Query psy5415
Match_columns 160
No_of_seqs 104 out of 177
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:52:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05255 UPF0220: Uncharacteri 100.0 4.7E-61 1E-65 383.6 12.3 155 4-160 1-166 (166)
2 KOG3393|consensus 100.0 2.4E-59 5.2E-64 366.9 10.6 147 11-160 6-156 (157)
3 PF10601 zf-LITAF-like: LITAF- 73.3 2.9 6.3E-05 28.6 2.1 39 6-44 1-43 (73)
4 PRK10714 undecaprenyl phosphat 66.5 16 0.00034 31.5 5.7 53 96-149 231-283 (325)
5 PRK02935 hypothetical protein; 58.6 24 0.00052 27.0 4.7 47 95-153 11-61 (110)
6 PF11119 DUF2633: Protein of u 50.8 20 0.00044 24.5 2.9 21 93-113 7-27 (59)
7 PF06963 FPN1: Ferroportin1 (F 45.9 36 0.00078 31.1 4.6 34 118-151 57-90 (432)
8 PF09788 Tmemb_55A: Transmembr 41.8 67 0.0014 27.9 5.4 71 3-73 168-244 (256)
9 smart00834 CxxC_CXXC_SSSS Puta 32.6 17 0.00036 21.6 0.2 10 10-19 24-33 (41)
10 PF11023 DUF2614: Protein of u 32.2 81 0.0017 24.3 3.9 41 100-152 19-59 (114)
11 PF03604 DNA_RNApol_7kD: DNA d 32.0 24 0.00053 21.1 0.9 10 10-19 15-24 (32)
12 PRK13499 rhamnose-proton sympo 31.2 2.6E+02 0.0057 25.0 7.7 74 25-111 257-336 (345)
13 COG1996 RPC10 DNA-directed RNA 28.6 26 0.00056 23.1 0.6 17 4-20 16-32 (49)
14 PRK00398 rpoP DNA-directed RNA 26.6 23 0.0005 22.0 0.2 17 5-21 14-30 (46)
15 PF07754 DUF1610: Domain of un 25.3 44 0.00095 18.9 1.1 14 5-19 10-23 (24)
16 cd00730 rubredoxin Rubredoxin; 24.3 39 0.00084 22.1 0.9 17 4-20 26-42 (50)
17 PF11085 YqhR: Conserved membr 23.8 1.2E+02 0.0026 24.9 3.8 22 28-49 94-115 (173)
18 smart00659 RPOLCX RNA polymera 21.6 44 0.00095 21.2 0.7 11 10-20 17-27 (44)
19 COG1852 Uncharacterized conser 21.1 1.6E+02 0.0036 24.8 4.2 54 104-157 10-64 (209)
20 COG5528 Predicted integral mem 20.3 1.2E+02 0.0026 24.2 3.1 27 94-121 126-152 (155)
21 TIGR00686 phnA alkylphosphonat 20.2 48 0.001 25.3 0.8 16 10-25 17-32 (109)
No 1
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=100.00 E-value=4.7e-61 Score=383.56 Aligned_cols=155 Identities=39% Similarity=0.727 Sum_probs=144.3
Q ss_pred CCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCccchhhHHHHHHHHHHHhcc
Q psy5415 4 FDFESNPHLAQCLWCDSNGGDNRNAIFAMIAGTLFFTGWWFIIDAVAVAA-------SFPFSYHLMGIIGTISLFMINAV 76 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~~~~~~rn~i~~~~AGaLF~~gwWi~iDa~v~~~-------~~~f~~~ipgI~stlgm~mvN~V 76 (160)
||.+++ +|||+.|++|+++|||++++|+||+||++|||++|||+++++ |++|+||+||||||+||+|+|+|
T Consensus 1 M~~~~~--~~r~~~~~~~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN~V 78 (166)
T PF05255_consen 1 MSGCLD--LFRFCPPWFDWSEKRNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVNSV 78 (166)
