Query psy5414
Match_columns 62
No_of_seqs 82 out of 84
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 16:51:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.0 5.5E-11 1.2E-15 81.1 -0.4 59 1-61 1-59 (175)
2 PF12799 LRR_4: Leucine Rich r 97.7 2.7E-06 5.9E-11 46.6 -1.5 40 21-61 1-41 (44)
3 smart00365 LRR_SD22 Leucine-ri 96.8 0.00028 6E-09 36.1 -0.2 18 44-61 2-19 (26)
4 PF14580 LRR_9: Leucine-rich r 96.6 0.00028 6.1E-09 48.3 -1.2 40 19-59 40-79 (175)
5 KOG0531|consensus 96.5 0.00075 1.6E-08 49.4 0.0 47 14-61 88-135 (414)
6 KOG1644|consensus 96.4 0.00081 1.8E-08 49.6 -0.2 60 1-61 1-81 (233)
7 KOG2123|consensus 96.2 0.0017 3.7E-08 50.6 0.8 59 1-60 1-79 (388)
8 KOG0531|consensus 93.3 0.023 5E-07 41.6 -0.0 44 17-61 114-157 (414)
9 PF13855 LRR_8: Leucine rich r 93.0 0.0039 8.5E-08 34.3 -3.5 35 20-55 24-60 (61)
10 PF13855 LRR_8: Leucine rich r 92.7 0.0049 1.1E-07 33.9 -3.4 39 22-61 2-42 (61)
11 PF13516 LRR_6: Leucine Rich r 91.6 0.034 7.5E-07 26.3 -0.6 16 43-58 1-16 (24)
12 COG4886 Leucine-rich repeat (L 91.2 0.064 1.4E-06 38.1 0.1 38 22-60 141-179 (394)
13 PF00560 LRR_1: Leucine Rich R 89.2 0.062 1.3E-06 25.4 -0.9 16 45-60 1-16 (22)
14 KOG4194|consensus 88.9 0.11 2.4E-06 44.0 -0.3 45 15-60 284-333 (873)
15 smart00369 LRR_TYP Leucine-ric 87.4 0.14 3E-06 24.4 -0.4 17 44-60 2-18 (26)
16 smart00370 LRR Leucine-rich re 87.4 0.14 3E-06 24.4 -0.4 17 44-60 2-18 (26)
17 PF13504 LRR_7: Leucine rich r 85.8 0.17 3.6E-06 23.1 -0.5 16 44-59 1-16 (17)
18 KOG1909|consensus 82.9 0.9 1.9E-05 35.8 2.0 38 22-59 93-135 (382)
19 KOG1859|consensus 82.8 0.59 1.3E-05 40.6 1.0 41 18-59 184-224 (1096)
20 COG4886 Leucine-rich repeat (L 82.5 0.57 1.2E-05 33.3 0.8 46 16-61 158-203 (394)
21 smart00368 LRR_RI Leucine rich 79.6 0.48 1E-05 23.5 -0.3 14 44-57 2-15 (28)
22 KOG1644|consensus 77.9 0.38 8.3E-06 35.7 -1.4 45 16-60 59-104 (233)
23 KOG4194|consensus 77.0 0.41 8.8E-06 40.7 -1.6 42 19-60 100-141 (873)
24 KOG1909|consensus 66.6 1.2 2.6E-05 35.1 -1.1 38 20-58 184-227 (382)
25 KOG3207|consensus 64.1 1.1 2.5E-05 36.3 -1.6 42 19-60 119-162 (505)
26 KOG4341|consensus 62.7 4.3 9.4E-05 32.9 1.4 39 15-53 184-225 (483)
27 KOG1259|consensus 60.9 1.2 2.7E-05 35.7 -1.9 41 20-61 306-346 (490)
28 KOG0472|consensus 54.9 2.6 5.7E-05 34.6 -1.0 40 18-57 502-541 (565)
29 cd00116 LRR_RI Leucine-rich re 54.5 3.6 7.9E-05 27.6 -0.3 14 43-56 220-233 (319)
30 KOG2120|consensus 53.2 6.8 0.00015 31.3 1.0 44 13-57 177-223 (419)
31 smart00367 LRR_CC Leucine-rich 46.8 5.1 0.00011 19.1 -0.4 12 43-54 1-12 (26)
32 KOG0618|consensus 41.2 18 0.00038 32.1 1.8 39 20-58 406-444 (1081)
33 PF15082 DUF4549: Domain of un 39.5 21 0.00045 25.0 1.6 23 26-49 102-124 (144)
34 PRK15387 E3 ubiquitin-protein 37.6 4.6 9.9E-05 33.8 -2.2 35 22-59 223-257 (788)
35 COG5238 RNA1 Ran GTPase-activa 35.2 10 0.00022 30.0 -0.5 37 22-59 186-229 (388)
36 PLN03150 hypothetical protein; 34.9 7.3 0.00016 30.8 -1.3 36 21-57 442-479 (623)
37 PRK15387 E3 ubiquitin-protein 34.7 12 0.00027 31.4 -0.1 35 22-57 423-458 (788)
38 KOG0472|consensus 31.9 9.2 0.0002 31.5 -1.2 42 18-60 203-244 (565)
39 COG5238 RNA1 Ran GTPase-activa 30.2 20 0.00044 28.4 0.4 30 30-59 106-135 (388)
40 PLN00113 leucine-rich repeat r 30.0 8.7 0.00019 30.6 -1.6 36 21-57 499-536 (968)
41 KOG2739|consensus 29.2 15 0.00033 27.5 -0.4 40 20-59 64-106 (260)
42 PRK15370 E3 ubiquitin-protein 26.2 14 0.0003 30.6 -1.1 16 42-57 344-359 (754)
43 KOG1259|consensus 26.0 25 0.00055 28.4 0.3 41 21-61 284-324 (490)
44 smart00364 LRR_BAC Leucine-ric 25.7 22 0.00048 18.2 -0.0 15 45-59 3-17 (26)
45 COG2827 Predicted endonuclease 23.7 22 0.00048 23.0 -0.4 22 4-25 21-42 (95)
