RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5414
(62 letters)
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 47.0 bits (112), Expect = 2e-08
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 1 MVRISEDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
MV+++ +L+ + A++ + E+ L I IE L + N I KL
Sbjct: 1 MVKLTAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 45.8 bits (109), Expect = 5e-08
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 6 EDLVRKRAEHNDKEIGTLEEIALHQEH--IEKIEALDKWCKHLRILLLHSNIISKL 59
+D +R E E++ LH IEK++A K + L L +N I K+
Sbjct: 8 KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63
Score = 28.5 bits (64), Expect = 0.080
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 11 KRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
K+ E+ D TLEE+ + I + ++K +LR+L + +N I+
Sbjct: 83 KKIENLDAVADTLEELWISYNQIASLSGIEK-LVNLRVLYMSNNKITNW 130
Score = 28.1 bits (63), Expect = 0.11
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L ++L + I+KIE LD L L + N I+ L
Sbjct: 72 LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote
in leucines, structural genomics; NMR {Homo sapiens}
PDB: 2rr6_A 2jqd_A
Length = 168
Score = 32.8 bits (75), Expect = 0.002
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 10 RKRAEHNDKEIGTLEEIALH--QEHIEKIEALDKWCKHLRILLLHSNIISKL 59
R E ++ + E+ L + + KIE L +L L L + + +
Sbjct: 13 RIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV 64
Score = 25.5 bits (56), Expect = 0.98
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 14 EHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
E E LE ++L + + L K L+ L L N I
Sbjct: 42 EGLTAEFVNLEFLSLINVGLISVSNLPK-LPKLKKLELSENRIFGG 86
Score = 23.9 bits (52), Expect = 3.5
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 23 LEEIALHQEHIEKI-EALDKWCKHLRILLLHSNIISKLG 60
L+++ L + I + L + +L L L N + +
Sbjct: 73 LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIS 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A;
nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 31.6 bits (72), Expect = 0.005
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 10 RKRAEHNDKEIGTLEEIAL--HQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
R E ++ ++E+ L + + K+E L + L L + ++ +
Sbjct: 6 RIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI 57
Score = 26.6 bits (59), Expect = 0.35
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 14 EHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60
E E LE ++ + I L K L+ L L N +S
Sbjct: 35 EGLTDEFEELEFLSTINVGLTSIANLPK-LNKLKKLELSDNRVSGGL 80
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 30.1 bits (67), Expect = 0.025
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + L + I+ + +L K L+ L L N IS +
Sbjct: 89 LGWLFLDENKIKDLSSLKD-LKKLKSLSLEHNGISDI 124
Score = 28.5 bits (63), Expect = 0.099
Identities = 6/42 (14%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
E+ ++++I + I+ ++ + ++ L L+ N ++ +
Sbjct: 40 NELNSIDQIIANNSDIKSVQGIQY-LPNVTKLFLNGNKLTDI 80
Score = 28.1 bits (62), Expect = 0.14
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
LE + L I I L + L L L N IS +
Sbjct: 133 LESLYLGNNKITDITVLSR-LTKLDTLSLEDNQISDI 168
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 28.1 bits (63), Expect = 0.11
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + L + ++ + +L K L+ L L N IS +
Sbjct: 92 LGWLFLDENKVKDLSSLKD-LKKLKSLSLEHNGISDI 127
Score = 26.6 bits (59), Expect = 0.40
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
LE + L I I L + L L L N IS +
Sbjct: 136 LESLYLGNNKITDITVLSR-LTKLDTLSLEDNQISDI 171
Score = 25.0 bits (55), Expect = 1.4
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
+ ++ L+ + I+ L K+L L L N + L
Sbjct: 70 VTKLFLNGNKLTDIKPLAN-LKNLGWLFLDENKVKDL 105
>5rub_A Rubisco (ribulose-1,5-bisphosphate carboxylase(slash)oxygenase);
lyase(carbon-carbon); 1.70A {Rhodospirillum rubrum}
SCOP: c.1.14.1 d.58.9.1 PDB: 1rus_A 2rus_A 9rub_A*
1rba_A
Length = 490
Score = 28.3 bits (62), Expect = 0.11
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 22 TLEEIALHQEHIEKIEALDKWCKHLRILL 50
+ + A +EH E A + + +
Sbjct: 446 PVLDYA--REHKELARAFESFPGDADQIY 472
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 27.7 bits (62), Expect = 0.18
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
++ +I+ + + +L+ L L N IS L
Sbjct: 43 VQNFNGDNSNIQSLAGMQF-FTNLKELHLSHNQISDL 78
Score = 27.3 bits (61), Expect = 0.20
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L+E+ L I + L L L ++ N + L
