
D P + + K G + A + + + ++
Sbjct: 41 DEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKD----------AWVV 90
Query: 155 WEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214
++ + V ++ + + V + + + + L +
Sbjct: 91 MDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPD 150
Query: 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGLGAP-VG 273
G + + + R+P++ D ++ K + A
Sbjct: 151 GNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPI 210
Query: 274 SILAGPEEFIQK 285
++ EE+ +
Sbjct: 211 GVMGMKEEWAEI 222
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 56.9 bits (135), Expect = 6e-10
Identities = 24/204 (11%), Positives = 48/204 (23%), Gaps = 3/204 (1%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDV-YLEDPTCKELQEKAAKLAGKEAA--IFVPSGTMG 128
+D ++ + M + Y +D C + +L + A F+ GT
Sbjct: 5 VNDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQT 64
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
NLIA ++ I + + + +
Sbjct: 65 NLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIESALHEN 124
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARL 248
E +T + + + L + L
Sbjct: 125 RSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL 184
Query: 249 PLAEVCASVDTVMFCLSKGLGAPV 272
LA++ D +K G
Sbjct: 185 TLADIARLTDMFYIGATKAGGMFG 208
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 53.4 bits (127), Expect = 9e-09
Identities = 34/188 (18%), Positives = 53/188 (28%), Gaps = 29/188 (15%)
Query: 104 KELQEKAAKLAG---KEAAIFVPSGTMGNLIAIMT---HCDRRDSEIIVGDCSHIMLWEQ 157
L KLAG + VP T +L H + II
Sbjct: 97 NSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQ------ 150
Query: 158 GGASQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYC 217
++ V + V++ V + DL +EAK L T +
Sbjct: 151 KSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKI----QELGPEHILCLHSTTACFA 206
Query: 218 GGTVLPMQWLRELKARCQEHNIPVHMDGAR----------LPLAEVCASVDTVMFCLSKG 267
+ EL C ++IP ++ A + +D + L K
Sbjct: 207 PRVPDRL---EELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKN 263
Query: 268 LGAPVGSI 275
PVG
Sbjct: 264 FMVPVGGA 271
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 53.4 bits (127), Expect = 9e-09
Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 26/195 (13%)
Query: 105 ELQEKAAKLAGKEAAIFV--PSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQ 162
++ E K G S M + + + S +++ + +
Sbjct: 117 KILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-----SHKSPIK 171
Query: 163 TSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH-NYCGGTV 221
+ + L+ V + ++++E + CV +T +
Sbjct: 172 AVSFVGMNMRLVETVLDGDRVYVPVEDIENAI----KKEIELGNRPCVLSTLTFFPPRNS 227
Query: 222 LPMQWLRELKARCQEHNIPVHMDGARLPLAEVCA---------SVDTVMFCLSKGLGAPV 272
+ E+ C+ ++IP ++GA VD V+ K L P+
Sbjct: 228 DD---IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPI 284
Query: 273 GS--ILAGPEEFIQK 285
G + + EFI++
Sbjct: 285 GGGLVYSTDAEFIKE 299
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli
[TaxId: 562]}
Length = 391
Score = 46.9 bits (110), Expect = 1e-06
Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 36/195 (18%)
Query: 104 KELQEKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCD---RRDSEIIVGDCSHIMLWEQG 158
+ + A L G + +F T + +AI + ++ II H
Sbjct: 51 DIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEH------- 103
Query: 159 GASQTSVYSQIGRVLMRGVT-----NQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENT 213
+V ++ G Q++G DL E+EA T LV + +
Sbjct: 104 ----KAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-------DDTILVSIMHV 152
Query: 214 HNYCGGTVLPMQWLRELKARCQEHNIPVHMDG----ARLPLAEVCASVDTVMFCLSKGLG 269
+N G V + + E+ C+ I H+D +LP+ VD + F K G
Sbjct: 153 NNEI-GVVQDIAAIGEM---CRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYG 208
Query: 270 APVGSILAGPEEFIQ 284
L +
Sbjct: 209 PKGIGALYVRRKPRV 223
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 45.0 bits (105), Expect = 4e-06
Identities = 31/182 (17%), Positives = 54/182 (29%), Gaps = 28/182 (15%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
P +EL+ +L G + A+ V S T G IA+M E+I + +
Sbjct: 31 PKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM--- 87