46 PF13124 DUF3963: Protein of u 21.6 74 0.0016 18.0 1.6 17 33-49 9-26 (40)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=5.5e-11 Score=81.14 Aligned_cols=59 Identities=32% Similarity=0.466 Sum_probs=12.6
Q ss_pred CchhhHHHHHhhcccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 1 MvriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien 61 (62)
|||+|.++|++.+.++... .+.+++|+.-.|.+||.++..+.+|+.|+|++|.|++||+
T Consensus 1 ~~~lt~~~i~~~~~~~n~~--~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~ 59 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYNNPV--KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG 59 (175)
T ss_dssp -------------------------------------S--TT-TT--EEE-TTS--S--TT
T ss_pred Ccccccccccccccccccc--ccccccccccccccccchhhhhcCCCEEECCCCCCccccC
Confidence 9999999999999999987 7899999999999999999668999999999999999986
No 2
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.7e-06 Score=46.64 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=34.3
Q ss_pred cchhhhhcchhhHHhHHh-HHHhcchhhhhhhhcCCcccccC
Q psy5414 21 GTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~-l~~~CrnLkiLyLQnN~I~kien 61 (62)
.+|++++|+.-.|..|.. ++ .|++|+.|+|++|.|+.|+.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~-~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELS-NLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGT-TCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHh-CCCCCCEEEecCCCCCCCcC
Confidence 368999999999999987 88 89999999999999998763
No 3
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=96.79 E-value=0.00028 Score=36.13 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=16.6
Q ss_pred chhhhhhhhcCCcccccC
Q psy5414 44 KHLRILLLHSNIISKLGK 61 (62)
Q Consensus 44 rnLkiLyLQnN~I~kien 61 (62)
.+|+.|||..|.|++|||
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 478999999999999997
No 4
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.62 E-value=0.00028 Score=48.26 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=11.6
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|+.++|+.-.|.+|+.+. .+++|+.|+|.+|.|+.|
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~~l~-~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLEGLP-GLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp T-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-
T ss_pred hhcCCCEEECCCCCCccccCcc-ChhhhhhcccCCCCCCcc
Confidence 4455556666666666665555 455555555555555554
No 5
>KOG0531|consensus
Probab=96.45 E-value=0.00075 Score=49.37 Aligned_cols=47 Identities=34% Similarity=0.383 Sum_probs=41.1
Q ss_pred ccccccccchhhhhcchhhHHhHHh-HHHhcchhhhhhhhcCCcccccC
Q psy5414 14 EHNDKEIGTLEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 14 Ehn~~~l~~Leel~lhq~~Ie~Ie~-l~~~CrnLkiLyLQnN~I~kien 61 (62)
++.-+.+.+|+.++|++-.|++|+. ++ .|.+|++|.|.+|.|++|++
T Consensus 88 ~~~l~~~~~l~~l~l~~n~i~~i~~~l~-~~~~L~~L~ls~N~I~~i~~ 135 (414)
T KOG0531|consen 88 LNHLSKLKSLEALDLYDNKIEKIENLLS-SLVNLQVLDLSFNKITKLEG 135 (414)
T ss_pred hcccccccceeeeeccccchhhcccchh-hhhcchheeccccccccccc
Confidence 4446778899999999999999999 77 99999999999999999874
No 6
>KOG1644|consensus
Probab=96.37 E-value=0.00081 Score=49.56 Aligned_cols=60 Identities=23% Similarity=0.467 Sum_probs=44.1
Q ss_pred CchhhHHHHHhh---------------------cccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 1 MVRISEDLVRKR---------------------AEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 1 MvriT~eLirkr---------------------aEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
|||+|.+++.+. +|--...+.....+.|.+-+|-+++++. .=++|.-|+|.||.|..|
