Query psy5414
Match_columns 62
No_of_seqs 82 out of 84
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 16:51:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 98.0 2.3E-07 7.8E-12 57.4 -2.3 57 1-59 1-57 (176)
2 2je0_A Acidic leucine-rich nuc 93.0 0.008 2.7E-07 35.5 -1.5 14 43-56 112-125 (149)
3 4ezg_A Putative uncharacterize 92.5 0.0052 1.8E-07 38.2 -2.9 38 20-58 135-173 (197)
4 2ell_A Acidic leucine-rich nuc 92.4 0.0076 2.6E-07 36.2 -2.2 38 21-58 71-109 (168)
5 1xeu_A Internalin C; cellular 92.2 0.0071 2.4E-07 39.8 -2.7 39 20-59 40-78 (263)
6 3rw6_A Nuclear RNA export fact 92.2 0.012 4.3E-07 40.8 -1.7 41 20-60 169-212 (267)
7 2je0_A Acidic leucine-rich nuc 91.9 0.011 3.8E-07 34.8 -1.9 42 18-59 61-103 (149)
8 4fmz_A Internalin; leucine ric 91.8 0.0081 2.8E-07 39.5 -2.8 40 19-59 42-81 (347)
9 1h6t_A Internalin B; cell adhe 91.7 0.0084 2.9E-07 39.9 -2.9 41 18-59 43-83 (291)
10 1xeu_A Internalin C; cellular 91.5 0.012 4.2E-07 38.6 -2.2 39 20-59 127-165 (263)
11 4ezg_A Putative uncharacterize 91.5 0.011 3.8E-07 36.7 -2.3 35 20-55 111-147 (197)
12 3rfs_A Internalin B, repeat mo 91.4 0.012 4E-07 38.3 -2.3 38 19-57 39-76 (272)
13 1ds9_A Outer arm dynein; leuci 91.0 0.0082 2.8E-07 37.3 -3.3 37 21-58 93-129 (198)
14 3rfs_A Internalin B, repeat mo 91.0 0.012 4E-07 38.3 -2.7 42 18-60 60-101 (272)
15 1h6t_A Internalin B; cell adhe 90.6 0.016 5.3E-07 38.6 -2.4 10 45-54 135-144 (291)
16 1h6u_A Internalin H; cell adhe 90.4 0.013 4.3E-07 39.2 -3.0 40 19-59 39-78 (308)
17 1ds9_A Outer arm dynein; leuci 90.1 0.0082 2.8E-07 37.3 -3.9 37 21-58 48-84 (198)
18 1a9n_A U2A', U2A'; complex (nu 89.9 0.021 7E-07 34.9 -2.1 38 20-58 87-127 (176)
19 4fmz_A Internalin; leucine ric 89.8 0.019 6.5E-07 37.8 -2.4 40 19-59 64-103 (347)
20 4g8a_A TOLL-like receptor 4; l 89.2 0.015 5E-07 40.4 -3.5 14 43-56 99-112 (635)
21 2wfh_A SLIT homolog 2 protein 89.0 0.023 8E-07 35.8 -2.4 37 22-59 32-69 (193)
22 4g8a_A TOLL-like receptor 4; l 88.9 0.018 6.2E-07 39.9 -3.2 40 21-61 52-93 (635)
23 3sb4_A Hypothetical leucine ri 88.6 0.026 8.8E-07 37.7 -2.5 40 20-61 100-141 (329)
24 3e6j_A Variable lymphocyte rec 88.3 0.018 6E-07 36.9 -3.4 39 20-59 63-103 (229)
25 2v9t_B SLIT homolog 2 protein 88.3 0.017 5.8E-07 36.9 -3.4 13 44-56 80-92 (220)
26 1h6u_A Internalin H; cell adhe 88.0 0.029 1E-06 37.4 -2.6 33 23-56 109-141 (308)
27 3g39_A Variable lymphocyte rec 87.6 0.019 6.6E-07 35.4 -3.4 38 21-59 54-93 (170)
28 2wfh_A SLIT homolog 2 protein 87.3 0.025 8.6E-07 35.6 -3.0 39 20-59 53-93 (193)
29 1w8a_A SLIT protein; signaling 87.1 0.026 8.8E-07 35.2 -3.1 39 20-59 53-93 (192)
30 2ifg_A High affinity nerve gro 87.0 0.027 9.4E-07 37.4 -3.1 38 20-58 55-94 (347)
31 3e6j_A Variable lymphocyte rec 86.9 0.033 1.1E-06 35.7 -2.7 39 20-59 111-150 (229)
32 1m9s_A Internalin B; cell inva 86.6 0.044 1.5E-06 41.2 -2.5 41 18-59 40-80 (605)
33 2ell_A Acidic leucine-rich nuc 86.6 0.019 6.6E-07 34.4 -3.7 43 17-59 20-64 (168)
34 2r9u_A Variable lymphocyte rec 86.4 0.028 9.7E-07 35.0 -3.1 39 20-59 56-96 (174)
35 2v70_A SLIT-2, SLIT homolog 2 86.3 0.027 9.4E-07 35.9 -3.3 37 20-57 56-94 (220)
36 1m9s_A Internalin B; cell inva 86.2 0.05 1.7E-06 40.9 -2.4 36 21-57 109-144 (605)
37 2r9u_A Variable lymphocyte rec 85.9 0.028 9.6E-07 35.0 -3.4 38 21-59 33-72 (174)
38 3bz5_A Internalin-J, INLJ; leu 85.3 0.045 1.5E-06 39.0 -2.9 40 19-59 40-79 (457)
39 2ifg_A High affinity nerve gro 85.3 0.026 9E-07 37.4 -3.9 40 20-60 30-72 (347)
40 3g39_A Variable lymphocyte rec 85.2 0.032 1.1E-06 34.4 -3.3 41 19-60 28-70 (170)
41 2o6s_A Variable lymphocyte rec 85.1 0.032 1.1E-06 34.5 -3.3 14 43-56 75-88 (208)
42 2o6s_A Variable lymphocyte rec 85.0 0.032 1.1E-06 34.5 -3.4 36 21-57 100-137 (208)
43 2z80_A TOLL-like receptor 2, v 84.8 0.039 1.3E-06 36.8 -3.3 38 21-59 52-91 (353)
44 2v70_A SLIT-2, SLIT homolog 2 84.8 0.041 1.4E-06 35.1 -3.1 37 21-58 81-119 (220)
45 3m19_A Variable lymphocyte rec 84.6 0.039 1.3E-06 35.3 -3.2 15 43-57 106-120 (251)
46 1o6v_A Internalin A; bacterial 84.5 0.047 1.6E-06 38.0 -3.1 39 20-59 45-83 (466)
47 1o6v_A Internalin A; bacterial 84.5 0.06 2.1E-06 37.5 -2.5 41 18-59 65-105 (466)
48 2v9t_B SLIT homolog 2 protein 84.4 0.036 1.2E-06 35.4 -3.4 38 21-59 80-119 (220)
49 2o6r_A Variable lymphocyte rec 84.3 0.036 1.2E-06 33.6 -3.3 15 43-57 75-89 (177)
50 4glp_A Monocyte differentiatio 84.0 0.14 4.9E-06 33.6 -0.7 41 19-59 195-239 (310)
51 3zyj_A Leucine-rich repeat-con 84.0 0.038 1.3E-06 38.2 -3.7 37 21-58 185-221 (440)
52 2xot_A Amphoterin-induced prot 83.6 0.041 1.4E-06 37.4 -3.6 38 20-58 63-102 (361)
53 1dce_A Protein (RAB geranylger 83.5 0.071 2.4E-06 39.6 -2.6 36 21-57 463-499 (567)
54 2xot_A Amphoterin-induced prot 83.0 0.046 1.6E-06 37.1 -3.5 39 20-59 87-127 (361)
55 3m19_A Variable lymphocyte rec 82.6 0.047 1.6E-06 34.9 -3.4 15 43-57 154-168 (251)
56 2z62_A TOLL-like receptor 4, v 82.5 0.048 1.6E-06 35.0 -3.4 37 21-58 52-90 (276)
57 2z7x_B TOLL-like receptor 1, v 82.4 0.082 2.8E-06 36.8 -2.5 38 21-59 21-60 (520)
58 3zyi_A Leucine-rich repeat-con 82.4 0.05 1.7E-06 37.7 -3.6 16 43-58 241-256 (452)
59 1p9a_G Platelet glycoprotein I 82.3 0.056 1.9E-06 36.0 -3.3 15 43-57 123-137 (290)
60 2o6q_A Variable lymphocyte rec 82.3 0.052 1.8E-06 35.1 -3.4 15 43-57 156-170 (270)
61 2ft3_A Biglycan; proteoglycan, 81.9 0.062 2.1E-06 35.5 -3.2 38 20-58 77-116 (332)
62 2xwt_C Thyrotropin receptor; s 81.3 0.031 1E-06 35.3 -4.6 17 42-58 78-95 (239)
63 2o6r_A Variable lymphocyte rec 81.1 0.056 1.9E-06 32.7 -3.4 39 20-59 75-115 (177)
64 3sb4_A Hypothetical leucine ri 80.8 0.075 2.6E-06 35.4 -3.1 40 20-61 272-314 (329)
65 1dce_A Protein (RAB geranylger 80.6 0.13 4.3E-06 38.2 -2.2 38 20-58 485-522 (567)
66 1wwl_A Monocyte differentiatio 80.6 0.052 1.8E-06 35.9 -3.9 37 20-58 252-288 (312)
67 2id5_A Lingo-1, leucine rich r 80.5 0.074 2.5E-06 36.7 -3.3 14 43-56 79-92 (477)
68 2z62_A TOLL-like receptor 4, v 80.4 0.072 2.4E-06 34.2 -3.2 15 43-57 148-162 (276)
69 4glp_A Monocyte differentiatio 80.4 0.062 2.1E-06 35.4 -3.6 37 21-59 251-287 (310)
70 4b8c_D Glucose-repressible alc 80.1 0.12 4.1E-06 39.3 -2.5 38 20-58 246-284 (727)
71 1xku_A Decorin; proteoglycan, 80.1 0.08 2.7E-06 34.8 -3.1 37 21-58 76-114 (330)
72 3v47_A TOLL-like receptor 5B a 80.0 0.076 2.6E-06 36.0 -3.3 15 43-57 346-360 (455)
73 1ozn_A Reticulon 4 receptor; N 80.0 0.066 2.2E-06 34.5 -3.5 14 43-56 152-165 (285)
74 1p9a_G Platelet glycoprotein I 79.9 0.06 2.1E-06 35.8 -3.8 42 18-59 74-115 (290)
75 3zyj_A Leucine-rich repeat-con 79.7 0.079 2.7E-06 36.6 -3.3 37 21-58 88-126 (440)
76 2z7x_B TOLL-like receptor 1, v 79.6 0.099 3.4E-06 36.3 -2.9 39 20-59 44-84 (520)
77 2z63_A TOLL-like receptor 4, v 79.5 0.09 3.1E-06 36.5 -3.1 14 43-56 148-161 (570)
78 3o53_A Protein LRIM1, AGAP0063 79.4 0.055 1.9E-06 35.9 -4.1 15 43-57 213-227 (317)
79 3o6n_A APL1; leucine-rich repe 79.2 0.15 5.1E-06 34.3 -2.1 40 19-59 293-333 (390)
80 2ast_B S-phase kinase-associat 79.1 0.22 7.5E-06 32.4 -1.2 38 20-57 92-131 (336)
81 3zyi_A Leucine-rich repeat-con 78.3 0.098 3.3E-06 36.3 -3.3 37 21-58 99-137 (452)
82 3o53_A Protein LRIM1, AGAP0063 78.2 0.11 3.8E-06 34.4 -2.9 39 20-59 168-206 (317)
83 1ozn_A Reticulon 4 receptor; N 78.1 0.087 3E-06 34.0 -3.3 39 20-59 31-71 (285)
84 2ft3_A Biglycan; proteoglycan, 77.8 0.12 4.1E-06 34.1 -2.8 39 20-59 240-279 (332)
