RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5414
         (62 letters)



>gnl|CDD|236321 PRK08645, PRK08645, bifunctional homocysteine
           S-methyltransferase/5,10-methylenetetrahydrofolate
           reductase protein; Reviewed.
          Length = 612

 Score = 26.3 bits (59), Expect = 0.81
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 2   VRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKI 36
           + + E++  +     DKE    E +A+ +E I+  
Sbjct: 543 ITLPEEIRERMRAVEDKEEAREEGVAIARELIDAA 577


>gnl|CDD|153383 cd07371, 2A5CPDO_AB, The alpha and beta subunits of the Class III
           extradiol dioxygenase, 2-amino-5-chlorophenol
           1,6-dioxygenase, which catalyzes the oxidization and
           subsequent ring-opening of 2-amino-5-chlorophenol.  This
           subfamily contains both alpha and beta subunits of
           2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which
           catalyzes the oxidization and subsequent ring-opening of
           2-amino-5-chlorophenol, an intermediate during
           p-chloronitrobenzene degradation. 2A5CPDO is a member of
           the class III extradiol dioxygenase family, a group of
           enzymes which use a non-heme Fe(II) to cleave aromatic
           rings between a hydroxylated carbon and an adjacent
           non-hydroxylated carbon. The active enzyme is probably a
           heterotetramer, composed of two alpha and two beta
           subunits. Alpha and beta subunits share significant
           sequence similarity and may have evolved by gene
           duplication.
          Length = 268

 Score = 24.7 bits (54), Expect = 2.8
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 24  EEIALHQEHIEKIEALDKWCKHLRILLL 51
           EEI   ++HIE  E  DKW  + R+L L
Sbjct: 181 EEIDPPKDHIES-EEGDKW--NRRMLEL 205


>gnl|CDD|240293 PTZ00149, PTZ00149, hypoxanthine phosphoribosyltransferase;
           Provisional.
          Length = 241

 Score = 24.3 bits (53), Expect = 5.2
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 12/54 (22%)

Query: 6   EDLVRKRAEHNDKEIGTLEEIA-----LHQEHIEKIE-------ALDKWCKHLR 47
           E  VR ++  ND+  G LE ++     L  +H+  +E        L K+C++L+
Sbjct: 121 EHYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLK 174


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,251,371
Number of extensions: 245986
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 9
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)