T Consensus 1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I 79 (233)
T KOG1644|consen 1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRI 79 (233)
T ss_pred CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCC-CccccceEEecCCcceee
Confidence 899999999855 2333333445667788888888887777 667788888888888887
Q ss_pred cC
Q psy5414 60 GK 61 (62)
Q Consensus 60 en 61 (62)
++
T Consensus 80 ~p 81 (233)
T KOG1644|consen 80 DP 81 (233)
T ss_pred cc
Confidence 65
No 7
>KOG2123|consensus
Probab=96.22 E-value=0.0017 Score=50.57 Aligned_cols=59 Identities=31% Similarity=0.497 Sum_probs=48.0
Q ss_pred CchhhHHHHHhhcccc--------------------cccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414 1 MVRISEDLVRKRAEHN--------------------DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 1 MvriT~eLirkraEhn--------------------~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie 60 (62)
|+++|+.++--||.-- =.....||-|+|+=-.|-.++-+. -|.+||-|||--|.|+.+.
T Consensus 1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~-rCtrLkElYLRkN~I~sld 79 (388)
T KOG2123|consen 1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQ-RCTRLKELYLRKNCIESLD 79 (388)
T ss_pred CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHH-HHHHHHHHHHHhcccccHH
Confidence 8999999987552211 123567899999999999999999 9999999999999998763
No 8
>KOG0531|consensus
Probab=93.31 E-value=0.023 Score=41.62 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=38.7
Q ss_pred cccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414 17 DKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 17 ~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien 61 (62)
...+.+|++++++.-.|.+|+.++ .+..|+-||+.+|.|+++++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~-~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLS-TLTLLKELNLSGNLISDISG 157 (414)
T ss_pred hhhhhcchheeccccccccccchh-hccchhhheeccCcchhccC
Confidence 567889999999999999999999 66669999999999998875
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.98 E-value=0.0039 Score=34.34 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=16.0
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCC
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNI 55 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~ 55 (62)
+..|++++++.-.|..|.. +. .|++|+.|+|++|.
T Consensus 24 l~~L~~L~l~~N~l~~i~~~~f~-~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 24 LPNLETLDLSNNNLTSIPPDAFS-NLPNLRYLDLSNNN 60 (61)
T ss_dssp GTTESEEEETSSSESEEETTTTT-TSTTESEEEETSSS
T ss_pred CCCCCEeEccCCccCccCHHHHc-CCCCCCEEeCcCCc
Confidence 3444444555444444431 22 44455555555544
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=92.66 E-value=0.0049 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=32.3
Q ss_pred chhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414 22 TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 22 ~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien 61 (62)
+|+.+.++.=.|..|. .++ .+++|+.|+|++|.|..|+.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~ 42 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFS-NLPNLETLDLSNNNLTSIPP 42 (61)
T ss_dssp TESEEEETSSTESEECTTTTT-TGTTESEEEETSSSESEEET
T ss_pred cCcEEECCCCCCCccCHHHHc-CCCCCCEeEccCCccCccCH
Confidence 5778888888888885 345 78999999999999998763
No 11
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.65 E-value=0.034 Score=26.33 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=11.5
Q ss_pred cchhhhhhhhcCCccc
Q psy5414 43 CKHLRILLLHSNIISK 58 (62)
Q Consensus 43 CrnLkiLyLQnN~I~k 58 (62)
|++|+.|.|++|.|+.