85 4fcg_A Uncharacterized protein 77.8 0.11 3.9E-06 34.9 -3.0 38 20-58 103-141 (328)
86 2o6q_A Variable lymphocyte rec 77.8 0.09 3.1E-06 33.9 -3.3 39 20-59 156-196 (270)
87 3vq2_A TLR4, TOLL-like recepto 77.6 0.11 3.8E-06 36.7 -3.2 14 43-56 79-92 (606)
88 3a79_B TLR6, VLRB.59, TOLL-lik 77.2 0.13 4.4E-06 36.6 -2.9 38 21-59 52-91 (562)
89 1w8a_A SLIT protein; signaling 77.1 0.11 3.6E-06 32.4 -3.1 39 21-60 29-70 (192)
90 2z66_A Variable lymphocyte rec 76.5 0.12 4.3E-06 33.4 -2.9 13 44-56 223-235 (306)
91 2z63_A TOLL-like receptor 4, v 76.2 0.11 3.7E-06 36.1 -3.5 36 21-57 52-89 (570)
92 1ziw_A TOLL-like receptor 3; i 75.8 0.12 4.2E-06 37.1 -3.4 15 43-57 72-86 (680)
93 3vq2_A TLR4, TOLL-like recepto 75.8 0.13 4.4E-06 36.3 -3.2 41 19-60 78-120 (606)
94 3o6n_A APL1; leucine-rich repe 75.8 0.17 5.7E-06 34.1 -2.6 37 21-58 248-286 (390)
95 3v47_A TOLL-like receptor 5B a 75.8 0.2 6.8E-06 34.0 -2.2 13 44-56 129-141 (455)
96 4fcg_A Uncharacterized protein 75.6 0.14 4.9E-06 34.4 -3.0 39 20-59 182-221 (328)
97 3bz5_A Internalin-J, INLJ; leu 75.5 0.14 4.6E-06 36.5 -3.2 38 19-58 62-99 (457)
98 1xku_A Decorin; proteoglycan, 75.2 0.13 4.4E-06 33.9 -3.2 38 21-59 240-278 (330)
99 2z81_A CD282 antigen, TOLL-lik 75.2 0.27 9.4E-06 34.1 -1.7 16 42-57 385-400 (549)
100 3t6q_A CD180 antigen; protein- 75.1 0.14 5E-06 36.1 -3.1 37 21-58 105-143 (606)
101 2ca6_A RAN GTPase-activating p 75.1 0.4 1.4E-05 32.3 -0.9 38 20-57 273-316 (386)
102 2ca6_A RAN GTPase-activating p 74.9 0.43 1.5E-05 32.1 -0.7 14 43-56 243-256 (386)
103 2z81_A CD282 antigen, TOLL-lik 74.7 0.15 5E-06 35.5 -3.1 38 20-58 450-487 (549)
104 4b8c_D Glucose-repressible alc 74.2 0.27 9.4E-06 37.3 -2.0 38 20-58 223-261 (727)
105 1wwl_A Monocyte differentiatio 74.0 0.38 1.3E-05 31.7 -1.1 40 19-58 199-242 (312)
106 2id5_A Lingo-1, leucine rich r 73.9 0.15 5.3E-06 35.1 -3.2 41 19-60 30-72 (477)
107 2ast_B S-phase kinase-associat 73.8 0.69 2.4E-05 30.0 0.1 34 22-55 196-233 (336)
108 3goz_A Leucine-rich repeat-con 73.8 0.58 2E-05 31.5 -0.3 36 22-57 197-238 (362)
109 3a79_B TLR6, VLRB.59, TOLL-lik 73.3 0.18 6E-06 35.9 -3.1 39 20-59 75-115 (562)
110 2xwt_C Thyrotropin receptor; s 73.1 0.088 3E-06 33.2 -4.2 36 21-57 80-118 (239)
111 3t6q_A CD180 antigen; protein- 73.1 0.17 5.9E-06 35.7 -3.2 36 21-57 57-94 (606)
112 2z80_A TOLL-like receptor 2, v 72.0 1.2 4E-05 29.6 0.9 36 23-59 256-292 (353)
113 2z66_A Variable lymphocyte rec 71.0 0.26 8.8E-06 31.9 -2.5 14 43-56 51-64 (306)
114 3goz_A Leucine-rich repeat-con 71.0 0.63 2.2E-05 31.3 -0.6 37 22-58 52-94 (362)
115 3ogk_B Coronatine-insensitive 69.8 0.83 2.8E-05 31.9 -0.3 38 20-57 191-233 (592)
116 1ziw_A TOLL-like receptor 3; i 69.7 0.43 1.5E-05 34.3 -1.8 39 20-59 72-112 (680)
117 2p1m_B Transport inhibitor res 69.3 0.68 2.3E-05 32.3 -0.8 38 20-57 129-169 (594)
118 3rw6_A Nuclear RNA export fact 68.8 0.4 1.4E-05 33.2 -2.1 40 19-58 194-234 (267)
119 3oja_A Leucine-rich immune mol 68.7 0.17 5.7E-06 36.3 -4.1 39 20-58 143-183 (487)
120 3oja_A Leucine-rich immune mol 68.4 0.14 4.9E-06 36.6 -4.5 38 20-58 33-72 (487)
121 1io0_A Tropomodulin; LRR prote 68.3 1.2 4E-05 27.8 0.2 15 42-56 149-163 (185)
122 2p1m_B Transport inhibitor res 67.9 0.75 2.6E-05 32.1 -0.8 15 42-56 479-493 (594)
123 3rfe_A Platelet glycoprotein I 67.9 0.94 3.2E-05 27.6 -0.3 17 44-60 31-47 (130)
124 3g06_A SSPH2 (leucine-rich rep 67.8 0.28 9.6E-06 37.1 -3.2 13 44-56 241-253 (622)
125 4ay9_X Follicle-stimulating ho 67.1 0.18 6.1E-06 33.9 -4.0 37 20-57 29-67 (350)
126 3un9_A NLR family member X1; l 66.5 0.63 2.1E-05 32.5 -1.4 10 45-54 127-136 (372)
127 1z7x_W Ribonuclease inhibitor; 65.7 0.97 3.3E-05 30.5 -0.6 13 45-57 86-98 (461)
128 3cvr_A Invasion plasmid antige 65.4 0.33 1.1E-05 36.5 -3.2 36 21-59 80-115 (571)
129 1jl5_A Outer protein YOPM; leu 65.2 0.25 8.5E-06 35.1 -3.8 38 21-59 131-168 (454)
130 1z7x_W Ribonuclease inhibitor; 63.0 0.82 2.8E-05 30.9 -1.3 39 19-58 26-70 (461)
131 1jl5_A Outer protein YOPM; leu 62.2 0.3 1E-05 34.7 -3.8 39 20-59 172-210 (454)
132 3oja_B Anopheles plasmodium-re 62.1 0.53 1.8E-05 34.1 -2.6 38 20-58 253-292 (597)
133 3g06_A SSPH2 (leucine-rich rep 61.6 0.44 1.5E-05 36.0 -3.2 36 21-59 61-96 (622)
134 3oja_B Anopheles plasmodium-re 61.5 0.66 2.3E-05 33.5 -2.1 39 20-59 300-339 (597)
135 3j0a_A TOLL-like receptor 5; m 58.9 0.79 2.7E-05 34.7 -2.2 39 20-59 479-519 (844)
136 2ra8_A Uncharacterized protein 58.8 1 3.5E-05 31.8 -1.5 39 19-57 277-320 (362)
137 4eco_A Uncharacterized protein 58.6 0.78 2.7E-05 33.7 -2.2 39 21-59 433-472 (636)
138 3ogk_B Coronatine-insensitive 57.9 1.1 3.9E-05 31.2 -1.4 11 42-52 316-326 (592)
139 4eco_A Uncharacterized protein 55.2 0.7 2.4E-05 34.0 -2.9 40 20-59 272-320 (636)
140 3j0a_A TOLL-like receptor 5; m 54.6 0.74 2.5E-05 34.8 -3.0 38 20-58 122-162 (844)
141 1ogq_A PGIP-2, polygalacturona 54.1 0.66 2.3E-05 30.8 -3.0 36 21-57 125-162 (313)
142 4ecn_A Leucine-rich repeat pro 51.9 0.59 2E-05 37.1 -4.0 35 22-57 549-586 (876)
143 3e4g_A ATP synthase subunit S, 49.9 1.2 3.9E-05 29.5 -2.3 32 22-54 62-95 (176)
144 3rgz_A Protein brassinosteroid 49.6 1.1 3.9E-05 33.4 -2.6 39 18-57 97-139 (768)
145 4ecn_A Leucine-rich repeat pro 49.1 1.6 5.5E-05 34.6 -2.0 38 22-59 674-712 (876)
146 3rgz_A Protein brassinosteroid 43.3 0.9 3.1E-05 34.0 -4.0 14 20-33 150-163 (768)
147 4fdw_A Leucine rich hypothetic 39.1 1.7 5.9E-05 30.6 -2.9 38 22-61 158-197 (401)
148 1m45_B IQ2, IQ2 motif from MYO 28.5 11 0.00039 18.7 -0.1 8 48-55 6-13 (26)
149 1gmj_A ATPase inhibitor; coile 28.5 31 0.0011 21.1 1.9 27 23-49 50-77 (84)
150 4ayb_F DNA-directed RNA polyme 27.4 15 0.00051 22.7 0.3 26 19-44 86-112 (113)
151 3lph_A Protein REV; helix-loop 24.4 30 0.001 20.8 1.3 22 38-60 13-34 (72)
152 3ip4_C Aspartyl/glutamyl-tRNA( 21.2 40 0.0014 20.1 1.4 32 1-40 1-33 (100)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.01 E-value=2.3e-07 Score=57.41 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=46.3
Q ss_pred CchhhHHHHHhhcccccccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 1 MvriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
|||+|.++|++.+..- -..+|++++|+.-.|..|+.+..++++|+.|+|.+|.|+.+
T Consensus 1 m~~lt~~~i~~~~~~~--~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~ 57 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYT--NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57 (176)
T ss_dssp -CCCCHHHHHTSCEEE--CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE
T ss_pred CccccHHHHHHHHhcC--CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc
Confidence 9999999999876543 36788899999888888887876777899999999988765
No 2
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=92.99 E-value=0.008 Score=35.45 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=5.8
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|.+|.|
T Consensus 112 l~~L~~L~l~~N~l 125 (149)
T 2je0_A 112 LENLKSLDLFNCEV 125 (149)
T ss_dssp CTTCCEEECTTCGG
T ss_pred CCCCCEEeCcCCcc
Confidence 33444444444433
No 3
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=92.52 E-value=0.0052 Score=38.22 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=20.1
Q ss_pred ccchhhhhcchhh-HHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEH-IEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~-Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-. |..+..+. .|++|+.|+|.+|.|+.