Sbjct: 65 LKELHLSHNQISDLSPLKD-LTKLEELSVNRNRLKNL 100
Score = 27.3 bits (61), Expect = 0.24
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 22 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + L + ++L K+L IL + +N + +
Sbjct: 107 CLSRLFLDNNELRDTDSLIH-LKNLEILSIRNNKLKSI 143
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.23
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 2 VRISEDLVRKRAEHNDKEIGTLEEIA----LHQE-----HIEKIEALDKWCKHLRILLLH 52
S++ ++ E K G L EI +Q+ + ++ + +++
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKL---- 1874
Query: 53 SNI-ISKL 59
I I +L
Sbjct: 1875 QKIDIIEL 1882
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 0.39
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 9 VRKRAEHNDKEIGTLEEIALHQEHIEKIEA---LDKWCKH 45
+RK E K + L+ + E + +A L++W +
Sbjct: 87 IRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 126
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 26.4 bits (59), Expect = 0.53
Identities = 7/38 (18%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 22 TLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
++ ++ + E + I+ ++ +L L L+ N I+ +
Sbjct: 45 SITKLVVAGEKVASIQGIEY-LTNLEYLNLNGNQITDI 81
Score = 25.2 bits (56), Expect = 1.4
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + + I I AL +LR L L+ + IS +
Sbjct: 90 LTNLYIGTNKITDISALQN-LTNLRELYLNEDNISDI 125
Score = 25.2 bits (56), Expect = 1.5
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + I I + L L + +N I+ L
Sbjct: 201 LHYFTAYVNQITDITPVAN-MTRLNSLKIGNNKITDL 236
Score = 24.4 bits (54), Expect = 2.3
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
LE + L+ I I L L L + +N I+ +
Sbjct: 68 LEYLNLNGNQITDISPLSN-LVKLTNLYIGTNKITDI 103
Score = 23.3 bits (51), Expect = 5.7
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L ++L+ IE I L L + N I+ +
Sbjct: 179 LYSLSLNYNQIEDISPLAS-LTSLHYFTAYVNQITDI 214
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 26.1 bits (57), Expect = 0.63
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 31 EHIEKIEALDKWCKHLRILLLHSNIISKLG 60
++ + ++ + +L+IL L N +
Sbjct: 183 YRLDDMSSIVQKAPNLKILNLSGNELKSER 212
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 26.1 bits (58), Expect = 0.64
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 18 KEIGTLEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
+ LE + + ++ L + K L + + +S L
Sbjct: 88 ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 25.5 bits (56), Expect = 1.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 23 LEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
L+E+ L H+ I + HL+ L + + I +
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246
Score = 24.7 bits (54), Expect = 1.8
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L+++ + Q I+ IE A D + L + L N ++ L
Sbjct: 233 LQKLWMIQSQIQVIERNAFDN-LQSLVEINLAHNNLTLL 270
Score = 23.6 bits (51), Expect = 6.3
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + L ++ +I L L L L N +S +
Sbjct: 187 LRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAI 222
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
c.10.2.7
Length = 347
Score = 25.5 bits (55), Expect = 1.1
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L + + + + + A L L L N + L
Sbjct: 58 LRNLTIVKSGLRFVAPDAFHF-TPRLSRLNLSFNALESL 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 25.4 bits (56), Expect = 1.3
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 22 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
TL E+ L I+ IE D L L L N I +
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232
Score = 22.7 bits (49), Expect = 9.8
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L + L I KI A + L+ L + N + ++
Sbjct: 80 LYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNHLVEI 117
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 1.6
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 15 HNDKEIGTLEEIALHQEHIEKIEALDKWCKH 45
+ + ++ E ALH+ ++ +
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus;
1.90A {Mus musculus}
Length = 168
Score = 24.7 bits (55), Expect = 1.8
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 8/42 (19%)
Query: 7 DLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKWCKHLRI 48
A ++ +K+ +D+W K + +
Sbjct: 64 SKQTLSA----LKLD----CKTEVSVSDKLATVDEWRKEMGL 97
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia
fungorum}
Length = 432
Score = 25.0 bits (54), Expect = 1.8
Identities = 5/22 (22%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 23 LEEIALHQEHIEKIEALDKWCK 44
L A + E AL +