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 7899999999999864
No 12
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.22 E-value=0.064 Score=38.05 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=30.5
Q ss_pred chhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCccccc
Q psy5414 22 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 22 ~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~kie 60 (62)
.|+++++++-.|..+ +.+. .|++|+.|.+++|.|+.+.
T Consensus 141 nL~~L~l~~N~i~~l~~~~~-~l~~L~~L~l~~N~l~~l~ 179 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLR-NLPNLKNLDLSFNDLSDLP 179 (394)
T ss_pred hcccccccccchhhhhhhhh-ccccccccccCCchhhhhh
Confidence 788888888888888 5777 8888888888888887654
No 13
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=89.23 E-value=0.062 Score=25.43 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred hhhhhhhhcCCccccc
Q psy5414 45 HLRILLLHSNIISKLG 60 (62)
Q Consensus 45 nLkiLyLQnN~I~kie 60 (62)
+|++|+|.+|.|+.|.
T Consensus 1 ~L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIP 16 (22)
T ss_dssp TESEEEETSSEESEEG
T ss_pred CccEEECCCCcCEeCC
Confidence 5889999999998764
No 14
>KOG4194|consensus
Probab=88.87 E-value=0.11 Score=43.96 Aligned_cols=45 Identities=29% Similarity=0.437 Sum_probs=36.7
Q ss_pred cccccc---cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414 15 HNDKEI---GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 15 hn~~~l---~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie 60 (62)
-|+|.+ .+|++++||+-.|++|+ .-+ .|..|+.|.|.+|.|.++.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~ 333 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITRLD 333 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhh-hcccceeEeccccccccCC
Confidence 355554 46788999999999996 355 7999999999999998764
No 15
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.40 E-value=0.14 Score=24.45 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.4
Q ss_pred chhhhhhhhcCCccccc
Q psy5414 44 KHLRILLLHSNIISKLG 60 (62)
Q Consensus 44 rnLkiLyLQnN~I~kie 60 (62)
.+|+.|||.+|.|+.|.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 47899999999998774
No 16
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.40 E-value=0.14 Score=24.45 Aligned_cols=17 Identities=41% Similarity=0.407 Sum_probs=14.4
Q ss_pred chhhhhhhhcCCccccc
Q psy5414 44 KHLRILLLHSNIISKLG 60 (62)
Q Consensus 44 rnLkiLyLQnN~I~kie 60 (62)
.+|+.|||.+|.|+.|.
T Consensus 2 ~~L~~L~L~~N~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNNQLSSLP 18 (26)
T ss_pred CCCCEEECCCCcCCcCC
Confidence 47899999999998774
No 17
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.85 E-value=0.17 Score=23.08 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=10.3
Q ss_pred chhhhhhhhcCCcccc
Q psy5414 44 KHLRILLLHSNIISKL 59 (62)
Q Consensus 44 rnLkiLyLQnN~I~ki 59 (62)
.+|+.|+|.+|.+..+
T Consensus 1 ~~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSL 16 (17)
T ss_dssp TT-SEEEETSS--SSE
T ss_pred CccCEEECCCCCCCCC
Confidence 4789999999987653
No 18
>KOG1909|consensus
Probab=82.90 E-value=0.9 Score=35.76 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=29.6
Q ss_pred chhhhhcc-----hhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 22 TLEEIALH-----QEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 22 ~Leel~lh-----q~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.|+.|+|| .+.++..+.+=.-|-+|++|||.||-+++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ 135 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE 135 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh
Confidence 45555554 578888886555799999999999998875
No 19
>KOG1859|consensus
Probab=82.75 E-value=0.59 Score=40.62 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=36.9
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+++.-|++++|+--...+..+|- ||.+||||.|.-|...++
T Consensus 184 qll~ale~LnLshNk~~~v~~Lr-~l~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVDNLR-RLPKLKHLDLSYNCLRHV 224 (1096)
T ss_pred HHHHHhhhhccchhhhhhhHHHH-hcccccccccccchhccc
Confidence 56788999999999999999998 999999999999987654
No 20
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=82.46 E-value=0.57 Score=33.25 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=39.9
Q ss_pred ccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414 16 NDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 16 n~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien 61 (62)
.-+.+.+|+.+.|++-.|..+........+|+.|++++|.|+.|..