T Consensus 135 l~~L~~L~L~~n~~i~~~~~l~-~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIMPLK-TLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CSSCCEEECCSCTBCCCCGGGG-GCSSCCEEECTTBCCCC
T ss_pred CCCCCEEEccCCCCccccHhhc-CCCCCCEEECCCCCCcC
Confidence 3455555555544 55554444 45555555555555544
No 4
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=92.40 E-value=0.0076 Score=36.22 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=17.5
Q ss_pred cchhhhhcchhhHHh-HHhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~-Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|.. +..+...|++|+.|+|.+|.|+.
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 344444554444444 33333235555555555555443
No 5
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=92.22 E-value=0.0071 Score=39.78 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=22.0
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++++.-.|..++.++ .+++|+.|+|.+|.|+.+
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~-~l~~L~~L~L~~N~i~~~ 78 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQ-FFTNLKELHLSHNQISDL 78 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred cCcCcEEECcCCCcccchHHh-hCCCCCEEECCCCccCCC
Confidence 455555566655555555554 455666666666655543
No 6
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=92.17 E-value=0.012 Score=40.83 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred ccchhhhhcchhhHHhHHhH---HHhcchhhhhhhhcCCccccc
Q psy5414 20 IGTLEEIALHQEHIEKIEAL---DKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l---~~~CrnLkiLyLQnN~I~kie 60 (62)
+..|+.|+|+.-.|..|..+ -..|++|+.|+|++|.|+.++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~ 212 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER 212 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch
Confidence 55788888888888776543 247889999999999888653
No 7
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=91.92 E-value=0.011 Score=34.84 Aligned_cols=42 Identities=26% Similarity=0.466 Sum_probs=34.7
Q ss_pred ccccchhhhhcchhhHHh-HHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEK-IEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~-Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+.+|+.++|+.-.|.. +...-..|++|+.|+|.+|.|+.+
T Consensus 61 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~ 103 (149)
T 2je0_A 61 PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103 (149)
T ss_dssp CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence 346789999999988888 766655799999999999998764
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=91.79 E-value=0.0081 Score=39.55 Aligned_cols=40 Identities=20% Similarity=0.483 Sum_probs=30.1
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|++++++...|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~-~~~~L~~L~l~~n~i~~~ 81 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIE-YLTNLEYLNLNGNQITDI 81 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred hcccccEEEEeCCccccchhhh-hcCCccEEEccCCccccc
Confidence 5677778888877777777776 678888888888777654
No 9
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=91.66 E-value=0.0084 Score=39.89 Aligned_cols=41 Identities=15% Similarity=0.478 Sum_probs=29.4
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
..+.+|++++++.-.|..++.++ .|++|+.|+|.+|.|+.+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~-~l~~L~~L~L~~n~l~~~ 83 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDI 83 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred hhcCcccEEEccCCCcccChhHh-cCCCCCEEEccCCccCCC
Confidence 34667777777777777776666 677777777777777654
No 10
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=91.51 E-value=0.012 Score=38.64 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=21.3
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 127 l~~L~~L~Ls~N~i~~~~~l~-~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIVMLG-FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTCCEEECTTSCCCBCGGGG-GCTTCCEEECTTSCCCBC
T ss_pred cccccEEECCCCcCCCChHHc-cCCCCCEEECCCCcCcch
Confidence 445555555555555555444 455566666666655543
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=91.48 E-value=0.011 Score=36.72 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=16.5
Q ss_pred ccchhhhhcchhhHHh--HHhHHHhcchhhhhhhhcCC
Q psy5414 20 IGTLEEIALHQEHIEK--IEALDKWCKHLRILLLHSNI 55 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~--Ie~l~~~CrnLkiLyLQnN~ 55 (62)
+.+|++++|+.-.|.. ...++ .|++|+.|+|.+|.
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNG 147 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCT
T ss_pred CCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCC
Confidence 3445555555444443 33343 44555555555554
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=91.40 E-value=0.012 Score=38.32 Aligned_cols=38 Identities=18% Similarity=0.469 Sum_probs=18.2
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+.+|+++.++.-.|..+..++ .|++|+.|+|.+|.|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~-~l~~L~~L~l~~n~l~ 76 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQ-YLPNVRYLALGGNKLH 76 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGG-GCTTCCEEECTTSCCC
T ss_pred cccceeeeeeCCCCcccccccc-cCCCCcEEECCCCCCC
Confidence 3444445555544444444444 4455555555544444
No 13
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=90.98 E-value=0.0082 Score=37.34 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=19.3
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.
T Consensus 93 ~~L~~L~L~~N~l~~l~~~~-~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 93 DTLEELWISYNQIASLSGIE-KLVNLRVLYMSNNKITN 129 (198)
T ss_dssp HHCSEEEEEEEECCCHHHHH-HHHHSSEEEESEEECCC
T ss_pred CcCCEEECcCCcCCcCCccc-cCCCCCEEECCCCcCCc
Confidence 44555555555555554444 45555555555555543
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=90.97 E-value=0.012 Score=38.33 Aligned_cols=42 Identities=24% Similarity=0.319 Sum_probs=36.4
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~kie 60 (62)
+.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+.
T Consensus 60 ~~l~~L~~L~l~~n~l~~~~~l~-~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHDISALK-ELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp GGCTTCCEEECTTSCCCCCGGGT-TCTTCCEEECTTSCCCCCC
T ss_pred ccCCCCcEEECCCCCCCCchhhc-CCCCCCEEECCCCccCccC
Confidence 45788999999998888888787 8999999999999988754
No 15
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=90.62 E-value=0.016 Score=38.57 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=3.6
Q ss_pred hhhhhhhhcC
Q psy5414 45 HLRILLLHSN 54 (62)
Q Consensus 45 nLkiLyLQnN 54 (62)
+|+.|+|.+|
T Consensus 135 ~L~~L~l~~n 144 (291)
T 1h6t_A 135 QLESLYLGNN 144 (291)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEEccCC
Confidence 3333333333
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=90.43 E-value=0.013 Score=39.21 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=28.5
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|++++++.-.|..+..+. .|++|+.|+|.+|.|+.+
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~-~l~~L~~L~L~~n~i~~~ 78 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQ-YLNNLIGLELKDNQITDL 78 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred HcCCcCEEEeeCCCccCchhhh-ccCCCCEEEccCCcCCCC
Confidence 4667777777777777776666 677777777777777654
No 17
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=90.07 E-value=0.0082 Score=37.35 Aligned_cols=37 Identities=41% Similarity=0.538 Sum_probs=18.8
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..|..+. .|++|+.|+|.+|.|+.
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~-~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLS-GMENLRILSLGRNLIKK 84 (198)
T ss_dssp TTCSEEECSEEEESCCCCHH-HHTTCCEEEEEEEEECS
T ss_pred CCCCEEECCCCCCccccccc-cCCCCCEEECCCCCccc
Confidence 34555555555554444444 44555555555555543
No 18
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=89.92 E-value=0.021 Score=34.88 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=17.7
Q ss_pred ccchhhhhcchhhHHhHHh---HHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~---l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.|..+.. +. .|++|+.|+|.+|.|+.
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~-~l~~L~~L~l~~N~i~~ 127 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLA-SLKSLTYLCILRNPVTN 127 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGG-GCTTCCEEECCSSGGGG
T ss_pred CCCCCEEECCCCcCCcchhhHhhh-cCCCCCEEEecCCCCCC
Confidence 3445555555444443332 32 34555555555555543
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=89.83 E-value=0.019 Score=37.77 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=22.2
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|++++|+.-.|..+..+. .|++|+.|+|.+|.|+.+
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~-~l~~L~~L~L~~n~i~~~ 103 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLS-NLVKLTNLYIGTNKITDI 103 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred hcCCccEEEccCCccccchhhh-cCCcCCEEEccCCcccCc
Confidence 3455666666655555555444 555666666666555443
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=89.19 E-value=0.015 Score=40.40 Aligned_cols=14 Identities=43% Similarity=0.570 Sum_probs=5.7
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|.+|.|
T Consensus 99 L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 99 LSHLSTLILTGNPI 112 (635)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCCCEEEccCCcC
Confidence 33444444444433
No 21
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=89.02 E-value=0.023 Score=35.79 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=17.8
Q ss_pred chhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccc
Q psy5414 22 TLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 22 ~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+|++++|+.-.|..| +.++ .+++|+.|+|++|.|+.+
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~-~l~~L~~L~Ls~N~i~~i 69 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELS-NYKHLTLIDLSNNRISTL 69 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGG-GCTTCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCchhHHHhh-cccCCCEEECCCCcCCEe
Confidence 455555555444444 2333 445555555555555444
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=88.91 E-value=0.018 Score=39.94 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=34.6
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien 61 (62)
.++++++|+.-.|..|. .++ .|++|++|+|++|.|+.|+.
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~-~l~~L~~L~Ls~N~i~~i~~ 93 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIED 93 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECT
T ss_pred cCCCEEEeeCCCCCCCCHHHHh-CCCCCCEEECCCCcCCCcCh
Confidence 47899999999999884 466 79999999999999998863
No 23
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=88.57 E-value=0.026 Score=37.67 Aligned_cols=40 Identities=28% Similarity=0.437 Sum_probs=33.7
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccccC
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~kien 61 (62)
+.+|++|.|.. .|..|+. .. .|++|+.|.|.+|.|..|..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~-~~~~L~~l~l~~n~i~~i~~ 141 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFK-GCDNLKICQIRKKTAPNLLP 141 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTT-TCTTCCEEEBCCSSCCEECT
T ss_pred cCCCcEEECCc-cccchhHHHhh-cCcccceEEcCCCCccccch
Confidence 68899999999 9999964 55 89999999999999877753
No 24
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=88.31 E-value=0.018 Score=36.93 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=19.2
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..|.. ++ .+++|+.|+|++|.|+.+
T Consensus 63 l~~L~~L~L~~N~l~~i~~~~~~-~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 63 LINLKELYLGSNQLGALPVGVFD-SLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred ccCCcEEECCCCCCCCcChhhcc-cCCCcCEEECCCCcCCcc
Confidence 3445555555555544431 22 455555555555555443
No 25
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=88.31 E-value=0.017 Score=36.91 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=5.0
Q ss_pred chhhhhhhhcCCc
Q psy5414 44 KHLRILLLHSNII 56 (62)
Q Consensus 44 rnLkiLyLQnN~I 56 (62)
++|+.|+|++|.|
T Consensus 80 ~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 80 RSLNSLVLYGNKI 92 (220)
T ss_dssp SSCCEEECCSSCC
T ss_pred cCCCEEECCCCcC
Confidence 3333333333333
No 26
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=87.95 E-value=0.029 Score=37.42 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=12.4
Q ss_pred hhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCc
Q psy5414 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNII 56 (62)
Q Consensus 23 Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I 56 (62)
|++++|+.-.|..+..+. .+++|+.|+|.+|.|
T Consensus 109 L~~L~l~~n~l~~~~~l~-~l~~L~~L~l~~n~l 141 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTPLA-GLSNLQVLYLDLNQI 141 (308)
T ss_dssp CCEEECTTSCCCCCGGGT-TCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCCCchhhc-CCCCCCEEECCCCcc
Confidence 333333333333333333 333344444444333
No 27
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=87.62 E-value=0.019 Score=35.40 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=16.9
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|.. ++ .+++|+.|+|.+|.|+.+
T Consensus 54 ~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 54 TQLTRLDLDNNQLTVLPAGVFD-KLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred ccCCEEECCCCCcCccChhhcc-CCCCCCEEECCCCccCEe
Confidence 344444444444444421 12 344455555555544433
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=87.31 E-value=0.025 Score=35.63 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=19.0
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.. +. .+++|+.|+|.+|.|+.+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i 93 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCI 93 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBC
T ss_pred ccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEe
Confidence 3445555555555554432 33 345555555555555443
No 29
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=87.12 E-value=0.026 Score=35.23 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=19.8
Q ss_pred ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+ +.++ ..++|+.|+|++|.|+.+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 93 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEI 93 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCcc
Confidence 44555555555555554 1233 445555555555555443
No 30
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=87.02 E-value=0.027 Score=37.36 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=17.2
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++|+|+.-.|..|. .++ .+++|+.|+|.+|.|+.