Query: 161 SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220
+G + ++ + +EA + T + H G
Sbjct: 88 -----IVLLGANPVMVDVDRDTLMVTPEHIEAAITP-------QTKAIIP--VHYA--GA 131
Query: 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLAEV------CASVDTVMFCLSKGLGAPVGS 274
+ + L + + IPV D A F K + G
Sbjct: 132 PADLDAIYAL---GERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGG 188
Query: 275 IL 276
I+
Sbjct: 189 IV 190
>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA
synthase) {Amycolatopsis mediterranei [TaxId: 33910]}
Length = 384
Score = 42.5 bits (98), Expect = 3e-05
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 93 GDDVYLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152
G + + + A G A+ V +GT +A+ +E+IV + I
Sbjct: 26 GQWWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFI 85
Query: 153 MLW 155
Sbjct: 86 SSS 88
>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
{Campylobacter jejuni [TaxId: 197]}
Length = 374
Score = 41.6 bits (96), Expect = 6e-05
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHI 152
++ + E A+ + S T +A+ ++D ++ + I
Sbjct: 21 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFI 72
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 41.0 bits (95), Expect = 1e-04
Identities = 23/184 (12%), Positives = 48/184 (26%), Gaps = 30/184 (16%)
Query: 114 AGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQ----- 168
AG+ + S + L+A++ + + L + + Y+
Sbjct: 137 AGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPG---LTQGAVLEKLVAYASDQAHS 193
Query: 169 -------IGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTV 221
IG V ++ + + ++ + V +
Sbjct: 194 SVERAGLIGGVKLKAIPSDGKFAMRASALQEAL--ERDKAAGLIPFFVVATLGTTSCCSF 251
Query: 222 LPMQWLRELKARCQEHNIPVHMDGARL----------PLAEVCASVDTVMFCLSKGLGAP 271
+ E+ C E +I +H+D A L D+ F K L
Sbjct: 252 DNLL---EVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVN 308
Query: 272 VGSI 275
Sbjct: 309 FDCS 312
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 40.1 bits (93), Expect = 2e-04
Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 29/177 (16%)
Query: 121 FVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQ 180
G+ D D E+IV + E V G V+ +
Sbjct: 96 VTVGGSQALFNLFQAILDPGD-EVIVLSPYWVSYPEM-------VRFAGGVVVEVETLPE 147
Query: 181 KDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIP 240
+ D + + + T + V + +N G V P + L L EH+
Sbjct: 148 EGFVPDPERVRRAIT-------PRTKALVVNSPNNPTG-AVYPKEVLEALARLAVEHDFY 199
Query: 241 VHMD---------GARLPLAEVCASVDTVMFCLSKGLGAP---VGSILAGPEEFIQK 285
+ D G V + +K +G GP+E I+
Sbjct: 200 LVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIG-YACGPKEVIKA 255
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 37.4 bits (86), Expect = 0.001
Identities = 16/152 (10%), Positives = 34/152 (22%), Gaps = 7/152 (4%)
Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
+ +I ++ S F
Sbjct: 108 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQF 167
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD- 244
+ + + + + VE G V +L+ + C+++N+ D
Sbjct: 168 SKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADE 227
Query: 245 ------GARLPLAEVCASVDTVMFCLSKGLGA 270
L +V + L K L
Sbjct: 228 VQTGLGRTGKLLCVHHYNVKPDVILLGKALSG 259
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas
putida [TaxId: 303]}
Length = 392
Score = 36.3 bits (83), Expect = 0.003
Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 32/180 (17%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
++ T + PT+E F E Y + +PT L+ + A L G EA + + SG
Sbjct: 28 QTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAI 87
Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
+ T D ++ GV + DL
Sbjct: 88 TSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIG-----------EFGVKLRHVDMADLQA 136
Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW----LRELKARCQEHNIPVHMDG 245
+EA + T + + + ++H V +D
Sbjct: 137 LEAAMT---------------PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 35.6 bits (81), Expect = 0.005
Identities = 21/171 (12%), Positives = 35/171 (20%), Gaps = 23/171 (13%)
Query: 120 IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVY---SQIGRVLMRG 176
