BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5414
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28FY0|TILB_XENTR Protein TILB homolog OS=Xenopus tropicalis GN=lrrc6 PE=2 SV=1
Length = 470
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 51/59 (86%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
MVR+SEDL+R+RAEHN+ EI +LEEI+LHQ+ +E+IE +DKWC+ L+IL L +N+I K+
Sbjct: 1 MVRVSEDLIRRRAEHNNCEIFSLEEISLHQQDLERIEYIDKWCRELKILYLQNNLIGKI 59
>sp|B3DH20|TILB_DANRE Protein TILB homolog OS=Danio rerio GN=lrrc6 PE=1 SV=1
Length = 440
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 50/59 (84%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
MVRISEDL+R+RAEHN+ EI +LEE++LHQ+ I++IE + KWC+ L+IL L +N+I K+
Sbjct: 1 MVRISEDLIRRRAEHNNGEIFSLEELSLHQQDIQRIEHIHKWCRDLKILYLQNNLIPKI 59
>sp|Q9VR52|TILB_DROME Protein TILB OS=Drosophila melanogaster GN=tilB PE=1 SV=1
Length = 395
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
MV I+E+LVRK++EHN++ I TLEEI+LHQE IE IE + WC+ L+ILLL SN+I++L
Sbjct: 1 MVLITEELVRKKSEHNERLISTLEEISLHQEDIEVIEHIQNWCRDLKILLLQSNLIARL 59
>sp|Q1RMR5|TILB_BOVIN Protein TILB homolog OS=Bos taurus GN=LRRC6 PE=2 SV=1
Length = 472
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
M RI+EDL+R+ AEHND I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1 MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59
>sp|O88978|TILB_MOUSE Protein TILB homolog OS=Mus musculus GN=Lrrc6 PE=1 SV=1
Length = 473
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 48/59 (81%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
M RI+EDL+R+ AEHND I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1 MGRITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59
>sp|Q86X45|TILB_HUMAN Protein TILB homolog OS=Homo sapiens GN=LRRC6 PE=1 SV=3
Length = 466
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 47/59 (79%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
M I+EDL+R+ AEHND I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1 MGWITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59
>sp|Q4R3F0|TILB_MACFA Protein TILB homolog OS=Macaca fascicularis GN=LRCC6 PE=2 SV=1
Length = 466
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 47/59 (79%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
M I+EDL+R+ AEHND I +LEE++LHQ+ IE++E +DKWC+ L+IL L +N+I K+
Sbjct: 1 MGWITEDLIRRNAEHNDCVIFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKI 59
>sp|Q9NJE9|TILB_TRYBB Protein TILB homolog OS=Trypanosoma brucei brucei GN=lrrc6 PE=3
SV=1
Length = 383
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
M RI+ DL+R+RAEHN+ + L+E+ALHQ+ IE+IE + C+ L IL L +N IS++
Sbjct: 1 MGRITTDLLRRRAEHNEGCLSNLKEVALHQQDIERIELIGDACRELEILYLCNNYISRI 59
>sp|Q3ZBN5|ASPN_BOVIN Asporin OS=Bos taurus GN=ASPN PE=2 SV=1
Length = 370
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60
I + EI L ++K+ + + K+L+I+ LHSN I+K+G
Sbjct: 278 IPRVREIHLENNKLKKVPSGLQELKYLQIIFLHSNSITKVG 318
>sp|Q9SR02|MED14_ARATH Mediator of RNA polymerase II transcription subunit 14
OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
Length = 1703
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 17 DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
+K++ L+ +A Q+ + ++ AL KWCK + ++ ++ S L
Sbjct: 42 EKKVSLLKYVAKTQQRMLRLNALAKWCKQVPLINYFQDLGSTL 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,844,308
Number of Sequences: 539616
Number of extensions: 654577
Number of successful extensions: 2295
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2280
Number of HSP's gapped (non-prelim): 15
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)