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch
Confidence 4577889999999999999998776578999999999999998753
No 21
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.60 E-value=0.48 Score=23.53 Aligned_cols=14 Identities=36% Similarity=0.354 Sum_probs=12.4
Q ss_pred chhhhhhhhcCCcc
Q psy5414 44 KHLRILLLHSNIIS 57 (62)
Q Consensus 44 rnLkiLyLQnN~I~ 57 (62)
++|+.|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999986
No 22
>KOG1644|consensus
Probab=77.90 E-value=0.38 Score=35.68 Aligned_cols=45 Identities=31% Similarity=0.548 Sum_probs=33.4
Q ss_pred ccccccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCccccc
Q psy5414 16 NDKEIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 16 n~~~l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~kie 60 (62)
|=-.+..|--+.|+.-.|-+|+ .|+.+-++|+.|+|.||.|-+++
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 3345566777778888888885 68888888888888888876654
No 23
>KOG4194|consensus
Probab=77.00 E-value=0.41 Score=40.71 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=35.7
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie 60 (62)
-+-+|+++++..-++++|-..+..-.+|+.|.|++|.|+.|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~ 141 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT 141 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecccccccc
Confidence 366889999999999999877767788999999999998875
No 24
>KOG1909|consensus
Probab=66.64 E-value=1.2 Score=35.11 Aligned_cols=38 Identities=42% Similarity=0.616 Sum_probs=29.8
Q ss_pred ccchhhhhcchhhHH-----hH-HhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIE-----KI-EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie-----~I-e~l~~~CrnLkiLyLQnN~I~k 58 (62)
..+|+++.+.|-.|. .+ +.+. .|++|++|.||+|-.+.
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhh
Confidence 378999999987664 33 3456 99999999999997653
No 25
>KOG3207|consensus
Probab=64.13 E-value=1.1 Score=36.29 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=36.2
Q ss_pred cccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCccccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~kie 60 (62)
-+++|++|+|-+-.++.++. -...|++++-|.|.-|++..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~ 162 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWF 162 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHH
Confidence 47899999999999999873 6669999999999999987653
No 26
>KOG4341|consensus
Probab=62.67 E-value=4.3 Score=32.92 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=29.4
Q ss_pred cccccccchhhhhcch-hhHHhH--HhHHHhcchhhhhhhhc
Q psy5414 15 HNDKEIGTLEEIALHQ-EHIEKI--EALDKWCKHLRILLLHS 53 (62)
Q Consensus 15 hn~~~l~~Leel~lhq-~~Ie~I--e~l~~~CrnLkiLyLQn 53 (62)
|...+-++|++|+||. -.|-.. +.+++-||+|+.|.+|-
T Consensus 184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc
Confidence 4455667888888888 777665 46788899998888763
No 27
>KOG1259|consensus
Probab=60.95 E-value=1.2 Score=35.66 Aligned_cols=41 Identities=22% Similarity=0.313 Sum_probs=26.2
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien 61 (62)
+..++-+.+|+-.|-.++.|. .-.+|++|.|.+|..+++++
T Consensus 306 ~Pkir~L~lS~N~i~~v~nLa-~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQNLA-ELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred ccceeEEeccccceeeehhhh-hcccceEeecccchhHhhhh
Confidence 444555666666666666666 56667777777777776653
No 28
>KOG0472|consensus
Probab=54.93 E-value=2.6 Score=34.57 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=31.9
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
+-++.|+-++|.|-+|+.|--+=..|-||++|.|.+|.|+
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 4567788888999999988654448999999999988875
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=54.54 E-value=3.6 Score=27.55 Aligned_cols=14 Identities=36% Similarity=0.403 Sum_probs=6.4
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|.+.+|.+
T Consensus 220 ~~~L~~L~ls~n~l 233 (319)
T cd00116 220 LKSLEVLNLGDNNL 233 (319)
T ss_pred cCCCCEEecCCCcC
Confidence 34444444444443
No 30
>KOG2120|consensus
Probab=53.23 E-value=6.8 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=37.7
Q ss_pred cccccccccchhhhhcchhhHHhHH---hHHHhcchhhhhhhhcCCcc
Q psy5414 13 AEHNDKEIGTLEEIALHQEHIEKIE---ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 13 aEhn~~~l~~Leel~lhq~~Ie~Ie---~l~~~CrnLkiLyLQnN~I~ 57 (62)
|||..-+-+.|+++.|+.-.|+.=- -|+ -|+.||-|-|-+|...