+ ++ M R + G Q + L
Sbjct: 119 TNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREI 178
Query: 177 VTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW--LRELKARC 234
D M +T V Y G P +
Sbjct: 179 PMRPGQLFMDPKRMIEACD-------ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQAD 231
Query: 235 QEHNIPVHMDGA-----------RLPLAEVCASVDTVMFCLSKGLGAPVGS 274
+I +H+D A + V ++ K AP+G
Sbjct: 232 TGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGC 282
>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 366
Score = 34.5 bits (78), Expect = 0.013
Identities = 27/193 (13%), Positives = 59/193 (30%), Gaps = 37/193 (19%)
Query: 104 KELQEKAAKLAGKE--AAIFVPSGTM-GNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
+++ E K G + + T L I+ ++ + H
Sbjct: 53 EKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALKPKKVIHYLPELPGH--------- 103
Query: 161 SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220
+ R F+ D++ + D T ++ +T +
Sbjct: 104 ----------PSIERSCKIVNAKYFESDKVGEILNKIDK----DTLVIITGSTMDL---K 146
Query: 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLA--------EVCASVDTVMFCLSKGLGAPV 272
V+ ++ +++ + V +D A + D V+ K + P
Sbjct: 147 VIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPR 206
Query: 273 GSILAGPEEFIQK 285
G +LAG +E + K
Sbjct: 207 GGLLAGKKELVDK 219
>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS
{Escherichia coli [TaxId: 562]}
Length = 384
Score = 34.5 bits (78), Expect = 0.014
Identities = 11/55 (20%), Positives = 17/55 (30%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLW 155
PT +Q A+L G A+ +G + D + DC
Sbjct: 50 PTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYR 104
>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia
coli [TaxId: 562]}
Length = 391
Score = 34.2 bits (77), Expect = 0.014
Identities = 18/203 (8%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 72 RSDTISKPTME-MKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMG 128
R+ ++ ++E K+ N G+ Y T LQ+ +L G + P G
Sbjct: 26 RASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAA 85
Query: 129 NLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLD 188
+I+ ++ D ++ + + G K +
Sbjct: 86 VANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTK 145
Query: 189 EMEAKFSTADNIHCASTSLVCVENTHNYCGGTVL--------PMQWLRELKARCQEHNIP 240
+ + + + + ++ + +
Sbjct: 146 IVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAAT 205
Query: 241 VHMDGARLPLAEVCASVDTVMFC 263
++ G +
Sbjct: 206 KYLVGHSDAMIGTAVCNARCWEQ 228
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 34.1 bits (77), Expect = 0.016
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
+ + + E +F + ++Y + +PT L+++ A L G +AA+ SG
Sbjct: 27 PTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQ 86
Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLW 155
+A+ T D+ + +
Sbjct: 87 FLALTTLAQAGDNIVSTPNLYGGTFN 112
>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL1 [TaxId: 5722]}
Length = 394
Score = 34.1 bits (77), Expect = 0.017
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
++ T + F + +Y L +PT L+ K A L EA + SG
Sbjct: 28 QTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAI 87
Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLW 155
++T D I
Sbjct: 88 AATVLTILKAGDHLISDECLYGCTHA 113
>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 380
Score = 33.7 bits (76), Expect = 0.019
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQ 157
PT L+ AKL + A SG M L A+ + + D
Sbjct: 49 PTRDALESLLAKLDKADRAFCFTSG-MAALSAVTHLIKNGEEIVAGDDVYGGSDRLL 104
>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter
freundii [TaxId: 546]}
Length = 397
Score = 32.4 bits (73), Expect = 0.065
Identities = 36/226 (15%), Positives = 64/226 (28%), Gaps = 38/226 (16%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
++ T + E F E +Y L +PT L++K A L EA + SG
Sbjct: 32 QTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAI 91
Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
++T C + D + + G+ + +E
Sbjct: 92 TTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMP-----------KFGINVRFVDAGKPEE 140
Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQW----LRELKARCQEHNIPVHMDG 245
+ A T T + + + + +D
Sbjct: 141 IRAAMR---------------PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDN 185
Query: 246 A------RLPLAEVCASVDTVMFCLSKGLGAPVGSILAGPEEFIQK 285
+ PL V + G G +G I+ G +EFI +
Sbjct: 186 TFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQ 231
>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 31.6 bits (72), Expect = 0.079
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 218 GGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCAS 256
GT L + L E + +EH+I G L E S
Sbjct: 49 WGTSLLTKDLEEKISTLKEHDITFFFGG---TLFEKYVS 84
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common
tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 398
Score = 31.4 bits (70), Expect = 0.12
Identities = 22/175 (12%), Positives = 46/175 (26%), Gaps = 23/175 (13%)
Query: 72 RSDTISKPTMEMKNYMFNCEVGDDVY--LEDPTCKELQEKAAKLAGKEAAIFVPSGTMGN 129
+ Y +PT L+EK + L G E+ + + SG M
Sbjct: 36 NTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEGAESTLLMASG-MCA 94
Query: 130 LIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTFDLDE 189
++ + + + + + G+T D+
Sbjct: 95 STVMLLAL----------VPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGA 144
Query: 190 MEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
+E + + S ++ + +L C E V +D
Sbjct: 145 LELALNQKKVNLFFTES--PTNPFLRCV-----DIELVSKL---CHEKGALVCID 189
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 29.7 bits (66), Expect = 0.39
Identities = 24/183 (13%), Positives = 47/183 (25%), Gaps = 9/183 (4%)
Query: 97 YLEDPTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWE 156
+ E +E KL + + +G A + + +++
Sbjct: 79 AFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFA 138
Query: 157 QGGASQTSVY--SQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTH 214
G ++ S FD+ + + + + VE
Sbjct: 139 AGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQ 198
Query: 215 NYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCAS-------VDTVMFCLSKG 267
G V +L ++ C H + D + LA V + L K
Sbjct: 199 GEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKA 258
Query: 268 LGA 270
L
Sbjct: 259 LSG 261
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 29.7 bits (65), Expect = 0.46
Identities = 30/168 (17%), Positives = 51/168 (30%), Gaps = 14/168 (8%)
Query: 108 EKAAKLAGKEAA--IFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSV 165
EK AK+ G + F T + T + + + I +
Sbjct: 51 EKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK--- 107
Query: 166 YSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQ 225
Y + ++ V G L+E+E T LV + +N G
Sbjct: 108 YLSMKGFKVKYVPVDSRGVVKLEELEKLVD-------EDTFLVSIMAANNEVGTIQPVED 160
Query: 226 WLRELKARCQEHNIPVHMD--GARLPLAEVCASVDTVMFCLSKGLGAP 271
R +K + +E + V ++P + VD F K G
Sbjct: 161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPK 208
>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 29.5 bits (65), Expect = 0.47
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 1/122 (0%)
Query: 101 PTCKELQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGA 160
P + L+ A L + + SG+ + + + I + A
Sbjct: 55 PNRENLERAVAALENAQYGLAFSSGSATTATILQSLPQGSHAVSIGDVYGGTHRYFTKVA 114
Query: 161 SQTSVYSQIGRVLMRGVTNQKDGTFDLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGT 220
+ V + L+ + L +E + + + H
Sbjct: 115 NAHGVETSFTNDLLNDLPQLIKENTKLVWIET-PTNPTLKVTDIQKVADLIKKHAAGQDV 173
Query: 221 VL 222
+L
Sbjct: 174 IL 175
>d1m4za_ b.34.12.1 (A:) Origin-recognition complex protein 120kDa
subunit, Orc1p {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 217
Score = 28.7 bits (64), Expect = 0.69
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 12/60 (20%)
Query: 88 FNCEVGDDVYLEDPTCKELQEKAAKLAGKEAAIF--VPSGTMGNLIAIMTHCDRRDSEII 145
GD V + + + + T+ N++ + R E+
Sbjct: 51 IKLGRGDSVVMHNEAAGT----------YSVYMIQELRLNTLNNVVELWALTYLRWFEVN 100
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 28.7 bits (63), Expect = 0.77
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 106 LQEKAAKLAGKEAAIFVPSGTMGNLIAIMTHCDRRDSEIIVGDC 149
L+ K AKL EA SG ++ T D +I DC