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDAFH-FTPRLSRLNLSFNALES 94 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTGGG-SCSCCCEEECCSSCCSC
T ss_pred ccCCCEEECCCCccceeCHHHhc-CCcCCCEEeCCCCccce
Confidence 344444444444444442 122 34455555555555443
No 31
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=86.94 E-value=0.033 Score=35.66 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=19.9
Q ss_pred ccchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..| ..+. .+++|+.|+|++|.|+.+
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGIE-RLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTGG-GCTTCSEEECCSSCCCCC
T ss_pred chhhCeEeccCCcccccCcccc-cCCCCCEEECCCCcCCcc
Confidence 44555555555555544 2333 455555555555555543
No 32
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=86.63 E-value=0.044 Score=41.18 Aligned_cols=41 Identities=15% Similarity=0.478 Sum_probs=28.9
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
..+..|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~-~l~~L~~L~Ls~N~l~~~ 80 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQ-YLPNVTKLFLNGNKLTDI 80 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGG-GCTTCCEEECTTSCCCCC
T ss_pred hcCCCCCEEECcCCCCCCChHHc-cCCCCCEEEeeCCCCCCC
Confidence 45667777777777777776666 677777777777776654
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=86.59 E-value=0.019 Score=34.41 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=22.7
Q ss_pred cccccchhhhhcchhhHH--hHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 17 DKEIGTLEEIALHQEHIE--KIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 17 ~~~l~~Leel~lhq~~Ie--~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.....+|++++|+.-.|. .|...-..+++|+.|+|.+|.|+.+
T Consensus 20 ~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~ 64 (168)
T 2ell_A 20 NRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64 (168)
T ss_dssp TSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC
T ss_pred cCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh
Confidence 334455666666655554 4433212456666666666655543
No 34
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=86.40 E-value=0.028 Score=34.96 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=18.2
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|+.++|+.-.|..|.. ++ .+++|+.|+|++|.|+.+
T Consensus 56 l~~L~~L~Ls~N~l~~i~~~~~~-~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 56 LVNLQQLYFNSNKLTAIPTGVFD-KLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred CcCCCEEECCCCCCCccChhHhC-CcchhhEEECCCCcccee
Confidence 3444555555444444421 12 345555555555555443
No 35
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=86.29 E-value=0.027 Score=35.93 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=16.1
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ 57 (62)
+.+|++++|+.-.|..|.. ++ .+++|+.|+|.+|.|+
T Consensus 56 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 56 LPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSNRLE 94 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCCccC
Confidence 3444444444444444431 33 3444444444444443
No 36
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=86.22 E-value=0.05 Score=40.86 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=15.9
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++|+|+.-.|..+..+. .|++|+.|+|.+|.|+
T Consensus 109 ~~L~~L~Ls~N~l~~l~~l~-~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDINGLV-HLPQLESLYLGNNKIT 144 (605)
T ss_dssp TTCCEEECTTSCCCCCGGGG-GCTTCSEEECCSSCCC
T ss_pred CCCCEEEecCCCCCCCcccc-CCCccCEEECCCCccC
Confidence 34444444444444444443 3444444444444443
No 37
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=85.86 E-value=0.028 Score=34.97 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=18.9
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..+. .++ .+++|+.|+|.+|.|+.+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~i 72 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTAI 72 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCcc
Confidence 44555555555555442 233 445555555555555444
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=85.30 E-value=0.045 Score=39.00 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=30.1
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
-+..|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~-~l~~L~~L~Ls~n~l~~~ 79 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIE-KLTGLTKLICTSNNITTL 79 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGG-GCTTCSEEECCSSCCSCC
T ss_pred HcCCCCEEEccCCCcccChhhc-ccCCCCEEEccCCcCCeE
Confidence 3677888888887777776666 678888888888877654
No 39
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=85.27 E-value=0.026 Score=37.45 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=31.7
Q ss_pred ccchhhhhcch-hhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414 20 IGTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 20 l~~Leel~lhq-~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie 60 (62)
+.+|++|+|+. -.|..|. .++ .+++|+.|+|++|.|+.+.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSCCCEEC
T ss_pred CCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCccceeC
Confidence 45689999984 7777775 355 6889999999999998764
No 40
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=85.22 E-value=0.032 Score=34.39 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=33.2
Q ss_pred cccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414 19 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie 60 (62)
...+|++++|+.-.|..+. .++ .+++|+.|+|.+|.|+.+.
T Consensus 28 ~~~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~ 70 (170)
T 3g39_A 28 IPTTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLP 70 (170)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCC
T ss_pred CCCCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccC
Confidence 3477889999998888884 355 6889999999999998764
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=85.08 E-value=0.032 Score=34.50 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=5.8
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
+++|+.|+|.+|.|
T Consensus 75 l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 75 LTSLTYLNLSTNQL 88 (208)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCcCEEECCCCcC
Confidence 34444444444433
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=85.04 E-value=0.032 Score=34.52 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=15.2
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+
T Consensus 100 ~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 100 TQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred cCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccc
Confidence 344444444444433321 22 3444444555444444
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=84.81 E-value=0.039 Score=36.82 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=22.6
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..+.. ++ .|++|+.|+|++|.|+.+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQ-RCVNLQALVLTSNGINTI 91 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSCCCEE
T ss_pred ccCcEEECCCCcCcccCHHHhc-cCCCCCEEECCCCccCcc
Confidence 356666666666665532 44 566666666666666554
No 44
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=84.80 E-value=0.041 Score=35.12 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=16.1
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+.
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 119 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFK-GLESLKTLMLRSNRITC 119 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGT-TCSSCCEEECTTSCCCC
T ss_pred CCCCEEECCCCccCccCHhHhc-CCcCCCEEECCCCcCCe
Confidence 344444444444444321 22 34444444444444443
No 45
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=84.56 E-value=0.039 Score=35.33 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=6.2
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|++|.|+
T Consensus 106 l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 106 LTQLDKLYLGGNQLK 120 (251)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cCCCCEEEcCCCcCC
Confidence 344444444444443
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=84.51 E-value=0.047 Score=38.02 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=24.8
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+..++.++++...|..+..+. .|++|+.|+|.+|.|+.+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~-~l~~L~~L~Ls~n~l~~~ 83 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDI 83 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGG-GCTTCCEEECCSSCCCCC
T ss_pred hccccEEecCCCCCccCcchh-hhcCCCEEECCCCccCCc
Confidence 456666666666666666555 566677676666666543
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=84.47 E-value=0.06 Score=37.45 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=27.4
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+.+|++++|+.-.|..+..++ .|++|+.|+|.+|.|+.+
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~l~~n~l~~~ 105 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITPLK-NLTKLVDILMNNNQIADI 105 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGGGT-TCTTCCEEECCSSCCCCC
T ss_pred hhhcCCCEEECCCCccCCchhhh-ccccCCEEECCCCccccC
Confidence 34667777777777766665555 667777777777766543
No 48
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=84.44 E-value=0.036 Score=35.37 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=18.2
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|.. +. .+++|+.|+|.+|.|+.+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~-~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFE-GLFSLQLLLLNANKINCL 119 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred cCCCEEECCCCcCCccCHhHcc-CCCCCCEEECCCCCCCEe
Confidence 445555555555544432 22 345555555555555443
No 49
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=84.26 E-value=0.036 Score=33.58 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=6.5
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|++|.|+
T Consensus 75 l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 75 LTKLTILYLHENKLQ 89 (177)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCccCEEECCCCCcc
Confidence 344444444444443
No 50
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=84.00 E-value=0.14 Score=33.64 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=26.5
Q ss_pred cccchhhhhcchhhHHhHHh----HHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~----l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|+++.|+.=.|..+.. +-..+++|+.|+|++|.|+.+
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 45667777777766665554 222567777777777777654
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=84.00 E-value=0.038 Score=38.17 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=16.4
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+..+. .+++|+.|+|.+|.|+.
T Consensus 185 ~~L~~L~L~~n~l~~~~~~~-~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 185 SNLRYLNLAMCNLREIPNLT-PLIKLDELDLSGNHLSA 221 (440)
T ss_dssp SSCCEEECTTSCCSSCCCCT-TCSSCCEEECTTSCCCE
T ss_pred cccCeecCCCCcCccccccC-CCcccCEEECCCCccCc
Confidence 34444444444444444333 34444444444444433
No 52
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=83.56 E-value=0.041 Score=37.37 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=17.7
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|+.++|+.-.|..|. .+. .+++|+.|+|.+|.|+.
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N~l~~ 102 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSSNHLHT 102 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCE
T ss_pred ccccCEEECCCCcCCccChhhcc-CCCCCCEEECCCCcCCc
Confidence 344555555544444443 133 44455555555554443
No 53
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=83.55 E-value=0.071 Score=39.55 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=14.5
Q ss_pred cchhhhhcchhhHHhH-HhHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~I-e~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|+.++|+.-.|..| ..++ .+++|+.|+|++|.|+
T Consensus 463 ~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 463 LLVTHLDLSHNRLRALPPALA-ALRCLEVLQASDNALE 499 (567)
T ss_dssp TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCC
T ss_pred ccCcEeecCcccccccchhhh-cCCCCCEEECCCCCCC
Confidence 3444444444444433 2233 3344444444444433
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=82.97 E-value=0.046 Score=37.11 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=21.8
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+.+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFS-DLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCcCCcCCHHHhC-CCcCCCEEECCCCcccEE
Confidence 4456666666655555532 33 456666666666666544
No 55
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=82.63 E-value=0.047 Score=34.92 Aligned_cols=15 Identities=27% Similarity=0.374 Sum_probs=6.6
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|++|.|+
T Consensus 154 l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CcCCCEEECCCCcCC
Confidence 344444444444443
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=82.50 E-value=0.048 Score=35.02 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=16.7
Q ss_pred cchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+.