T ss_pred Ccchhh--cccccCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhccc
Confidence 555554 999655679999999999999999999999999999999987 58999999999999999999999
Q ss_pred CCCccccCCCCC-CCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccC--CCcccchHHHHHHHHHHHHhhhhhhhc
Q psy5415 77 SNAQMRGDSYSG-GCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIK--GAAVWPGFELVFQNVFIFAASLVYKFG 153 (160)
Q Consensus 77 ~~~~l~~d~~~~-g~~g~~~AR~wLFigf~l~fggl~gS~~ili~~yv~~~--~~~~w~Gva~vlqN~lI~~Sslv~~f~ 153 (160)
||+||++|++++ |+.++||||+|||+||+++|||++||+|||++||+.|+ +++.|||||+|+||++||+||++|||+
T Consensus 79 ~~~~l~~~~~~~~~~~~~~~aR~~LFigf~l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~~~ 158 (166)
T PF05255_consen 79 SKSRLRGDSYSESGCGGAWRARLWLFIGFALSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLWFG 158 (166)
T ss_pred cHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHHhc
Confidence 999999999876 78899999999999999999999999999999999985 578999999999999999999999999
Q ss_pred c-ccccCC
Q psy5415 154 R-QEDQWS 160 (160)
Q Consensus 154 r-~ed~~~ 160 (160)
| +||||+
T Consensus 159 r~~ed~y~ 166 (166)
T PF05255_consen 159 RNTEDEYS 166 (166)
T ss_pred ccccccCC
Confidence 9 589985
No 2
>KOG3393|consensus
Probab=100.00 E-value=2.4e-59 Score=366.93 Aligned_cols=147 Identities=47% Similarity=0.987 Sum_probs=141.7
Q ss_pred CCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcC---CCCccchhhHHHHHHHHHHHhccCCCccccCCCC
Q psy5415 11 HLAQCLWCDSNGGDNRNAIFAMIAGTLFFTGWWFIIDAVAVAA---SFPFSYHLMGIIGTISLFMINAVSNAQMRGDSYS 87 (160)
Q Consensus 11 ~~~~~~~c~~~~~~~rn~i~~~~AGaLF~~gwWi~iDa~v~~~---~~~f~~~ipgI~stlgm~mvN~V~~~~l~~d~~~ 87 (160)
++||| .|++||++|||.+. +||+||++|||++|||+++++ |+||+||+|++|||++++|||+|||+|+++|+|+
T Consensus 6 ~~fR~-~~~~~~~~rrn~v~--~aG~LFf~GwWi~iDAa~~~~~~~~~t~~~~i~~v~stl~~~mVNaI~~~~vsgds~a 82 (157)
T KOG3393|consen 6 DLFRC-SECIDWGERRNAVA--VAGALFFTGWWIMIDAALISPKSEQITFVYWIIGVFSTLAFLMVNAISNSQVSGDSYA 82 (157)
T ss_pred hheee-eeeecccccccchH--HHHHHHHHHHHHhhhhhhccCcccceeeeeehhHHHHHHHHHhheccccceecCCccc
Confidence 68999 55699999999987 999999999999999999987 8999999999999999999999999999999999
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCc-ccchHHHHHHHHHHHHhhhhhhhccccccCC
Q psy5415 88 GGCFGPQGARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAA-VWPGFELVFQNVFIFAASLVYKFGRQEDQWS 160 (160)
Q Consensus 88 ~g~~g~~~AR~wLFigf~l~fggl~gS~~ili~~yv~~~~~~-~w~Gva~vlqN~lI~~Sslv~~f~r~ed~~~ 160 (160)
+|++|+|+||+|||+||+|+||||+||+||||.||++++++. +|||+|+++||++||+|+++|||+|+||||.