T Consensus 177 ae~~~~frsRlq~lDLS~s~it~stl~~iLs-~C~kLk~lSlEg~~Ld 223 (419)
T KOG2120|consen 177 AEHFSPFRSRLQHLDLSNSVITVSTLHGILS-QCSKLKNLSLEGLRLD 223 (419)
T ss_pred hhhhhhhhhhhHHhhcchhheeHHHHHHHHH-HHHhhhhccccccccC
Confidence 8999999899999999999999763 355 9999999999887643
No 31
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=46.81 E-value=5.1 Score=19.09 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=7.8
Q ss_pred cchhhhhhhhcC
Q psy5414 43 CKHLRILLLHSN 54 (62)
Q Consensus 43 CrnLkiLyLQnN 54 (62)
|++|++|.|.+.
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 667777766554
No 32
>KOG0618|consensus
Probab=41.22 E-value=18 Score=32.10 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=33.5
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
+..|||++||--.+..|-+=-..|+.|+.|+..+|.|+.
T Consensus 406 le~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 567899999999999996544499999999999999875
No 33
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=39.51 E-value=21 Score=25.01 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=18.7
Q ss_pred hhcchhhHHhHHhHHHhcchhhhh
Q psy5414 26 IALHQEHIEKIEALDKWCKHLRIL 49 (62)
Q Consensus 26 l~lhq~~Ie~Ie~l~~~CrnLkiL 49 (62)
+-|||..+++|..|. .|+.|-.|
T Consensus 102 LLLhQfy~~ri~qL~-q~K~lhmL 124 (144)
T PF15082_consen 102 LLLHQFYTDRIEQLA-QSKYLHML 124 (144)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 568999999999999 77776443
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=37.58 E-value=4.6 Score=33.84 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=22.4
Q ss_pred chhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 22 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 22 ~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.|+.++|..-+|..|-. .+++|+.|+|.+|.|+.+
T Consensus 223 ~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsL 257 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL 257 (788)
T ss_pred CCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcc
Confidence 45666776666655432 356777777777776654
No 35
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=35.21 E-value=10 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.385 Sum_probs=26.4
Q ss_pred chhhhhcchhhHH-----hHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414 22 TLEEIALHQEHIE-----KIE--ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 22 ~Leel~lhq~~Ie-----~Ie--~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.|.++-+.|-.|+ -+- -+. +|.+|++|.||+|-.++-
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhh
Confidence 4566666666553 232 345 899999999999988764
No 36
>PLN03150 hypothetical protein; Provisional
Probab=34.85 E-value=7.3 Score=30.81 Aligned_cols=36 Identities=28% Similarity=0.321 Sum_probs=17.6
Q ss_pred cchhhhhcchhhHH-hHH-hHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIE-KIE-ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie-~Ie-~l~~~CrnLkiLyLQnN~I~ 57 (62)
..|+.++|+.-.+. .|- .++ .|++|+.|+|.+|.++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~ls 479 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFN 479 (623)
T ss_pred CCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCC
Confidence 45555555554443 222 233 4555555555555543
No 37
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=34.65 E-value=12 Score=31.39 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=18.1
Q ss_pred chhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcc
Q psy5414 22 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 22 ~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ 57 (62)
+|+.++|+.-.|..| +.+. -+++|+.|+|++|.++
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~-~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLI-HLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCcccccChHHh-hccCCCeEECCCCCCC
Confidence 445555555555544 2233 3456666666666554
No 38
>KOG0472|consensus
Probab=31.92 E-value=9.2 Score=31.54 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=25.3