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQS 90 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCCE
T ss_pred cCCcEEECCCCcCCccCHHHcc-CCcCCCEEECCCCccCc
Confidence 344444554444444421 33 34455555555554443
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=82.43 E-value=0.082 Score=36.75 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=18.5
Q ss_pred cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..+ +.++ .+++|+.|+|++|.|+.+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 60 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL-SLSKLRILIISHNRIQYL 60 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT-TCTTCCEEECCSSCCCEE
T ss_pred ccccEEECCCCcccccChhhcc-ccccccEEecCCCccCCc
Confidence 3455555555555444 2333 445555555555555443
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=82.39 E-value=0.05 Score=37.71 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=7.1
Q ss_pred cchhhhhhhhcCCccc
Q psy5414 43 CKHLRILLLHSNIISK 58 (62)
Q Consensus 43 CrnLkiLyLQnN~I~k 58 (62)
+++|+.|+|.+|.|+.
T Consensus 241 l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSL 256 (452)
T ss_dssp CTTCCEEECTTSCCCE
T ss_pred ccCCCEEEeCCCcCce
Confidence 3444444444444433
No 59
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=82.35 E-value=0.056 Score=35.96 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=6.3
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|.+|.|+
T Consensus 123 l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 123 LGELQELYLKGNELK 137 (290)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 344444444444433
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=82.32 E-value=0.052 Score=35.10 Aligned_cols=15 Identities=27% Similarity=0.261 Sum_probs=6.2
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|.+|.|+
T Consensus 156 l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 156 LTSLKELRLYNNQLK 170 (270)
T ss_dssp CTTCCEEECCSSCCS
T ss_pred CcccceeEecCCcCc
Confidence 344444444444333
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=81.91 E-value=0.062 Score=35.52 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=18.1
Q ss_pred ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.|..+ +.++ .|++|+.|+|.+|.|+.
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFS-PLRKLQKLYISKNHLVE 116 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGST-TCTTCCEEECCSSCCCS
T ss_pred CCCCcEEECCCCccCccCHhHhh-CcCCCCEEECCCCcCCc
Confidence 34455555554444444 2233 44555555555555443
No 62
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=81.30 E-value=0.031 Score=35.34 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=7.5
Q ss_pred hcchhhhhhhhc-CCccc
Q psy5414 42 WCKHLRILLLHS-NIISK 58 (62)
Q Consensus 42 ~CrnLkiLyLQn-N~I~k 58 (62)
.|++|+.|+|++ |.|+.
T Consensus 78 ~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SCTTCCEEEEEEETTCCE
T ss_pred CCcCCcEEECCCCCCeeE
Confidence 344444444444 44443
No 63
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=81.07 E-value=0.056 Score=32.72 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=19.8
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+.+
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFD-KLTQLKELALDTNQLKSV 115 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred CCccCEEECCCCCccccCHHHhh-CCcccCEEECcCCcceEe
Confidence 4455555555555544432 22 345555566655555443
No 64
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=80.84 E-value=0.075 Score=35.40 Aligned_cols=40 Identities=33% Similarity=0.541 Sum_probs=29.2
Q ss_pred ccchh-hhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414 20 IGTLE-EIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 20 l~~Le-el~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien 61 (62)
+.+|+ ++.|.. .+..|+ ... .|++|+.|+|.+|.|+.|+.
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFM-GCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTT-TCTTEEEEEECSSCCCEECT
T ss_pred ChhccEEEEEcc-cceEEchhhhh-CCccCCEEEeCCCccCccch
Confidence 34577 777777 777775 244 78888888888888887764
No 65
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=80.64 E-value=0.13 Score=38.22 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=17.9
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|+.++|+.-.|..|..++ .+++|+.|+|.+|.|+.
T Consensus 485 l~~L~~L~Ls~N~l~~lp~l~-~l~~L~~L~Ls~N~l~~ 522 (567)
T 1dce_A 485 LRCLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQ 522 (567)
T ss_dssp CTTCCEEECCSSCCCCCGGGT-TCSSCCEEECCSSCCCS
T ss_pred CCCCCEEECCCCCCCCCcccC-CCCCCcEEECCCCCCCC
Confidence 344444455444444444343 34455555555554443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=80.61 E-value=0.052 Score=35.94 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=18.6
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.|..|.. ...++|+.|+|.+|.|+.
T Consensus 252 l~~L~~L~Ls~N~l~~ip~--~~~~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVPK--GLPAKLSVLDLSYNRLDR 288 (312)
T ss_dssp CTTCCEEECTTSCCSSCCS--SCCSEEEEEECCSSCCCS
T ss_pred cCCCCEEECCCCccChhhh--hccCCceEEECCCCCCCC
Confidence 3556666665555554421 011555555555555544
No 67
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=80.53 E-value=0.074 Score=36.67 Aligned_cols=14 Identities=43% Similarity=0.361 Sum_probs=6.0
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|.+|.|
T Consensus 79 l~~L~~L~L~~n~l 92 (477)
T 2id5_A 79 LFNLRTLGLRSNRL 92 (477)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CccCCEEECCCCcC
Confidence 34444444444443
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=80.43 E-value=0.072 Score=34.21 Aligned_cols=15 Identities=40% Similarity=0.310 Sum_probs=7.0
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|.+|.|+
T Consensus 148 l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 444444444444443
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=80.37 E-value=0.062 Score=35.39 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=21.6
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|.. .++++|+.|+|.+|.|+.+
T Consensus 251 ~~L~~L~Ls~N~l~~lp~--~~~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPK--GLPAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp TTCCCEECCSSCCCSCCS--CCCSCCSCEECCSCCCCSC
T ss_pred CcCCEEECCCCCCCchhh--hhcCCCCEEECCCCcCCCC
Confidence 466666666666655422 1346666666666666543
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=80.14 E-value=0.12 Score=39.31 Aligned_cols=38 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~k 58 (62)
+..|++|+|+.-.|..|- .++ .+++|+.|+|.+|.|+.
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIK-NLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGG-GGTTCCEEECTTSCCSS
T ss_pred CCCCCEEEeeCCcCcccChhhh-CCCCCCEEeCcCCcCCc
Confidence 444555555554444442 233 44555555555555443
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=80.14 E-value=0.08 Score=34.84 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=17.2
Q ss_pred cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+ +.++ .|++|+.|+|.+|.|+.
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~ 114 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFA-PLVKLERLYLSKNQLKE 114 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCSB
T ss_pred CCCCEEECCCCcCCeeCHHHhc-CCCCCCEEECCCCcCCc
Confidence 4445555554444444 1233 44555555555554443
No 72
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=80.04 E-value=0.076 Score=36.05 Aligned_cols=15 Identities=33% Similarity=0.321 Sum_probs=6.4
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
|++|+.|+|++|.|+
T Consensus 346 l~~L~~L~Ls~N~l~ 360 (455)
T 3v47_A 346 LDKLEVLDLSYNHIR 360 (455)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cccCCEEECCCCccc
Confidence 344444444444443
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=79.99 E-value=0.066 Score=34.54 Aligned_cols=14 Identities=43% Similarity=0.524 Sum_probs=5.9
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
+++|+.|+|.+|.|
T Consensus 152 l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 152 LGNLTHLFLHGNRI 165 (285)
T ss_dssp CTTCCEEECCSSCC
T ss_pred CCCccEEECCCCcc
Confidence 34444444444443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=79.86 E-value=0.06 Score=35.79 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=24.4
Q ss_pred ccccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+.+|+.++|+.-.|..+...-..+++|+.|+|++|.|+.+
T Consensus 74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l 115 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115 (290)
T ss_dssp SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCccc
Confidence 344556666666555555543222566777777777776655
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=79.71 E-value=0.079 Score=36.59 Aligned_cols=37 Identities=32% Similarity=0.429 Sum_probs=15.6
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..|. .++ .|++|+.|+|.+|.|+.
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFN-GLANLNTLELFDNRLTT 126 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGT-TCSSCCEEECCSSCCSS
T ss_pred CCCCEEECCCCcCCccChhhcc-CCccCCEEECCCCcCCe
Confidence 34444444444444332 222 34444444444444443
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=79.63 E-value=0.099 Score=36.33 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=22.0
Q ss_pred ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+..|++++|+.-.|..+ +.++ .+++|+.|+|.+|.|+.|
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFK-FNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGT-TCTTCCEEECCSSCCCEE
T ss_pred cccccEEecCCCccCCcChHHhh-cccCCCEEecCCCceeec
Confidence 45566666666555555 2344 456666666666665544
No 77
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=79.54 E-value=0.09 Score=36.53 Aligned_cols=14 Identities=43% Similarity=0.328 Sum_probs=6.0
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|.+|.|
T Consensus 148 l~~L~~L~l~~n~l 161 (570)
T 2z63_A 148 LTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTCCEEECTTSCC
T ss_pred cCCCCEEeCcCCcc
Confidence 34444444444443
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=79.37 E-value=0.055 Score=35.89 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=6.2
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
+++|+.|+|++|.|+
T Consensus 213 l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 213 AAGVTWISLRNNKLV 227 (317)
T ss_dssp GTTCSEEECTTSCCC
T ss_pred cCcccEEECcCCccc
Confidence 344444444444433
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=79.23 E-value=0.15 Score=34.34 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=26.3
Q ss_pred cccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 19 EIGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+.+|++++|+.-.|..+. .+. .+++|+.|+|.+|.|+.+
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~-~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCC
T ss_pred CCCCCCEEECCCCcceecCcccc-ccCcCCEEECCCCcccee
Confidence 3566777777766666664 344 567777777777777654
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=79.14 E-value=0.22 Score=32.38 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=21.7
Q ss_pred ccchhhhhcchhhHHh--HHhHHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQEHIEK--IEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~--Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
+.+|++++|+.-.+.. +..+-..|++|+.|+|.+|.++
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 131 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence 3566666666655533 3333336667777776666554
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=78.26 E-value=0.098 Score=36.25 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=16.2
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
..|++++|+.-.|..|. .++ .+++|+.|+|.+|.|+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~ 137 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFN-GLASLNTLELFDNWLTV 137 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSB
T ss_pred CCCCEEECCCCccCCcChhhcc-CcccCCEEECCCCcCCc
Confidence 34444444444444432 222 34445555555554443
No 82
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=78.19 E-value=0.11 Score=34.40 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=25.9
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.... .+++|+.|+|++|.|+.+
T Consensus 168 l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp TTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE
T ss_pred cCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc
Confidence 466777777776666665444 467777777777777654
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=78.07 E-value=0.087 Score=33.95 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=21.8
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ki 59 (62)
..+|++++|+.-.|..+. .+. .|++|+.|+|.+|.|+.+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~l~~~ 71 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNVLARI 71 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCcccee
Confidence 345566666665555553 243 556666666666655544
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=77.81 E-value=0.12 Score=34.12 Aligned_cols=39 Identities=31% Similarity=0.517 Sum_probs=22.4
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..|. .+. .|++|+.|+|++|.|+.+
T Consensus 240 l~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 240 LPTLRELHLDNNKLSRVPAGLP-DLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTGG-GCTTCCEEECCSSCCCBC
T ss_pred CCCCCEEECCCCcCeecChhhh-cCccCCEEECCCCCCCcc
Confidence 445666666655555553 244 556666666666666554
No 85
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=77.81 E-value=0.11 Score=34.92 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=20.7
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~k 58 (62)
+..|++++|+.-.|..|. .++ .|++|+.|+|.+|.|+.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~-~l~~L~~L~Ls~n~l~~ 141 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQ-QFAGLETLTLARNPLRA 141 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGG-GGTTCSEEEEESCCCCC
T ss_pred CCCCCEEECCCCCccchhHHHh-ccCCCCEEECCCCcccc
Confidence 445555556555555443 243 55666666666665553
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=77.80 E-value=0.09 Score=33.94 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=24.8
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|.+|.|+.+
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCC
T ss_pred CcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcC
Confidence 4566677776666665542 33 567777777777776654
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=77.56 E-value=0.11 Score=36.71 Aligned_cols=14 Identities=43% Similarity=0.529 Sum_probs=5.7
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|.+|.|
T Consensus 79 l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 79 LHHLSNLILTGNPI 92 (606)
T ss_dssp CTTCCEEECTTCCC
T ss_pred hhhcCEeECCCCcc
Confidence 34444444444433
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=77.20 E-value=0.13 Score=36.56 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..+. .++ .+++|+.|+|++|.|+.+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 91 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNRIRSL 91 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCCCCEE
T ss_pred CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCCCCcC
Confidence 45555555555555552 344 455566666665555544
No 89
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=77.05 E-value=0.11 Score=32.37 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred cchhhhhcchhhHHhHHh---HHHhcchhhhhhhhcCCccccc
Q psy5414 21 GTLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~---l~~~CrnLkiLyLQnN~I~kie 60 (62)
.+++++.|+.-.|..+.. ++ ..++|+.|+|.+|.|+.+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~ 70 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFG-RLPHLVKLELKRNQLTGIE 70 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGG-GCTTCCEEECCSSCCCCBC
T ss_pred CCCCEEECCCCcCCccCCccccc-cCCCCCEEECCCCCCCCcC
Confidence 378888998888887753 55 7889999999999998763
No 90
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=76.53 E-value=0.12 Score=33.44 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=5.1
Q ss_pred chhhhhhhhcCCc
Q psy5414 44 KHLRILLLHSNII 56 (62)
Q Consensus 44 rnLkiLyLQnN~I 56 (62)
++|+.|+|.+|.|
T Consensus 223 ~~L~~L~L~~N~l 235 (306)
T 2z66_A 223 NSLQVLDYSLNHI 235 (306)
T ss_dssp TTCCEEECTTSCC
T ss_pred ccCCEeECCCCCC
Confidence 3334444444433
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=76.22 E-value=0.11 Score=36.11 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=16.2
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNPIQ 89 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCC
T ss_pred CCceEEECCCCcCCccCccccc-CchhCCEEeCcCCcCC
Confidence 34444455444444442 133 3445555555555443
No 92
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=75.82 E-value=0.12 Score=37.12 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=6.2
Q ss_pred cchhhhhhhhcCCcc
Q psy5414 43 CKHLRILLLHSNIIS 57 (62)
Q Consensus 43 CrnLkiLyLQnN~I~ 57 (62)
|++|+.|+|.+|.|+
T Consensus 72 l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 72 LPMLKVLNLQHNELS 86 (680)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred ccCcCEEECCCCccC
Confidence 344444444444333
No 93
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=75.81 E-value=0.13 Score=36.34 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=26.2
Q ss_pred cccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccccc
Q psy5414 19 EIGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~kie 60 (62)
.+.+|++++|+.-.|..+ +.++ .|++|+.|+|.+|.|+.+.