T Consensus 83 ~g~sga~~AR~wLfiGF~l~fgsLias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~v~kfgr~ed~w~ 156 (157)
T KOG3393|consen 83 EGCSGARGARIWLFIGFALLFGSLIASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSLVYKFGRTEDEWH 156 (157)
T ss_pred ccccccchhhhHHHHHHHHHHhhhhhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHHHHhhcCchhhhc
Confidence 999999999999999999999999999999999999999876 7999999999999999999999999999994
No 3
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=73.30 E-value=2.9 Score=28.58 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=26.6
Q ss_pred CCCCCCCcccccccCCC----CCCchhHHHHHHHHHHHHHHHH
Q psy5415 6 FESNPHLAQCLWCDSNG----GDNRNAIFAMIAGTLFFTGWWF 44 (160)
Q Consensus 6 ~~~~~~~~~~~~c~~~~----~~~rn~i~~~~AGaLF~~gwWi 44 (160)
+.++|.+++||.|+-.- ..+.....-..|++++..+.|-
T Consensus 1 ~~~~p~~~~CP~C~~~~~T~v~~~~g~~t~~~~~~l~~~~~~~ 43 (73)
T PF10601_consen 1 FGPEPVRIYCPYCQQQVQTRVEYKSGTMTYICAALLCLFGCWP 43 (73)
T ss_pred CCCCceeeECCCCCCEEEEEEEEEeChHHHHHHHHHHHHHHHH
Confidence 45778999999996432 2333444556888888887665
No 4
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=66.47 E-value=16 Score=31.51 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcccchHHHHHHHHHHHHhhhh
Q psy5415 96 ARVWLFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFIFAASLV 149 (160)
Q Consensus 96 AR~wLFigf~l~fggl~gS~~ili~~yv~~~~~~~w~Gva~vlqN~lI~~Sslv 149 (160)
-|++.++|+++++.|++.++++++.++.... +..-+|.+.++.-.+++.+..+
T Consensus 231 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~~~g~~l 283 (325)
T PRK10714 231 LRLLSLLGSIIAIGGFSLAVLLVVLRLTFGP-QWAAEGVFMLFAVLFTFIGAQF 283 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCcHHHHHHHHHHHHHHH
Confidence 4778889999999999999998887776321 1011355555444444444333
No 5
>PRK02935 hypothetical protein; Provisional
Probab=58.64 E-value=24 Score=26.96 Aligned_cols=47 Identities=17% Similarity=0.444 Sum_probs=34.3
Q ss_pred chhHH----HHHHHHHHHHHHHHHHHHhhhcccccCCCcccchHHHHHHHHHHHHhhhhhhhc
Q psy5415 95 GARVW----LFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFIFAASLVYKFG 153 (160)
Q Consensus 95 ~AR~w----LFigf~l~fggl~gS~~ili~~yv~~~~~~~w~Gva~vlqN~lI~~Sslv~~f~ 153 (160)
|.|.| .|+|+.+|-.| +++ ++ ...-+++..++.-+.++.|+.+|++.
T Consensus 11 kiRt~aL~lvfiG~~vMy~G------iff-----~~-~~~~m~ifm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 11 KIRTFALSLVFIGFIVMYLG------IFF-----RE-SIIIMTIFMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHh-----cc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 78899888888 222 22 24678888889999999999988653
No 6
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=50.79 E-value=20 Score=24.54 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=17.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q psy5415 93 PQGARVWLFVGFVMGFAAVIA 113 (160)
Q Consensus 93 ~~~AR~wLFigf~l~fggl~g 113 (160)
..-+|.+|.|+|...||=++=
T Consensus 7 ~~mtriVLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 7 SRMTRIVLLISFIILFGRLIY 27 (59)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999995443
No 7
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=45.89 E-value=36 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=24.6
Q ss_pred hhhcccccCCCcccchHHHHHHHHHHHHhhhhhh
Q psy5415 118 LYSGFLSIKGAAVWPGFELVFQNVFIFAASLVYK 151 (160)
Q Consensus 118 li~~yv~~~~~~~w~Gva~vlqN~lI~~Sslv~~ 151 (160)
.+.+|+++..-..-.-..+++||+.+.+|+.++.
T Consensus 57 ~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~ 90 (432)
T PF06963_consen 57 WVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFL 90 (432)
T ss_pred HHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457776553334555679999999999999766
No 8
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=41.77 E-value=67 Score=27.92 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccccccc------CCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhhHHHHHHHHHHH
Q psy5415 3 LFDFESNPHLAQCLWCD------SNGGDNRNAIFAMIAGTLFFTGWWFIIDAVAVAASFPFSYHLMGIIGTISLFMI 73 (160)
Q Consensus 3 ~~~~~~~~~~~~~~~c~------~~~~~~rn~i~~~~AGaLF~~gwWi~iDa~v~~~~~~f~~~ipgI~stlgm~mv 73 (160)
++++-.+..+-|||.|+ -++..+|-.+.-+++=.++.+|-=+.+-+..++++....|..-..+-.++++++
T Consensus 168 l~~~~~~~tlARCPHCrKvSSVG~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~ 244 (256)
T PF09788_consen 168 LFNTLTSNTLARCPHCRKVSSVGPRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICL 244 (256)
T ss_pred eccCCCCCccccCCCCceeccccchHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHH
No 9
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=32.55 E-value=17 Score=21.55 Aligned_cols=10 Identities=40% Similarity=0.704 Sum_probs=6.2
Q ss_pred CCCccccccc
Q psy5415 10 PHLAQCLWCD 19 (160)
Q Consensus 10 ~~~~~~~~c~ 19 (160)
++..+||.|.