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie 60 (62)
|-+.+|+-++||+-.|-..-.+. -|.-|+-||+.+|.|+-++
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~-gcs~L~Elh~g~N~i~~lp 244 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFP-GCSLLKELHVGENQIEMLP 244 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCC-ccHHHHHHHhcccHHHhhH
Confidence 44556666666666665555444 5666666666666665443
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=30.22 E-value=20 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=20.5
Q ss_pred hhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 30 QEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 30 q~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
..-++-++++-.---+|+||||.||-...+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 344555554333677889999999987765
No 40
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=30.02 E-value=8.7 Score=30.62 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=18.2
Q ss_pred cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++++|+.-.+... +.++ .|++|+.|+|++|.++
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELS-SCKKLVSLDLSHNQLS 536 (968)
T ss_pred hccCEEECcCCcceeeCChHHc-CccCCCEEECCCCccc
Confidence 3445555554444322 2333 4566666666666554
No 41
>KOG2739|consensus
Probab=29.21 E-value=15 Score=27.51 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=23.6
Q ss_pred ccchhhhhcchhh--H-HhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEH--I-EKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~--I-e~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+-+|..+-++.-+ + -..+.+-..|++|++|.|..|.|.-+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccc
Confidence 3445555555431 1 12345666788888888888887533
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=26.19 E-value=14 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=7.9
Q ss_pred hcchhhhhhhhcCCcc
Q psy5414 42 WCKHLRILLLHSNIIS 57 (62)
Q Consensus 42 ~CrnLkiLyLQnN~I~ 57 (62)
+|++|+.|+|.+|.|+
T Consensus 344 l~~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 344 LPPELQVLDVSKNQIT 359 (754)
T ss_pred hcCcccEEECCCCCCC
Confidence 3445555555555444
No 43
>KOG1259|consensus
Probab=26.04 E-value=25 Score=28.41 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=35.5
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccccC
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kien 61 (62)
.-||++.||--.|..|+.=-+.-+.++.|.|..|.|.-+.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n 324 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN 324 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh
Confidence 45899999999999997655688999999999999987765
No 44
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=25.75 E-value=22 Score=18.17 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.9
Q ss_pred hhhhhhhhcCCcccc
Q psy5414 45 HLRILLLHSNIISKL 59 (62)
Q Consensus 45 nLkiLyLQnN~I~ki 59 (62)
.|+.|..++|.++.+
T Consensus 3 ~L~~L~vs~N~Lt~L 17 (26)
T smart00364 3 SLKELNVSNNQLTSL 17 (26)
T ss_pred ccceeecCCCccccC
Confidence 578899999987653
No 45
>COG2827 Predicted endonuclease containing a URI domain [DNA replication, recombination, and repair]
Probab=23.70 E-value=22 Score=23.02 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=18.1
Q ss_pred hhHHHHHhhcccccccccchhh
Q psy5414 4 ISEDLVRKRAEHNDKEIGTLEE 25 (62)
Q Consensus 4 iT~eLirkraEhn~~~l~~Lee 25 (62)
+|.|+.||=+|||+|--...|.
T Consensus 21 vT~D~~rR~~~H~~GkgakyT~ 42 (95)
T COG2827 21 VTTDLERRLAEHNSGKGAKYTR 42 (95)
T ss_pred ecCCHHHHHHHHhcccccchhc
Confidence 6889999999999998666553
No 46
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=21.64 E-value=74 Score=17.96 Aligned_cols=17 Identities=24% Similarity=0.745 Sum_probs=12.5
Q ss_pred HHhH-HhHHHhcchhhhh
Q psy5414 33 IEKI-EALDKWCKHLRIL 49 (62)
Q Consensus 33 Ie~I-e~l~~~CrnLkiL 49 (62)
||+- ++|++|-||.+..
T Consensus 9 ieryfddiqkwirnit~c 26 (40)
T PF13124_consen 9 IERYFDDIQKWIRNITFC 26 (40)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5554 6789999998754
Done!