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFS-GLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSST-TCTTCCEEECTTSCCCCSS
T ss_pred chhhcCEeECCCCcccccChhhcC-CcccCCEEEccCCcccccc
Confidence 356677777766666665 2354 6777777777777766543
No 94
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=75.81 E-value=0.17 Score=34.09 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=16.0
Q ss_pred cchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+ +.+. .+++|+.|+|.+|.|+.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA 286 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSSCCCE
T ss_pred CCccEEECCCCcCCCcChhHcc-ccccCCEEECCCCcCcc
Confidence 3444444444444433 2233 34445555555554443
No 95
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=75.79 E-value=0.2 Score=33.99 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=4.9
Q ss_pred chhhhhhhhcCCc
Q psy5414 44 KHLRILLLHSNII 56 (62)
Q Consensus 44 rnLkiLyLQnN~I 56 (62)
++|+.|+|.+|.|
T Consensus 129 ~~L~~L~L~~n~l 141 (455)
T 3v47_A 129 TSLEMLVLRDNNI 141 (455)
T ss_dssp TTCCEEECCSSBC
T ss_pred ccCCEEECCCCcc
Confidence 3333333333333
No 96
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=75.56 E-value=0.14 Score=34.43 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=21.4
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..|. .++ .|++|+.|+|.+|.|+.+
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCC
T ss_pred CCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcC
Confidence 455666666555555442 343 456666666666665543
No 97
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=75.55 E-value=0.14 Score=36.50 Aligned_cols=38 Identities=18% Similarity=0.300 Sum_probs=21.0
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+.+|++++|+.-.|..+. ++ .+++|+.|+|.+|.|+.
T Consensus 62 ~l~~L~~L~Ls~n~l~~~~-~~-~l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTLD-LS-QNTNLTYLACDSNKLTN 99 (457)
T ss_dssp GCTTCSEEECCSSCCSCCC-CT-TCTTCSEEECCSSCCSC
T ss_pred ccCCCCEEEccCCcCCeEc-cc-cCCCCCEEECcCCCCce
Confidence 3455666666655555553 44 45566666666665544
No 98
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=75.17 E-value=0.13 Score=33.86 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred cchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..+. .+. .|++|+.|+|.+|.|+.+
T Consensus 240 ~~L~~L~L~~N~l~~lp~~l~-~l~~L~~L~l~~N~i~~~ 278 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAI 278 (330)
T ss_dssp TTCCEEECCSSCCSSCCTTTT-TCSSCCEEECCSSCCCCC
T ss_pred CCCCEEECCCCcCccCChhhc-cCCCcCEEECCCCcCCcc
Confidence 34555555554444442 233 455555555555555544
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=75.15 E-value=0.27 Score=34.13 Aligned_cols=16 Identities=25% Similarity=0.165 Sum_probs=8.0
Q ss_pred hcchhhhhhhhcCCcc
Q psy5414 42 WCKHLRILLLHSNIIS 57 (62)
Q Consensus 42 ~CrnLkiLyLQnN~I~ 57 (62)
.+++|+.|+|.+|.|+
T Consensus 385 ~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 385 TLKNLTSLDISRNTFH 400 (549)
T ss_dssp GCTTCCEEECTTCCCC
T ss_pred cCCCCCEEECCCCCCc
Confidence 3455555555555444
No 100
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=75.13 E-value=0.14 Score=36.10 Aligned_cols=37 Identities=35% Similarity=0.348 Sum_probs=16.2
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
.+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+.
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~-~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLH-NQKTLESLYLGSNHISS 143 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCT-TCTTCCEEECCSSCCCC
T ss_pred ccccEeeccccCcccCCcchhc-cCCcccEEECCCCcccc
Confidence 44444444444444431 232 44444555555444443
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=75.10 E-value=0.4 Score=32.28 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=18.7
Q ss_pred ccchhhhhcchhhHHh-----HH-hHHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQEHIEK-----IE-ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~-----Ie-~l~~~CrnLkiLyLQnN~I~ 57 (62)
..+|++++|+.-.|.. +. .+...|++|+.|+|++|.|+
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 3445555555444433 32 23224556666666666554
No 102
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=74.94 E-value=0.43 Score=32.09 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=6.1
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
|++|+.|+|++|.|
T Consensus 243 ~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 243 WPNLRELGLNDCLL 256 (386)
T ss_dssp CTTCCEEECTTCCC
T ss_pred CCCcCEEECCCCCC
Confidence 34444444444443
No 103
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=74.66 E-value=0.15 Score=35.50 Aligned_cols=38 Identities=11% Similarity=0.271 Sum_probs=20.8
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.=.|..|.... .+++|+.|+|.+|.|+.
T Consensus 450 l~~L~~L~Ls~N~l~~ip~~~-~l~~L~~L~Ls~N~l~~ 487 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPDAS-LFPVLLVMKISRNQLKS 487 (549)
T ss_dssp CTTCCEEECCSSCCSSCCCGG-GCTTCCEEECCSSCCCC
T ss_pred CChhcEEECCCCccCcCCCcc-cCccCCEEecCCCccCC
Confidence 445555555555555554433 45566666666665544
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=74.18 E-value=0.27 Score=37.34 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=19.1
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~k 58 (62)
+..|+.|+|+.-.|..|. .+. .+++|+.|+|.+|.|+.
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~ 261 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTE 261 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSC
T ss_pred CCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcc
Confidence 344555555555554442 233 45555555555555543
No 105
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=74.00 E-value=0.38 Score=31.70 Aligned_cols=40 Identities=25% Similarity=0.227 Sum_probs=20.9
Q ss_pred cccchhhhhcchhhHHhHHh----HHHhcchhhhhhhhcCCccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEA----LDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~----l~~~CrnLkiLyLQnN~I~k 58 (62)
.+.+|++++|+.-.|..+.. +...+++|+.|+|.+|.|+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 34556666666555553322 21234566666666665544
No 106
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=73.93 E-value=0.15 Score=35.07 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=34.0
Q ss_pred cccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccccc
Q psy5414 19 EIGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kie 60 (62)
.-.++++++|+.-.|..+. .+. .|++|+.|+|++|.|+.+.
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~ 72 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVE 72 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEEC
T ss_pred CCCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeC
Confidence 4467889999998888883 566 7999999999999998763
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=73.84 E-value=0.69 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=18.2
Q ss_pred chhhhhcchhhH----HhHHhHHHhcchhhhhhhhcCC
Q psy5414 22 TLEEIALHQEHI----EKIEALDKWCKHLRILLLHSNI 55 (62)
Q Consensus 22 ~Leel~lhq~~I----e~Ie~l~~~CrnLkiLyLQnN~ 55 (62)
+|++++|+.-.+ ..+..+-..|++|+.|+|.+|.