Sbjct: 411 LPVYA--EHMPELRRALAFFGG 430
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 24.7 bits (54), Expect = 1.9
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
LEE+ + H +I + L+ L + ++ +S +
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLI 257
Score = 24.7 bits (54), Expect = 2.3
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L+++ + + IE A D L L L N +S L
Sbjct: 244 LKKLWVMNSQVSLIERNAFDG-LASLVELNLAHNNLSSL 281
Score = 24.7 bits (54), Expect = 2.4
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60
L+ + L +I+ + L L L + N ++
Sbjct: 198 LKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIR 234
Score = 23.2 bits (50), Expect = 8.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 22 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
+ L + +I+ I+A + HL +L L N I ++
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ;
1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A*
3a7b_A* 2z7x_A*
Length = 549
Score = 24.7 bits (54), Expect = 2.2
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 22 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
++ + L I I D + C +L++L+L S+ I+ +
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65
Score = 23.9 bits (52), Expect = 4.1
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + + + + +W + +R L L S I +
Sbjct: 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 24.3 bits (53), Expect = 2.7
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
++ + L I + L +L++L L N I+ +
Sbjct: 109 IKTLDLTSTQITDVTPLAG-LSNLQVLYLDLNQITNI 144
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 24.2 bits (53), Expect = 3.0
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKLG 60
L E+ L+ + K+ K+++++ LH+N IS +G
Sbjct: 242 LRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279
Score = 24.2 bits (53), Expect = 3.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 22 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
+L E+ L I K++A K +L L L N IS +
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Score = 24.2 bits (53), Expect = 3.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L + L I KI A L L L N + +L
Sbjct: 78 LHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKEL 115
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 24.3 bits (53), Expect = 3.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 22 TLEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
LE++ L Q I KI+ A HL L L N + +
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGSI 338
Score = 24.3 bits (53), Expect = 3.3
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 23 LEEIALHQEHIEKIEA-LDKWCKHLRILLLHSNIISKL 59
++ L + I + + L L L N I+K+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 23.9 bits (52), Expect = 4.5
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 23 LEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
L+EI L + +E + +LR+L + N ++ L
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 23.7 bits (51), Expect = 5.4
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 23 LEEIALHQEHIEKIEALDKWCKHLRILLLHSNIISKL 59
L + + +EA L L L N I ++
Sbjct: 575 LGLLDCVHNKVRHLEAFGT-NVKLTDLKLDYNQIEEI 610
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 23.6 bits (51), Expect = 5.8
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 22 TLEEIALHQEHIEKIEALD-KWCKHLRILLLHSNIISKL 59
++ + L + + + + K L++L L N I+K+
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2,
LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 23.1 bits (50), Expect = 8.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L+ + L + I+ IE A HL L+L N I L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQSL 91
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 23.0 bits (50), Expect = 8.7
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 23 LEEIALHQEHIEKIE--ALDKWCKHLRILLLHSNIISKL 59
L + L Q +E++ A + L++L + N L
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSL 214
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese,
zinc; NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 22.9 bits (50), Expect = 9.0
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 24 EEIALHQEHIEKIEALDKW 42
EE+ L ++ + + + W
Sbjct: 56 EEVGLSRKDVRILASTRNW 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.391
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 984,863
Number of extensions: 46641
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 105
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.1 bits)