RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5414
         (62 letters)



>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
          (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 198

 Score = 26.2 bits (56), Expect = 0.22
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 6  EDLVRKRAEHNDKEIGTLEEIALHQEHIEKIEALDKW---CKHLRILLLHSNIISKL 59
          +D +R   E         E++ LH   I  IE +D      K  + L L +N I K+
Sbjct: 8  KDAIRIFEERKSVVATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKI 63


>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 23.2 bits (50), Expect = 2.4
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 9   VRKRAEHNDKEIGTLEEIALHQEHIEK 35
           V+   +    +I  LEEIA     ++ 
Sbjct: 238 VQTVEKRQGFKIACLEEIAWRNGWLDD 264


>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 325

 Score = 23.3 bits (50), Expect = 2.7
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 24  EEIALHQEHIEKIEALDKWCKHLRILL 50
           E   L +E  E I +  KW   L    
Sbjct: 283 EGRDLAREGNEIIRSACKWSPELAAAC 309


>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rhodospirillum rubrum [TaxId:
           1085]}
          Length = 320

 Score = 22.5 bits (48), Expect = 4.1
 Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 2/25 (8%)

Query: 22  TLEEIALHQEHIEKIEALDKWCKHL 46
            + + A  +EH E   A + +    
Sbjct: 285 PVLDYA--REHKELARAFESFPGDA 307


>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 292

 Score = 22.4 bits (48), Expect = 5.6
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 7   DLVRKRAEHNDKEIGTLEEIALHQEHIEK 35
             +         ++   EEIA  Q+ I+ 
Sbjct: 236 QFIATLENRQGLKVACPEEIAYRQKWIDA 264


>d1z7aa1 c.6.2.6 (A:4-304) Hypothetical protein PA1517 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 301

 Score = 22.0 bits (46), Expect = 7.6
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 1   MVRISEDLVRKRAEHNDKEIGTLEEIALH 29
            +   E  ++    H+       E+IA H
Sbjct: 265 RMAALERFIQYAQSHDKVWFARREDIARH 293


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,105
Number of extensions: 9206
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 15
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)