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 566666655422 3343333356666666666665
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=73.78 E-value=0.58 Score=31.47 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=17.1
Q ss_pred chhhhhcchhhHHh-----HH-hHHHhcchhhhhhhhcCCcc
Q psy5414 22 TLEEIALHQEHIEK-----IE-ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 22 ~Leel~lhq~~Ie~-----Ie-~l~~~CrnLkiLyLQnN~I~ 57 (62)
+|++++|+.=.|.. +. .+...|++|+.|+|.+|.|+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 45555555444444 21 23323445555555555554
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=73.31 E-value=0.18 Score=35.86 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=22.2
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+. .++ .+++|+.|+|.+|.|+.|
T Consensus 75 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 115 (562)
T 3a79_B 75 LSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDVSHNRLQNI 115 (562)
T ss_dssp CTTCCEEECCSCCCCEECTTTTT-TCTTCCEEECTTSCCCEE
T ss_pred CCCccEEECCCCCCCcCCHHHhC-CCCCCCEEECCCCcCCcc
Confidence 455666666665555552 244 456666666666666544
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=73.12 E-value=0.088 Score=33.19 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=15.0
Q ss_pred cchhhhhcch-hhHHhHH--hHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQ-EHIEKIE--ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq-~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|+++.|+. -.|..|. .++ .|++|+.|+|.+|.|+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~-~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALK-ELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEE-CCTTCCEEEEEEECCC
T ss_pred cCCcEEECCCCCCeeEcCHHHhC-CCCCCCEEeCCCCCCc
Confidence 3444444444 3444332 122 3444444444444443
No 111
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=73.07 E-value=0.17 Score=35.73 Aligned_cols=36 Identities=22% Similarity=0.178 Sum_probs=15.7
Q ss_pred cchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTANPLI 94 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTTCCCS
T ss_pred ccceEEECCCCccceeChhhcc-CccccCeeeCCCCccc
Confidence 34444444444444432 133 4444444444444443
No 112
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=71.99 E-value=1.2 Score=29.58 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=21.2
Q ss_pred hhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 23 LEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 23 Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
|..+.+....+..|- .++ .|++|+.|+|.+|.|+.+
T Consensus 256 L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLKSV 292 (353)
T ss_dssp EESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCCCC
T ss_pred cccccccCcchhhhHHHHh-cccCCCEEECCCCCCCcc
Confidence 333444444444443 244 677788888888777655
No 113
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=70.97 E-value=0.26 Score=31.93 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=5.7
Q ss_pred cchhhhhhhhcCCc
Q psy5414 43 CKHLRILLLHSNII 56 (62)
Q Consensus 43 CrnLkiLyLQnN~I 56 (62)
+++|+.|+|.+|.|
T Consensus 51 l~~L~~L~L~~n~l 64 (306)
T 2z66_A 51 LTQLTKLSLSSNGL 64 (306)
T ss_dssp CTTCSEEECCSSCC
T ss_pred cccCCEEECCCCcc
Confidence 34444444444433
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=70.97 E-value=0.63 Score=31.30 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=21.1
Q ss_pred chhhhhcchhhHHhH--HhHHHh----cchhhhhhhhcCCccc
Q psy5414 22 TLEEIALHQEHIEKI--EALDKW----CKHLRILLLHSNIISK 58 (62)
Q Consensus 22 ~Leel~lhq~~Ie~I--e~l~~~----CrnLkiLyLQnN~I~k 58 (62)
+|++++|+.-.|... ..+... |++|+.|+|.+|.|+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 566666666555542 223322 4667777777776653
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=69.75 E-value=0.83 Score=31.93 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=22.1
Q ss_pred ccchhhhhcchhhH-----HhHHhHHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQEHI-----EKIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~~I-----e~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
+.+|++++|+.-.+ +.+..+-..|++|+.|.|.+|.+.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 34555555554333 345555556777777777776654
No 116
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=69.66 E-value=0.43 Score=34.31 Aligned_cols=39 Identities=26% Similarity=0.511 Sum_probs=24.3
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+..|++++|+.-.|..|.. ++ .|++|+.|+|.+|.|+.+
T Consensus 72 l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~ 112 (680)
T 1ziw_A 72 LPMLKVLNLQHNELSQLSDKTFA-FCTNLTELHLMSNSIQKI 112 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCC
T ss_pred ccCcCEEECCCCccCccChhhhc-cCCCCCEEECCCCccCcc
Confidence 4556666666655655542 44 667777777777766654
No 117
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=69.26 E-value=0.68 Score=32.28 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=22.9
Q ss_pred ccchhhhhcchh-hHH--hHHhHHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQE-HIE--KIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~-~Ie--~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
+.+|++++|+.= .+. .+..+...|++|+.|+|.+|.|+
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEE
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccC
Confidence 456666666532 222 24455557788888888777654
No 118
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=68.84 E-value=0.4 Score=33.21 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=32.5
Q ss_pred cccchhhhhcchhhHHhHHhHHHhcc-hhhhhhhhcCCccc
Q psy5414 19 EIGTLEEIALHQEHIEKIEALDKWCK-HLRILLLHSNIISK 58 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie~l~~~Cr-nLkiLyLQnN~I~k 58 (62)
.+.+|+.++|+.-.|..++.++.+-. +|+.|+|.+|.|+.
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 57789999999988888877774322 89999999999863
No 119
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.74 E-value=0.17 Score=36.25 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=18.8
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.|..+. .+...+++|+.|+|++|.|+.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 445555555555444431 222234555555555555543
No 120
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.38 E-value=0.14 Score=36.59 Aligned_cols=38 Identities=24% Similarity=0.331 Sum_probs=23.9
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~k 58 (62)
..+|++++|+.-.|..+. .++ .|++|+.|+|.+|.|+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 72 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYE 72 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCC
Confidence 346677777766666653 354 66677777777776653
No 121
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=68.32 E-value=1.2 Score=27.81 Aligned_cols=15 Identities=13% Similarity=-0.181 Sum_probs=7.4
Q ss_pred hcchhhhhhhhcCCc
Q psy5414 42 WCKHLRILLLHSNII 56 (62)
Q Consensus 42 ~CrnLkiLyLQnN~I 56 (62)
.|+.|+.|+|++|.|
T Consensus 149 ~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 149 KNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HCSSCCEEECCCSSH
T ss_pred hCCCcCEEeccCCCC
Confidence 344455555555544
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=67.94 E-value=0.75 Score=32.06 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=8.2
Q ss_pred hcchhhhhhhhcCCc
Q psy5414 42 WCKHLRILLLHSNII 56 (62)
Q Consensus 42 ~CrnLkiLyLQnN~I 56 (62)
.|++|+.|+|.+|.+
T Consensus 479 ~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 479 GCDSLRKLEIRDCPF 493 (594)
T ss_dssp HCTTCCEEEEESCSC
T ss_pred cCCCcCEEECcCCCC
Confidence 455555555555554
No 123
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.85 E-value=0.94 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=15.0
Q ss_pred chhhhhhhhcCCccccc
Q psy5414 44 KHLRILLLHSNIISKLG 60 (62)
Q Consensus 44 rnLkiLyLQnN~I~kie 60 (62)
.+|+.|+|++|.|+.|.
T Consensus 31 ~~l~~L~Ls~N~l~~l~ 47 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP 47 (130)
T ss_dssp TTCSEEECTTSCCSSCC
T ss_pred cCCCEEECCCCcCCccC
Confidence 57899999999999875
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=67.84 E-value=0.28 Score=37.11 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=5.0
Q ss_pred chhhhhhhhcCCc
Q psy5414 44 KHLRILLLHSNII 56 (62)
Q Consensus 44 rnLkiLyLQnN~I 56 (62)
++|+.|+|.+|.|
T Consensus 241 ~~L~~L~Ls~N~L 253 (622)
T 3g06_A 241 SELKELMVSGNRL 253 (622)
T ss_dssp TTCCEEECCSSCC
T ss_pred CcCcEEECCCCCC
Confidence 3333333333333
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=67.09 E-value=0.18 Score=33.94 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.0
Q ss_pred ccchhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcc
Q psy5414 20 IGTLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~ 57 (62)
-.+++++.|+.-.|..|. .++ .+++|+.|+|.+|.|.
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFS-GFGDLEKIEISQNDVL 67 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSST-TCTTCCEEEEECCTTC
T ss_pred CCCCCEEEccCCcCCCcCHHHHc-CCCCCCEEECcCCCCC
Confidence 357889999998888885 355 7899999999999874
No 126
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=66.50 E-value=0.63 Score=32.52 Aligned_cols=10 Identities=40% Similarity=0.285 Sum_probs=3.7
Q ss_pred hhhhhhhhcC
Q psy5414 45 HLRILLLHSN 54 (62)
Q Consensus 45 nLkiLyLQnN 54 (62)
+|+.|+|.+|
T Consensus 127 ~L~~L~Ls~n 136 (372)
T 3un9_A 127 RARKLGLQLN 136 (372)
T ss_dssp TEEEEECCSS
T ss_pred hccHhhcCCC
Confidence 3333333333
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=65.74 E-value=0.97 Score=30.52 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=6.6
Q ss_pred hhhhhhhhcCCcc
Q psy5414 45 HLRILLLHSNIIS 57 (62)
Q Consensus 45 nLkiLyLQnN~I~ 57 (62)
+|+.|+|.+|.|+
T Consensus 86 ~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 86 KIQKLSLQNCCLT 98 (461)
T ss_dssp CCCEEECTTSCCB
T ss_pred ceeEEEccCCCCC
Confidence 4555555555444
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=65.38 E-value=0.33 Score=36.53 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=18.0
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|+.++|+.-.|..|. ..+++|+.|+|++|.|+.|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~i 115 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTL 115 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCc
Confidence 34555555554444443 2455555555555555443
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=65.17 E-value=0.25 Score=35.12 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=21.7
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|..++ .+++|+.|+|.+|.|+.+
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~-~l~~L~~L~l~~N~l~~l 168 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQ-NSSFLKIIDVDNNSLKKL 168 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCT-TCTTCCEEECCSSCCSCC
T ss_pred CCCCEEECcCCCCCCCcccC-CCCCCCEEECCCCcCccc
Confidence 35555666555555554444 556666666666666543
No 130
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=63.02 E-value=0.82 Score=30.90 Aligned_cols=39 Identities=21% Similarity=0.176 Sum_probs=25.8
Q ss_pred cccchhhhhcchhhHH-----hHHh-HHHhcchhhhhhhhcCCccc
Q psy5414 19 EIGTLEEIALHQEHIE-----KIEA-LDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie-----~Ie~-l~~~CrnLkiLyLQnN~I~k 58 (62)
.+.+|++++|+.-.|. .+.. +. .|++|+.|+|.+|.|+.
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~ 70 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGD 70 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCCh
Confidence 3456777777765555 3332 33 57888888888887753
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=62.19 E-value=0.3 Score=34.70 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=25.4
Q ss_pred ccchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
..+|++++|+.-.+..+..++ .+++|+.|+|.+|.|+.+
T Consensus 172 ~~~L~~L~L~~n~l~~l~~~~-~l~~L~~L~l~~N~l~~l 210 (454)
T 1jl5_A 172 PPSLEFIAAGNNQLEELPELQ-NLPFLTAIYADNNSLKKL 210 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCT-TCTTCCEEECCSSCCSSC
T ss_pred cccccEEECcCCcCCcCcccc-CCCCCCEEECCCCcCCcC
Confidence 346677777666666655555 667777777777776654
No 132
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.07 E-value=0.53 Score=34.06 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=18.7
Q ss_pred ccchhhhhcchhhHHhH--HhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKI--EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I--e~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.|..+ ..++ .|++|+.|+|.+|.|+.