T Consensus 24 ~~~~~CP~Cg 33 (41)
T smart00834 24 DPLATCPECG 33 (41)
T ss_pred CCCCCCCCCC
Confidence 4566677774
No 10
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.21 E-value=81 Score=24.29 Aligned_cols=41 Identities=15% Similarity=0.426 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCcccchHHHHHHHHHHHHhhhhhhh
Q psy5415 100 LFVGFVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFIFAASLVYKF 152 (160)
Q Consensus 100 LFigf~l~fggl~gS~~ili~~yv~~~~~~~w~Gva~vlqN~lI~~Sslv~~f 152 (160)
.|+|+.+|.+|+ ++ ++ ...-+++..++.-+.++.|+.+|.+
T Consensus 19 if~g~~vmy~gi------~f-----~~-~~~im~ifmllG~L~~l~S~~VYfw 59 (114)
T PF11023_consen 19 IFIGMIVMYIGI------FF-----KA-SPIIMVIFMLLGLLAILASTAVYFW 59 (114)
T ss_pred HHHHHHHHhhhh------hh-----cc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888887762 22 12 2457788888888888899888865
No 11
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=32.05 E-value=24 Score=21.06 Aligned_cols=10 Identities=20% Similarity=0.458 Sum_probs=8.3
Q ss_pred CCCccccccc
Q psy5415 10 PHLAQCLWCD 19 (160)
Q Consensus 10 ~~~~~~~~c~ 19 (160)
.+.+|||+|.
T Consensus 15 ~~~irC~~CG 24 (32)
T PF03604_consen 15 GDPIRCPECG 24 (32)
T ss_dssp SSTSSBSSSS
T ss_pred CCcEECCcCC
Confidence 3789999995
No 12
>PRK13499 rhamnose-proton symporter; Provisional
Probab=31.22 E-value=2.6e+02 Score=25.01 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=51.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhhcC-CCCccchhhH-----HHHHHHHHHHhccCCCccccCCCCCCCCCccchhH
Q psy5415 25 NRNAIFAMIAGTLFFTGWWFIIDAVAVAA-SFPFSYHLMG-----IIGTISLFMINAVSNAQMRGDSYSGGCFGPQGARV 98 (160)
Q Consensus 25 ~rn~i~~~~AGaLF~~gwWi~iDa~v~~~-~~~f~~~ipg-----I~stlgm~mvN~V~~~~l~~d~~~~g~~g~~~AR~ 98 (160)
.||.+...++|.+++++..++.=++..-. ...|.-|.-. ++||++=+. +++ -....+|++.
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~--------lkE-----~K~a~~k~~~ 323 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV--------LKE-----WKGASRRPVR 323 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh--------hhh-----ccCCCccchh
Confidence 36777789999999999988887665433 3455544444 999996553 221 1103578999
Q ss_pred HHHHHHHHHHHHH
Q psy5415 99 WLFVGFVMGFAAV 111 (160)
Q Consensus 99 wLFigf~l~fggl 111 (160)
.+.+|.++...|.
T Consensus 324 ~l~~G~vliI~g~ 336 (345)
T PRK13499 324 VLSLGCVVIILAA 336 (345)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 13
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=28.60 E-value=26 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.641 Sum_probs=13.6
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
+|.++..+.+|||.|..
T Consensus 16 ~~~~~~~~~irCp~Cg~ 32 (49)
T COG1996 16 VELDQETRGIRCPYCGS 32 (49)
T ss_pred eehhhccCceeCCCCCc
Confidence 35678889999999953
No 14
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=26.64 E-value=23 Score=22.04 Aligned_cols=17 Identities=12% Similarity=0.487 Sum_probs=11.3
Q ss_pred CCCCCCCCcccccccCC
Q psy5415 5 DFESNPHLAQCLWCDSN 21 (160)
Q Consensus 5 ~~~~~~~~~~~~~c~~~ 21 (160)
+.++....++||.|.-+
T Consensus 14 ~~~~~~~~~~Cp~CG~~ 30 (46)
T PRK00398 14 ELDEYGTGVRCPYCGYR 30 (46)
T ss_pred EECCCCCceECCCCCCe
Confidence 34455448999999643
No 15
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.26 E-value=44 Score=18.92 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=9.6
Q ss_pred CCCCCCCCccccccc
Q psy5415 5 DFESNPHLAQCLWCD 19 (160)
Q Consensus 5 ~~~~~~~~~~~~~c~ 19 (160)
..++. ..|.||+|.
