Query psy5415
Match_columns 160
No_of_seqs 104 out of 177
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:53:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_L DNA-directed RNA polyme 22.9 44 0.0015 22.0 2.0 9 11-19 37-45 (63)
2 1wii_A Hypothetical UPF0222 pr 21.6 28 0.00094 24.2 0.8 14 8-21 19-32 (85)
3 6rxn_A Rubredoxin; electron tr 21.4 28 0.00095 21.5 0.7 15 6-20 24-38 (46)
4 2l9u_A Receptor tyrosine-prote 16.8 92 0.0031 18.6 2.2 17 140-156 19-35 (40)
5 4rxn_A Rubredoxin; electron tr 15.0 57 0.0019 20.7 1.1 17 4-20 28-44 (54)
6 1e8j_A Rubredoxin; iron-sulfur 13.2 1.3E+02 0.0045 18.7 2.4 16 6-21 30-45 (52)
7 2jp3_A FXYD domain-containing 11.3 2E+02 0.007 19.1 3.0 27 21-48 13-39 (67)
8 1bw3_A Barwin, basic barley SE 11.0 73 0.0025 23.6 0.7 18 14-31 85-104 (125)
9 1hxr_A Guanine nucleotide exch 10.6 82 0.0028 22.8 0.9 15 5-19 5-19 (115)
10 2jo1_A Phospholemman; FXYD1, N 10.4 2.3E+02 0.0078 19.2 3.0 29 20-49 11-39 (72)
No 1
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=22.87 E-value=44 Score=22.03 Aligned_cols=9 Identities=22% Similarity=0.723 Sum_probs=7.1
Q ss_pred CCccccccc
Q psy5415 11 HLAQCLWCD 19 (160)
Q Consensus 11 ~~~~~~~c~ 19 (160)
+.+|||+|.
T Consensus 37 ~~iRC~~CG 45 (63)
T 3h0g_L 37 EVIRCRECG 45 (63)
T ss_dssp SCCCCSSSC
T ss_pred CceECCCCC
Confidence 678888885
No 2
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=21.64 E-value=28 Score=24.22 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=10.8
Q ss_pred CCCCCcccccccCC
Q psy5415 8 SNPHLAQCLWCDSN 21 (160)
Q Consensus 8 ~~~~~~~~~~c~~~ 21 (160)
.-|..|+||+|+-+
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 45688999999644
No 3
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.40 E-value=28 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.8
Q ss_pred CCCCCCCcccccccC
Q psy5415 6 FESNPHLAQCLWCDS 20 (160)
Q Consensus 6 ~~~~~~~~~~~~c~~ 20 (160)
++.-|+..+||.|.-
T Consensus 24 f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 24 FDQLPDDWCCPVCGV 38 (46)
T ss_dssp GGGSCTTCBCTTTCC
T ss_pred hhhCCCCCcCcCCCC
Confidence 456789999999953
No 4
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=16.84 E-value=92 Score=18.60 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHhhhhhhhcccc
Q psy5415 140 NVFIFAASLVYKFGRQE 156 (160)
Q Consensus 140 N~lI~~Sslv~~f~r~e 156 (160)
-++|+-|+.+||-||..
T Consensus 19 if~~lg~tflywrgrrh 35 (40)
T 2l9u_A 19 IFMMLGGTFLYWRGRRH 35 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCceeEEEccccc
Confidence 45778889999999863
No 5
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=14.97 E-value=57 Score=20.72 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=13.3
Q ss_pred CCCCCCCCCcccccccC
Q psy5415 4 FDFESNPHLAQCLWCDS 20 (160)
Q Consensus 4 ~~~~~~~~~~~~~~c~~ 20 (160)
..++.-|+..+||.|.-
T Consensus 28 t~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 28 TDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp CCGGGSCTTCBCTTTCC
T ss_pred CChhHCCCCCcCcCCCC
Confidence 34567899999999954
No 6
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=13.19 E-value=1.3e+02 Score=18.67 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=12.4
Q ss_pred CCCCCCCcccccccCC
Q psy5415 6 FESNPHLAQCLWCDSN 21 (160)
Q Consensus 6 ~~~~~~~~~~~~c~~~ 21 (160)
+|.-|+..+||.|.-+
T Consensus 30 f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 30 FEDLPDDWACPVCGAS 45 (52)
T ss_dssp TTSSCTTCCCSSSCCC
T ss_pred hHHCCCCCcCCCCCCc
Confidence 4567899999999543
No 7
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=11.31 E-value=2e+02 Score=19.15 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=20.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHh
Q psy5415 21 NGGDNRNAIFAMIAGTLFFTGWWFIIDA 48 (160)
Q Consensus 21 ~~~~~rn~i~~~~AGaLF~~gwWi~iDa 48 (160)
||. +-|.-|-++||.||.+|--+.+-.
T Consensus 13 DY~-tLRigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 13 DWE-SLQLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp GGH-HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chH-HheecchhhHHHHHHHHHHHHHcC
Confidence 454 357778899999999998776644
No 8
>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A
Probab=10.99 E-value=73 Score=23.60 Aligned_cols=18 Identities=22% Similarity=0.054 Sum_probs=12.5
Q ss_pred ccccccCCCC-C-CchhHHH
Q psy5415 14 QCLWCDSNGG-D-NRNAIFA 31 (160)
Q Consensus 14 ~~~~c~~~~~-~-~rn~i~~ 31 (160)
|||.|.+|++ + --++++.
T Consensus 85 ~CP~ggLDLS~~~AF~~Ia~ 104 (125)
T 1bw3_A 85 QCANGGLDLDWDTVFTKIDT 104 (125)
T ss_dssp CCSSSSCCSCSSSSHHHHCS
T ss_pred eCCCCCCCCCCHHHHHHHhc
Confidence 7999989988 4 3355544
No 9
>1hxr_A Guanine nucleotide exchange factor MSS4; RAB GTPase, membrane trafficking, Zn binding site, metal binding protein; 1.65A {Rattus norvegicus} SCOP: b.88.1.1 PDB: 1fwq_A 2fu5_A
Probab=10.55 E-value=82 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.4
Q ss_pred CCCCCCCCccccccc
Q psy5415 5 DFESNPHLAQCLWCD 19 (160)
Q Consensus 5 ~~~~~~~~~~~~~c~ 19 (160)
+.+.|...+|||.|+
T Consensus 5 ~~~~N~~~i~C~~C~ 19 (115)
T 1hxr_A 5 AEGRNRKAVLCQRCG 19 (115)
T ss_dssp TTSBBSSCEEETTTC
T ss_pred cCCcccCeEECCCCC
Confidence 567788999999994
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.39 E-value=2.3e+02 Score=19.18 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q psy5415 20 SNGGDNRNAIFAMIAGTLFFTGWWFIIDAV 49 (160)
Q Consensus 20 ~~~~~~rn~i~~~~AGaLF~~gwWi~iDa~ 49 (160)
.||.. -|.-+-++||+||.+|--+.+-.-
T Consensus 11 YDY~t-LRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQS-LQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHH-hhccchHHHHHHHHHHHHHHHcCc
Confidence 34543 567788999999999987766553
Done!