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 292 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVA 292 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTTSCCCE
T ss_pred CCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCCCCCCC
Confidence 34455555555444444 2333 45555555555555544
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=61.55 E-value=0.44 Score=36.03 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=17.8
Q ss_pred cchhhhhcchhhHHhHHhHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|.. .+++|+.|+|++|.|+.|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~l 96 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSL 96 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCC
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcC
Confidence 345555555554443332 345555555555555443
No 134
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.47 E-value=0.66 Score=33.53 Aligned_cols=39 Identities=31% Similarity=0.376 Sum_probs=24.7
Q ss_pred ccchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.+..|. .++ .+++|+.|+|.+|.|+.+
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~~-~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGHH-HHTTCSEEECCSSCCCCC
T ss_pred CCCCcEEECCCCCCCccCcccc-cCCCCCEEECCCCCCCCc
Confidence 556667777666666553 344 567777777777776543
No 135
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=58.88 E-value=0.79 Score=34.69 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=30.6
Q ss_pred ccchhhhhcchhhHHhHHh--HHHhcchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEHIEKIEA--LDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~Ie~--l~~~CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-.|..+.. ++ .+++|+.|+|++|.|+.+
T Consensus 479 l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 479 LSHLQVLYLNHNYLNSLPPGVFS-HLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp BCCEECCCCCHHHHTTCCTTSSS-SCCSCSEEEEESCCCSSC
T ss_pred cccccEEECCCCcccccChhHcc-chhhhheeECCCCCCCcc
Confidence 5788888898888887743 44 678899999999988765
No 136
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=58.76 E-value=1 Score=31.78 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=22.7
Q ss_pred cccchhhhhcchhhHHhHH--hHH---HhcchhhhhhhhcCCcc
Q psy5414 19 EIGTLEEIALHQEHIEKIE--ALD---KWCKHLRILLLHSNIIS 57 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~Ie--~l~---~~CrnLkiLyLQnN~I~ 57 (62)
.+.+|++++|+.-.|...+ .|. ..|++|+.|.|++|.|+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4566777777655544422 121 25677777777777665
No 137
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=58.57 E-value=0.78 Score=33.69 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=26.8
Q ss_pred cchhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 21 GTLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
.+|++++|+.-.|..|. .+...|++|+.|+|.+|.|+.|
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i 472 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence 46777777777776664 3443577888888888877754
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=57.91 E-value=1.1 Score=31.23 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=6.1
Q ss_pred hcchhhhhhhh
Q psy5414 42 WCKHLRILLLH 52 (62)
Q Consensus 42 ~CrnLkiLyLQ 52 (62)
.|++|+.|+|.
T Consensus 316 ~~~~L~~L~L~ 326 (592)
T 3ogk_B 316 KCPNLEVLETR 326 (592)
T ss_dssp TCTTCCEEEEE
T ss_pred hCcCCCEEecc
Confidence 45555555555
No 139
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=55.25 E-value=0.7 Score=33.96 Aligned_cols=40 Identities=10% Similarity=0.255 Sum_probs=21.6
Q ss_pred ccchhhhhcchhh-HHh--H-HhHHHh-----cchhhhhhhhcCCcccc
Q psy5414 20 IGTLEEIALHQEH-IEK--I-EALDKW-----CKHLRILLLHSNIISKL 59 (62)
Q Consensus 20 l~~Leel~lhq~~-Ie~--I-e~l~~~-----CrnLkiLyLQnN~I~ki 59 (62)
+.+|++++|+.-. +.. | +.++.. |++|+.|+|++|.|+.|
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 4566666666554 432 2 234433 46666666666666543
No 140
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=54.56 E-value=0.74 Score=34.82 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=21.5
Q ss_pred ccchhhhhcchhhHHhH---HhHHHhcchhhhhhhhcCCccc
Q psy5414 20 IGTLEEIALHQEHIEKI---EALDKWCKHLRILLLHSNIISK 58 (62)
Q Consensus 20 l~~Leel~lhq~~Ie~I---e~l~~~CrnLkiLyLQnN~I~k 58 (62)
+.+|++++|+.-.+..+ ..++ .|++|+.|+|.+|.|+.
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~-~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFG-KLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGG-TCSSCCEEEEESSCCCC
T ss_pred cCCCCEEECCCCcccccccchhHh-hCCCCCEEECCCCcCCe
Confidence 45566666665555444 2244 56666666666666543
No 141
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=54.13 E-value=0.66 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=16.0
Q ss_pred cchhhhhcchhhHHh-H-HhHHHhcchhhhhhhhcCCcc
Q psy5414 21 GTLEEIALHQEHIEK-I-EALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 21 ~~Leel~lhq~~Ie~-I-e~l~~~CrnLkiLyLQnN~I~ 57 (62)
.+|++++|+.-.|.. + +.++ .+++|+.|+|.+|.|+
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~ 162 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRIS 162 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCE
T ss_pred CCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCccc
Confidence 444444444444431 2 1233 3455555555555443
No 142
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=51.86 E-value=0.59 Score=37.08 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=18.5
Q ss_pred chhhhhcchhhHHhHHh---HHHhcchhhhhhhhcCCcc
Q psy5414 22 TLEEIALHQEHIEKIEA---LDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 22 ~Leel~lhq~~Ie~Ie~---l~~~CrnLkiLyLQnN~I~ 57 (62)
+|++++|+.-.+..|.. ++ .+++|+.|+|.+|.|+
T Consensus 549 ~L~~L~Ls~N~L~~ip~~~~l~-~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 549 KIQIFYMGYNNLEEFPASASLQ-KMVKLGLLDCVHNKVR 586 (876)
T ss_dssp TCCEEECCSSCCCBCCCHHHHT-TCTTCCEEECTTSCCC
T ss_pred CccEEEeeCCcCCccCChhhhh-cCCCCCEEECCCCCcc
Confidence 55555555555554432 33 4555555555555554
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=49.93 E-value=1.2 Score=29.47 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=17.8
Q ss_pred chhhhhcchhhHHh--HHhHHHhcchhhhhhhhcC
Q psy5414 22 TLEEIALHQEHIEK--IEALDKWCKHLRILLLHSN 54 (62)
Q Consensus 22 ~Leel~lhq~~Ie~--Ie~l~~~CrnLkiLyLQnN 54 (62)
.|++|+|+.-.|.. +.+|. -|++|+.|.|.++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCC
Confidence 46666666555533 23454 5666666666654
No 144
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=49.62 E-value=1.1 Score=33.42 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=26.9
Q ss_pred ccccchhhhhcchhhHH----hHHhHHHhcchhhhhhhhcCCcc
Q psy5414 18 KEIGTLEEIALHQEHIE----KIEALDKWCKHLRILLLHSNIIS 57 (62)
Q Consensus 18 ~~l~~Leel~lhq~~Ie----~Ie~l~~~CrnLkiLyLQnN~I~ 57 (62)
+.+++|++++|+.-.+. ..+.++ .|++|+.|+|.+|.++
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~ 139 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLD 139 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGGG-GCTTCCEEECCSSEEE
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHHh-CCCCCCEEECcCCccC
Confidence 44677888888875554 233566 7788888888888664
No 145
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=49.13 E-value=1.6 Score=34.63 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=25.6
Q ss_pred chhhhhcchhhHHhHH-hHHHhcchhhhhhhhcCCcccc
Q psy5414 22 TLEEIALHQEHIEKIE-ALDKWCKHLRILLLHSNIISKL 59 (62)
Q Consensus 22 ~Leel~lhq~~Ie~Ie-~l~~~CrnLkiLyLQnN~I~ki 59 (62)
+|++++|+.-.|..|. .+...|++|+.|+|++|.|+.|
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~i 712 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCC
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCcc
Confidence 6777777776666663 3444677777777777777654
No 146
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=43.33 E-value=0.9 Score=33.98 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=6.4
Q ss_pred ccchhhhhcchhhH
Q psy5414 20 IGTLEEIALHQEHI 33 (62)
Q Consensus 20 l~~Leel~lhq~~I 33 (62)
+.+|++++|+.-.|
T Consensus 150 l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 150 LNSLEVLDLSANSI 163 (768)
T ss_dssp CTTCSEEECCSSCC
T ss_pred CCCCCEEECCCCcc
Confidence 34455555544433
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=39.12 E-value=1.7 Score=30.65 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=27.7
Q ss_pred chhhhhcchhhHHhHH--hHHHhcchhhhhhhhcCCcccccC
Q psy5414 22 TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKLGK 61 (62)
Q Consensus 22 ~Leel~lhq~~Ie~Ie--~l~~~CrnLkiLyLQnN~I~kien 61 (62)
+|+++.|.. .+..|+ ... .|.+|+.+.|.+|.|..|..
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~-~c~~L~~l~l~~n~l~~I~~ 197 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFY-YCYNLKKADLSKTKITKLPA 197 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTT-TCTTCCEEECTTSCCSEECT
T ss_pred CceEEEeCC-CccEehHHHhh-CcccCCeeecCCCcceEech
Confidence 577777775 677775 244 78999999999888777653
No 148
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=28.54 E-value=11 Score=18.73 Aligned_cols=8 Identities=50% Similarity=0.658 Sum_probs=6.4
Q ss_pred hhhhhcCC
Q psy5414 48 ILLLHSNI 55 (62)
Q Consensus 48 iLyLQnN~ 55 (62)
|=|||||.
T Consensus 6 ikylqnni 13 (26)
T 1m45_B 6 IKYLQNNI 13 (26)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 56999985
No 149
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.53 E-value=31 Score=21.11 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=19.8
Q ss_pred hhhhhcchhhHHhHH-hHHHhcchhhhh
Q psy5414 23 LEEIALHQEHIEKIE-ALDKWCKHLRIL 49 (62)
Q Consensus 23 Leel~lhq~~Ie~Ie-~l~~~CrnLkiL 49 (62)
+++|..|+++|++.+ .|..+=.+++-|
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999986 577655555443
No 150
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=27.38 E-value=15 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=14.1
Q ss_pred cccchhhhhcchhhHHhH-HhHHHhcc
Q psy5414 19 EIGTLEEIALHQEHIEKI-EALDKWCK 44 (62)
Q Consensus 19 ~l~~Leel~lhq~~Ie~I-e~l~~~Cr 44 (62)
.+.+++...+.++++++| +.++++|+
T Consensus 86 li~s~e~~~~~deeL~~IL~~l~ky~~ 112 (113)
T 4ayb_F 86 ILIMDSNRTYTSEDIQKIIDIIRKYIK 112 (113)
T ss_dssp TTTTTCCCCCCCTHHHHHHHHC-----
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHhc
Confidence 345666667777777777 45666664
No 151
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=24.36 E-value=30 Score=20.81 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=15.4
Q ss_pred hHHHhcchhhhhhhhcCCccccc
Q psy5414 38 ALDKWCKHLRILLLHSNIISKLG 60 (62)
Q Consensus 38 ~l~~~CrnLkiLyLQnN~I~kie 60 (62)
.|-..+|=.|+|| |+|--|.=|
T Consensus 13 ~Ll~~vRiIkiLy-QSNP~P~p~ 34 (72)
T 3lph_A 13 DSLKAVRLIKFLY-QSNPPPNPE 34 (72)
T ss_dssp HHHHHHHHHHHHH-HTCCCCCCC
T ss_pred HHHHHHHHHHHHH-ccCCCCCCC
Confidence 3555888889999 677655433
No 152
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=21.18 E-value=40 Score=20.09 Aligned_cols=32 Identities=22% Similarity=0.508 Sum_probs=22.6
Q ss_pred CchhhHHHHHhhcccccccccchhhhhcchhhHHhHH-hHH
Q psy5414 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIE-ALD 40 (62)
Q Consensus 1 MvriT~eLirkraEhn~~~l~~Leel~lhq~~Ie~Ie-~l~ 40 (62)
|..||.+.+++ +..|--|.|++++++++. .|+
T Consensus 1 Mm~i~~e~v~~--------iA~LArL~l~eeE~~~~~~~l~ 33 (100)
T 3ip4_C 1 MTKVTREEVEH--------IANLARLQISPEETEEMANTLE 33 (100)
T ss_dssp --CCCHHHHHH--------HHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHH--------HHHHcCCCCCHHHHHHHHHHHH
Confidence 67788888875 557888899999988773 444
Done!