T Consensus 10 ~r~~~-v~f~CPnCG 23 (24)
T PF07754_consen 10 PREQA-VPFPCPNCG 23 (24)
T ss_pred CcccC-ceEeCCCCC
Confidence 34444 789999984
No 16
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=24.32 E-value=39 Score=22.08 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=13.1
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
+.++.-|+.++||.|.-
T Consensus 26 t~f~~Lp~~w~CP~C~a 42 (50)
T cd00730 26 TPFEDLPDDWVCPVCGA 42 (50)
T ss_pred CCHhHCCCCCCCCCCCC
Confidence 44566799999999943
No 17
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=23.79 E-value=1.2e+02 Score=24.95 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q psy5415 28 AIFAMIAGTLFFTGWWFIIDAV 49 (160)
Q Consensus 28 ~i~~~~AGaLF~~gwWi~iDa~ 49 (160)
++-..-.|++|+++||..+=-+
T Consensus 94 k~~g~W~Gi~YG~~~W~ivF~~ 115 (173)
T PF11085_consen 94 KFKGPWPGILYGLAWWAIVFFV 115 (173)
T ss_pred HhcccchHHHHHHHHHHHHHHH
Confidence 3344457888888888877664
No 18
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=21.58 E-value=44 Score=21.18 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=9.0
Q ss_pred CCCcccccccC
Q psy5415 10 PHLAQCLWCDS 20 (160)
Q Consensus 10 ~~~~~~~~c~~ 20 (160)
.+.+|||+|..
T Consensus 17 ~~~irC~~CG~ 27 (44)
T smart00659 17 KDVVRCRECGY 27 (44)
T ss_pred CCceECCCCCc
Confidence 48899999953
No 19
>COG1852 Uncharacterized conserved protein [Function unknown]
Probab=21.11 E-value=1.6e+02 Score=24.81 Aligned_cols=54 Identities=28% Similarity=0.488 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCcccchHHHHHHHHHH-HHhhhhhhhccccc
Q psy5415 104 FVMGFAAVIASCWILYSGFLSIKGAAVWPGFELVFQNVFI-FAASLVYKFGRQED 157 (160)
Q Consensus 104 f~l~fggl~gS~~ili~~yv~~~~~~~w~Gva~vlqN~lI-~~Sslv~~f~r~ed 157 (160)
|+.++++++.+.-.|+..++.-...-..||..++.-+.++ .+=...++++.++|
T Consensus 10 ~~~~~~~~i~~~~~l~i~r~~~~~kl~~~~~~L~~~~~fy~~ik~~~~~~~~~~~ 64 (209)
T COG1852 10 FLSMLLAFILSGLALLISRISLKKKLIFPGFDLFTLDLFYAPIKTILFKLSEDED 64 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHhccch
Confidence 4455556666555555555443335588999999888877 66666777775553
No 20
>COG5528 Predicted integral membrane protein [Function unknown]
Probab=20.29 E-value=1.2e+02 Score=24.21 Aligned_cols=27 Identities=44% Similarity=0.881 Sum_probs=22.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5415 94 QGARVWLFVGFVMGFAAVIASCWILYSG 121 (160)
Q Consensus 94 ~~AR~wLFigf~l~fggl~gS~~ili~~ 121 (160)
+--|+|+-+|| ..|++.++-.|.|+.|
T Consensus 126 rlfrvwfv~gf-pafaavlAi~wLMvsk 152 (155)
T COG5528 126 RLFRVWFVMGF-PAFAAVLAIAWLMVSK 152 (155)
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHcc
Confidence 45789999887 5789999999999976
No 21
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.19 E-value=48 Score=25.32 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=13.1
Q ss_pred CCCcccccccCCCCCC
Q psy5415 10 PHLAQCLWCDSNGGDN 25 (160)
Q Consensus 10 ~~~~~~~~c~~~~~~~ 25 (160)
.+++-||+|..+|.+.
T Consensus 17 g~~~iCpeC~~EW~~~ 32 (109)
T TIGR00686 17 GTQLICPSCLYEWNEN 32 (109)
T ss_pred CCeeECcccccccccc
Confidence 3678899999999764
Done!