Sbjct: 3 LEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGD-HLISDDC 45
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 27.4 bits (60), Expect = 1.1
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 64 VNIRTVDIRSDTISKPTMEMKNYMFNCEVGDDVYLEDPTCKE 105
+ ++ + +D N++ + + G +V L P KE
Sbjct: 95 LCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKE 136
>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 251
Score = 27.8 bits (62), Expect = 1.6
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 218 GGT--VLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCAS 256
GT V+ ++E ++ I V+ G L E S
Sbjct: 46 WGTSAVIDRDVVKEKINYYKDWGIKVYPGG---TLFEYAYS 83
>d1rlga_ d.79.3.1 (A:) Ribosomal protein L7ae {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 113
Score = 26.7 bits (59), Expect = 1.6
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 221 VLPMQWLRELKARCQEHNIPVHMDGARLPLAEVC 254
V P + + L C+E N+P ++ L
Sbjct: 47 VDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAV 80
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 26.8 bits (59), Expect = 3.1
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 99 EDPTCKELQEKAAKLAGKEAAIFV--PSGTMGNLIAIMTH-CDRRDSEIIVGDCSHIMLW 155
E P KE+ EK K++ E + + SG ++A + H R E V +
Sbjct: 5 ESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 64
Query: 156 E 156
+
Sbjct: 65 D 65
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 25.5 bits (55), Expect = 5.2
Identities = 6/40 (15%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 63 KVNIRTVDIRSDTISK-PTMEMKNYMFNCEVGDDVYLEDP 101
+ +R ++ + + Y+ + E G +V + P
Sbjct: 88 SLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGP 127
>d1tp6a_ d.17.4.12 (A:) Hypothetical protein PA1314 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 25.1 bits (55), Expect = 5.4
Identities = 8/27 (29%), Positives = 9/27 (33%)
Query: 227 LRELKARCQEHNIPVHMDGARLPLAEV 253
L L AR E V G L +
Sbjct: 27 LDALMARFAEDFSMVTPHGVVLDKTAL 53
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 26.0 bits (56), Expect = 5.9
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 8/75 (10%)
Query: 212 NTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDGARLPLAEVCASVDTVMFCLSKGL-GA 270
Y + L + I V +G S + G+ G
Sbjct: 157 TLSGYTPYSRQEAGPDVALIEALCKAGIAVIAEGK-------IHSPEEAKKINDLGVAGI 209
Query: 271 PVGSILAGPEEFIQK 285
VG + P+E ++
Sbjct: 210 VVGGAITRPKEIAER 224
>d1kwia_ d.17.1.3 (A:) Cathelicidin motif of protegrin-3 {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 98
Score = 24.6 bits (53), Expect = 7.2
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 4/44 (9%)
Query: 193 KFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQE 236
+ + C C GTV Q L C E
Sbjct: 57 RPTRQPPELCDF----KENGRVKQCVGTVTLDQIKDPLDITCNE 96
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 25.9 bits (56), Expect = 7.5
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMDG 245
D++ ++ + V +E G ++LR + QE + +D
Sbjct: 166 DVEALKRAV--DEETAA-----VILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDE 218
Query: 246 ARLPLAEV-------CASVDTVMFCLSKGLGA 270
+ + + + L+K LG
Sbjct: 219 IQTGMGRTGKRFAFEHFGIVPDILTLAKALGG 250
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 25.7 bits (55), Expect = 8.5
Identities = 12/119 (10%), Positives = 29/119 (24%), Gaps = 5/119 (4%)
Query: 126 TMGNLIAIMTHCDRRDSEIIVGDCSHIMLWEQGGASQTSVYSQIGRVLMRGVTNQKDGTF 185
+ D+ + C + ++ DG +
Sbjct: 132 EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWK-----GYLPENLFAPAPQSRMDGEW 186
Query: 186 DLDEMEAKFSTADNIHCASTSLVCVENTHNYCGGTVLPMQWLRELKARCQEHNIPVHMD 244
D +M +++ G + +WL+ ++ C I + D
Sbjct: 187 DERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD 245
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.407
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,069,506
Number of extensions: 48860
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 47
Length of query: 285
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,254,276
Effective search space: 252109476
Effective search space used: 252109476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)